******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/lin-40.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:421949-422029 1.0000 80 chrIV:1721728-1721808 1.0000 80 chrX:17255936-17256016 1.0000 80 chrIV:17474201-17474281 1.0000 80 chrV:5836467-5836547 1.0000 80 chrII:6562235-6562315 1.0000 80 chrX:2593018-2593098 1.0000 80 chrV:18638330-18638410 1.0000 80 chrX:10689906-10689986 1.0000 80 chrIV:10216826-10216906 1.0000 80 chrX:7990470-7990550 1.0000 80 chrII:10707572-10707652 1.0000 80 chrX:403130-403210 1.0000 80 chrX:8048805-8048885 1.0000 80 chrX:422164-422244 1.0000 80 chrIV:626270-626350 1.0000 80 chrX:10668032-10668112 1.0000 80 chrIII:12843010-12843090 1.0000 80 chrV:5836692-5836772 1.0000 80 chrX:13469388-13469468 1.0000 80 chrII:10707327-10707407 1.0000 80 chrX:10639574-10639654 1.0000 80 chrX:12425605-12425685 1.0000 80 chrV:18638598-18638678 1.0000 80 chrX:12105350-12105430 1.0000 80 chrX:16290738-16290818 1.0000 80 chrX:1339085-1339165 1.0000 80 chrIV:14098787-14098867 1.0000 80 chrX:15706284-15706364 1.0000 80 chrX:1492331-1492411 1.0000 80 chrX:16405869-16405949 1.0000 80 chrX:3117322-3117402 1.0000 80 chrX:15036485-15036565 1.0000 80 chrI:10514300-10514380 1.0000 80 chrX:8104029-8104109 1.0000 80 chrV:4653735-4653815 1.0000 80 chrV:8449317-8449397 1.0000 80 chrIV:17471542-17471622 1.0000 80 chrV:11094898-11094978 1.0000 80 chrX:9147141-9147221 1.0000 80 chrV:18573337-18573417 1.0000 80 chrIII:11262173-11262253 1.0000 80 chrIV:9563722-9563802 1.0000 80 chrX:14978949-14979029 1.0000 80 chrIV:1459561-1459641 1.0000 80 chrX:9617051-9617131 1.0000 80 chrX:14477558-14477638 1.0000 80 chrII:10016229-10016309 1.0000 80 chrIV:10217035-10217115 1.0000 80 chrII:14838768-14838848 1.0000 80 chrII:10707800-10707880 1.0000 80 chrX:5122541-5122621 1.0000 80 chrX:13420143-13420223 1.0000 80 chrIV:5715116-5715196 1.0000 80 chrX:1124288-1124368 1.0000 80 chrIII:11255208-11255288 1.0000 80 chrI:12571065-12571145 1.0000 80 chrIV:15398787-15398867 1.0000 80 chrII:5886162-5886242 1.0000 80 chrIV:1718222-1718302 1.0000 80 chrII:1315471-1315551 1.0000 80 chrIV:8979659-8979739 1.0000 80 chrI:4382176-4382256 1.0000 80 chrV:5823136-5823216 1.0000 80 chrIII:8370959-8371039 1.0000 80 chrIV:8042229-8042309 1.0000 80 chrX:5653977-5654057 1.0000 80 chrIV:763479-763559 1.0000 80 chrI:5025527-5025607 1.0000 80 chrII:3951507-3951587 1.0000 80 chrX:12422703-12422783 1.0000 80 chrII:11836701-11836781 1.0000 80 chrX:12180937-12181017 1.0000 80 chrV:12302291-12302371 1.0000 80 chrX:2893117-2893197 1.0000 80 chrX:16775492-16775572 1.0000 80 chrII:5049447-5049527 1.0000 80 chrX:4193253-4193333 1.0000 80 chrX:14357055-14357135 1.0000 80 chrV:5848083-5848163 1.0000 80 chrV:18639747-18639827 1.0000 80 chrV:6238568-6238648 1.0000 80 chrIV:12110067-12110147 1.0000 80 chrII:15251799-15251879 1.0000 80 chrV:11087410-11087490 1.0000 80 chrX:11198718-11198798 1.0000 80 chrX:864416-864496 1.0000 80 chrIV:15901304-15901384 1.0000 80 chrII:15205410-15205490 1.0000 80 chrX:978424-978504 1.0000 80 chrI:12501390-12501470 1.0000 80 chrII:9493392-9493472 1.0000 80 chrX:9528047-9528127 1.0000 80 chrX:14500792-14500872 1.0000 80 chrX:12869541-12869621 1.0000 80 chrX:1443749-1443829 1.0000 80 chrIII:10337715-10337795 1.0000 80 chrV:5587252-5587332 1.0000 80 chrX:16725118-16725198 1.0000 80 chrX:14783752-14783832 1.0000 80 chrI:3121825-3121905 1.0000 80 chrII:9161213-9161293 1.0000 80 chrX:2559557-2559637 1.0000 80 chrIII:7722563-7722643 1.0000 80 chrIV:1715987-1716067 1.0000 80 chrV:18569571-18569651 1.0000 80 chrI:9320112-9320192 1.0000 80 chrIII:2874352-2874432 1.0000 80 chrIII:7872933-7873013 1.0000 80 chrX:14707062-14707142 1.0000 80 chrII:11637581-11637661 1.0000 80 chrII:7944557-7944637 1.0000 80 chrX:1478054-1478134 1.0000 80 chrX:1026847-1026927 1.0000 80 chrI:2667980-2668060 1.0000 80 chrV:10953805-10953885 1.0000 80 chrI:3019832-3019912 1.0000 80 chrII:12352262-12352342 1.0000 80 chrII:13016555-13016635 1.0000 80 chrIV:3874578-3874658 1.0000 80 chrX:14437975-14438055 1.0000 80 chrIV:6792514-6792594 1.0000 80 chrX:14979151-14979231 1.0000 80 chrIII:7723841-7723921 1.0000 80 chrX:17466720-17466800 1.0000 80 chrIV:12037142-12037222 1.0000 80 chrV:14368394-14368474 1.0000 80 chrIV:103009-103089 1.0000 80 chrIV:9564078-9564158 1.0000 80 chrII:3036467-3036547 1.0000 80 chrV:13202348-13202428 1.0000 80 chrIII:11684955-11685035 1.0000 80 chrX:16327399-16327479 1.0000 80 chrI:2659760-2659840 1.0000 80 chrX:5101024-5101104 1.0000 80 chrIV:10217779-10217859 1.0000 80 chrIV:13083247-13083327 1.0000 80 chrV:1594705-1594785 1.0000 80 chrX:8109748-8109828 1.0000 80 chrX:5078258-5078338 1.0000 80 chrIII:3902719-3902799 1.0000 80 chrIII:7297364-7297444 1.0000 80 chrV:5838775-5838855 1.0000 80 chrX:9446372-9446452 1.0000 80 chrIII:10822699-10822779 1.0000 80 chrX:15161168-15161248 1.0000 80 chrX:4147770-4147850 1.0000 80 chrV:8179068-8179148 1.0000 80 chrI:9736376-9736456 1.0000 80 chrX:8567316-8567396 1.0000 80 chrII:11731365-11731445 1.0000 80 chrIV:9196114-9196194 1.0000 80 chrIII:3619817-3619897 1.0000 80 chrX:17545690-17545770 1.0000 80 chrIII:11738618-11738698 1.0000 80 chrIII:5083446-5083526 1.0000 80 chrX:381135-381215 1.0000 80 chrIV:10275462-10275542 1.0000 80 chrX:8676179-8676259 1.0000 80 chrX:16202331-16202411 1.0000 80 chrV:19533646-19533726 1.0000 80 chrX:11792877-11792957 1.0000 80 chrX:3832289-3832369 1.0000 80 chrIII:7644403-7644483 1.0000 80 chrIV:9376742-9376822 1.0000 80 chrX:8211123-8211203 1.0000 80 chrIII:9269237-9269317 1.0000 80 chrII:6176660-6176740 1.0000 80 chrII:15212614-15212694 1.0000 80 chrX:2841971-2842051 1.0000 80 chrV:11803654-11803734 1.0000 80 chrIV:9868072-9868152 1.0000 80 chrIV:1720959-1721039 1.0000 80 chrX:8819984-8820064 1.0000 80 chrII:14142245-14142325 1.0000 80 chrIII:8986988-8987068 1.0000 80 chrV:1607989-1608069 1.0000 80 chrIV:2130845-2130925 1.0000 80 chrIII:62543-62623 1.0000 80 chrX:3838991-3839071 1.0000 80 