******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/lin-39.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:1313751-1313831 1.0000 80 chrIV:10341828-10341908 1.0000 80 chrI:14071930-14072010 1.0000 80 chrIV:12425715-12425795 1.0000 80 chrI:4915725-4915805 1.0000 80 chrII:10829744-10829824 1.0000 80 chrIII:4108280-4108360 1.0000 80 chrX:3470482-3470562 1.0000 80 chrII:10969610-10969690 1.0000 80 chrX:8390656-8390736 1.0000 80 chrX:4154959-4155039 1.0000 80 chrIV:13694749-13694829 1.0000 80 chrI:1626575-1626655 1.0000 80 chrX:16402462-16402542 1.0000 80 chrV:5888972-5889052 1.0000 80 chrIV:9194165-9194245 1.0000 80 chrIV:13000124-13000204 1.0000 80 chrII:1360448-1360528 1.0000 80 chrI:6275738-6275818 1.0000 80 chrV:5959254-5959334 1.0000 80 chrII:1338352-1338432 1.0000 80 chrX:15027708-15027788 1.0000 80 chrI:961360-961440 1.0000 80 chrI:14920307-14920387 1.0000 80 chrV:13103883-13103963 1.0000 80 chrX:16999734-16999814 1.0000 80 chrV:6757026-6757106 1.0000 80 chrV:3409692-3409772 1.0000 80 chrI:1583426-1583506 1.0000 80 chrIII:8818481-8818561 1.0000 80 chrIV:5111325-5111405 1.0000 80 chrI:9200830-9200910 1.0000 80 chrIV:10065341-10065421 1.0000 80 chrX:3354720-3354800 1.0000 80 chrIII:8933857-8933937 1.0000 80 chrI:435520-435600 1.0000 80 chrII:7893654-7893734 1.0000 80 chrII:4575716-4575796 1.0000 80 chrX:4802515-4802595 1.0000 80 chrIII:9224908-9224988 1.0000 80 chrIV:7725043-7725123 1.0000 80 chrX:11463154-11463234 1.0000 80 chrX:9798677-9798757 1.0000 80 chrX:5028479-5028559 1.0000 80 chrII:8451574-8451654 1.0000 80 chrI:954424-954504 1.0000 80 chrI:2833332-2833412 1.0000 80 chrX:8808893-8808973 1.0000 80 chrIV:3069902-3069982 1.0000 80 chrV:9396236-9396316 1.0000 80 chrI:2678237-2678317 1.0000 80 chrIII:5989430-5989510 1.0000 80 chrX:16997450-16997530 1.0000 80 chrX:9552050-9552130 1.0000 80 chrII:7640619-7640699 1.0000 80 chrII:9299809-9299889 1.0000 80 chrV:1228304-1228384 1.0000 80 chrX:6574488-6574568 1.0000 80 chrIII:2553715-2553795 1.0000 80 chrIII:10126543-10126623 1.0000 80 chrX:4933148-4933228 1.0000 80 chrI:4423064-4423144 1.0000 80 chrII:8961616-8961696 1.0000 80 chrX:12917916-12917996 1.0000 80 chrV:8494481-8494561 1.0000 80 chrX:17520963-17521043 1.0000 80 chrI:10011703-10011783 1.0000 80 chrIV:1279081-1279161 1.0000 80 chrIV:13689626-13689706 1.0000 80 chrI:10499695-10499775 1.0000 80 chrX:8003835-8003915 1.0000 80 chrIV:8069322-8069402 1.0000 80 chrIII:3437356-3437436 1.0000 80 chrI:35410-35490 1.0000 80 chrIV:17267657-17267737 1.0000 80 chrV:13778033-13778113 1.0000 80 chrII:6916033-6916113 1.0000 80 chrV:10722002-10722082 1.0000 80 chrIII:5991301-5991381 1.0000 80 chrIII:10634726-10634806 1.0000 80 chrI:2154006-2154086 1.0000 80 chrX:3455713-3455793 1.0000 80 chrV:13402591-13402671 1.0000 80 chrII:14270651-14270731 1.0000 80 chrIV:6833756-6833836 1.0000 80 chrIV:8070438-8070518 1.0000 80 chrIII:9346245-9346325 1.0000 80 chrIII:3222537-3222617 1.0000 80 chrI:14193628-14193708 1.0000 80 chrV:8166093-8166173 1.0000 80 chrX:1109034-1109114 1.0000 80 chrII:1344755-1344835 1.0000 80 chrII:9576887-9576967 1.0000 80 chrX:10022124-10022204 1.0000 80 chrII:7213886-7213966 1.0000 80 chrIV:11348953-11349033 1.0000 80 chrII:5871659-5871739 1.0000 80 chrI:14179842-14179922 1.0000 80 chrX:15994045-15994125 1.0000 80 chrX:10430885-10430965 1.0000 80 chrX:3179593-3179673 1.0000 80 chrX:1160706-1160786 1.0000 80 chrI:9962850-9962930 1.0000 80 chrIII:4460386-4460466 1.0000 80 chrX:2338935-2339015 1.0000 80 chrIV:6836898-6836978 1.0000 80 chrX:7954478-7954558 1.0000 80 chrV:15071136-15071216 1.0000 80 chrII:8956128-8956208 1.0000 80 chrIII:9084463-9084543 1.0000 80 chrII:7895383-7895463 1.0000 80 chrII:7838803-7838883 1.0000 80 chrI:1582038-1582118 1.0000 80 chrV:1890212-1890292 1.0000 80 chrX:12902413-12902493 1.0000 80 chrX:1242116-1242196 1.0000 80 chrI:8935143-8935223 1.0000 80 chrIV:1906931-1907011 1.0000 80 chrI:2280373-2280453 1.0000 80 chrIV:10420158-10420238 1.0000 80 chrIV:4581029-4581109 1.0000 80 chrI:2679585-2679665 1.0000 80 chrIII:5371691-5371771 1.0000 80 chrI:1870867-1870947 1.0000 80 chrI:7830399-7830479 1.0000 80 chrI:5690268-5690348 1.0000 80 chrII:13066915-13066995 1.0000 80 chrIII:6135365-6135445 1.0000 80 chrV:1149871-1149951 1.0000 80 chrV:13658093-13658173 1.0000 80 chrX:7643203-7643283 1.0000 80 chrII:9109353-9109433 1.0000 80 chrII:6707645-6707725 1.0000 80 chrI:10765822-10765902 1.0000 80 chrX:7681409-7681489 1.0000 80 chrX:10591574-10591654 1.0000 80 chrV:4495214-4495294 1.0000 80 chrII:5218514-5218594 1.0000 80 chrV:4497286-4497366 1.0000 80 chrV:6033650-6033730 1.0000 80 chrX:4623077-4623157 1.0000 80 chrIV:7585663-7585743 1.0000 80 chrV:12536469-12536549 1.0000 80 chrX:5026628-5026708 1.0000 80 chrX:12256773-12256853 1.0000 80 chrIV:13699633-13699713 1.0000 80 chrX:13801781-13801861 1.0000 80 chrIII:360437-360517 1.0000 80 chrII:10986568-10986648 1.0000 80 chrIV:7897522-7897602 1.0000 80 chrV:12021450-12021530 1.0000 80 chrV:12111164-12111244 1.0000 80 chrI:1598578-1598658 1.0000 80 chrIII:4951400-4951480 1.0000 80 chrX:14495190-14495270 1.0000 80 chrI:2663719-2663799 1.0000 80 chrI:9964703-9964783 1.0000 80 chrX:12381983-12382063 1.0000 80 chrX:12404911-12404991 1.0000 80 chrV:12326806-12326886 1.0000 80 chrX:14744709-14744789 1.0000 80 chrI:1540581-1540661 1.0000 80 chrI:1720704-1720784 1.0000 80 chrIV:11453102-11453182 1.0000 80 chrII:9307127-9307207 1.0000 80 chrIII:6248215-6248295 1.0000 80 chrX:7175513-7175593 1.0000 80 chrX:3024825-3024905 1.0000 80 chrX:3126434-3126514 1.0000 80 chrI:9969531-9969611 1.0000 80 chrX:11369016-11369096 1.0000 80 chrX:9702967-9703047 1.0000 80 chrI:1488538-1488618 1.0000 80 chrV:12523511-12523591 1.0000 80 chrI:1701886-1701966 1.0000 80 chrIV:2217376-2217456 1.0000 80 chrI:1392968-1393048 1.0000 80 chrX:3440430-3440510 1.0000 80 chrI:3313251-3313331 1.0000 80 chrI:2306874-2306954 1.0000 80 chrII:8797409-8797489 1.0000 80 chrX:13383458-13383538 1.0000 80 chrX:11463734-11463814 1.0000 80 chrI:529586-529666 1.0000 80 chrII:10770932-10771012 1.0000 80 chrIV:13695852-13695932 1.0000 80 chrII:12662059-12662139 1.0000 80 chrI:3298428-3298508 1.0000 80 chrIII:4037519-4037599 1.0000 80 chrIII:11039386-11039466 1.0000 80 chrX:10576999-10577079 1.0000 80 chrX:2589340-2589420 1.0000 80 chrI:7708481-7708561 1.0000 80 chrIV:5960156-5960236 1.0000 80 chrIV:11354150-11354230 1.0000 80 chrIII:5708180-5708260 1.0000 80 chrV:6350305-6350385 1.0000 80 chrV:8652284-8652364 1.0000 80 chrV:5583053-5583133 1.0000 80 chrI:7129564-7129644 1.0000 80 chrIV:1827487-1827567 1.0000 80 chrI:8120319-8120399 1.0000 80 chrV:1364474-1364554 1.0000 80 chrV:7891379-7891459 1.0000 80 chrIII:9731454-9731534 1.0000 80 chrIII:8788867-8788947 1.0000 80 chrI:6638888-6638968 1.0000 80 chrV:13111751-13111831 1.0000 80 chrIII:8451346-8451426 1.0000 80 chrII:6834763-6834843 1.0000 80 chrX:7678621-7678701 1.0000 80 chrII:13500740-13500820 1.0000 80 chrX:12406229-12406309 1.0000 80 chrIII:4019059-4019139 1.0000 80 chrI:5087898-5087978 1.0000 80 chrIV:7611542-7611622 1.0000 80 chrX:11464589-11464669 1.0000 80 chrV:11023339-11023419 1.0000 80 chrV:1229444-1229524 1.0000 80 chrI:13025673-13025753 1.0000 80 chrX:3802945-3803025 1.0000 80 chrV:11507514-11507594 1.0000 80 chrV:16821391-16821471 1.0000 80 chrI:13042278-13042358 1.0000 80 chrI:1069223-1069303 1.0000 80 chrIV:10817706-10817786 1.0000 80 chrI:7124593-7124673 1.0000 80 chrII:6823383-6823463 1.0000 80 chrX:8727441-8727521 1.0000 80 chrI:13505918-13505998 1.0000 80 chrI:12677815-12677895 1.0000 80 chrII:8409561-8409641 1.0000 80 chrX:13196343-13196423 1.0000 80 chrX:12527357-12527437 1.0000 80 chrV:1231725-1231805 1.0000 80 chrIV:4667544-4667624 1.0000 80 chrX:6128453-6128533 1.0000 80 chrX:6146093-6146173 1.0000 80 chrX:9600291-9600371 1.0000 80 chrIV:5100295-5100375 1.0000 80 chrX:13493936-13494016 1.0000 80 chrIII:9851642-9851722 1.0000 80 chrX:2498751-2498831 1.0000 80 chrII:13903636-13903716 1.0000 80 chrIII:8146186-8146266 1.0000 80 chrIII:4497901-4497981 1.0000 80 chrIII:6364606-6364686 1.0000 80 chrI:12675361-12675441 1.0000 80 chrII:11496919-11496999 1.0000 80 chrIV:1816697-1816777 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_lin-39/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/lin-39.