******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/lin-35.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:3910628-3910708 1.0000 80 chrX:2969786-2969866 1.0000 80 chrIV:1177853-1177933 1.0000 80 chrIV:8869799-8869879 1.0000 80 chrIII:12278915-12278995 1.0000 80 chrII:8020379-8020459 1.0000 80 chrI:14560307-14560387 1.0000 80 chrI:10033545-10033625 1.0000 80 chrIV:11820209-11820289 1.0000 80 chrIII:12377431-12377511 1.0000 80 chrX:13350456-13350536 1.0000 80 chrM:13602-13682 1.0000 80 chrIII:5942227-5942307 1.0000 80 chrIII:7952248-7952328 1.0000 80 chrI:6038173-6038253 1.0000 80 chrII:7775155-7775235 1.0000 80 chrIII:4654175-4654255 1.0000 80 chrIII:11565755-11565835 1.0000 80 chrII:10926345-10926425 1.0000 80 chrX:9705728-9705808 1.0000 80 chrX:5117743-5117823 1.0000 80 chrIII:7737077-7737157 1.0000 80 chrII:13083891-13083971 1.0000 80 chrIII:4875868-4875948 1.0000 80 chrIII:2805253-2805333 1.0000 80 chrIII:2619729-2619809 1.0000 80 chrV:6593851-6593931 1.0000 80 chrV:10476787-10476867 1.0000 80 chrI:12043456-12043536 1.0000 80 chrI:1183970-1184050 1.0000 80 chrX:1451959-1452039 1.0000 80 chrV:18086927-18087007 1.0000 80 chrI:13161915-13161995 1.0000 80 chrV:20782772-20782852 1.0000 80 chrV:3712388-3712468 1.0000 80 chrII:15040474-15040554 1.0000 80 chrII:7778161-7778241 1.0000 80 chrIV:9403965-9404045 1.0000 80 chrIII:1533258-1533338 1.0000 80 chrIII:9468630-9468710 1.0000 80 chrI:1895100-1895180 1.0000 80 chrIV:10477926-10478006 1.0000 80 chrII:4828218-4828298 1.0000 80 chrV:6062-6142 1.0000 80 chrII:14035882-14035962 1.0000 80 chrIV:291535-291615 1.0000 80 chrV:5596523-5596603 1.0000 80 chrIII:1208011-1208091 1.0000 80 chrV:5204329-5204409 1.0000 80 chrI:3600864-3600944 1.0000 80 chrIII:8628519-8628599 1.0000 80 chrV:14734514-14734594 1.0000 80 chrIV:13083506-13083586 1.0000 80 chrIII:13563082-13563162 1.0000 80 chrIII:7074134-7074214 1.0000 80 chrI:14104704-14104784 1.0000 80 chrX:7955382-7955462 1.0000 80 chrV:6220874-6220954 1.0000 80 chrX:1443982-1444062 1.0000 80 chrIV:4357445-4357525 1.0000 80 chrIV:7632665-7632745 1.0000 80 chrM:13130-13210 1.0000 80 chrI:1050704-1050784 1.0000 80 chrIII:6710168-6710248 1.0000 80 chrIII:12152306-12152386 1.0000 80 chrI:7660587-7660667 1.0000 80 chrV:5939671-5939751 1.0000 80 chrIV:8741154-8741234 1.0000 80 chrII:5506071-5506151 1.0000 80 chrV:15597-15677 1.0000 80 chrV:16499153-16499233 1.0000 80 chrIV:7396786-7396866 1.0000 80 chrII:5501451-5501531 1.0000 80 chrI:12920657-12920737 1.0000 80 chrIII:5946125-5946205 1.0000 80 chrIII:6123850-6123930 1.0000 80 chrII:6889500-6889580 1.0000 80 chrI:12183272-12183352 1.0000 80 chrIII:4153120-4153200 1.0000 80 chrIII:6615223-6615303 1.0000 80 chrX:11604656-11604736 1.0000 80 chrI:10622880-10622960 1.0000 80 chrI:9581584-9581664 1.0000 80 chrI:10565991-10566071 1.0000 80 chrX:4208683-4208763 1.0000 80 chrIV:5188222-5188302 1.0000 80 chrIV:2890713-2890793 1.0000 80 chrIV:1459475-1459555 1.0000 80 chrIV:11142598-11142678 1.0000 80 chrIII:491251-491331 1.0000 80 chrIV:9212022-9212102 1.0000 80 chrII:8276260-8276340 1.0000 80 chrV:4339687-4339767 1.0000 80 chrI:4829913-4829993 1.0000 80 chrI:3825944-3826024 1.0000 80 