chrX:16554141-16554221 1.0000 80 chrIII:8974775-8974855 1.0000 80 chrIV:10976085-10976165 1.0000 80 chrV:203961-204041 1.0000 80 chrIV:13393424-13393504 1.0000 80 chrV:11676621-11676701 1.0000 80 chrIV:11491526-11491606 1.0000 80 chrII:8743585-8743665 1.0000 80 chrIII:9753011-9753091 1.0000 80 chrX:6204912-6204992 1.0000 80 chrV:6240038-6240118 1.0000 80 chrV:1438976-1439056 1.0000 80 chrI:12045649-12045729 1.0000 80 chrIII:7369657-7369737 1.0000 80 chrX:9536237-9536317 1.0000 80 chrII:7272685-7272765 1.0000 80 chrX:4215641-4215721 1.0000 80 chrX:16192710-16192790 1.0000 80 chrX:13772858-13772938 1.0000 80 chrI:9871031-9871111 1.0000 80 chrX:15842687-15842767 1.0000 80 chrV:11859328-11859408 1.0000 80 chrI:3297127-3297207 1.0000 80 chrX:14793100-14793180 1.0000 80 chrIII:13556196-13556276 1.0000 80 chrIII:13071735-13071815 1.0000 80 chrX:12668233-12668313 1.0000 80 chrI:4489555-4489635 1.0000 80 chrI:42232-42312 1.0000 80 chrX:13744953-13745033 1.0000 80 chrIII:3695557-3695637 1.0000 80 chrIV:12835542-12835622 1.0000 80 chrV:4192762-4192842 1.0000 80 chrX:15709770-15709850 1.0000 80 chrV:5763987-5764067 1.0000 80 chrIII:11050854-11050934 1.0000 80 chrX:2240443-2240523 1.0000 80 chrX:15700381-15700461 1.0000 80 chrX:10391321-10391401 1.0000 80 chrX:13541472-13541552 1.0000 80 chrIV:6099951-6100031 1.0000 80 chrX:13920508-13920588 1.0000 80 chrII:13679987-13680067 1.0000 80 chrIV:9672530-9672610 1.0000 80 chrV:16357467-16357547 1.0000 80 chrIV:5778471-5778551 1.0000 80 chrII:13954244-13954324 1.0000 80 chrIV:14445378-14445458 1.0000 80 chrV:12599567-12599647 1.0000 80 chrIV:274342-274422 1.0000 80 chrX:15345912-15345992 1.0000 80 chrIV:2896157-2896237 1.0000 80 chrV:19519745-19519825 1.0000 80 chrV:11196749-11196829 1.0000 80 chrX:9643244-9643324 1.0000 80 chrV:19612131-19612211 1.0000 80 chrIV:12601108-12601188 1.0000 80 chrIII:11496635-11496715 1.0000 80 chrX:5467443-5467523 1.0000 80 chrV:7413460-7413540 1.0000 80 chrI:1296634-1296714 1.0000 80 chrX:6808793-6808873 1.0000 80 chrV:11857945-11858025 1.0000 80 chrIII:8782916-8782996 1.0000 80 chrI:4382436-4382516 1.0000 80 chrX:8080561-8080641 1.0000 80 chrX:11481916-11481996 1.0000 80 chrV:11531178-11531258 1.0000 80 chrIV:12427835-12427915 1.0000 80 chrIII:4922185-4922265 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_lin-40/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/lin-40.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.299 C 0.203 G 0.203 T 0.295 Background letter frequencies (from file dataset with add-one prior applied): A 0.299 C 0.203 G 0.203 T 0.295 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-1 width = 8 sites = 48 llr = 390 E-value = 2.5e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 1::::2:: probability G ::::11:: matrix T 9aaa97aa bits 2.3 2.1 1.8 ** * 1.6 *** * Relative 1.4 ***** ** Entropy 1.2 ***** ** (11.7 bits) 0.9 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15345912-15345992 4 5.74e-05 ATT TTTTTTTT GAAATTGGTT chrX:13744953-13745033 41 5.74e-05 TCTCGTACAC TTTTTTTT TTCAAAAAAG chrIII:7369657-7369737 10 5.74e-05 TTTTGGACA TTTTTTTT TATTTCGAGT chrX:3838991-3839071 16 5.74e-05 GTCGTTGTTG TTTTTTTT TGTCGCTTTC chrIV:2130845-2130925 24 5.74e-05 TTTTGTTGGT TTTTTTTT GAGAGCGACA chrX:15161168-15161248 9 5.74e-05 CTTTTCCT TTTTTTTT GAAGCAAGCG chrIII:10822699-10822779 38 5.74e-05 ATAGGCTAAA TTTTTTTT AATAGAAAAG chrIII:7297364-7297444 71 5.74e-05 AGACAGAAGT TTTTTTTT GC chrI:2659760-2659840 22 5.74e-05 ATTGATTCTC TTTTTTTT CTTTCTGTGT chrII:11637581-11637661 38 5.74e-05 ATTCACAGGT TTTTTTTT AAGTTTTGGA chrIII:2874352-2874432 34 5.74e-05 TCCCTACCAT TTTTTTTT CGGCCGATTC chrV:12302291-12302371 65 5.74e-05 TTGAAAATGT TTTTTTTT CTTTTCTT chrI:4382176-4382256 8 5.74e-05 GTTGTTG TTTTTTTT AACAAGATTA chrII:1315471-1315551 68 5.74e-05 ACGAGAATCT TTTTTTTT TCACT chrI:12571065-12571145 27 5.74e-05 CATTTGGCGG TTTTTTTT GCAAAAAAAA chrIV:5715116-5715196 28 5.74e-05 AAATTTATTT TTTTTTTT CCTTTTTTCC chrX:9617051-9617131 7 5.74e-05 TGTGTT TTTTTTTT GCCCATCAAA chrX:14978949-14979029 42 5.74e-05 TTTCTAATGA TTTTTTTT GAAGTTTGCT chrX:10639574-10639654 17 5.74e-05 TTTTTTTAAG TTTTTTTT CGATTCAGAC chrX:2593018-2593098 26 5.74e-05 TTGTTGAAAC TTTTTTTT CGGTTATGGA chrIV:17474201-17474281 70 5.74e-05 TACACAAAAC TTTTTTTT GAG chrIII:4922185-4922265 8 9.68e-05 AAATCAT TTTTTCTT GTTAATCCTC chrX:6808793-6808873 26 9.68e-05 GCATCCTTCG TTTTTCTT CCCTCTCTAC chrIV:9672530-9672610 18 9.68e-05 atctattcct tttttctt cattctCCCA chrV:203961-204041 10 9.68e-05 GCCTGTCCT TTTTTCTT TACTCTCGCT chrI:2667980-2668060 1 9.68e-05 . TTTTTCTT TCGTCACGTC chrX:12869541-12869621 65 9.68e-05 AGCTTCATCA TTTTTCTT TGTCATAC chrV:5848083-5848163 41 9.68e-05 TGACTTCTCT TTTTTCTT CTTCTTCCAC chrIV:10275462-10275542 13 1.36e-04 CATAAACCCG TTTTTGTT ACACGGAGGA chrII:12352262-12352342 60 1.36e-04 AAAAAAACGG TTTTTGTT CCAAAAAAAT chrI:3121825-3121905 64 1.36e-04 AGATGATGTA TTTTTGTT CCGACCACC chrIII:10337715-10337795 25 1.36e-04 AACAAAAATG TTTTTGTT TAGTGTAAAC chrX:864416-864496 10 1.36e-04 GGAAATAAT TTTTTGTT TGTTAGGTTG chrX:13469388-13469468 42 1.36e-04 AGGTTTGCGA TTTTTGTT TAATTGTTTT chrV:19519745-19519825 10 1.76e-04 TTTTTCACC CTTTTTTT ATAATTTTGT chrIII:13556196-13556276 40 1.76e-04 AATCATCACA CTTTTTTT GGGTAACAAA chrV:11803654-11803734 43 1.76e-04 TCCATTATCG CTTTTTTT CAAAAAAAAA chrII:6176660-6176740 37 1.76e-04 TTTCGATTCC CTTTTTTT GGTTCATCTT chrIII:11684955-11685035 32 1.76e-04 TCTCCACCGT CTTTTTTT GCCACCCCGC chrI:3019832-3019912 14 2.15e-04 TGAAAAAAGG TTTTGTTT ACCTCTCTCT chrIV:15901304-15901384 33 2.15e-04 TCTCACCAAA TTTTGTTT ATTTGACACA chrX:5122541-5122621 30 2.15e-04 AACTTTGACG TTTTGTTT GATTGAAACA chrV:14368394-14368474 67 3.09e-04 CCCATCTCAC TCTTTTTT ATTTTT chrIII:11255208-11255288 29 3.09e-04 TCACAAGGTT TCTTTTTT ATTTCTAGAG chrX:7990470-7990550 33 3.09e-04 TGATAGTCGA CTTTTGTT CTTTGCACTT chrX:14437975-14438055 30 3.36e-04 TGTGACTATC TTTTGCTT CTTTTCCATG chrIV:11491526-11491606 26 4.42e-04 AGATACTTGG TTTTTTTC