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.261 C 0.24 G 0.235 T 0.264 Background letter frequencies (from file dataset with add-one prior applied): A 0.261 C 0.24 G 0.235 T 0.264 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GATKGATG MEME-1 width = 8 sites = 43 llr = 368 E-value = 1.2e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif GATKGATG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1a::1a:1 pos.-specific C :::::::: probability G 9::39::7 matrix T ::a7::a1 bits 2.1 1.9 * * 1.7 ** ** 1.5 *** *** Relative 1.3 *** *** Entropy 1.0 ******* (12.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GATTGATG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATKGATG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6364606-6364686 37 1.63e-05 ATAGGGAAAA GATTGATG ATCATTGGGT chrI:7124593-7124673 23 1.63e-05 GCGGGTAAGT GATTGATG ATGAGGGTCA chrIII:9731454-9731534 19 1.63e-05 AGGGGGTGGT GATTGATG GGCGGCGGAA chrX:9702967-9703047 59 1.63e-05 CCTTTCTCAA GATTGATG TTGTTGTCAT chrII:9307127-9307207 64 1.63e-05 TAATGATGAA GATTGATG GAGTTGCAA chrX:2338935-2339015 25 1.63e-05 AGAGCTCGCT GATTGATG GATGGTCCCA chrI:14179842-14179922 64 1.63e-05 AGATGACAAC GATTGATG AGTGAACAT chrII:1344755-1344835 3 1.63e-05 AT GATTGATG CCTTAAGATG chrIII:5991301-5991381 38 1.63e-05 TTGTGACGTA GATTGATG AAGGTCCTCA chrI:10499695-10499775 15 1.63e-05 AATAAATTGT GATTGATG GCAGCTAATT chrV:1228304-1228384 49 1.63e-05 TCGGGACAGT GATTGATG TCATTTCTTG chrI:2678237-2678317 4 1.63e-05 AGT GATTGATG GATGAAGTGA chrX:8808893-8808973 17 1.63e-05 CGGTGTTTGA GATTGATG GATACCATTC chrV:5888972-5889052 1 1.63e-05 . GATTGATG ATACCCGCTT chrX:8727441-8727521 24 3.07e-05 TCCAGTAGTT GATGGATG TGCAAAGAAA chrV:6350305-6350385 72 3.07e-05 CCGCTGTTGT GATGGATG G chrIII:5708180-5708260 39 3.07e-05 CGAAACTGGT GATGGATG TACACAGACG chrX:11463154-11463234 64 3.07e-05 GTCATAAAAT GATGGATG TTTGAAACG chrIV:1816697-1816777 61 6.71e-05 GGGACACAAT GATTGATA GCTGACTTAC chrV:11507514-11507594 3 6.71e-05 TT GATTGATA GGCCGGATGA chrIV:13695852-13695932 16 6.71e-05 TGTGTCGATT GATTGATT GTCGTCCTAA chrX:10591574-10591654 53 6.71e-05 TGTACACATT GATTGATA GACTGGTCGC chrX:1109034-1109114 64 6.71e-05 GATAGACAGT GATTGATT ACTTGATGC chrII:10829744-10829824 52 6.71e-05 AGACGGGGAT GATTGATA ATAGGGAGAG chrII:10770932-10771012 65 1.03e-04 CCCGTCGACA AATTGATG ATGTGTTG chrIII:5371691-5371771 58 1.03e-04 GATCCTACAT GATTAATG ACTTTGCATA chrIV:17267657-17267737 55 1.03e-04 CTTCTCATAT GATTAATG GTCCGTGCAG chrIII:3437356-3437436 53 1.03e-04 CGTCATCGAC AATTGATG GACATGGATT chrV:5959254-5959334 33 1.03e-04 GAGCCTTGAA AATTGATG AGTTTTGTGG chrI:7708481-7708561 12 1.36e-04 GGAACGAAAA GATGGATT ACAATCACAT chrI:529586-529666 68 1.36e-04 CATGATATAC GATGGATT GCGTG chrX:11463734-11463814 17 1.36e-04 GACAGACGGT GATGGATA CCGATTGCAC chrII:7895383-7895463 53 1.36e-04 ATGCATTTTT GATGGATA GCCCATGGGA chrV:8494481-8494561 35 1.36e-04 GTGTCCTCCA GATGGATT ACGAAATGAC chrIV:5111325-5111405 37 1.36e-04 TCGTTCACTT GATGGATT GGCTCATTCG chrIII:8146186-8146266 66 1.68e-04 CAGAGACGAA AATGGATG GACGAGA chrIII:8451346-8451426 57 1.68e-04 CGAGACTAAT GATGAATG CATTTTGTAC chrIV:13689626-13689706 19 1.68e-04 AGCAAAAACT GATGAATG ATATTGTGTG chrV:9396236-9396316 53 1.68e-04 GTTTTCGAAT GATGAATG AGAGAGTCTC chrII:7893654-7893734 33 1.68e-04 GAGGAAAAAT AATGGATG TAGTACCCGG chrV:1890212-1890292 32 1.83e-04 GGAGACAGCT GACTGATG GCAGAGAATA chrV:13402591-13402671 17 1.83e-04 GACGTATGGT GACTGATG GCGTCACATG chrIII:9346245-9346325 28 2.12e-04 TTCAACTTTT GATTGAAG ACAGAGCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATKGATG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6364606-6364686 1.6e-05 36_[+1]_36 chrI:7124593-7124673 1.6e-05 22_[+1]_50 chrIII:9731454-9731534 1.6e-05 18_[+1]_54 chrX:9702967-9703047 1.6e-05 58_[+1]_14 chrII:9307127-9307207 1.6e-05 63_[+1]_9 chrX:2338935-2339015 1.6e-05 24_[+1]_48 chrI:14179842-14179922 1.6e-05 63_[+1]_9 chrII:1344755-1344835 1.6e-05 2_[+1]_70 chrIII:5991301-5991381 1.6e-05 37_[+1]_35 chrI:10499695-10499775 1.6e-05 14_[+1]_58 chrV:1228304-1228384 1.6e-05 48_[+1]_24 chrI:2678237-2678317 1.6e-05 3_[+1]_69 chrX:8808893-8808973 1.6e-05 16_[+1]_56 chrV:5888972-5889052 1.6e-05 [+1]_72 chrX:8727441-8727521 3.1e-05 23_[+1]_49 chrV:6350305-6350385 3.1e-05 71_[+1]_1 chrIII:5708180-5708260 3.1e-05 38_[+1]_34 chrX:11463154-11463234 3.1e-05 63_[+1]_9 chrIV:1816697-1816777 6.7e-05 60_[+1]_12 chrV:11507514-11507594 6.7e-05 2_[+1]_70 chrIV:13695852-13695932 6.7e-05 15_[+1]_57 chrX:10591574-10591654 6.7e-05 52_[+1]_20 chrX:1109034-1109114 6.7e-05 63_[+1]_9 chrII:10829744-10829824 6.7e-05 51_[+1]_21 chrII:10770932-10771012 0.0001 64_[+1]_8 chrIII:5371691-5371771 0.0001 57_[+1]_15 chrIV:17267657-17267737 0.0001 54_[+1]_18 chrIII:3437356-3437436 0.0001 52_[+1]_20 chrV:5959254-5959334 0.0001 32_[+1]_40 chrI:7708481-7708561 0.00014 11_[+1]_61 chrI:529586-529666 0.00014 67_[+1]_5 chrX:11463734-11463814 0.00014 16_[+1]_56 chrII:7895383-7895463 0.00014 52_[+1]_20 chrV:8494481-8494561 0.00014 34_[+1]_38 chrIV:5111325-5111405 0.00014 36_[+1]_36 chrIII:8146186-8146266 0.00017 65_[+1]_7 chrIII:8451346-8451426 0.00017 56_[+1]_16 chrIV:13689626-13689706 0.00017 18_[+1]_54 chrV:9396236-9396316 0.00017 52_[+1]_20 chrII:7893654-7893734 0.00017 32_[+1]_40 chrV:1890212-1890292 0.00018 31_[+1]_41 chrV:13402591-13402671 0.00018 16_[+1]_56 chrIII:9346245-9346325 0.00021 27_[+1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATKGATG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GATKGATG width=8 seqs=43 chrIII:6364606-6364686 ( 37) GATTGATG 1 chrI:7124593-7124673 ( 23) GATTGATG 1 chrIII:9731454-9731534 ( 19) GATTGATG 1 chrX:9702967-9703047 ( 59) GATTGATG 1 chrII:9307127-9307207 ( 64) GATTGATG 1 chrX:2338935-2339015 ( 25) GATTGATG 1 chrI:14179842-14179922 ( 64) GATTGATG 1 chrII:1344755-1344835 ( 3) GATTGATG 1 chrIII:5991301-5991381 ( 38) GATTGATG 1 chrI:10499695-10499775 ( 15) GATTGATG 1 chrV:1228304-1228384 ( 49) GATTGATG 1 chrI:2678237-2678317 ( 4) GATTGATG 1 chrX:8808893-8808973 ( 17) GATTGATG 1 chrV:5888972-5889052 ( 1) GATTGATG 1 chrX:8727441-8727521 ( 24) GATGGATG 1 chrV:6350305-6350385 ( 72) GATGGATG 1 chrIII:5708180-5708260 ( 39) GATGGATG 1 chrX:11463154-11463234 ( 64) GATGGATG 1 chrIV:1816697-1816777 ( 61) GATTGATA 1 chrV:11507514-11507594 ( 3) GATTGATA 1 chrIV:13695852-13695932 ( 16) GATTGATT 1 chrX:10591574-10591654 ( 53) GATTGATA 1 chrX:1109034-1109114 ( 64) GATTGATT 1 chrII:10829744-10829824 ( 52) GATTGATA 1 chrII:10770932-10771012 ( 65) AATTGATG 1 chrIII:5371691-5371771 ( 58) GATTAATG 1 chrIV:17267657-17267737 ( 55) GATTAATG 1 chrIII:3437356-3437436 ( 53) AATTGATG 1 chrV:5959254-5959334 ( 33) AATTGATG 1 chrI:7708481-7708561 ( 12) GATGGATT 1 chrI:529586-529666 ( 68) GATGGATT 1 chrX:11463734-11463814 ( 17) GATGGATA 1 chrII:7895383-7895463 ( 53) GATGGATA 1 chrV:8494481-8494561 ( 35) GATGGATT 1 chrIV:5111325-5111405 ( 37) GATGGATT 1 chrIII:8146186-8146266 ( 66) AATGGATG 1 chrIII:8451346-8451426 ( 57) GATGAATG 1 chrIV:13689626-13689706 ( 19) GATGAATG 1 chrV:9396236-9396316 ( 53) GATGAATG 1 chrII:7893654-7893734 ( 33) AATGGATG 1 chrV:1890212-1890292 ( 32) GACTGATG 1 chrV:13402591-13402671 ( 17) GACTGATG 1 chrIII:9346245-9346325 ( 28) GATTGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATKGATG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.73438 E= 1.2e-014 -117 -1207 191 -1207 194 -1207 -1207 -1207 -1207 -236 -1207 185 -1207 -1207 57 130 -117 -1207 191 -1207 194 -1207 -1207 -1207 -348 -1207 -1207 189 -90 -1207 161 -92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATKGATG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 1.2e-014 0.116279 0.000000 0.883721 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.046512 0.000000 0.953488 0.000000 0.000000 0.348837 0.651163 0.116279 0.000000 0.883721 0.000000 1.000000 0.000000 0.000000 0.000000 0.023256 0.000000 0.000000 0.976744 0.139535 0.000000 0.720930 0.139535 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATKGATG MEME-1 regular expression -------------------------------------------------------------------------------- GAT[TG]GATG -------------------------------------------------------------------------------- Time 5.29 secs. ******************************************************************************** ******************************************************************************** MOTIF CATYHATC MEME-2 width = 8 sites = 81 llr = 582 E-value = 4.1e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif CATYHATC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3a:136:: pos.