chrIII:4058031-4058111 1.0000 80 chrM:6621-6701 1.0000 80 chrV:965027-965107 1.0000 80 chrIII:9912696-9912776 1.0000 80 chrV:12816480-12816560 1.0000 80 chrV:15578521-15578601 1.0000 80 chrII:7987034-7987114 1.0000 80 chrV:6223846-6223926 1.0000 80 chrII:9597993-9598073 1.0000 80 chrIII:10905308-10905388 1.0000 80 chrIV:6555881-6555961 1.0000 80 chrIII:13278282-13278362 1.0000 80 chrIII:10093250-10093330 1.0000 80 chrV:15184595-15184675 1.0000 80 chrV:14355128-14355208 1.0000 80 chrX:15983407-15983487 1.0000 80 chrI:4765565-4765645 1.0000 80 chrX:10004670-10004750 1.0000 80 chrI:7081223-7081303 1.0000 80 chrII:9706398-9706478 1.0000 80 chrX:14164910-14164990 1.0000 80 chrX:4148205-4148285 1.0000 80 chrIV:7505669-7505749 1.0000 80 chrIV:8511235-8511315 1.0000 80 chrIII:62535-62615 1.0000 80 chrIV:10242889-10242969 1.0000 80 chrI:10591688-10591768 1.0000 80 chrV:5275783-5275863 1.0000 80 chrV:20717277-20717357 1.0000 80 chrV:6043429-6043509 1.0000 80 chrIII:6417930-6418010 1.0000 80 chrV:7431390-7431470 1.0000 80 chrIII:3866873-3866953 1.0000 80 chrIII:8975859-8975939 1.0000 80 chrII:5575071-5575151 1.0000 80 chrV:11631175-11631255 1.0000 80 chrIV:874836-874916 1.0000 80 chrIV:9438624-9438704 1.0000 80 chrV:12970754-12970834 1.0000 80 chrI:3292693-3292773 1.0000 80 chrIII:8809690-8809770 1.0000 80 chrIII:10325465-10325545 1.0000 80 chrIV:6958855-6958935 1.0000 80 chrV:11503510-11503590 1.0000 80 chrV:10953933-10954013 1.0000 80 chrI:7945541-7945621 1.0000 80 chrIV:3873401-3873481 1.0000 80 chrI:3866591-3866671 1.0000 80 chrV:724765-724845 1.0000 80 chrI:5811883-5811963 1.0000 80 chrM:8749-8829 1.0000 80 chrIII:7795452-7795532 1.0000 80 chrV:13088718-13088798 1.0000 80 chrI:9047941-9048021 1.0000 80 chrV:12460823-12460903 1.0000 80 chrV:12063172-12063252 1.0000 80 chrV:10031534-10031614 1.0000 80 chrIII:12534060-12534140 1.0000 80 chrII:2204246-2204326 1.0000 80 chrX:14819997-14820077 1.0000 80 chrV:13312443-13312523 1.0000 80 chrI:519957-520037 1.0000 80 chrV:1018786-1018866 1.0000 80 chrII:6967834-6967914 1.0000 80 chrV:11535912-11535992 1.0000 80 chrV:6949-7029 1.0000 80 chrIV:14790701-14790781 1.0000 80 chrIV:9777697-9777777 1.0000 80 chrII:6536068-6536148 1.0000 80 chrX:1012866-1012946 1.0000 80 chrII:15208330-15208410 1.0000 80 chrIV:12130938-12131018 1.0000 80 chrI:534294-534374 1.0000 80 chrIV:7903520-7903600 1.0000 80 chrV:12184488-12184568 1.0000 80 chrII:10350633-10350713 1.0000 80 chrII:7781273-7781353 1.0000 80 chrII:6974145-6974225 1.0000 80 chrII:11039064-11039144 1.0000 80 chrV:9327290-9327370 1.0000 80 chrII:10450622-10450702 1.0000 80 chrV:9547815-9547895 1.0000 80 chrIV:9386155-9386235 1.0000 80 chrX:3128453-3128533 1.0000 80 chrI:14101172-14101252 1.0000 80 chrX:423076-423156 1.0000 80 chrX:15604692-15604772 1.0000 80 chrX:12168897-12168977 1.0000 80 chrII:9242987-9243067 1.0000 80 chrX:5976679-5976759 1.0000 80 chrIII:3790997-3791077 1.0000 80 chrII:8457594-8457674 1.0000 80 chrII:9169623-9169703 1.0000 80 chrIV:6548766-6548846 1.0000 80 chrIV:5731759-5731839 1.0000 80 chrII:11022163-11022243 1.0000 80 chrV:20781186-20781266 1.0000 80 chrIII:4658513-4658593 1.0000 80 chrII:7773176-7773256 1.0000 80 chrV:13664510-13664590 