GCTCGGCGCT chrX:11792877-11792957 26 4.42e-04 CGCGACGTCA TTTTTTTG ATGGTAGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15345912-15345992 5.7e-05 3_[+1]_69 chrX:13744953-13745033 5.7e-05 40_[+1]_32 chrIII:7369657-7369737 5.7e-05 9_[+1]_63 chrX:3838991-3839071 5.7e-05 15_[+1]_57 chrIV:2130845-2130925 5.7e-05 23_[+1]_49 chrX:15161168-15161248 5.7e-05 8_[+1]_64 chrIII:10822699-10822779 5.7e-05 37_[+1]_35 chrIII:7297364-7297444 5.7e-05 70_[+1]_2 chrI:2659760-2659840 5.7e-05 21_[+1]_51 chrII:11637581-11637661 5.7e-05 37_[+1]_35 chrIII:2874352-2874432 5.7e-05 33_[+1]_39 chrV:12302291-12302371 5.7e-05 64_[+1]_8 chrI:4382176-4382256 5.7e-05 7_[+1]_65 chrII:1315471-1315551 5.7e-05 67_[+1]_5 chrI:12571065-12571145 5.7e-05 26_[+1]_46 chrIV:5715116-5715196 5.7e-05 27_[+1]_45 chrX:9617051-9617131 5.7e-05 6_[+1]_66 chrX:14978949-14979029 5.7e-05 41_[+1]_31 chrX:10639574-10639654 5.7e-05 16_[+1]_56 chrX:2593018-2593098 5.7e-05 25_[+1]_47 chrIV:17474201-17474281 5.7e-05 69_[+1]_3 chrIII:4922185-4922265 9.7e-05 7_[+1]_65 chrX:6808793-6808873 9.7e-05 25_[+1]_47 chrIV:9672530-9672610 9.7e-05 17_[+1]_55 chrV:203961-204041 9.7e-05 9_[+1]_63 chrI:2667980-2668060 9.7e-05 [+1]_72 chrX:12869541-12869621 9.7e-05 64_[+1]_8 chrV:5848083-5848163 9.7e-05 40_[+1]_32 chrIV:10275462-10275542 0.00014 12_[+1]_60 chrII:12352262-12352342 0.00014 59_[+1]_13 chrI:3121825-3121905 0.00014 63_[+1]_9 chrIII:10337715-10337795 0.00014 24_[+1]_48 chrX:864416-864496 0.00014 9_[+1]_63 chrX:13469388-13469468 0.00014 41_[+1]_31 chrV:19519745-19519825 0.00018 9_[+1]_63 chrIII:13556196-13556276 0.00018 39_[+1]_33 chrV:11803654-11803734 0.00018 42_[+1]_30 chrII:6176660-6176740 0.00018 36_[+1]_36 chrIII:11684955-11685035 0.00018 31_[+1]_41 chrI:3019832-3019912 0.00022 13_[+1]_59 chrIV:15901304-15901384 0.00022 32_[+1]_40 chrX:5122541-5122621 0.00022 29_[+1]_43 chrV:14368394-14368474 0.00031 66_[+1]_6 chrIII:11255208-11255288 0.00031 28_[+1]_44 chrX:7990470-7990550 0.00031 32_[+1]_40 chrX:14437975-14438055 0.00034 29_[+1]_43 chrIV:11491526-11491606 0.00044 25_[+1]_47 chrX:11792877-11792957 0.00044 25_[+1]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=48 chrX:15345912-15345992 ( 4) TTTTTTTT 1 chrX:13744953-13745033 ( 41) TTTTTTTT 1 chrIII:7369657-7369737 ( 10) TTTTTTTT 1 chrX:3838991-3839071 ( 16) TTTTTTTT 1 chrIV:2130845-2130925 ( 24) TTTTTTTT 1 chrX:15161168-15161248 ( 9) TTTTTTTT 1 chrIII:10822699-10822779 ( 38) TTTTTTTT 1 chrIII:7297364-7297444 ( 71) TTTTTTTT 1 chrI:2659760-2659840 ( 22) TTTTTTTT 1 chrII:11637581-11637661 ( 38) TTTTTTTT 1 chrIII:2874352-2874432 ( 34) TTTTTTTT 1 chrV:12302291-12302371 ( 65) TTTTTTTT 1 chrI:4382176-4382256 ( 8) TTTTTTTT 1 chrII:1315471-1315551 ( 68) TTTTTTTT 1 chrI:12571065-12571145 ( 27) TTTTTTTT 1 chrIV:5715116-5715196 ( 28) TTTTTTTT 1 chrX:9617051-9617131 ( 7) TTTTTTTT 1 chrX:14978949-14979029 ( 42) TTTTTTTT 1 chrX:10639574-10639654 ( 17) TTTTTTTT 1 chrX:2593018-2593098 ( 26) TTTTTTTT 1 chrIV:17474201-17474281 ( 70) TTTTTTTT 1 chrIII:4922185-4922265 ( 8) TTTTTCTT 1 chrX:6808793-6808873 ( 26) TTTTTCTT 1 chrIV:9672530-9672610 ( 18) TTTTTCTT 1 chrV:203961-204041 ( 10) TTTTTCTT 1 chrI:2667980-2668060 ( 1) TTTTTCTT 1 chrX:12869541-12869621 ( 65) TTTTTCTT 1 chrV:5848083-5848163 ( 41) TTTTTCTT 1 chrIV:10275462-10275542 ( 13) TTTTTGTT 1 chrII:12352262-12352342 ( 60) TTTTTGTT 1 chrI:3121825-3121905 ( 64) TTTTTGTT 1 chrIII:10337715-10337795 ( 25) TTTTTGTT 1 chrX:864416-864496 ( 10) TTTTTGTT 1 chrX:13469388-13469468 ( 42) TTTTTGTT 1 chrV:19519745-19519825 ( 10) CTTTTTTT 1 chrIII:13556196-13556276 ( 40) CTTTTTTT 1 chrV:11803654-11803734 ( 43) CTTTTTTT 1 chrII:6176660-6176740 ( 37) CTTTTTTT 1 chrIII:11684955-11685035 ( 32) CTTTTTTT 1 chrI:3019832-3019912 ( 14) TTTTGTTT 1 chrIV:15901304-15901384 ( 33) TTTTGTTT 1 chrX:5122541-5122621 ( 30) TTTTGTTT 1 chrV:14368394-14368474 ( 67) TCTTTTTT 1 chrIII:11255208-11255288 ( 29) TCTTTTTT 1 chrX:7990470-7990550 ( 33) CTTTTGTT 1 chrX:14437975-14438055 ( 30) TTTTGCTT 1 chrIV:11491526-11491606 ( 26) TTTTTTTC 1 chrX:11792877-11792957 ( 26) TTTTTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 2.5e-010 -1223 -70 -1223 157 -1223 -228 -1223 170 -1223 -1223 -1223 176 -1223 -1223 -1223 176 -1223 -1223 -128 164 -1223 -28 -48 122 -1223 -1223 -1223 176 -1223 -328 -328 170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 2.5e-010 0.000000 0.125000 0.000000 0.875000 0.000000 0.041667 0.000000 0.958333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.166667 0.145833 0.687500 0.000000 0.000000 0.000000 1.000000 0.000000 0.020833 0.020833 0.958333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 regular expression -------------------------------------------------------------------------------- TTTTTTTT -------------------------------------------------------------------------------- Time 6.59 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAA MEME-2 width = 8 sites = 71 llr = 511 E-value = 5.5e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 786a8aaa pos.-specific C 3:1::::: probability G :21:2::: matrix T ::2::::: bits 2.3 2.1 1.8 * * * 1.6 * *** Relative 1.4 * *** Entropy 1.2 * ***** (10.4 bits) 0.9 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8080561-8080641 51 6.39e-05 AAAATTATTA AAAAAAAA GCATTACTAC chrIII:8782916-8782996 38 6.39e-05 TGCTTCGTCG AAAAAAAA GCGTCGACAT chrII:13679987-13680067 44 6.39e-05 CAAGCCAAAA AAAAAAAA GAATAAATAT chrV:4192762-4192842 25 6.39e-05 ATTTCGGCGA AAAAAAAA ATTCTTGGAA chrI:4489555-4489635 52 6.39e-05 TGATTTTGCA AAAAAAAA TTGAAATTCC chrV:11803654-11803734 53 6.39e-05 CTTTTTTTCA AAAAAAAA ATTACGGGAA chrIV:9376742-9376822 6 6.39e-05 agaaa aaaaaaaa aaGTTTTGAG chrX:3832289-3832369 27 6.39e-05 GTTTGTGAGA AAAAAAAA ACCGTCAATC chrIV:3874578-3874658 28 6.39e-05 GGGAAACCCG AAAAAAAA ATCTCCATAG chrII:12352262-12352342 48 6.39e-05 GGGAAAAAGA AAAAAAAA ACGGTTTTTG chrX:16725118-16725198 71 6.39e-05 GCAGCGGTGG AAAAAAAA GT chrII:9493392-9493472 30 6.39e-05 AAAAGTGTGA AAAAAAAA