-specific C 7::421:a probability G :::::1:: matrix T ::a542a: bits 2.1 * 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 *** ** Entropy 1.0 *** ** (10.4 bits) 0.8 *** ** 0.6 **** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CATTTATC consensus A CA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATYHATC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:1364474-1364554 23 3.64e-05 GTCAAGGGAG CATCTATC TATTCAAACC chrV:8652284-8652364 46 3.64e-05 ATCGGTGCCT CATTTATC AAAGCGGCTG chrV:13658093-13658173 48 3.64e-05 CCGACAACGC CATTTATC ACGGACAGCG chrIII:9084463-9084543 28 3.64e-05 GGGACCCCAT CATTTATC AAGGAGCCGA chrX:7954478-7954558 60 3.64e-05 GTCTCAAACC CATTTATC ACCCCATTGA chrII:7213886-7213966 57 3.64e-05 AAATCATCAC CATCTATC ATCAGTCGCC chrII:7893654-7893734 55 3.64e-05 ACCCGGAGCA CATTTATC ATTGTGCCTA chrII:1360448-1360528 9 3.64e-05 TTGGAGGT CATCTATC AAGATTTTGG chrX:3470482-3470562 58 3.64e-05 GACATACGTT CATTTATC AAATGGCTAA chrI:4915725-4915805 45 3.64e-05 AGAGCCCTGT CATTTATC AAACTGGATA chrII:11496919-11496999 8 7.24e-05 AAATAAC CATCAATC ACAAGAAAAA chrV:1231725-1231805 1 7.24e-05 . CATCAATC TTGTGTGTGA chrII:8409561-8409641 16 7.24e-05 TGTTCCAACT CATCAATC ACACCGAGGA chrII:10986568-10986648 46 7.24e-05 ACACACCGCC CATCAATC TTCTGGAGCC chrV:4495214-4495294 10 7.24e-05 TATAGACCC CATCAATC ATTTGTATGA chrV:15071136-15071216 44 7.24e-05 CATTCTTGCA CATCAATC ACTCCGATTC chrI:14193628-14193708 10 7.24e-05 CAACCCATC CATCAATC CAACCCCATT chrI:2154006-2154086 51 7.24e-05 TTAATTCTGT CATCAATC TTTTTACGTG chrII:6916033-6916113 47 7.24e-05 CCACCCCCAT CATCAATC TCTTCGTGCA chrV:13778033-13778113 36 7.24e-05 AAATCCCATC CATCAATC ACCGAGGAAT chrX:9552050-9552130 13 7.24e-05 CTCAAAAACT CATCAATC TATTGCGTTG chrI:435520-435600 22 7.24e-05 AACAAGGGCT CATCAATC ACTGACGAGG chrI:14920307-14920387 59 7.24e-05 CTTCTCAAAC CATCAATC CATCACGTTG chrX:13196343-13196423 29 1.05e-04 CCTCCCCACC CATCCATC CACCGGACTC chrV:5583053-5583133 57 1.05e-04 ACGGCGCAGA CATCCATC ATTAATGGAC chrIV:5960156-5960236 59 1.05e-04 CAGAAGCTTC CATCCATC CCCACGTTTG chrX:12902413-12902493 18 1.05e-04 AGCATCTGCG CATTCATC TTCTTGTGTC chrIV:3069902-3069982 34 1.05e-04 ATTTGAAACA CATTCATC AATTGGCGGC chrX:8808893-8808973 30 1.05e-04 TGATGGATAC CATTCATC ATTTGCGTGC chrX:15027708-15027788 53 1.05e-04 TTATCTTAGT CATTCATC AAACTCGACG chrX:3455713-3455793 58 1.45e-04 GGGATCCAGC AATTTATC ATTGTTGGGA chrI:10011703-10011783 70 1.45e-04 CTCTAGATGT AATTTATC ATA chrV:3409692-3409772 58 1.45e-04 TTTTTCTGCC AATTTATC ATGTAGCAAG chrII:6823383-6823463 45 2.54e-04 TGCCAATCGT CATTTGTC AAGTGTCAAC chrI:8120319-8120399 1 2.54e-04 . CATTTGTC ATGTTTCTTC chrIV:13695852-13695932 41 2.54e-04 TAACATGAGT AATCAATC TTCGTTGCAA chrI:1720704-1720784 7 2.54e-04 TACGAT CATCTttc ttcttcttct chrX:12381983-12382063 2 2.54e-04 t catttgtc aGATGGAATT chrII:5218514-5218594 61 2.54e-04 TAAGCCTAGT CATTTGTC ACTTTATGTG chrI:2679585-2679665 66 2.54e-04 TGACACGTCT CATTTTTC AATGTCA chrIII:2553715-2553795 61 2.54e-04 ACCATTTCTC AATTAATC ATCAGTGCTC chrV:13103883-13103963 47 2.54e-04 AGGGGAAAAC CATTTGTC AAGATGCCCA chrIV:13000124-13000204 12 2.54e-04 ATTACTTGCT CATTTGTC ACTCACTCAC chrIII:4108280-4108360 62 2.54e-04 CAGCACAAGT CATTTGTC AATCCTATGA chrX:4933148-4933228 26 3.41e-04 CATCTAGCGC CATTATTC CGTTGGCTCT chrIII:5989430-5989510 51 3.41e-04 TATGTATGCC CATCAGTC GCCTTCTTGT chrX:16402462-16402542 71 3.41e-04 TGCTTCCCCT CATCAGTC AT chrX:7678621-7678701 22 3.77e-04 TCTACACTCT AATCCATC AGTTGTTTCT chrV:4497286-4497366 34 3.77e-04 TTTTTTTTCG AATCCATC CCTTTTTTTT chrV:1149871-1149951 28 3.77e-04 TTTCGATAAT AATCCATC ATCTGACGTC chrII:1344755-1344835 23 3.77e-04 TTAAGATGCC AATTCATC ATTTTTTTCG chrV:10722002-10722082 31 3.77e-04 ACGCACGAAA AATCCATC AAAAGCAGCG chrV:6757026-6757106 46 3.77e-04 CCTCGGGATC AATTCATC ATTAGTGCTC chrI:5087898-5087978 21 4.29e-04 TGTTCTGTCC CATAAATC TCAAAAGTGT chrX:13801781-13801861 64 4.29e-04 ATTCTTGATT CATCTCTC TGACCATCG chrIII:4460386-4460466 20 4.29e-04 GGAAACAATT CATTTCTC GGGGCTCTGT chrIV:6833756-6833836 17 4.29e-04 CGGGAGAAGC CATAAATC TTGGGGCACC chrII:9299809-9299889 24 4.29e-04 GGAGGAGCCT CATAAATC AAGTGAATCT chrIV:13694749-13694829 48 4.29e-04 GTTCCGCACT CATAAATC ATAGCCCTAC chrI:13025673-13025753 37 4.93e-04 TGACCCAACT CATTCTTC TTCCTGGTCT chrX:9702967-9703047 37 4.93e-04 TCCCGCCACC CATCCGTC GTCTCCTTTC chrI:2663719-2663799 8 4.93e-04 CTTGTTC CATTCTTC GTACCCCTTC chrII:10969610-10969690 6 4.93e-04 TTTCT CATTCTTC GTCACCCGAT chrX:6146093-6146173 3 5.26e-04 CT CATTACTC GCGTTGATCT chrIV:11354150-11354230 46 5.26e-04 GCTCCGCCTC CATCACTC GTTTTTCCTC chrV:12326806-12326886 51 5.26e-04 GAGTTCGACG CATCACTC ACTCGGCACT chrI:1583426-1583506 3 5.73e-04 CA CATTCCTC TTATTGCTCA chrX:2498751-2498831 37 6.49e-04 TTTGCTGCCA AATCTGTC GGGTGCTTTT chrX:1242116-1242196 50 6.49e-04 GACTGACACC AATTTTTC TTCCTCTCTC chrIV:6836898-6836978 19 6.49e-04 CAACGGAACC AATTTTTC ATTTCACTCT chrIV:11348953-11349033 26 6.49e-04 CAATCAGCTC AATTTGTC TCTCATGTCT chrII:9576887-9576967 56 6.49e-04 CCCAAATGCC AATTTTTC AAAATCCGAG chrI:6275738-6275818 70 6.49e-04 GGAACGACCA AATTTTTC ACA chrV:8494481-8494561 8 7.44e-04 GCGCATC AATTATTC GTTCGGAATG chrI:13505918-13505998 1 8.37e-04 . CATATTTC TTTTTACAGG chrX:7681409-7681489 56 8.37e-04 TTTCGCTTTC CATATTTC GAATGATGGA chrX:4802515-4802595 2 8.37e-04 A CATATTTC AACAAAATGG chrI:9200830-9200910 62 8.37e-04 GTGGAAAACT AATAAATC AGAGCAAGGA chrI:961360-961440 51 8.37e-04 GCGCGAAACG AATAAATC AAGAAACGTC chrI:1313751-1313831 50 8.37e-04 CACTGGGAGC AATCTCTC GTCTCTCATA chrIV:17267657-17267737 2 1.08e-03 T AATCCCTC ATTTCCGTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATYHATC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:1364474-1364554 3.6e-05 22_[+2]_50 chrV:8652284-8652364 3.6e-05 45_[+2]_27 chrV:13658093-13658173 3.6e-05 47_[+2]_25 chrIII:9084463-9084543 3.6e-05 27_[+2]_45 chrX:7954478-7954558 3.6e-05 59_[+2]_13 chrII:7213886-7213966 3.6e-05 56_[+2]_16 chrII:7893654-7893734 3.6e-05 54_[+2]_18 chrII:1360448-1360528 3.6e-05 8_[+2]_64 chrX:3470482-3470562 3.6e-05 57_[+2]_15 chrI:4915725-4915805 3.6e-05 44_[+2]_28 chrII:11496919-11496999 7.2e-05 7_[+2]_65 chrV:1231725-1231805 7.2e-05 [+2]_72 chrII:8409561-8409641 7.2e-05 15_[+2]_57 chrII:10986568-10986648 7.2e-05 45_[+2]_27 chrV:4495214-4495294 7.2e-05 9_[+2]_63 chrV:15071136-15071216 7.2e-05 43_[+2]_29 chrI:14193628-14193708 7.2e-05 9_[+2]_63 chrI:2154006-2154086 7.2e-05 50_[+2]_22 chrII:6916033-6916113 7.2e-05 46_[+2]_26 chrV:13778033-13778113 7.2e-05 35_[+2]_37 chrX:9552050-9552130 7.2e-05 12_[+2]_60 chrI:435520-435600 7.2e-05 21_[+2]_51 chrI:14920307-14920387 7.2e-05 58_[+2]_14 chrX:13196343-13196423 0.00011 28_[+2]_44 chrV:5583053-5583133 0.00011 56_[+2]_16 chrIV:5960156-5960236 0.00011 58_[+2]_14 chrX:12902413-12902493 0.00011 17_[+2]_55 chrIV:3069902-3069982 0.00011 33_[+2]_39 chrX:8808893-8808973 0.00011 29_[+2]_43 chrX:15027708-15027788 0.00011 52_[+2]_20 chrX:3455713-3455793 0.00015 57_[+2]_15 chrI:10011703-10011783 0.00015 69_[+2]_3 chrV:3409692-3409772 0.00015 57_[+2]_15 chrII:6823383-6823463 0.00025 44_[+2]_28 chrI:8120319-8120399 0.00025 [+2]_72 chrIV:13695852-13695932 0.00025 40_[+2]_32 chrI:1720704-1720784 0.00025 6_[+2]_66 chrX:12381983-12382063 0.00025 1_[+2]_71 chrII:5218514-5218594 0.00025 60_[+2]_12 chrI:2679585-2679665 0.00025 65_[+2]_7 chrIII:2553715-2553795 0.00025 60_[+2]_12 chrV:13103883-13103963 0.00025 46_[+2]_26 chrIV:13000124-13000204 0.00025 11_[+2]_61 chrIII:4108280-4108360 0.00025 61_[+2]_11 chrX:4933148-4933228 0.00034 25_[+2]_47 chrIII:5989430-5989510 0.00034 50_[+2]_22 chrX:16402462-16402542 0.00034 70_[+2]_2 chrX:7678621-7678701 0.00038 21_[+2]_51 chrV:4497286-4497366 0.00038 33_[+2]_39 chrV:1149871-1149951 0.00038 27_[+2]_45 chrII:1344755-1344835 0.00038 22_[+2]_50 chrV:10722002-10722082 0.00038 30_[+2]_42 chrV:6757026-6757106 0.00038 45_[+2]_27 chrI:5087898-5087978 0.00043 20_[+2]_52 chrX:13801781-13801861 0.00043 63_[+2]_9 chrIII:4460386-4460466 0.00043 19_[+2]_53 chrIV:6833756-6833836 0.00043 16_[+2]_56 chrII:9299809-9299889 0.00043 