AGAAAAGTCG chrX:16775492-16775572 25 6.39e-05 TCAAAATCAG AAAAAAAA AGAATCAGAA chrX:12180937-12181017 66 6.39e-05 TTGAGATAGG AAAAAAAA TTGGCGA chrIV:1718222-1718302 65 6.39e-05 GGAAGAAGGA AAAAAAAA TCACAGAA chrI:12571065-12571145 37 6.39e-05 TTTTTTTTGC AAAAAAAA TTTGGAGATG chrX:1124288-1124368 29 6.39e-05 AAAATGATAG AAAAAAAA CAAGATTGAC chrIV:5715116-5715196 6 6.39e-05 TACCC AAAAAAAA GTAAAAATTT chrV:8449317-8449397 48 6.39e-05 CAAAAACCGC AAAAAAAA CGACTTCGTT chrIV:626270-626350 14 6.39e-05 ATTACAATTT AAAAAAAA TGTTCTCAAA chrV:11676621-11676701 29 1.07e-04 ATCACCTTCC CAAAAAAA GATAGTCAGA chrX:8109748-8109828 7 1.07e-04 AATGCC CAAAAAAA TGTTGGACGA chrV:13202348-13202428 35 1.07e-04 CCTCGAAATA CAAAAAAA GAGAGAAGTA chrX:5653977-5654057 9 1.07e-04 GCAGACAG CAAAAAAA TGTTTGCACT chrII:10016229-10016309 47 1.07e-04 ACTGGGGGCA CAAAAAAA GAAACACGGG chrX:5467443-5467523 70 1.51e-04 TGCAGTATAT AGAAAAAA TCG chrIII:11496635-11496715 68 1.51e-04 GTCATAAGTG AGAAAAAA TGTCT chrX:15345912-15345992 73 1.51e-04 CAGTTTGCAA AGAAAAAA chrV:1438976-1439056 63 1.51e-04 TGTGAAAACA AGAAAAAA ATCTTGTCCC chrX:14979151-14979231 73 1.51e-04 AAGCAAAAGT AGAAAAAA chrII:15205410-15205490 38 1.51e-04 GAAAAAATGA AGAAAAAA GTGATCGGAA chrX:12668233-12668313 43 1.94e-04 AATGTTTCAA AACAAAAA GACCATTCTA chrX:9536237-9536317 6 1.94e-04 CAATG AACAAAAA TATCTGGTTT chrV:8179068-8179148 52 1.94e-04 TAGCGTAACA AACAAAAA AGTAGAATTC chrIII:10337715-10337795 15 1.94e-04 AATTTTTCGA AACAAAAA TGTTTTTGTT chrX:3117322-3117402 10 1.94e-04 CCCACAAAA AACAAAAA ATAAGTTTTT chrV:12599567-12599647 67 3.00e-04 TTCCAATTCA AATAAAAA AGGCGT chrV:16357467-16357547 17 3.00e-04 actctctcGC AATAAAAA ATCAATATAT chrIV:6099951-6100031 4 3.00e-04 ACC AATAAAAA CGGGGGAATC chrIII:9753011-9753091 68 3.00e-04 ACTAATCAAC AATAAAAA CAAGA chrX:17545690-17545770 52 3.00e-04 CTCCCTTCGC AATAAAAA TGAAAAAGGG chrI:3019832-3019912 68 3.00e-04 CGGAGACGGA AAAAGAAA GAAAA chrII:11637581-11637661 21 3.00e-04 AAGTTCAGTG AAAAGAAA TTCACAGGTT chrIV:1715987-1716067 37 3.00e-04 AACAGAAAAT AAAAGAAA TAACAACAAA chrI:4382176-4382256 27 3.00e-04 ACAAGATTAA AATAAAAA TCTTGATTTT chrX:12425605-12425685 31 3.00e-04 CCAAAATGCA AAAAGAAA AAGAGAGAGA chrV:1607989-1608069 6 3.44e-04 TCGCG AAGAAAAA GGCCGAGGGC chrX:11198718-11198798 63 3.44e-04 gacgacggag aagaaaaa ggtgaaagaa chrIII:7644403-7644483 73 3.73e-04 AAGAAGATGA CGAAAAAA chrIV:9196114-9196194 22 3.73e-04 CTATTAAACT CGAAAAAA TTGGCCAAAA chrI:9736376-9736456 17 3.73e-04 AACTTCCTGT CGAAAAAA GATTCAATCT chrIV:6792514-6792594 1 3.73e-04 . CGAAAAAA TTTCAAATCC chrX:978424-978504 71 3.73e-04 TTGTTATCAC CGAAAAAA CT chrX:11481916-11481996 53 4.03e-04 GGAATTTATA CACAAAAA GAAGACATTA chrII:7944557-7944637 33 4.03e-04 CCGTCATCTC CACAAAAA GCTTTATCTC chrX:2841971-2842051 40 4.75e-04 AGATAATATt cataaaaa tcataaaaat chrX:16405869-16405949 38 4.75e-04 TCCAAATCAT CAAAGAAA TAAAATTAGG chrII:10707327-10707407 41 4.75e-04 GAGTAAGTAC CATAAAAA TACTTTGTTT chrIV:274342-274422 72 6.06e-04 TCTTTAAAAC AGTAAAAA G chrX:403130-403210 65 6.35e-04 GAATTTTTCT AACAGAAA CGCAGACA chrV:11857945-11858025 65 7.08e-04 CTGACATAGA AATAGAAA TAGAGAAA chrIII:10822699-10822779 46 7.08e-04 AATTTTTTTT AATAGAAA AGTGTGAAAT chrV:11094898-11094978 72 7.08e-04 ACACTGAGAC AGGAAAAA T chrIII:11262173-11262253 28 7.51e-04 CTAATTAGAC AAAAAAGA AGACGATTGT chrIV:1720959-1721039 26 8.01e-04 TTTAGTCGTG AAGAGAAA TGCTTATGGA chrIV:9868072-9868152 72 8.01e-04 ATCAAAAAGG AAGAGAAA A chrX:381135-381215 18 8.01e-04 ATATCTTACG CGCAAAAA GCACCTGTGT chrIV:1721728-1721808 61 8.01e-04 ATACAGAAGC AAGAGAAA CTCTTACGGA chrX:2240443-2240523 41 1.01e-03 TCCAGAAAGT GAAAAAAA TGCTGATTGT chrX:15709770-15709850 64 1.01e-03 TTCTCTCTGT CAAAAAGA TAGATACAT chrX:9617051-9617131 60 1.01e-03 GTGATTCTTT CAAAAAGA TTGGCAGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8080561-8080641 6.4e-05 50_[+2]_22 chrIII:8782916-8782996 6.4e-05 37_[+2]_35 chrII:13679987-13680067 6.4e-05 43_[+2]_29 chrV:4192762-4192842 6.4e-05 24_[+2]_48 chrI:4489555-4489635 6.4e-05 51_[+2]_21 chrV:11803654-11803734 6.4e-05 52_[+2]_20 chrIV:9376742-9376822 6.4e-05 5_[+2]_67 chrX:3832289-3832369 6.4e-05 26_[+2]_46 chrIV:3874578-3874658 6.4e-05 27_[+2]_45 chrII:12352262-12352342 6.4e-05 47_[+2]_25 chrX:16725118-16725198 6.4e-05 70_[+2]_2 chrII:9493392-9493472 6.4e-05 29_[+2]_43 chrX:16775492-16775572 6.4e-05 24_[+2]_48 chrX:12180937-12181017 6.4e-05 65_[+2]_7 chrIV:1718222-1718302 6.4e-05 64_[+2]_8 chrI:12571065-12571145 6.4e-05 36_[+2]_36 chrX:1124288-1124368 6.4e-05 28_[+2]_44 chrIV:5715116-5715196 6.4e-05 5_[+2]_67 chrV:8449317-8449397 6.4e-05 47_[+2]_25 chrIV:626270-626350 6.4e-05 13_[+2]_59 chrV:11676621-11676701 0.00011 28_[+2]_44 chrX:8109748-8109828 0.00011 6_[+2]_66 chrV:13202348-13202428 0.00011 34_[+2]_38 chrX:5653977-5654057 0.00011 8_[+2]_64 chrII:10016229-10016309 0.00011 46_[+2]_26 chrX:5467443-5467523 0.00015 69_[+2]_3 chrIII:11496635-11496715 0.00015 67_[+2]_5 chrX:15345912-15345992 0.00015 72_[+2] chrV:1438976-1439056 0.00015 62_[+2]_10 chrX:14979151-14979231 0.00015 72_[+2] chrII:15205410-15205490 0.00015 37_[+2]_35 chrX:12668233-12668313 0.00019 42_[+2]_30 chrX:9536237-9536317 0.00019 5_[+2]_67 chrV:8179068-8179148 0.00019 51_[+2]_21 chrIII:10337715-10337795 0.00019 14_[+2]_58 chrX:3117322-3117402 0.00019 9_[+2]_63 chrV:12599567-12599647 0.0003 66_[+2]_6 chrV:16357467-16357547 0.0003 16_[+2]_56 chrIV:6099951-6100031 0.0003 3_[+2]_69 chrIII:9753011-9753091 0.0003 67_[+2]_5 chrX:17545690-17545770 0.0003 51_[+2]_21 chrI:3019832-3019912 0.0003 67_[+2]_5 chrII:11637581-11637661 0.0003 20_[+2]_52 chrIV:1715987-1716067 0.0003 36_[+2]_36 chrI:4382176-4382256 0.0003 26_[+2]_46 chrX:12425605-12425685 0.0003 30_[+2]_42 chrV:1607989-1608069 0.00034 5_[+2]_67 chrX:11198718-11198798 0.00034 62_[+2]_10 chrIII:7644403-7644483 0.00037 72_[+2] chrIV:9196114-9196194 0.00037 21_[+2]_51 chrI:9736376-9736456 0.00037 16_[+2]_56 chrIV:6792514-6792594 0.00037 [+2]_72 chrX:978424-978504 0.00037 70_[+2]_2 chrX:11481916-11481996 0.0004 