23_[+2]_49 chrIV:13694749-13694829 0.00043 47_[+2]_25 chrI:13025673-13025753 0.00049 36_[+2]_36 chrX:9702967-9703047 0.00049 36_[+2]_36 chrI:2663719-2663799 0.00049 7_[+2]_65 chrII:10969610-10969690 0.00049 5_[+2]_67 chrX:6146093-6146173 0.00053 2_[+2]_70 chrIV:11354150-11354230 0.00053 45_[+2]_27 chrV:12326806-12326886 0.00053 50_[+2]_22 chrI:1583426-1583506 0.00057 2_[+2]_70 chrX:2498751-2498831 0.00065 36_[+2]_36 chrX:1242116-1242196 0.00065 49_[+2]_23 chrIV:6836898-6836978 0.00065 18_[+2]_54 chrIV:11348953-11349033 0.00065 25_[+2]_47 chrII:9576887-9576967 0.00065 55_[+2]_17 chrI:6275738-6275818 0.00065 69_[+2]_3 chrV:8494481-8494561 0.00074 7_[+2]_65 chrI:13505918-13505998 0.00084 [+2]_72 chrX:7681409-7681489 0.00084 55_[+2]_17 chrX:4802515-4802595 0.00084 1_[+2]_71 chrI:9200830-9200910 0.00084 61_[+2]_11 chrI:961360-961440 0.00084 50_[+2]_22 chrI:1313751-1313831 0.00084 49_[+2]_23 chrIV:17267657-17267737 0.0011 1_[+2]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATYHATC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CATYHATC width=8 seqs=81 chrV:1364474-1364554 ( 23) CATCTATC 1 chrV:8652284-8652364 ( 46) CATTTATC 1 chrV:13658093-13658173 ( 48) CATTTATC 1 chrIII:9084463-9084543 ( 28) CATTTATC 1 chrX:7954478-7954558 ( 60) CATTTATC 1 chrII:7213886-7213966 ( 57) CATCTATC 1 chrII:7893654-7893734 ( 55) CATTTATC 1 chrII:1360448-1360528 ( 9) CATCTATC 1 chrX:3470482-3470562 ( 58) CATTTATC 1 chrI:4915725-4915805 ( 45) CATTTATC 1 chrII:11496919-11496999 ( 8) CATCAATC 1 chrV:1231725-1231805 ( 1) CATCAATC 1 chrII:8409561-8409641 ( 16) CATCAATC 1 chrII:10986568-10986648 ( 46) CATCAATC 1 chrV:4495214-4495294 ( 10) CATCAATC 1 chrV:15071136-15071216 ( 44) CATCAATC 1 chrI:14193628-14193708 ( 10) CATCAATC 1 chrI:2154006-2154086 ( 51) CATCAATC 1 chrII:6916033-6916113 ( 47) CATCAATC 1 chrV:13778033-13778113 ( 36) CATCAATC 1 chrX:9552050-9552130 ( 13) CATCAATC 1 chrI:435520-435600 ( 22) CATCAATC 1 chrI:14920307-14920387 ( 59) CATCAATC 1 chrX:13196343-13196423 ( 29) CATCCATC 1 chrV:5583053-5583133 ( 57) CATCCATC 1 chrIV:5960156-5960236 ( 59) CATCCATC 1 chrX:12902413-12902493 ( 18) CATTCATC 1 chrIV:3069902-3069982 ( 34) CATTCATC 1 chrX:8808893-8808973 ( 30) CATTCATC 1 chrX:15027708-15027788 ( 53) CATTCATC 1 chrX:3455713-3455793 ( 58) AATTTATC 1 chrI:10011703-10011783 ( 70) AATTTATC 1 chrV:3409692-3409772 ( 58) AATTTATC 1 chrII:6823383-6823463 ( 45) CATTTGTC 1 chrI:8120319-8120399 ( 1) CATTTGTC 1 chrIV:13695852-13695932 ( 41) AATCAATC 1 chrI:1720704-1720784 ( 7) CATCTTTC 1 chrX:12381983-12382063 ( 2) CATTTGTC 1 chrII:5218514-5218594 ( 61) CATTTGTC 1 chrI:2679585-2679665 ( 66) CATTTTTC 1 chrIII:2553715-2553795 ( 61) AATTAATC 1 chrV:13103883-13103963 ( 47) CATTTGTC 1 chrIV:13000124-13000204 ( 12) CATTTGTC 1 chrIII:4108280-4108360 ( 62) CATTTGTC 1 chrX:4933148-4933228 ( 26) CATTATTC 1 chrIII:5989430-5989510 ( 51) CATCAGTC 1 chrX:16402462-16402542 ( 71) CATCAGTC 1 chrX:7678621-7678701 ( 22) AATCCATC 1 chrV:4497286-4497366 ( 34) AATCCATC 1 chrV:1149871-1149951 ( 28) AATCCATC 1 chrII:1344755-1344835 ( 23) AATTCATC 1 chrV:10722002-10722082 ( 31) AATCCATC 1 chrV:6757026-6757106 ( 46) AATTCATC 1 chrI:5087898-5087978 ( 21) CATAAATC 1 chrX:13801781-13801861 ( 64) CATCTCTC 1 chrIII:4460386-4460466 ( 20) CATTTCTC 1 chrIV:6833756-6833836 ( 17) CATAAATC 1 chrII:9299809-9299889 ( 24) CATAAATC 1 chrIV:13694749-13694829 ( 48) CATAAATC 1 chrI:13025673-13025753 ( 37) CATTCTTC 1 chrX:9702967-9703047 ( 37) CATCCGTC 1 chrI:2663719-2663799 ( 8) CATTCTTC 1 chrII:10969610-10969690 ( 6) CATTCTTC 1 chrX:6146093-6146173 ( 3) CATTACTC 1 chrIV:11354150-11354230 ( 46) CATCACTC 1 chrV:12326806-12326886 ( 51) CATCACTC 1 chrI:1583426-1583506 ( 3) CATTCCTC 1 chrX:2498751-2498831 ( 37) AATCTGTC 1 chrX:1242116-1242196 ( 50) AATTTTTC 1 chrIV:6836898-6836978 ( 19) AATTTTTC 1 chrIV:11348953-11349033 ( 26) AATTTGTC 1 chrII:9576887-9576967 ( 56) AATTTTTC 1 chrI:6275738-6275818 ( 70) AATTTTTC 1 chrV:8494481-8494561 ( 8) AATTATTC 1 chrI:13505918-13505998 ( 1) CATATTTC 1 chrX:7681409-7681489 ( 56) CATATTTC 1 chrX:4802515-4802595 ( 2) CATATTTC 1 chrI:9200830-9200910 ( 62) AATAAATC 1 chrI:961360-961440 ( 51) AATAAATC 1 chrI:1313751-1313831 ( 50) AATCTCTC 1 chrIV:17267657-17267737 ( 2) AATCCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATYHATC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.29533 E= 4.1e-015 6 160 -1298 -1298 194 -1298 -1298 -1298 -1298 -1298 -1298 192 -123 81 -1298 83 41 -3 -1298 67 115 -128 -67 -61 -1298 -1298 -1298 192 -1298 206 -1298 -1298 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATYHATC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 4.1e-015 0.271605 0.728395 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.111111 0.419753 0.000000 0.469136 0.345679 0.234568 0.000000 0.419753 0.580247 0.098765 0.148148 0.172840 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATYHATC MEME-2 regular expression -------------------------------------------------------------------------------- [CA]AT[TC][TAC]ATC -------------------------------------------------------------------------------- Time 9.15 secs. ******************************************************************************** ******************************************************************************** MOTIF RARAARAR MEME-3 width = 8 sites = 47 llr = 389 E-value = 1.6e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif RARAARAR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4a6aa6a3 pos.-specific C :::::::: probability G 6:4::4:7 matrix T :::::::: bits 2.1 1.9 * ** * 1.7 * ** * 1.5 * ** * Relative 1.3 * ** * Entropy 1.0 ******** (11.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAAAAAG consensus A G G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARAARAR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:9731454-9731534 34 1.75e-05 ATGGGCGGCG GAAAAAAG TTGAAAACTC chrI:7129564-7129644 40 1.75e-05 GAGTGCGAAA GAAAAAAG ATCTATCGGT chrX:13383458-13383538 68 1.75e-05 TGGGCCaaaa gaaaaaag aacac chrV:12536469-12536549 40 1.75e-05 CGTTATGTTT GAAAAAAG ACAAACTTTC chrII:8956128-8956208 39 1.75e-05 CGCGCCCACT GAAAAAAG GAAAAGTCGT chrIII:3437356-3437436 14 1.75e-05 ttttttTGGT GAAAAAAG ATGAAACTGA chrV:16821391-16821471 45 3.32e-05 GGCAAAGGGA GAAAAGAG GGCGTGGTTT chrV:12326806-12326886 36 3.32e-05 GTGGCTCGCG GAAAAGAG TTCGACGCAT chrIV:13699633-13699713 19 3.32e-05 TACTGCACTG GAAAAGAG CAGCTATTTG chrIII:5371691-5371771 24 3.32e-05 TTGTTGCAGA GAAAAGAG TCAAGAGAAG chrI:2280373-2280453 64 3.32e-05 ATCGCGAAAA GAAAAGAG TCACTGGAG chrIII:4497901-4497981 72 5.26e-05 aaacaaagaa aaaaaaag a chrI:6638888-6638968 70 5.26e-05 ATAAGCATGA AAAAAAAG AGG chrIII:5708180-5708260 69 5.26e-05 ATGAAAATGT AAAAAAAG AAGC chrI:2663719-2663799 71 5.26e-05 CCAACCGCCC AAAAAAAG GG chrIV:6836898-6836978 42 5.26e-05 ACTCTTGAAG AAAAAAAG CCGAGACATC chrIII:3222537-3222617 17 5.26e-05 aaaaaccaga aaaaaaag aaaaaaaaag chrIII:9224908-9224988 40 5.26e-05 AAAAGAACCC AAAAAAAG ACAAAAGAGA chrII:1360448-1360528 43 5.26e-05 GAGAAAATAC AAAAAAAG TGAAACAAAA chrII:11496919-11496999 21 8.57e-05 CAATCACAAG AAAAAGAG ACATAGATAT chrX:13493936-13494016 3 8.57e-05 AG GAGAAAAG GCGATTGGTT chrX:3126434-3126514 3 8.57e-05 CA GAGAAAAG CGCTGAAGCG chrIV:7897522-7897602 52 8.57e-05 GAAACGAGAC AAAAAGAG TGAAGAGACG chrIII:360437-360517 45 8.57e-05 AAACAGCACA AAAAAGAG TGGAGGAAGC chrI:3313251-3313331 22 9.99e-05 GTGAGAGAGA GAGAAGAG CCcatcatca chrII:6707645-6707725 69 9.99e-05 TCCGGGAGCT GAGAAGAG ATGA chrII:14270651-14270731 12 9.99e-05 TGTATGTGTG GAGAAGAG AGAGAGAGGA chrIV:1279081-1279161 53 9.99e-05 ACGAGTGAAT GAGAAGAG AAGGAGCCAG chrII:9299809-9299889 6 9.99e-05 GGAAT GAGAAGAG GGAGGAGCCT chrIII:6364606-6364686 1 1.17e-04 . AAGAAAAG TGGGAGAGAG chrI:3298428-3298508 52 1.52e-04 GAGCACAAAA AAGAAGAG CAAATTTGTG chrIII:6135365-6135445 3 1.52e-04 CC GAAAAAAA AACGATTAGG chrX:5028479-5028559 26 1.52e-04 GCTTTCTCCT GAAAAAAA TGAATGATAA chrX:14495190-14495270 70 1.70e-04 TTTGGCATCC GAAAAGAA GGA chrX:8390656-8390736 7 1.91e-04 ACGTCA AAAAAAAA TTAGAGATTT chrV:11507514-11507594 41 2.28e-04 TGGAGTCATG AAAAAGAA GCAGAGAGAC chrX:3802945-3803025 71 2.28e-04 AGAATTTTTG AAAAAGAA GC chrX:12406229-12406309 17 2.28e-04 ACGGGTCAGA GAGAAAAA TGGGAGGAGA chrI:1870867-1870947 46 2.28e-04 CTATAAAATA GAGAAAAA GCCGAGACCT chrX:3455713-3455793 5 2.28e-04 CACG GAGAAAAA CGCGGCAGCA chrV:5959254-5959334 7 2.28e-04 CGAAAC AAAAAGAA CATGTGCGGA chrII:1338352-1338432 55 2.44e-04 TAGAGACGCA GAGAAGAA TAATGAGTTT chrIV:12425715-12425795 26 2.44e-04 ATCCAAAAAG GAGAAGAA GCCTAGAATG chrX:12917916-12917996 7 2.63e-04 AAATAA AAGAAAAA CATACACACG chrI:9200830-9200910 14 2.63e-04 CCCAAAACCA AAGAAAAA ACAAGCAAGC chrIV:5111325-5111405 67 2.63e-04 GCAAAATTTC AAgaaaaa tgcgaa chrIV:10420158-10420238 9 2.81e-04 AGAAGTCG AAGAAGAA CGAGAACGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARAARAR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:9731454-9731534 1.7e-05 33_[+3]_39 chrI:7129564-7129644 1.7e-05 39_[+3]_33 chrX:13383458-13383538 1.7e-05 67_[+3]_5 chrV:12536469-12536549 1.7e-05 39_[+3]_33 chrII:8956128-8956208 1.7e-05 38_[+3]_34 chrIII:3437356-3437436 1.7e-05 13_[+3]_59 chrV:16821391-16821471 3.3e-05 44_[+3]_28 chrV:12326806-12326886 3.3e-05 35_[+3]_37 chrIV:13699633-13699713 3.3e-05 18_[+3]_54 chrIII:5371691-5371771 3.3e-05 23_[+3]_49 chrI:2280373-2280453 3.3e-05 63_[+3]_9 chrIII:4497901-4497981 5.3e-05 71_[+3]_1 chrI:6638888-6638968 5.3e-05 69_[+3]_3 chrIII:5708180-5708260 5.3e-05 68_[+3]_4 chrI:2663719-2663799 5.3e-05 70_[+3]_2 chrIV:6836898-6836978 5.3e-05 41_[+3]_31 chrIII:3222537-3222617 5.3e-05 16_[+3]_56 chrIII:9224908-9224988 5.3e-05 39_[+3]_33 chrII:1360448-1360528 5.3e-05 42_[+3]_30 chrII:11496919-11496999 8.6e-05 20_[+3]_52 chrX:13493936-13494016 8.6e-05 2_[+3]_70 chrX:3126434-3126514 8.6e-05 2_[+3]_70 chrIV:7897522-7897602 8.6e-05 51_[+3]_21 chrIII:360437-360517 8.6e-05 44_[+3]_28 chrI:3313251-3313331 0.0001 21_[+3]_51 chrII:6707645-6707725 0.0001 68_[+3]_4 chrII:14270651-14270731 0.0001 11_[+3]_61 chrIV:1279081-1279161 0.0001 52_[+3]_20 chrII:9299809-9299889 0.0001 5_[+3]_67 chrIII:6364606-6364686 0.00012 [+3]_72 chrI:3298428-3298508 0.00015 51_[+3]_21 chrIII:6135365-6135445 0.00015 2_[+3]_70 chrX:5028479-5028559 0.00015 25_[+3]_47 chrX:14495190-14495270 0.00017 69_[+3]_3 chrX:8390656-8390736 0.00019 6_[+3]_66 chrV:11507514-11507594 0.00023 40_[+3]_32 chrX:3802945-3803025 0.00023 70_[+3]_2 chrX:12406229-12406309 0.00023 16_[+3]_56 chrI:1870867-1870947 0.00023 45_[+3]_27 chrX:3455713-3455793 0.00023 4_[+3]_68 chrV:5959254-5959334 0.00023 6_[+3]_66 chrII:1338352-1338432 0.00024 54_[+3]_18 chrIV:12425715-12425795 0.00024 25_[+3]_47 chrX:12917916-12917996 0.00026 6_[+3]_66 chrI:9200830-9200910 0.00026 13_[+3]_59 chrIV:5111325-5111405 0.00026 66_[+3]_6 chrIV:10420158-10420238 0.00028 8_[+3]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARAARAR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RARAARAR width=8 seqs=47 chrIII:9731454-9731534 ( 34) GAAAAAAG 1 chrI:7129564-7129644 ( 40) GAAAAAAG 1 chrX:13383458-13383538 ( 68) GAAAAAAG 1 chrV:12536469-12536549 ( 40) GAAAAAAG 1 chrII:8956128-8956208 ( 39) GAAAAAAG 1 chrIII:3437356-3437436 ( 14) GAAAAAAG 1 chrV:16821391-16821471 ( 45) GAAAAGAG 1 chrV:12326806-12326886 ( 36) GAAAAGAG 1 chrIV:13699633-13699713 ( 19) GAAAAGAG 1 chrIII:5371691-5371771 ( 24) GAAAAGAG 1 chrI:2280373-2280453 ( 64) GAAAAGAG 1 chrIII:4497901-4497981 ( 72) AAAAAAAG 1 chrI:6638888-6638968 ( 70) AAAAAAAG 1 chrIII:5708180-5708260 ( 69) AAAAAAAG 1 chrI:2663719-2663799 ( 71) AAAAAAAG 1 chrIV:6836898-6836978 ( 42) AAAAAAAG 1 chrIII:3222537-3222617 ( 17) AAAAAAAG 1 chrIII:9224908-9224988 ( 40) AAAAAAAG 1 chrII:1360448-1360528 ( 43) AAAAAAAG 1 chrII:11496919-11496999 ( 21) AAAAAGAG 1 chrX:13493936-13494016 ( 3) GAGAAAAG 1 chrX:3126434-3126514 ( 3) GAGAAAAG 1 chrIV:7897522-7897602 ( 52) AAAAAGAG 1 chrIII:360437-360517 ( 45) AAAAAGAG 1 chrI:3313251-3313331 ( 22) GAGAAGAG 1 chrII:6707645-6707725 ( 69) GAGAAGAG 1 chrII:14270651-14270731 ( 12) GAGAAGAG 1 chrIV:1279081-1279161 ( 53) GAGAAGAG 1 chrII:9299809-9299889 ( 6) GAGAAGAG 1 chrIII:6364606-6364686 ( 1) AAGAAAAG 1 chrI:3298428-3298508 ( 52) AAGAAGAG 1 chrIII:6135365-6135445 ( 3) GAAAAAAA 1 chrX:5028479-5028559 ( 26) GAAAAAAA 1 chrX:14495190-14495270 ( 70) GAAAAGAA 1 chrX:8390656-8390736 ( 7) AAAAAAAA 1 chrV:11507514-11507594 ( 41) AAAAAGAA 1 chrX:3802945-3803025 ( 71) AAAAAGAA 1 chrX:12406229-12406309 ( 17) GAGAAAAA 1 chrI:1870867-1870947 ( 46) GAGAAAAA 1 chrX:3455713-3455793 ( 5) GAGAAAAA 1 chrV:5959254-5959334 ( 7) AAAAAGAA 1 chrII:1338352-1338432 ( 55) GAGAAGAA 1 chrIV:12425715-12425795 ( 26) GAGAAGAA 1 chrX:12917916-12917996 ( 7) AAGAAAAA 1 chrI:9200830-9200910 ( 14) AAGAAAAA 1 chrIV:5111325-5111405 ( 67) AAGAAAAA 1 chrIV:10420158-10420238 ( 9) AAGAAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARAARAR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6953 E= 1.6e-011 78 -1220 123 -1220 194 -1220 -1220 -1220 124 -1220 70 -1220 194 -1220 -1220 -1220 194 -1220 -1220 -1220 108 -1220 92 -1220 194 -1220 -1220 -1220 38 -1220 149 -1220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARAARAR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 1.6e-011 0.446809 0.000000 0.553191 0.000000 1.000000 0.000000 0.000000 0.000000 0.617021 0.000000 0.382979 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.553191 0.000000 0.446809 0.000000 1.000000 0.000000 0.000000 0.000000 0.340426 0.000000 0.659574 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARAARAR MEME-3 regular expression -------------------------------------------------------------------------------- [GA]A[AG]AA[AG]A[GA] -------------------------------------------------------------------------------- Time 13.76 secs. ******************************************************************************** ******************************************************************************** MOTIF CTYTTTYT MEME-4 width = 8 sites = 73 llr = 529 E-value = 1.5e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTYTTTYT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 8:422:41 probability G :::1:::: matrix T 2a678a69 bits 2.1 1.9 * 1.7 * * 1.5 * * * Relative 1.3 ** ** * Entropy 1.0 *** **** (10.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTTTTTT consensus T CC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTTYT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2498751-2498831 50 2.15e-05 CTGTCGGGTG CTTTTTTT GTTTCGTGCA chrI:8120319-8120399 69 2.15e-05 GTGTCGTTTT CTTTTTTT GCTG chrX:14495190-14495270 26 2.15e-05 TCCTCTTGTC CTTTTTTT CTTCAAAATT chrI:1598578-1598658 55 2.15e-05 ACGTCTTCTA CTTTTTTT TTTGCTCGCT chrV:4497286-4497366 43 2.15e-05 GAATCCATCC CTTTTTTT TTGGTGTGCT chrV:4495214-4495294 61 2.15e-05 ATTCTCCTTC CTTTTTTT GCCTCCGTCC chrI:1582038-1582118 43 2.15e-05 GCTCCCCCTT CTTTTTTT TTTGATGTGC chrIV:11348953-11349033 49 2.15e-05 TGTCTAGTCT CTTTTTTT GAAAGCAAGA chrIII:3437356-3437436 1 2.15e-05 . cttttttt tTGGTGAAAA chrIII:5989430-5989510 4 2.15e-05 TCT CTTTTTTT TGCTGACAAG chrII:10829744-10829824 2 2.15e-05 G CTTTTTTT AGAGCCAAAA chrI:1313751-1313831 19 2.15e-05 GCTTTCTGCT CTTTTTTT CTCTGTCATC chrI:12677815-12677895 55 4.10e-05 GCGGGAGGGG CTCTTTTT AGTCACCCAG chrI:9964703-9964783 52 4.10e-05 TGTCTCTTCA CTCTTTTT CGATCTTTTC chrV:6033650-6033730 43 4.10e-05 GGCCAAATGA CTCTTTTT TGAGTCTTTT chrV:1890212-1890292 59 4.10e-05 AGAGCATGAG CTCTTTTT GTTGAGATGT chrII:10969610-10969690 30 4.10e-05 CGATTTATCA CTCTTTTT GTTGCCAAGA chrX:9600291-9600371 53 6.05e-05 GTCTTTGGTC CTTTTTCT TAAAAGCCCA chrIV:1827487-1827567 48 6.05e-05 CCCAGAGGCC CTTTTTCT CGATTAACCG chrI:1870867-1870947 27 6.05e-05 AGGAGCCCTT CTTTTTCT TCTATAAAAT chrV:3409692-3409772 47 6.05e-05 TTTCTCAGAG CTTTTTCT GCCAATTTAT chrII:7838803-7838883 27 7.82e-05 ctatgtttct ctctttct ctaaatctct chrII:6916033-6916113 18 7.82e-05 TCACGCTAAT CTCTTTCT CCCCTTGCTC chrI:435520-435600 67 7.82e-05 TCATTTTCct ctctttct ctctct chrI:1583426-1583506 56 7.82e-05 GGGGGTCGTC CTCTTTCT CTATTTAATC chrI:961360-961440 70 7.82e-05 AGAAACGTCT CTCTTTCT GCG chrX:7678621-7678701 63 9.77e-05 CGTCCTTTTC CTTCTTTT TCATGCTTCT chrIV:13000124-13000204 35 9.77e-05 CTCACTTCTT CTTCTTTT TCAGCCCCCT chrIV:4667544-4667624 17 1.15e-04 TCTCCAGGGA CTCCTTTT GAAGGAAGGA chrII:1344755-1344835 69 1.15e-04 ACCCCGTTTT CTCCTTTT GGAA chrX:9798677-9798757 73 1.15e-04 TATCTTTTCT CTCCTTTT chrX:16402462-16402542 20 1.15e-04 GAATGCGCTG CTCCTTTT TCCGTACTCC chrX:13196343-13196423 59 1.39e-04 CCCTGTCCAA TTTTTTTT GTTCCCCTCC chrI:1720704-1720784 17 1.57e-04 CATCTttctt cttcttct tcatcttctg chrI:9962850-9962930 71 1.57e-04 Actttttgtt