52_[+2]_20 chrII:7944557-7944637 0.0004 32_[+2]_40 chrX:2841971-2842051 0.00047 39_[+2]_33 chrX:16405869-16405949 0.00047 37_[+2]_35 chrII:10707327-10707407 0.00047 40_[+2]_32 chrIV:274342-274422 0.00061 71_[+2]_1 chrX:403130-403210 0.00064 64_[+2]_8 chrV:11857945-11858025 0.00071 64_[+2]_8 chrIII:10822699-10822779 0.00071 45_[+2]_27 chrV:11094898-11094978 0.00071 71_[+2]_1 chrIII:11262173-11262253 0.00075 27_[+2]_45 chrIV:1720959-1721039 0.0008 25_[+2]_47 chrIV:9868072-9868152 0.0008 71_[+2]_1 chrX:381135-381215 0.0008 17_[+2]_55 chrIV:1721728-1721808 0.0008 60_[+2]_12 chrX:2240443-2240523 0.001 40_[+2]_32 chrX:15709770-15709850 0.001 63_[+2]_9 chrX:9617051-9617131 0.001 59_[+2]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAA width=8 seqs=71 chrX:8080561-8080641 ( 51) AAAAAAAA 1 chrIII:8782916-8782996 ( 38) AAAAAAAA 1 chrII:13679987-13680067 ( 44) AAAAAAAA 1 chrV:4192762-4192842 ( 25) AAAAAAAA 1 chrI:4489555-4489635 ( 52) AAAAAAAA 1 chrV:11803654-11803734 ( 53) AAAAAAAA 1 chrIV:9376742-9376822 ( 6) AAAAAAAA 1 chrX:3832289-3832369 ( 27) AAAAAAAA 1 chrIV:3874578-3874658 ( 28) AAAAAAAA 1 chrII:12352262-12352342 ( 48) AAAAAAAA 1 chrX:16725118-16725198 ( 71) AAAAAAAA 1 chrII:9493392-9493472 ( 30) AAAAAAAA 1 chrX:16775492-16775572 ( 25) AAAAAAAA 1 chrX:12180937-12181017 ( 66) AAAAAAAA 1 chrIV:1718222-1718302 ( 65) AAAAAAAA 1 chrI:12571065-12571145 ( 37) AAAAAAAA 1 chrX:1124288-1124368 ( 29) AAAAAAAA 1 chrIV:5715116-5715196 ( 6) AAAAAAAA 1 chrV:8449317-8449397 ( 48) AAAAAAAA 1 chrIV:626270-626350 ( 14) AAAAAAAA 1 chrV:11676621-11676701 ( 29) CAAAAAAA 1 chrX:8109748-8109828 ( 7) CAAAAAAA 1 chrV:13202348-13202428 ( 35) CAAAAAAA 1 chrX:5653977-5654057 ( 9) CAAAAAAA 1 chrII:10016229-10016309 ( 47) CAAAAAAA 1 chrX:5467443-5467523 ( 70) AGAAAAAA 1 chrIII:11496635-11496715 ( 68) AGAAAAAA 1 chrX:15345912-15345992 ( 73) AGAAAAAA 1 chrV:1438976-1439056 ( 63) AGAAAAAA 1 chrX:14979151-14979231 ( 73) AGAAAAAA 1 chrII:15205410-15205490 ( 38) AGAAAAAA 1 chrX:12668233-12668313 ( 43) AACAAAAA 1 chrX:9536237-9536317 ( 6) AACAAAAA 1 chrV:8179068-8179148 ( 52) AACAAAAA 1 chrIII:10337715-10337795 ( 15) AACAAAAA 1 chrX:3117322-3117402 ( 10) AACAAAAA 1 chrV:12599567-12599647 ( 67) AATAAAAA 1 chrV:16357467-16357547 ( 17) AATAAAAA 1 chrIV:6099951-6100031 ( 4) AATAAAAA 1 chrIII:9753011-9753091 ( 68) AATAAAAA 1 chrX:17545690-17545770 ( 52) AATAAAAA 1 chrI:3019832-3019912 ( 68) AAAAGAAA 1 chrII:11637581-11637661 ( 21) AAAAGAAA 1 chrIV:1715987-1716067 ( 37) AAAAGAAA 1 chrI:4382176-4382256 ( 27) AATAAAAA 1 chrX:12425605-12425685 ( 31) AAAAGAAA 1 chrV:1607989-1608069 ( 6) AAGAAAAA 1 chrX:11198718-11198798 ( 63) AAGAAAAA 1 chrIII:7644403-7644483 ( 73) CGAAAAAA 1 chrIV:9196114-9196194 ( 22) CGAAAAAA 1 chrI:9736376-9736456 ( 17) CGAAAAAA 1 chrIV:6792514-6792594 ( 1) CGAAAAAA 1 chrX:978424-978504 ( 71) CGAAAAAA 1 chrX:11481916-11481996 ( 53) CACAAAAA 1 chrII:7944557-7944637 ( 33) CACAAAAA 1 chrX:2841971-2842051 ( 40) CATAAAAA 1 chrX:16405869-16405949 ( 38) CAAAGAAA 1 chrII:10707327-10707407 ( 41) CATAAAAA 1 chrIV:274342-274422 ( 72) AGTAAAAA 1 chrX:403130-403210 ( 65) AACAGAAA 1 chrV:11857945-11858025 ( 65) AATAGAAA 1 chrIII:10822699-10822779 ( 46) AATAGAAA 1 chrV:11094898-11094978 ( 72) AGGAAAAA 1 chrIII:11262173-11262253 ( 28) AAAAAAGA 1 chrIV:1720959-1721039 ( 26) AAGAGAAA 1 chrIV:9868072-9868152 ( 72) AAGAGAAA 1 chrX:381135-381215 ( 18) CGCAAAAA 1 chrIV:1721728-1721808 ( 61) AAGAGAAA 1 chrX:2240443-2240523 ( 41) GAAAAAAA 1 chrX:15709770-15709850 ( 64) CAAAAAGA 1 chrX:9617051-9617131 ( 60) CAAAAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.39859 E= 5.5e-006 129 32 -385 -1279 142 -1279 -4 -1279 108 -68 -126 -93 174 -1279 -1279 -1279 150 -1279 -39 -1279 174 -1279 -1279 -1279 168 -1279 -226 -1279 174 -1279 -1279 -1279 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 71 E= 5.5e-006 0.732394 0.253521 0.014085 0.000000 0.802817 0.000000 0.197183 0.000000 0.633803 0.126761 0.084507 0.154930 1.000000 0.000000 0.000000 0.000000 0.845070 0.000000 0.154930 0.000000 1.000000 0.000000 0.000000 0.000000 0.957746 0.000000 0.042254 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 regular expression -------------------------------------------------------------------------------- [AC]AAAAAAA -------------------------------------------------------------------------------- Time 10.27 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCGTCTC MEME-3 width = 8 sites = 14 llr = 138 E-value = 3.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::8::a:a probability G 37:a:::: matrix T 732:a:a: bits 2.3 * * * 2.1 * * * 1.8 ***** 1.6 ***** Relative 1.4 ******* Entropy 1.2 ******** (14.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGCGTCTC consensus GTT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:13071735-13071815 18 8.85e-06 TTCTTTTCTC TGCGTCTC TTCGTCTCCA chrX:4215641-4215721 43 8.85e-06 GATACGTAAT TGCGTCTC TCGGATGAGA chrV:203961-204041 32 8.85e-06 CTCGCTTCTC TGCGTCTC TCCGATTTGC chrV:14368394-14368474 4 8.85e-06 TGC TGCGTCTC CACATGGCGC chrI:2667980-2668060 19 8.85e-06 TCGTCACGTC TGCGTCTC ACGCTCTCCA chrIV:15901304-15901384 19 8.85e-06 AAAAAATGTC TGCGTCTC ACCAAATTTT chrIV:12427835-12427915 44 1.49e-05 ctggtgctcc ggcgtctc ctggtgctcc chrX:15709770-15709850 42 2.78e-05 AGAGAGACGT TTCGTCTC AACGTTCTCT chrX:381135-381215 31 4.07e-05 AAAAAGCACC TGTGTCTC TTTTCTCGAA chrII:3951507-3951587 69 4.07e-05 AGtctctctc tgtgtctc tcca chrX:10689906-10689986 36 4.07e-05 GTTGCCTCAC TGTGTCTC CTGAGAAACT chrX:13920508-13920588 36 4.95e-05 CCACATCGTC GTCGTCTC CTTCTAAGCG chrII:15212614-15212694 37 4.95e-05 CATGATGATC GTCGTCTC GCACATCTGT chrII:1315471-1315551 31 4.95e-05 TCTTTTCCGT GTCGTCTC GTTTAGTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:13071735-13071815 8.9e-06 17_[+3]_55 chrX:4215641-4215721 8.9e-06 42_[+3]_30 chrV:203961-204041 8.9e-06 31_[+3]_41 chrV:14368394-14368474 8.9e-06 3_[+3]_69 chrI:2667980-2668060 8.9e-06 18_[+3]_54 chrIV:15901304-15901384 8.9e-06 