cttcttct tc chrII:7213886-7213966 20 1.57e-04 TTTTCGACGT CTTCTTCT CCTCCTTCCA chrIV:8069322-8069402 17 1.57e-04 CATGAAGctt cttcttct tcttattctt chrII:8451574-8451654 23 1.57e-04 CACAAGCGGG CTTCTTCT CGCACCCGCG chrX:11464589-11464669 70 1.78e-04 CATTTTTATT TTCTTTTT TCC chrIV:11354150-11354230 69 1.78e-04 TCCTCCGGTT TTCTTTTT GACT chrX:12381983-12382063 44 1.78e-04 TCGGCTTCAT TTCTTTTT GACCTCATCG chrIII:9851642-9851722 69 2.14e-04 TCTCCGCCAG CTCCTTCT CATT chrX:9552050-9552130 34 2.14e-04 TGCGTTGTGC CTTTCTTT TCGCCACAAC chrIII:4108280-4108360 39 2.35e-04 CTCCTCTCGT TTTTTTCT GTTGTCAGCA chrX:8727441-8727521 70 2.53e-04 TCGTTTGCAA CTCTCTTT AAG chrX:1242116-1242196 65 2.53e-04 TTCTTCCTCT CTCTCTTT GCCCCTTT chrIII:9346245-9346325 3 2.53e-04 TT CTCTCTTT TGCCTCCTTC chrI:1540581-1540661 65 2.92e-04 GCCCGTGTGT TTCTTTCT CCATTGCC chrIV:4581029-4581109 50 2.92e-04 AACCACTTTT CTTGTTTT GTTCCTTCCT chrII:7640619-7640699 56 3.27e-04 ATGCGCTGCT CTCGTTTT CTACTCGCTT chrX:4933148-4933228 63 3.64e-04 TCGTCCAAct ctctctct ctcacgggct chrI:4915725-4915805 65 3.64e-04 ACTGGATACG TTTCTTTT GGTTGTCG chrII:6834763-6834843 68 4.72e-04 TCTCTCCCGT CTTCCTTT CTTCT chrV:13658093-13658173 67 4.72e-04 CGGACAGCGT CTTCCTTT GAAATG chrI:6275738-6275818 5 4.72e-04 AGCT CTCGTTCT TCTTGAGAGG chrV:8652284-8652364 2 5.25e-04 C CTTTTTCC TTCCACATCT chrII:9109353-9109433 21 5.25e-04 AGGCCGTGTC CTTTTTCC TAGCAAGACT chrV:8166093-8166173 64 5.97e-04 TTACGATCAA CTCTTTCC GGTGCCATG chrV:1231725-1231805 62 6.71e-04 ACTACGACTA Cttttgtt tgtgttgttg chrIV:10817706-10817786 12 6.71e-04 CTCCTTCAGT CTTTTGTT TATGTGCTCT chrI:3298428-3298508 70 6.71e-04 CAAATTTGTG TTTGTTTT TGT chrI:7830399-7830479 9 6.71e-04 AAAAAGCC CTTTTGTT CGGTGCCCAC chrI:954424-954504 1 6.71e-04 . TTTGTTTT GGAGAAAGGG chrII:6823383-6823463 2 7.08e-04 T TTTTCTCT GGCGATCGGC chrI:13025673-13025753 73 7.08e-04 ATTTCGTCGT CTTCTTTC chrIII:4019059-4019139 47 7.08e-04 CTCCCGTCGT TTTTCTCT CCGCGCCCTC chrIII:8788867-8788947 30 7.08e-04 TCGATTCCCC TTTTCTCT TCGTCTCGCC chrI:5690268-5690348 60 7.45e-04 ATGATGGCAT TTCGTTTt gtgtgtgtgt chrI:14920307-14920387 13 7.45e-04 GTTTTGGTTT TTCGTTTT GAGAAATAGT chrX:9702967-9703047 47 7.96e-04 CATCCGTCGT CTCCTTTC TCAAGATTGA chrV:12111164-12111244 26 7.96e-04 TTAGATGTTC TTCTCTCT GCTCACTGCA chrX:12902413-12902493 70 7.96e-04 TTCTTCGTGC TTCTCTCT TGC chrI:14193628-14193708 26 8.54e-04 TCCAACCCCA TTTTTTTC CCAAAGATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTTYT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2498751-2498831 2.1e-05 49_[+4]_23 chrI:8120319-8120399 2.1e-05 68_[+4]_4 chrX:14495190-14495270 2.1e-05 25_[+4]_47 chrI:1598578-1598658 2.1e-05 54_[+4]_18 chrV:4497286-4497366 2.1e-05 42_[+4]_30 chrV:4495214-4495294 2.1e-05 60_[+4]_12 chrI:1582038-1582118 2.1e-05 42_[+4]_30 chrIV:11348953-11349033 2.1e-05 48_[+4]_24 chrIII:3437356-3437436 2.1e-05 [+4]_72 chrIII:5989430-5989510 2.1e-05 3_[+4]_69 chrII:10829744-10829824 2.1e-05 1_[+4]_71 chrI:1313751-1313831 2.1e-05 18_[+4]_54 chrI:12677815-12677895 4.1e-05 54_[+4]_18 chrI:9964703-9964783 4.1e-05 51_[+4]_21 chrV:6033650-6033730 4.1e-05 42_[+4]_30 chrV:1890212-1890292 4.1e-05 58_[+4]_14 chrII:10969610-10969690 4.1e-05 29_[+4]_43 chrX:9600291-9600371 6e-05 52_[+4]_20 chrIV:1827487-1827567 6e-05 47_[+4]_25 chrI:1870867-1870947 6e-05 26_[+4]_46 chrV:3409692-3409772 6e-05 46_[+4]_26 chrII:7838803-7838883 7.8e-05 26_[+4]_46 chrII:6916033-6916113 7.8e-05 17_[+4]_55 chrI:435520-435600 7.8e-05 66_[+4]_6 chrI:1583426-1583506 7.8e-05 55_[+4]_17 chrI:961360-961440 7.8e-05 69_[+4]_3 chrX:7678621-7678701 9.8e-05 62_[+4]_10 chrIV:13000124-13000204 9.8e-05 34_[+4]_38 chrIV:4667544-4667624 0.00012 16_[+4]_56 chrII:1344755-1344835 0.00012 68_[+4]_4 chrX:9798677-9798757 0.00012 72_[+4] chrX:16402462-16402542 0.00012 19_[+4]_53 chrX:13196343-13196423 0.00014 58_[+4]_14 chrI:1720704-1720784 0.00016 16_[+4]_56 chrI:9962850-9962930 0.00016 70_[+4]_2 chrII:7213886-7213966 0.00016 19_[+4]_53 chrIV:8069322-8069402 0.00016 16_[+4]_56 chrII:8451574-8451654 0.00016 22_[+4]_50 chrX:11464589-11464669 0.00018 69_[+4]_3 chrIV:11354150-11354230 0.00018 68_[+4]_4 chrX:12381983-12382063 0.00018 43_[+4]_29 chrIII:9851642-9851722 0.00021 68_[+4]_4 chrX:9552050-9552130 0.00021 33_[+4]_39 chrIII:4108280-4108360 0.00024 38_[+4]_34 chrX:8727441-8727521 0.00025 69_[+4]_3 chrX:1242116-1242196 0.00025 64_[+4]_8 chrIII:9346245-9346325 0.00025 2_[+4]_70 chrI:1540581-1540661 0.00029 64_[+4]_8 chrIV:4581029-4581109 0.00029 49_[+4]_23 chrII:7640619-7640699 0.00033 55_[+4]_17 chrX:4933148-4933228 0.00036 62_[+4]_10 chrI:4915725-4915805 0.00036 64_[+4]_8 chrII:6834763-6834843 0.00047 67_[+4]_5 chrV:13658093-13658173 0.00047 66_[+4]_6 chrI:6275738-6275818 0.00047 4_[+4]_68 chrV:8652284-8652364 0.00053 1_[+4]_71 chrII:9109353-9109433 0.00053 20_[+4]_52 chrV:8166093-8166173 0.0006 63_[+4]_9 chrV:1231725-1231805 0.00067 61_[+4]_11 chrIV:10817706-10817786 0.00067 11_[+4]_61 chrI:3298428-3298508 0.00067 69_[+4]_3 chrI:7830399-7830479 0.00067 8_[+4]_64 chrI:954424-954504 0.00067 [+4]_72 chrII:6823383-6823463 0.00071 1_[+4]_71 chrI:13025673-13025753 0.00071 72_[+4] chrIII:4019059-4019139 0.00071 46_[+4]_26 chrIII:8788867-8788947 0.00071 29_[+4]_43 chrI:5690268-5690348 0.00074 59_[+4]_13 chrI:14920307-14920387 0.00074 12_[+4]_60 chrX:9702967-9703047 0.0008 46_[+4]_26 chrV:12111164-12111244 0.0008 25_[+4]_47 chrX:12902413-12902493 0.0008 69_[+4]_3 chrI:14193628-14193708 0.00085 25_[+4]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTTYT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTYTTTYT width=8 seqs=73 chrX:2498751-2498831 ( 50) CTTTTTTT 1 chrI:8120319-8120399 ( 69) CTTTTTTT 1 chrX:14495190-14495270 ( 26) CTTTTTTT 1 chrI:1598578-1598658 ( 55) CTTTTTTT 1 chrV:4497286-4497366 ( 43) CTTTTTTT 1 chrV:4495214-4495294 ( 61) CTTTTTTT 1 chrI:1582038-1582118 ( 43) CTTTTTTT 1 chrIV:11348953-11349033 ( 49) CTTTTTTT 1 chrIII:3437356-3437436 ( 1) CTTTTTTT 1 chrIII:5989430-5989510 ( 4) CTTTTTTT 1 chrII:10829744-10829824 ( 2) CTTTTTTT 1 chrI:1313751-1313831 ( 19) CTTTTTTT 1 chrI:12677815-12677895 ( 55) CTCTTTTT 1 chrI:9964703-9964783 ( 52) CTCTTTTT 1 chrV:6033650-6033730 ( 43) CTCTTTTT 1 chrV:1890212-1890292 ( 59) CTCTTTTT 1 chrII:10969610-10969690 ( 30) CTCTTTTT 1 chrX:9600291-9600371 ( 53) CTTTTTCT 1 chrIV:1827487-1827567 ( 48) CTTTTTCT 1 chrI:1870867-1870947 ( 27) CTTTTTCT 1 chrV:3409692-3409772 ( 47) CTTTTTCT 1 chrII:7838803-7838883 ( 27) CTCTTTCT 1 chrII:6916033-6916113 ( 18) CTCTTTCT 1 chrI:435520-435600 ( 67) CTCTTTCT 1 chrI:1583426-1583506 ( 56) CTCTTTCT 1 chrI:961360-961440 ( 70) CTCTTTCT 1 chrX:7678621-7678701 ( 63) CTTCTTTT 1 chrIV:13000124-13000204 ( 35) CTTCTTTT 1 chrIV:4667544-4667624 ( 17) CTCCTTTT 1 chrII:1344755-1344835 ( 69) CTCCTTTT 1 chrX:9798677-9798757 ( 73) CTCCTTTT 1 chrX:16402462-16402542 ( 20) CTCCTTTT 1 chrX:13196343-13196423 ( 59) TTTTTTTT 1 chrI:1720704-1720784 ( 17) CTTCTTCT 1 chrI:9962850-9962930 ( 71) CTTCTTCT 1 chrII:7213886-7213966 ( 20) CTTCTTCT 1 chrIV:8069322-8069402 ( 17) CTTCTTCT 1 chrII:8451574-8451654 ( 23) CTTCTTCT 1 chrX:11464589-11464669 ( 70) TTCTTTTT 1 chrIV:11354150-11354230 ( 69) TTCTTTTT 1 chrX:12381983-12382063 ( 44) TTCTTTTT 1 chrIII:9851642-9851722 ( 69) CTCCTTCT 1 chrX:9552050-9552130 ( 34) CTTTCTTT 1 chrIII:4108280-4108360 ( 39) TTTTTTCT 1 chrX:8727441-8727521 ( 70) CTCTCTTT 1 chrX:1242116-1242196 ( 65) CTCTCTTT 1 chrIII:9346245-9346325 ( 3) CTCTCTTT 1 chrI:1540581-1540661 ( 65) TTCTTTCT 1 chrIV:4581029-4581109 ( 50) CTTGTTTT 1 chrII:7640619-7640699 ( 56) CTCGTTTT 1 chrX:4933148-4933228 ( 63) CTCTCTCT 1 chrI:4915725-4915805 ( 65) TTTCTTTT 1 chrII:6834763-6834843 ( 68) CTTCCTTT 1 chrV:13658093-13658173 ( 67) CTTCCTTT 1 chrI:6275738-6275818 ( 5) CTCGTTCT 1 chrV:8652284-8652364 ( 2) CTTTTTCC 1 chrII:9109353-9109433 ( 21) CTTTTTCC 1 chrV:8166093-8166173 ( 64) CTCTTTCC 1 chrV:1231725-1231805 ( 62) CTTTTGTT 1 chrIV:10817706-10817786 ( 12) CTTTTGTT 1 chrI:3298428-3298508 ( 70) TTTGTTTT 1 chrI:7830399-7830479 ( 9) CTTTTGTT 1 chrI:954424-954504 ( 1) TTTGTTTT 1 chrII:6823383-6823463 ( 2) TTTTCTCT 1 chrI:13025673-13025753 ( 73) CTTCTTTC 1 chrIII:4019059-4019139 ( 47) TTTTCTCT 1 chrIII:8788867-8788947 ( 30) TTTTCTCT 1 chrI:5690268-5690348 ( 60) TTCGTTTT 1 chrI:14920307-14920387 ( 13) TTCGTTTT 1 chrX:9702967-9703047 ( 47) CTCCTTTC 1 chrV:12111164-12111244 ( 26) TTCTCTCT 1 chrX:12902413-12902493 ( 70) TTCTCTCT 1 chrI:14193628-14193708 ( 26) TTTTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTTYT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.8233 E= 1.5e-009 -1283 168 -1283 -18 -1283 -1283 -1283 192 -1283 83 -1283 112 -1283 -4 -130 135 -1283 -54 -1283 166 -1283 -1283 -252 186 -1283 63 -1283 125 -1283 -154 -1283 180 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTTYT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 1.5e-009 0.000000 0.767123 0.000000 0.232877 0.000000 0.000000 0.000000 1.000000 0.000000 0.424658 0.000000 0.575342 0.000000 0.232877 0.095890 0.671233 0.000000 0.164384 0.000000 0.835616 0.000000 0.000000 0.041096 0.958904 0.000000 0.369863 0.000000 0.630137 0.000000 0.082192 0.000000 0.917808 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTTYT MEME-4 regular expression -------------------------------------------------------------------------------- [CT]T[TC][TC]TT[TC]T -------------------------------------------------------------------------------- Time 17.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGARAGA MEME-5 width = 8 sites = 28 llr = 247 E-value = 3.5e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGARAGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :8:a4a:7 pos.-specific C 3::::::: probability G 72a:6:a3 matrix T :::::::: bits 2.1 * * 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 **** ** Entropy 1.0 ******** (12.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus C A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6364606-6364686 12 1.42e-05 AGAAAAGTGG GAGAGAGA GTGAAGGATA chrIV:5100295-5100375 63 1.42e-05 gagagagaaa gagagaga gTACGCGCAC chrI:3313251-3313331 14 1.42e-05 GAGCTGGAGT GAGAGAGA GAGAAGAGCC chrX:14744709-14744789 57 1.42e-05 AATAGGAGGA GAGAGAGA GTGGTCAGTG chrIII:4460386-4460466 50 1.42e-05 GTTTCTCCGA GAGAGAGA GGCCCATAAT chrI:35410-35490 64 1.42e-05 GCAGACACAA GAGAGAGA GTACGTGAA chrI:2678237-2678317 42 1.42e-05 ACCGAGTGAG GAGAGAGA GCACTGCTAA chrII:1360448-1360528 71 1.42e-05 AGTAGTTTGA GAGAGAGA GT chrV:11023339-11023419 4 2.99e-05 ACC GAGAAAGA AAGGACCCGT chrI:7129564-7129644 22 2.99e-05 CAACTGATAT GAGAAAGA GAGTGCGAAA chrI:5690268-5690348 18 2.99e-05 GGGGATGGAA GAGAAAGA TTTGTGTGGT chrV:11507514-11507594 50 5.71e-05 GAAAAAGAAG CAGAGAGA CTTGAGAAAC chrII:13500740-13500820 49 5.71e-05 TCCAGAGCTC CAGAGAGA GCTCATAATT chrX:11369016-11369096 55 5.71e-05 CCGACTGGGG GAGAGAGG GGGGACTCGT chrX:4623077-4623157 56 5.71e-05 CAGGCAATTT CAGAGAGA GTAGGAAAAT chrII:14270651-14270731 21 5.71e-05 GGAGAAGAGA GAGAGAGG AAAAGTCATT chrX:13383458-13383538 46 1.00e-04 AAATGTCACG CAGAAAGA CGAGTGGGCC chrI:14179842-14179922 49 1.00e-04 CACATGTCTC CAGAAAGA TGACAACGAT chrI:4423064-4423144 32 1.00e-04 ATTACTTCGT CAGAAAGA CAAATGGACG chrIV:3069902-3069982 72 1.00e-04 ATGAATGAGT GGGAGAGA T chrI:954424-954504 10 1.00e-04 TTTGTTTTG GAGAAAGG GGCGTTTTGT chrI:14071930-14072010 59 1.00e-04 ACCCTTTCGG GAGAAAGG CTTTTCGCTC chrV:5959254-5959334 59 1.13e-04 GGGTTTGTGG CAGAGAGG GTGGTGTGTA chrX:2498751-2498831 12 1.27e-04 ATTCGAGAAT GGGAAAGA AAGCTGGTTT chrI:1069223-1069303 26 1.66e-04 GAAAGGAGGG GGGAGAGG GAGGGCTTCG chrIII:4951400-4951480 18 1.66e-04 AATGGAAACC GGGAGAGG GGAGAGGCTC chrV:12111164-12111244 2 1.66e-04 G CAGAAAGG GTCCGTTTAG chrIII:6135365-6135445 25 1.66e-04 ATTAGGGTCC CGGAGAGA AACTGGGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6364606-6364686 1.4e-05 11_[+5]_61 chrIV:5100295-5100375 1.4e-05 62_[+5]_10 chrI:3313251-3313331 1.4e-05 13_[+5]_59 chrX:14744709-14744789 1.4e-05 56_[+5]_16 chrIII:4460386-4460466 1.4e-05 49_[+5]_23 chrI:35410-35490 1.4e-05 63_[+5]_9 chrI:2678237-2678317 1.4e-05 41_[+5]_31 chrII:1360448-1360528 1.4e-05 70_[+5]_2 chrV:11023339-11023419 3e-05 3_[+5]_69 chrI:7129564-7129644 3e-05 21_[+5]_51 chrI:5690268-5690348 3e-05 17_[+5]_55 chrV:11507514-11507594 5.7e-05 49_[+5]_23 chrII:13500740-13500820 5.7e-05 48_[+5]_24 chrX:11369016-11369096 5.7e-05 54_[+5]_18 chrX:4623077-4623157 5.7e-05 55_[+5]_17 chrII:14270651-14270731 5.7e-05 20_[+5]_52 chrX:13383458-13383538 0.0001 45_[+5]_27 chrI:14179842-14179922 0.0001 48_[+5]_24 chrI:4423064-4423144 0.0001 31_[+5]_41 chrIV:3069902-3069982 0.0001 71_[+5]_1 chrI:954424-954504 0.0001 9_[+5]_63 chrI:14071930-14072010 0.0001 58_[+5]_14 chrV:5959254-5959334 0.00011 58_[+5]_14 chrX:2498751-2498831 0.00013 11_[+5]_61 chrI:1069223-1069303 0.00017 25_[+5]_47 chrIII:4951400-4951480 0.00017 17_[+5]_55 chrV:12111164-12111244 0.00017 1_[+5]_71 chrIII:6135365-6135445 0.00017 24_[+5]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGARAGA width=8 seqs=28 chrIII:6364606-6364686 ( 12) GAGAGAGA 1 chrIV:5100295-5100375 ( 63) GAGAGAGA 1 chrI:3313251-3313331 ( 14) GAGAGAGA 1 chrX:14744709-14744789 ( 57) GAGAGAGA 1 chrIII:4460386-4460466 ( 50) GAGAGAGA 1 chrI:35410-35490 ( 64) GAGAGAGA 1 chrI:2678237-2678317 ( 42) GAGAGAGA 1 chrII:1360448-1360528 ( 71) GAGAGAGA 1 chrV:11023339-11023419 ( 4) GAGAAAGA 1 chrI:7129564-7129644 ( 22) GAGAAAGA 1 chrI:5690268-5690348 ( 18) GAGAAAGA 1 chrV:11507514-11507594 ( 50) CAGAGAGA 1 chrII:13500740-13500820 ( 49) CAGAGAGA 1 chrX:11369016-11369096 ( 55) GAGAGAGG 1 chrX:4623077-4623157 ( 56) CAGAGAGA 1 chrII:14270651-14270731 ( 21) GAGAGAGG 1 chrX:13383458-13383538 ( 46) CAGAAAGA 1 chrI:14179842-14179922 ( 49) CAGAAAGA 1 chrI:4423064-4423144 ( 32) CAGAAAGA 1 chrIV:3069902-3069982 ( 72) GGGAGAGA 1 chrI:954424-954504 ( 10) GAGAAAGG 1 chrI:14071930-14072010 ( 59) GAGAAAGG 1 chrV:5959254-5959334 ( 59) CAGAGAGG 1 chrX:2498751-2498831 ( 12) GGGAAAGA 1 chrI:1069223-1069303 ( 26) GGGAGAGG 1 chrIII:4951400-4951480 ( 18) GGGAGAGG 1 chrV:12111164-12111244 ( 2) CAGAAAGG 1 chrIII:6135365-6135445 ( 25) CGGAGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.307 E= 3.5e-003 -1145 42 153 -1145 165 -1145 -40 -1145 -1145 -1145 209 -1145 194 -1145 -1145 -1145 45 -1145 145 -1145 194 -1145 -1145 -1145 -1145 -1145 209 -1145 145 -1145 28 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 3.5e-003 0.000000 0.321429 0.678571 0.000000 0.821429 0.000000 0.178571 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.357143 0.000000 0.642857 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.714286 0.000000 0.285714 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-5 regular expression -------------------------------------------------------------------------------- [GC]AGA[GA]AG[AG] -------------------------------------------------------------------------------- Time 20.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:1313751-1313831 5.76e-03 18_[+4(2.15e-05)]_54 chrIV:10341828-10341908 1.04e-01 80 chrI:14071930-14072010 2.91e-02 80 chrIV:12425715-12425795 4.71e-02 80 chrI:4915725-4915805 3.65e-03 44_[+2(3.64e-05)]_28 chrII:10829744-10829824 5.69e-04 1_[+4(2.15e-05)]_42_[+1(6.71e-05)]_\ 21 chrIII:4108280-4108360 8.52e-02 80 chrX:3470482-3470562 3.60e-02 57_[+2(3.64e-05)]_15 chrII:10969610-10969690 7.96e-03 29_[+4(4.10e-05)]_43 chrX:8390656-8390736 8.87e-02 80 chrX:4154959-4155039 1.43e-01 80 chrIV:13694749-13694829 1.00e-01 80 chrI:1626575-1626655 1.38e-01 80 chrX:16402462-16402542 2.03e-02 80 chrV:5888972-5889052 2.32e-02 [+1(1.63e-05)]_72 chrIV:9194165-9194245 2.98e-01 80 chrIV:13000124-13000204 4.92e-03 34_[+4(9.77e-05)]_38 chrII:1360448-1360528 2.92e-05 8_[+2(3.64e-05)]_26_[+3(5.26e-05)]_\ 18_[+5(1.42e-05)]_4 chrI:6275738-6275818 3.76e-02 80 chrV:5959254-5959334 1.72e-03 80 chrII:1338352-1338432 1.29e-02 80 chrX:15027708-15027788 2.29e-02 80 chrI:961360-961440 5.50e-03 69_[+4(7.82e-05)]_3 chrI:14920307-14920387 3.52e-03 58_[+2(7.24e-05)]_14 chrV:13103883-13103963 8.33e-02 80 chrX:16999734-16999814 5.01e-01 80 chrV:6757026-6757106 1.97e-01 80 chrV:3409692-3409772 2.04e-02 46_[+4(6.05e-05)]_26 chrI:1583426-1583506 7.30e-02 36_[+4(9.77e-05)]_11_[+4(7.82e-05)]_\ 17 chrIII:8818481-8818561 7.55e-01 80 chrIV:5111325-5111405 3.49e-02 80 chrI:9200830-9200910 1.23e-02 80 chrIV:10065341-10065421 4.11e-02 80 chrX:3354720-3354800 8.15e-01 80 chrIII:8933857-8933937 5.74e-01 80 chrI:435520-435600 9.90e-03 21_[+2(7.24e-05)]_37_[+4(7.82e-05)]_\ 6 chrII:7893654-7893734 1.50e-03 54_[+2(3.64e-05)]_18 chrII:4575716-4575796 1.44e-01 80 chrX:4802515-4802595 8.66e-02 80 chrIII:9224908-9224988 2.72e-02 