18_[+3]_54 chrIV:12427835-12427915 1.5e-05 43_[+3]_29 chrX:15709770-15709850 2.8e-05 41_[+3]_31 chrX:381135-381215 4.1e-05 30_[+3]_42 chrII:3951507-3951587 4.1e-05 68_[+3]_4 chrX:10689906-10689986 4.1e-05 35_[+3]_37 chrX:13920508-13920588 5e-05 35_[+3]_37 chrII:15212614-15212694 5e-05 36_[+3]_36 chrII:1315471-1315551 5e-05 30_[+3]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGTCTC width=8 seqs=14 chrIII:13071735-13071815 ( 18) TGCGTCTC 1 chrX:4215641-4215721 ( 43) TGCGTCTC 1 chrV:203961-204041 ( 32) TGCGTCTC 1 chrV:14368394-14368474 ( 4) TGCGTCTC 1 chrI:2667980-2668060 ( 19) TGCGTCTC 1 chrIV:15901304-15901384 ( 19) TGCGTCTC 1 chrIV:12427835-12427915 ( 44) GGCGTCTC 1 chrX:15709770-15709850 ( 42) TTCGTCTC 1 chrX:381135-381215 ( 31) TGTGTCTC 1 chrII:3951507-3951587 ( 69) TGTGTCTC 1 chrX:10689906-10689986 ( 36) TGTGTCTC 1 chrX:13920508-13920588 ( 36) GTCGTCTC 1 chrII:15212614-15212694 ( 37) GTCGTCTC 1 chrII:1315471-1315551 ( 31) GTCGTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.0178 E= 3.6e+002 -1045 -1045 49 128 -1045 -1045 182 -5 -1045 195 -1045 -46 -1045 -1045 230 -1045 -1045 -1045 -1045 176 -1045 230 -1045 -1045 -1045 -1045 -1045 176 -1045 230 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 3.6e+002 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.714286 0.285714 0.000000 0.785714 0.000000 0.214286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 regular expression -------------------------------------------------------------------------------- [TG][GT][CT]GTCTC -------------------------------------------------------------------------------- Time 13.85 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCSMAGG MEME-4 width = 8 sites = 17 llr = 157 E-value = 5.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCSMAGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::4a:1 pos.-specific C a1955:1: probability G :9:51:99 matrix T ::1:1::: bits 2.3 * 2.1 ** * 1.8 ** ** 1.6 *** *** Relative 1.4 **** *** Entropy 1.2 **** *** (13.3 bits) 0.9 **** *** 0.7 **** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCCCAGG consensus GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCSMAGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:10707800-10707880 42 4.25e-06 AAACCCAGGA CGCCCAGG ACAATCTGGA chrIV:10216826-10216906 23 4.25e-06 AAGCGCTGGA CGCCCAGG AAAGCCAGGA chrX:17545690-17545770 25 8.50e-06 ATTCCCTCTT CGCGCAGG ATTGTTATTC chrX:8104029-8104109 29 8.50e-06 TTGTCGTTGT CGCGCAGG CCACGATAAT chrIII:8974775-8974855 19 1.48e-05 TTTTGCAGGT CGCCAAGG AACTCGGAGA chrIII:5083446-5083526 69 1.48e-05 TGGAAGAAGT CGCCAAGG TTCG chrII:3036467-3036547 40 1.48e-05 ACGAGAAACG CGCCAAGG CACTAGGAAT chrV:18573337-18573417 21 1.48e-05 TCGAGAAATG CGCCAAGG TAGCTTGCTG chrX:1492331-1492411 9 2.10e-05 ATTCATAT CGCGAAGG GTGCATATAT chrX:8048805-8048885 27 2.95e-05 ATAATTGTAT CGCGGAGG GAGAATCAAG chrV:16357467-16357547 57 4.19e-05 TTTGCAGAAG CGCCCAGA AATCTCTCTC chrX:422164-422244 54 4.19e-05 CCCACCAGGA CGTCCAGG ACCAAAAGGA chrII:6562235-6562315 20 6.05e-05 GATAAAAAGG CGTGCAGG CAAAGAGAAC chrV:1594705-1594785 18 6.67e-05 GATCTCCGGG CGCGTAGG CATTTTCGCG chrII:13016555-13016635 16 8.37e-05 GACATGTGTC CCCGCAGG GTGGTAAGGC chrII:10016229-10016309 69 8.37e-05 CACGGGGCGC CGCGCACG CGTG chrX:2559557-2559637 16 1.02e-04 ACAAGAAACG CGCCAAGA AAACTAAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCSMAGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:10707800-10707880 4.2e-06 41_[+4]_31 chrIV:10216826-10216906 4.2e-06 22_[+4]_50 chrX:17545690-17545770 8.5e-06 24_[+4]_48 chrX:8104029-8104109 8.5e-06 28_[+4]_44 chrIII:8974775-8974855 1.5e-05 18_[+4]_54 chrIII:5083446-5083526 1.5e-05 68_[+4]_4 chrII:3036467-3036547 1.5e-05 39_[+4]_33 chrV:18573337-18573417 1.5e-05 20_[+4]_52 chrX:1492331-1492411 2.1e-05 8_[+4]_64 chrX:8048805-8048885 3e-05 26_[+4]_46 chrV:16357467-16357547 4.2e-05 56_[+4]_16 chrX:422164-422244 4.2e-05 53_[+4]_19 chrII:6562235-6562315 6.1e-05 19_[+4]_53 chrV:1594705-1594785 6.7e-05 17_[+4]_55 chrII:13016555-13016635 8.4e-05 15_[+4]_57 chrII:10016229-10016309 8.4e-05 68_[+4]_4 chrX:2559557-2559637 0.0001 15_[+4]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCSMAGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCSMAGG width=8 seqs=17 chrII:10707800-10707880 ( 42) CGCCCAGG 1 chrIV:10216826-10216906 ( 23) CGCCCAGG 1 chrX:17545690-17545770 ( 25) CGCGCAGG 1 chrX:8104029-8104109 ( 29) CGCGCAGG 1 chrIII:8974775-8974855 ( 19) CGCCAAGG 1 chrIII:5083446-5083526 ( 69) CGCCAAGG 1 chrII:3036467-3036547 ( 40) CGCCAAGG 1 chrV:18573337-18573417 ( 21) CGCCAAGG 1 chrX:1492331-1492411 ( 9) CGCGAAGG 1 chrX:8048805-8048885 ( 27) CGCGGAGG 1 chrV:16357467-16357547 ( 57) CGCCCAGA 1 chrX:422164-422244 ( 54) CGTCCAGG 1 chrII:6562235-6562315 ( 20) CGTGCAGG 1 chrV:1594705-1594785 ( 18) CGCGTAGG 1 chrII:13016555-13016635 ( 16) CCCGCAGG 1 chrII:10016229-10016309 ( 69) CGCGCACG 1 chrX:2559557-2559637 ( 16) CGCCAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCSMAGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8621 E= 5.4e+003 -1073 230 -1073 -1073 -1073 -178 221 -1073 -1073 212 -1073 -132 -1073 138 121 -1073 24 138 -178 -232 174 -1073 -1073 -1073 -1073 -178 221 -1073 -135 -1073 212 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCSMAGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 5.4e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.058824 0.941176 0.000000 0.000000 0.882353 0.000000 0.117647 0.000000 0.529412 0.470588 0.000000 0.352941 0.529412 0.058824 0.058824 1.000000 0.000000 0.000000 0.000000 0.000000 0.058824 0.941176 0.000000 0.117647 0.000000 0.882353 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCSMAGG MEME-4 regular expression -------------------------------------------------------------------------------- CGC[CG][CA]AGG -------------------------------------------------------------------------------- Time 17.34 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGGCGG MEME-5 width = 8 sites = 2 llr = 25 E-value = 2.2e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGGCGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::a:: probability G a:aaa:aa matrix T :a:::::: bits 2.3 * ****** 2.1 * ****** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGGGCGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGCGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:4382436-4382516 2 4.19e-06 T GTGGGCGG GGTCAATCCC chrII:13016555-13016635 61 4.19e-06 AGTGTGGTGG GTGGGCGG AGATTCCTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGCGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:4382436-4382516 4.2e-06 1_[+5]_71 chrII:13016555-13016635 4.2e-06 60_[+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGCGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGGCGG width=8 seqs=2 chrI:4382436-4382516 ( 2) GTGGGCGG 1 chrII:13016555-13016635 ( 61) GTGGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGCGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 2.2e+005 -765 -765 230 -765 -765 -765 -765 176 -765 -765 230 -765 -765 -765 230 -765 -765 -765 230 -765 -765 230 -765 -765 -765 -765 230 -765 -765 -765 230 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGCGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.2e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGCGG MEME-5 regular expression -------------------------------------------------------------------------------- GTGGGCGG -------------------------------------------------------------------------------- Time 20.85 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:421949-422029 4.79e-01 80 chrIV:1721728-1721808 4.59e-01 80 chrX:17255936-17256016 3.33e-01 52_[+2(6.39e-05)]_3_[+2(6.39e-05)]_\ [+2(6.39e-05)]_1 chrIV:17474201-17474281 1.54e-01 69_[+1(5.74e-05)]_3 chrV:5836467-5836547 3.45e-01 80 chrII:6562235-6562315 2.02e-02 19_[+4(6.05e-05)]_53 chrX:2593018-2593098 1.49e-01 25_[+1(5.74e-05)]_47 chrV:18638330-18638410 6.37e-01 80 chrX:10689906-10689986 2.07e-02 35_[+3(4.07e-05)]_37 chrIV:10216826-10216906 4.63e-02 22_[+4(4.25e-06)]_50 chrX:7990470-7990550 1.81e-01 80 chrII:10707572-10707652 9.72e-01 80 chrX:403130-403210 2.34e-01 80 chrX:8048805-8048885 5.29e-03 26_[+4(2.95e-05)]_46 chrX:422164-422244 2.28e-01 53_[+4(4.19e-05)]_19 chrIV:626270-626350 1.04e-01 13_[+2(6.39e-05)]_59 chrX:10668032-10668112 8.80e-01 80 chrIII:12843010-12843090 3.70e-01 80 chrV:5836692-5836772 1.19e-01 80 chrX:13469388-13469468 7.99e-02 80 chrII:10707327-10707407 2.25e-02 80 chrX:10639574-10639654 4.35e-02 4_[+1(5.74e-05)]_4_[+1(5.74e-05)]_\ 56 chrX:12425605-12425685 1.10e-01 80 chrV:18638598-18638678 6.73e-01 80 chrX:12105350-12105430 5.56e-01 80 chrX:16290738-16290818 6.24e-01 80 chrX:1339085-1339165 9.58e-01 80 chrIV:14098787-14098867 7.65e-01 80 chrX:15706284-15706364 7.97e-01 80 chrX:1492331-1492411 2.69e-02 8_[+4(2.10e-05)]_64 chrX:16405869-16405949 2.74e-01 80 chrX:3117322-3117402 2.08e-01 80 chrX:15036485-15036565 5.77e-01 80 chrI:10514300-10514380 8.99e-01 80 chrX:8104029-8104109 6.46e-03 28_[+4(8.50e-06)]_44 chrV:4653735-4653815 7.66e-03 80 chrV:8449317-8449397 2.64e-02 47_[+2(6.39e-05)]_25 chrIV:17471542-17471622 8.99e-01 80 chrV:11094898-11094978 4.71e-01 80 chrX:9147141-9147221 2.46e-01 80 chrV:18573337-18573417 6.58e-02 20_[+4(1.48e-05)]_52 chrIII:11262173-11262253 4.12e-01 80 chrIV:9563722-9563802 7.18e-01 80 chrX:14978949-14979029 2.95e-01 41_[+1(5.74e-05)]_31 chrIV:1459561-1459641 5.03e-01 80 chrX:9617051-9617131 2.65e-02 4_[+1(5.74e-05)]_68 chrX:14477558-14477638 2.81e-01 80 chrII:10016229-10016309 1.16e-03 68_[+4(8.37e-05)]_4 chrIV:10217035-10217115 7.01e-01 80 chrII:14838768-14838848 1.12e-01 80 chrII:10707800-10707880 2.87e-02 41_[+4(4.25e-06)]_31 chrX:5122541-5122621 5.24e-02 80 chrX:13420143-13420223 9.85e-01 80 chrIV:5715116-5715196 1.02e-02 5_[+2(6.39e-05)]_11_[+1(5.74e-05)]_\ 48 chrX:1124288-1124368 3.02e-01 28_[+2(6.39e-05)]_44 chrIII:11255208-11255288 3.73e-01 80 chrI:12571065-12571145 2.62e-03 26_[+1(5.74e-05)]_2_[+2(6.39e-05)]_\ 36 chrIV:15398787-15398867 6.67e-01 80 chrII:5886162-5886242 6.97e-01 80 chrIV:1718222-1718302 2.51e-01 63_[+2(6.39e-05)]_9 chrII:1315471-1315551 1.09e-02 30_[+3(4.95e-05)]_28_[+1(5.74e-05)]_\ 6 chrIV:8979659-8979739 8.32e-01 80 chrI:4382176-4382256 1.41e-03 7_[+1(5.74e-05)]_65 chrV:5823136-5823216 6.39e-01 80 chrIII:8370959-8371039 3.87e-01 80 chrIV:8042229-8042309 5.91e-01 80 chrX:5653977-5654057 2.99e-01 80 chrIV:763479-763559 4.77e-01 80 chrI:5025527-5025607 2.68e-01 80 chrII:3951507-3951587 8.18e-02 68_[+3(4.07e-05)]_4 chrX:12422703-12422783 5.82e-01 80 chrII:11836701-11836781 7.13e-01 80 chrX:12180937-12181017 7.23e-03 65_[+2(6.39e-05)]_7 chrV:12302291-12302371 5.75e-03 63_[+1(5.74e-05)]_9 chrX:2893117-2893197 9.56e-01 80 chrX:16775492-16775572 1.66e-01 24_[+2(6.39e-05)]_48 chrII:5049447-5049527 2.81e-01 80 chrX:4193253-4193333 7.95e-01 80 chrX:14357055-14357135 8.27e-01 80 chrV:5848083-5848163 3.41e-02 40_[+1(9.68e-05)]_32 chrV:18639747-18639827 6.39e-01 80 chrV:6238568-6238648 1.05e-01 80 chrIV:12110067-12110147 7.71e-01 80 chrII:15251799-15251879 8.44e-01 80 chrV:11087410-11087490 2.86e-01 80 chrX:11198718-11198798 6.75e-02 80 chrX:864416-864496 3.79e-01 80 chrIV:15901304-15901384 2.84e-03 18_[+3(8.85e-06)]_54 chrII:15205410-15205490 1.53e-01 80 chrX:978424-978504 3.32e-01 80 chrI:12501390-12501470 4.20e-01 80 chrII:9493392-9493472 9.48e-03 28_[+2(6.39e-05)]_44 chrX:9528047-9528127 5.03e-01 80 chrX:14500792-14500872 7.97e-01 80 chrX:12869541-12869621 3.08e-01 64_[+1(9.68e-05)]_8 chrX:1443749-1443829 9.12e-01 80 chrIII:10337715-10337795 3.26e-02 80 chrV:5587252-5587332 8.55e-01 80 chrX:16725118-16725198 5.11e-02 70_[+2(6.39e-05)]_2 chrX:14783752-14783832 1.14e-01 80 chrI:3121825-3121905 1.26e-01 80 chrII:9161213-9161293 8.84e-02 80 chrX:2559557-2559637 9.12e-03 80 chrIII:7722563-7722643 1.64e-01 80 chrIV:1715987-1716067 6.09e-01 80 chrV:18569571-18569651 3.90e-01 80 chrI:9320112-9320192 7.58e-01 