39_[+3(5.26e-05)]_33 chrIV:7725043-7725123 4.20e-01 80 chrX:11463154-11463234 2.91e-02 63_[+1(3.07e-05)]_9 chrX:9798677-9798757 2.43e-01 80 chrX:5028479-5028559 1.44e-02 80 chrII:8451574-8451654 1.84e-01 80 chrI:954424-954504 1.38e-02 80 chrI:2833332-2833412 2.81e-01 80 chrX:8808893-8808973 2.34e-03 16_[+1(1.63e-05)]_56 chrIV:3069902-3069982 2.81e-03 80 chrV:9396236-9396316 3.34e-02 80 chrI:2678237-2678317 2.56e-04 3_[+1(1.63e-05)]_30_[+5(1.42e-05)]_\ 31 chrIII:5989430-5989510 1.80e-02 3_[+4(2.15e-05)]_69 chrX:16997450-16997530 6.85e-01 80 chrX:9552050-9552130 3.97e-02 12_[+2(7.24e-05)]_60 chrII:7640619-7640699 5.99e-01 80 chrII:9299809-9299889 8.50e-03 5_[+3(9.99e-05)]_67 chrV:1228304-1228384 1.62e-02 48_[+1(1.63e-05)]_24 chrX:6574488-6574568 7.28e-01 80 chrIII:2553715-2553795 2.53e-01 80 chrIII:10126543-10126623 1.17e-01 80 chrX:4933148-4933228 1.42e-01 80 chrI:4423064-4423144 4.80e-02 80 chrII:8961616-8961696 2.94e-01 80 chrX:12917916-12917996 1.67e-01 80 chrV:8494481-8494561 4.12e-02 80 chrX:17520963-17521043 8.50e-01 80 chrI:10011703-10011783 3.00e-01 80 chrIV:1279081-1279161 1.63e-02 52_[+3(9.99e-05)]_20 chrIV:13689626-13689706 2.37e-02 80 chrI:10499695-10499775 3.77e-03 14_[+1(1.63e-05)]_58 chrX:8003835-8003915 5.77e-01 80 chrIV:8069322-8069402 1.94e-01 80 chrIII:3437356-3437436 1.19e-05 [+4(2.15e-05)]_5_[+3(1.75e-05)]_59 chrI:35410-35490 4.12e-02 63_[+5(1.42e-05)]_9 chrIV:17267657-17267737 3.42e-02 80 chrV:13778033-13778113 3.40e-02 35_[+2(7.24e-05)]_37 chrII:6916033-6916113 2.22e-02 17_[+4(7.82e-05)]_21_[+2(7.24e-05)]_\ 26 chrV:10722002-10722082 3.24e-01 80 chrIII:5991301-5991381 5.03e-02 37_[+1(1.63e-05)]_35 chrIII:10634726-10634806 4.53e-01 80 chrI:2154006-2154086 1.46e-01 50_[+2(7.24e-05)]_22 chrX:3455713-3455793 8.23e-03 80 chrV:13402591-13402671 4.35e-02 80 chrII:14270651-14270731 4.92e-03 16_[+5(1.42e-05)]_56 chrIV:6833756-6833836 2.88e-02 80 chrIV:8070438-8070518 8.45e-01 80 chrIII:9346245-9346325 1.15e-02 80 chrIII:3222537-3222617 7.37e-02 16_[+3(5.26e-05)]_2_[+3(5.26e-05)]_\ 46 chrI:14193628-14193708 9.10e-03 9_[+2(7.24e-05)]_63 chrV:8166093-8166173 2.05e-02 80 chrX:1109034-1109114 2.83e-02 63_[+1(6.71e-05)]_9 chrII:1344755-1344835 7.63e-04 2_[+1(1.63e-05)]_70 chrII:9576887-9576967 2.62e-01 80 chrX:10022124-10022204 1.17e-01 80 chrII:7213886-7213966 2.20e-02 56_[+2(3.64e-05)]_16 chrIV:11348953-11349033 1.45e-02 48_[+4(2.15e-05)]_24 chrII:5871659-5871739 1.16e-01 80 chrI:14179842-14179922 7.85e-04 63_[+1(1.63e-05)]_9 chrX:15994045-15994125 6.92e-02 80 chrX:10430885-10430965 1.08e-01 80 chrX:3179593-3179673 1.19e-01 80 chrX:1160706-1160786 6.80e-01 80 chrI:9962850-9962930 8.49e-02 80 chrIII:4460386-4460466 2.32e-03 47_[+5(1.42e-05)]_25 chrX:2338935-2339015 4.29e-02 24_[+1(1.63e-05)]_48 chrIV:6836898-6836978 1.94e-02 41_[+3(5.26e-05)]_31 chrX:7954478-7954558 1.81e-01 59_[+2(3.64e-05)]_13 chrV:15071136-15071216 1.44e-01 43_[+2(7.24e-05)]_29 chrII:8956128-8956208 1.18e-02 38_[+3(1.75e-05)]_34 chrIII:9084463-9084543 1.53e-03 27_[+2(3.64e-05)]_45 chrII:7895383-7895463 2.35e-02 80 chrII:7838803-7838883 2.02e-01 26_[+4(7.82e-05)]_46 chrI:1582038-1582118 2.65e-02 42_[+4(2.15e-05)]_30 chrV:1890212-1890292 7.18e-04 58_[+4(4.10e-05)]_14 chrX:12902413-12902493 3.93e-02 80 chrX:1242116-1242196 3.55e-03 80 chrI:8935143-8935223 4.35e-01 80 chrIV:1906931-1907011 2.67e-01 80 chrI:2280373-2280453 5.11e-03 63_[+3(3.32e-05)]_9 chrIV:10420158-10420238 1.15e-01 80 chrIV:4581029-4581109 1.63e-01 80 chrI:2679585-2679665 6.80e-02 80 chrIII:5371691-5371771 2.16e-03 23_[+3(3.32e-05)]_49 chrI:1870867-1870947 2.35e-03 26_[+4(6.05e-05)]_46 chrI:7830399-7830479 6.45e-02 80 chrI:5690268-5690348 1.04e-03 17_[+5(2.99e-05)]_55 chrII:13066915-13066995 5.23e-01 80 chrIII:6135365-6135445 4.75e-02 80 chrV:1149871-1149951 1.78e-01 80 chrV:13658093-13658173 3.09e-02 47_[+2(3.64e-05)]_25 chrX:7643203-7643283 1.96e-01 80 chrII:9109353-9109433 9.58e-02 80 chrII:6707645-6707725 4.06e-03 68_[+3(9.99e-05)]_4 chrI:10765822-10765902 6.08e-01 80 chrX:7681409-7681489 1.24e-02 80 chrX:10591574-10591654 4.76e-02 52_[+1(6.71e-05)]_20 chrV:4495214-4495294 8.90e-03 9_[+2(7.24e-05)]_43_[+4(2.15e-05)]_\ 12 chrII:5218514-5218594 7.14e-02 80 chrV:4497286-4497366 2.56e-02 42_[+4(2.15e-05)]_30 chrV:6033650-6033730 1.76e-02 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chrI:1720704-1720784 1.12e-02 80 chrIV:11453102-11453182 9.08e-02 80 chrII:9307127-9307207 3.89e-02 63_[+1(1.63e-05)]_9 chrIII:6248215-6248295 2.00e-01 80 chrX:7175513-7175593 4.64e-01 80 chrX:3024825-3024905 6.18e-01 80 chrX:3126434-3126514 9.34e-03 2_[+3(8.57e-05)]_70 chrI:9969531-9969611 9.42e-01 80 chrX:11369016-11369096 1.37e-01 54_[+5(5.71e-05)]_18 chrX:9702967-9703047 3.57e-03 58_[+1(1.63e-05)]_14 chrI:1488538-1488618 1.55e-01 80 chrV:12523511-12523591 5.37e-01 80 chrI:1701886-1701966 8.33e-01 80 chrIV:2217376-2217456 2.67e-01 80 chrI:1392968-1393048 7.29e-01 80 chrX:3440430-3440510 4.80e-01 80 chrI:3313251-3313331 6.37e-03 13_[+5(1.42e-05)]_[+3(9.99e-05)]_51 chrI:2306874-2306954 6.53e-01 80 chrII:8797409-8797489 8.45e-02 80 chrX:13383458-13383538 4.33e-03 67_[+3(1.75e-05)]_5 chrX:11463734-11463814 5.12e-02 80 chrI:529586-529666 3.14e-01 80 chrII:10770932-10771012 1.00e-01 80 chrIV:13695852-13695932 2.58e-02 11_[+1(6.71e-05)]_61 chrII:12662059-12662139 8.15e-01 80 chrI:3298428-3298508 3.03e-02 80 chrIII:4037519-4037599 4.73e-01 80 chrIII:11039386-11039466 8.43e-01 80 chrX:10576999-10577079 9.10e-01 80 chrX:2589340-2589420 7.26e-01 80 chrI:7708481-7708561 5.82e-03 80 chrIV:5960156-5960236 3.29e-01 80 chrIV:11354150-11354230 1.03e-01 80 chrIII:5708180-5708260 3.80e-03 38_[+1(3.07e-05)]_22_[+3(5.26e-05)]_\ 4 chrV:6350305-6350385 1.75e-01 71_[+1(3.07e-05)]_1 chrV:8652284-8652364 8.59e-03 45_[+2(3.64e-05)]_27 chrV:5583053-5583133 9.47e-02 80 chrI:7129564-7129644 7.89e-05 21_[+5(2.99e-05)]_10_[+3(1.75e-05)]_\ 33 chrIV:1827487-1827567 1.86e-02 47_[+4(6.05e-05)]_25 chrI:8120319-8120399 1.88e-02 68_[+4(2.15e-05)]_4 chrV:1364474-1364554 1.66e-01 22_[+2(3.64e-05)]_50 chrV:7891379-7891459 6.64e-01 80 chrIII:9731454-9731534 2.34e-04 18_[+1(1.63e-05)]_7_[+3(1.75e-05)]_\ 39 chrIII:8788867-8788947 5.88e-01 80 chrI:6638888-6638968 4.91e-02 69_[+3(5.26e-05)]_3 chrV:13111751-13111831 2.51e-01 80 chrIII:8451346-8451426 2.68e-01 80 chrII:6834763-6834843 5.80e-01 80 chrX:7678621-7678701 5.97e-02 62_[+4(9.77e-05)]_10 chrII:13500740-13500820 3.16e-03 48_[+5(5.71e-05)]_24 chrX:12406229-12406309 9.11e-03 12_[+5(5.71e-05)]_60 chrIII:4019059-4019139 1.79e-01 80 chrI:5087898-5087978 1.59e-01 80 chrIV:7611542-7611622 4.33e-01 80 chrX:11464589-11464669 2.63e-01 80 chrV:11023339-11023419 5.16e-02 3_[+5(2.99e-05)]_69 chrV:1229444-1229524 2.98e-01 80 chrI:13025673-13025753 4.49e-02 80 chrX:3802945-3803025 2.51e-02 80 chrV:11507514-11507594 9.19e-04 2_[+1(6.71e-05)]_39_[+5(5.71e-05)]_\ 23 chrV:16821391-16821471 2.00e-02 44_[+3(3.32e-05)]_28 chrI:13042278-13042358 7.13e-01 80 chrI:1069223-1069303 4.69e-02 80 chrIV:10817706-10817786 2.01e-01 80 chrI:7124593-7124673 6.79e-02 22_[+1(1.63e-05)]_50 chrII:6823383-6823463 1.29e-01 80 chrX:8727441-8727521 3.60e-03 23_[+1(3.07e-05)]_49 chrI:13505918-13505998 1.91e-02 80 chrI:12677815-12677895 1.34e-02 54_[+4(4.10e-05)]_18 chrII:8409561-8409641 1.91e-01 15_[+2(7.24e-05)]_57 chrX:13196343-13196423 4.02e-02 80 chrX:12527357-12527437 5.06e-02 80 chrV:1231725-1231805 8.03e-03 [+2(7.24e-05)]_72 chrIV:4667544-4667624 9.47e-02 80 chrX:6128453-6128533 3.17e-01 80 chrX:6146093-6146173 1.02e-01 80 chrX:9600291-9600371 2.00e-01 52_[+4(6.05e-05)]_20 chrIV:5100295-5100375 2.57e-02 52_[+5(1.42e-05)]_2_[+5(1.42e-05)]_\ 10 chrX:13493936-13494016 3.71e-02 2_[+3(8.57e-05)]_70 chrIII:9851642-9851722 3.74e-01 80 chrX:2498751-2498831 2.15e-04 49_[+4(2.15e-05)]_23 chrII:13903636-13903716 3.99e-01 80 chrIII:8146186-8146266 3.23e-02 80 chrIII:4497901-4497981 2.47e-02 71_[+3(5.26e-05)]_1 chrIII:6364606-6364686 6.01e-05 11_[+5(1.42e-05)]_17_[+1(1.63e-05)]_\ 36 chrI:12675361-12675441 7.23e-01 80 chrII:11496919-11496999 2.72e-03 7_[+2(7.24e-05)]_5_[+3(8.57e-05)]_\ 52 chrIV:1816697-1816777 1.16e-01 60_[+1(6.71e-05)]_12 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n11.farnam.hpc.yale.internal ********************************************************************************