80 chrIII:2874352-2874432 3.35e-02 32_[+1(5.74e-05)]_40 chrIII:7872933-7873013 9.55e-01 80 chrX:14707062-14707142 9.79e-01 80 chrII:11637581-11637661 4.28e-02 36_[+1(5.74e-05)]_36 chrII:7944557-7944637 7.87e-02 80 chrX:1478054-1478134 7.23e-01 80 chrX:1026847-1026927 2.80e-01 80 chrI:2667980-2668060 1.36e-03 [+1(9.68e-05)]_10_[+3(8.85e-06)]_18_\ [+3(4.95e-05)]_28 chrV:10953805-10953885 9.89e-01 80 chrI:3019832-3019912 1.67e-02 80 chrII:12352262-12352342 4.11e-03 46_[+2(6.39e-05)]_26 chrII:13016555-13016635 1.18e-04 15_[+4(8.37e-05)]_37_[+5(4.19e-06)]_\ 12 chrIV:3874578-3874658 1.38e-01 27_[+2(6.39e-05)]_45 chrX:14437975-14438055 1.10e-01 80 chrIV:6792514-6792594 4.66e-01 80 chrX:14979151-14979231 1.81e-01 80 chrIII:7723841-7723921 1.14e-01 80 chrX:17466720-17466800 6.08e-01 80 chrIV:12037142-12037222 4.59e-01 80 chrV:14368394-14368474 8.37e-03 3_[+3(8.85e-06)]_69 chrIV:103009-103089 4.15e-01 80 chrIV:9564078-9564158 9.19e-01 80 chrII:3036467-3036547 9.03e-02 1_[+4(1.48e-05)]_11_[+4(1.48e-05)]_\ 11_[+4(1.48e-05)]_33 chrV:13202348-13202428 7.68e-02 80 chrIII:11684955-11685035 1.94e-01 80 chrX:16327399-16327479 7.49e-01 80 chrI:2659760-2659840 2.35e-02 21_[+1(5.74e-05)]_51 chrX:5101024-5101104 7.04e-01 80 chrIV:10217779-10217859 6.89e-01 80 chrIV:13083247-13083327 1.96e-01 80 chrV:1594705-1594785 4.32e-02 17_[+4(6.67e-05)]_55 chrX:8109748-8109828 1.42e-01 80 chrX:5078258-5078338 1.24e-01 80 chrIII:3902719-3902799 7.30e-01 80 chrIII:7297364-7297444 9.75e-02 69_[+1(5.74e-05)]_3 chrV:5838775-5838855 7.47e-01 80 chrX:9446372-9446452 8.27e-01 80 chrIII:10822699-10822779 1.96e-02 37_[+1(5.74e-05)]_35 chrX:15161168-15161248 1.22e-01 7_[+1(5.74e-05)]_65 chrX:4147770-4147850 7.35e-02 80 chrV:8179068-8179148 9.95e-02 80 chrI:9736376-9736456 2.04e-01 80 chrX:8567316-8567396 8.86e-01 80 chrII:11731365-11731445 5.09e-01 80 chrIV:9196114-9196194 6.45e-01 80 chrIII:3619817-3619897 6.29e-01 80 chrX:17545690-17545770 1.86e-03 24_[+4(8.50e-06)]_48 chrIII:11738618-11738698 1.55e-01 80 chrIII:5083446-5083526 1.07e-01 68_[+4(1.48e-05)]_4 chrX:381135-381215 5.45e-04 30_[+3(4.07e-05)]_42 chrIV:10275462-10275542 9.46e-02 80 chrX:8676179-8676259 5.33e-01 80 chrX:16202331-16202411 5.43e-01 80 chrV:19533646-19533726 3.11e-01 80 chrX:11792877-11792957 3.77e-01 80 chrX:3832289-3832369 6.01e-02 25_[+2(6.39e-05)]_47 chrIII:7644403-7644483 3.68e-01 80 chrIV:9376742-9376822 3.36e-01 2_[+2(6.39e-05)]_70 chrX:8211123-8211203 1.80e-01 80 chrIII:9269237-9269317 7.93e-01 80 chrII:6176660-6176740 2.63e-01 80 chrII:15212614-15212694 1.49e-01 36_[+3(4.95e-05)]_36 chrX:2841971-2842051 6.39e-01 80 chrV:11803654-11803734 8.57e-03 51_[+2(6.39e-05)]_21 chrIV:9868072-9868152 7.55e-01 80 chrIV:1720959-1721039 6.26e-02 80 chrX:8819984-8820064 6.09e-01 80 chrII:14142245-14142325 2.26e-01 80 chrIII:8986988-8987068 2.79e-01 80 chrV:1607989-1608069 6.66e-03 80 chrIV:2130845-2130925 1.25e-01 22_[+1(5.74e-05)]_50 chrIII:62543-62623 6.44e-01 80 chrX:3838991-3839071 1.66e-02 15_[+1(5.74e-05)]_57 chrX:16554141-16554221 6.52e-01 80 chrIII:8974775-8974855 7.93e-03 18_[+4(1.48e-05)]_54 chrIV:10976085-10976165 1.96e-01 80 chrV:203961-204041 4.07e-03 9_[+1(9.68e-05)]_14_[+3(8.85e-06)]_\ 41 chrIV:13393424-13393504 5.01e-01 80 chrV:11676621-11676701 1.43e-01 80 chrIV:11491526-11491606 3.19e-02 80 chrII:8743585-8743665 8.97e-01 80 chrIII:9753011-9753091 5.52e-01 80 chrX:6204912-6204992 2.36e-02 80 chrV:6240038-6240118 4.90e-01 80 chrV:1438976-1439056 2.40e-01 80 chrI:12045649-12045729 6.47e-01 80 chrIII:7369657-7369737 1.61e-01 9_[+1(5.74e-05)]_63 chrX:9536237-9536317 3.67e-01 80 chrII:7272685-7272765 7.47e-01 80 chrX:4215641-4215721 5.11e-02 42_[+3(8.85e-06)]_30 chrX:16192710-16192790 9.46e-01 80 chrX:13772858-13772938 4.72e-01 80 chrI:9871031-9871111 9.33e-01 80 chrX:15842687-15842767 9.42e-01 80 chrV:11859328-11859408 1.80e-01 80 chrI:3297127-3297207 8.68e-01 80 chrX:14793100-14793180 2.27e-01 80 chrIII:13556196-13556276 5.97e-02 80 chrIII:13071735-13071815 3.55e-04 17_[+3(8.85e-06)]_[+3(2.78e-05)]_47 chrX:12668233-12668313 2.24e-01 80 chrI:4489555-4489635 1.37e-01 50_[+2(6.39e-05)]_22 chrI:42232-42312 5.50e-01 80 chrX:13744953-13745033 5.18e-02 40_[+1(5.74e-05)]_32 chrIII:3695557-3695637 3.10e-01 80 chrIV:12835542-12835622 8.62e-01 80 chrV:4192762-4192842 1.62e-01 3_[+2(6.39e-05)]_12_[+2(6.39e-05)]_\ 49 chrX:15709770-15709850 8.21e-03 41_[+3(2.78e-05)]_31 chrV:5763987-5764067 2.98e-02 80 chrIII:11050854-11050934 1.33e-01 80 chrX:2240443-2240523 5.15e-01 80 chrX:15700381-15700461 1.82e-01 80 chrX:10391321-10391401 3.66e-01 80 chrX:13541472-13541552 8.67e-01 80 chrIV:6099951-6100031 3.53e-02 80 chrX:13920508-13920588 1.26e-01 35_[+3(4.95e-05)]_37 chrII:13679987-13680067 4.79e-02 39_[+2(6.39e-05)]_33 chrIV:9672530-9672610 2.31e-01 17_[+1(9.68e-05)]_55 chrV:16357467-16357547 1.70e-02 56_[+4(4.19e-05)]_16 chrIV:5778471-5778551 7.73e-01 80 chrII:13954244-13954324 2.32e-01 80 chrIV:14445378-14445458 4.02e-01 80 chrV:12599567-12599647 2.77e-01 80 chrIV:274342-274422 6.93e-02 80 chrX:15345912-15345992 1.99e-02 1_[+1(5.74e-05)]_71 chrIV:2896157-2896237 9.90e-01 80 chrV:19519745-19519825 6.85e-02 80 chrV:11196749-11196829 9.96e-01 80 chrX:9643244-9643324 1.55e-01 80 chrV:19612131-19612211 7.33e-02 15_[+1(5.74e-05)]_[+1(5.74e-05)]_49 chrIV:12601108-12601188 4.54e-01 80 chrIII:11496635-11496715 1.44e-03 80 chrX:5467443-5467523 3.71e-01 80 chrV:7413460-7413540 3.02e-01 80 chrI:1296634-1296714 4.36e-01 80 chrX:6808793-6808873 1.00e-01 25_[+1(9.68e-05)]_47 chrV:11857945-11858025 3.32e-01 80 chrIII:8782916-8782996 4.18e-02 37_[+2(6.39e-05)]_35 chrI:4382436-4382516 2.35e-03 1_[+5(4.19e-06)]_71 chrX:8080561-8080641 3.60e-01 36_[+2(6.39e-05)]_5_[+2(6.39e-05)]_\ 23 chrX:11481916-11481996 5.71e-02 80 chrV:11531178-11531258 5.20e-01 80 chrIV:12427835-12427915 1.03e-01 43_[+3(1.49e-05)]_29 chrIII:4922185-4922265 5.26e-02 7_[+1(9.68e-05)]_65 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************