1.0000 80 chrI:5274306-5274386 1.0000 80 chrI:8839271-8839351 1.0000 80 chrV:8219-8299 1.0000 80 chrV:14523042-14523122 1.0000 80 chrII:386133-386213 1.0000 80 chrX:6251021-6251101 1.0000 80 chrIV:1309963-1310043 1.0000 80 chrII:7631662-7631742 1.0000 80 chrV:725980-726060 1.0000 80 chrV:20790965-20791045 1.0000 80 chrV:15569959-15570039 1.0000 80 chrV:17169-17249 1.0000 80 chrIV:8790542-8790622 1.0000 80 chrV:15059729-15059809 1.0000 80 chrX:5519509-5519589 1.0000 80 chrII:7147733-7147813 1.0000 80 chrIII:20143-20223 1.0000 80 chrIV:3526653-3526733 1.0000 80 chrIII:902135-902215 1.0000 80 chrII:14035289-14035369 1.0000 80 chrIII:4489068-4489148 1.0000 80 chrV:10954324-10954404 1.0000 80 chrX:15608820-15608900 1.0000 80 chrIV:9319079-9319159 1.0000 80 chrV:8031295-8031375 1.0000 80 chrII:7776188-7776268 1.0000 80 chrIV:3213574-3213654 1.0000 80 chrX:7790991-7791071 1.0000 80 chrV:4516412-4516492 1.0000 80 chrIV:261767-261847 1.0000 80 chrIV:2670831-2670911 1.0000 80 chrIII:13439579-13439659 1.0000 80 chrII:9108610-9108690 1.0000 80 chrII:9285691-9285771 1.0000 80 chrIII:10210642-10210722 1.0000 80 chrIII:10615231-10615311 1.0000 80 chrIII:5448332-5448412 1.0000 80 chrX:15546412-15546492 1.0000 80 chrI:4242538-4242618 1.0000 80 chrI:10173244-10173324 1.0000 80 chrIII:5719954-5720034 1.0000 80 chrIII:6442702-6442782 1.0000 80 chrV:11890035-11890115 1.0000 80 chrV:13654021-13654101 1.0000 80 chrM:422-502 1.0000 80 chrV:13256642-13256722 1.0000 80 chrX:1504345-1504425 1.0000 80 chrIII:2151613-2151693 1.0000 80 chrI:12552893-12552973 1.0000 80 chrIII:4593480-4593560 1.0000 80 chrI:5134182-5134262 1.0000 80 chrV:11925062-11925142 1.0000 80 chrIII:357720-357800 1.0000 80 chrV:12330636-12330716 1.0000 80 chrI:15035905-15035985 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_lin-35/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/lin-35.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.297 C 0.203 G 0.197 T 0.303 Background letter frequencies (from file dataset with add-one prior applied): A 0.297 C 0.203 G 0.197 T 0.303 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SGCGCGCV MEME-1 width = 8 sites = 67 llr = 527 E-value = 8.6e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGCGCGCV MEME-1 Description -------------------------------------------------------------------------------- Simplified A :33::::2 pos.-specific C 517:a1a4 probability G 36:a:6:4 matrix T 1::::3:: bits 2.3 ** * 2.1 ** * 1.9 ** * 1.6 ** * Relative 1.4 ** * Entropy 1.2 *** * (11.4 bits) 0.9 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCGCC consensus GAA T G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCGCV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:8839271-8839351 11 5.19e-06 ctcttcctgg cgcgcgcg cgctctctct chrI:519957-520037 46 5.19e-06 ACAACGTTCG CGCGCGCG CCGAAGTACG chrI:15035905-15035985 58 1.02e-05 CGAAATAACG GGCGCGCG TGTTGTTTAG chrV:18086927-18087007 26 1.41e-05 ATTCGAATTT CGCGCGCA TTTCACCGTt chrI:1183970-1184050 7 1.41e-05 caaatg cgcgcgca taaaaagttc chrII:15208330-15208410 20 2.19e-05 AAATTTTGAA CACGCGCC GGCGTTCGGT chrV:6043429-6043509 32 2.19e-05 CGAATTTGAA CACGCGCC AATTTGAGGT chrI:10591688-10591768 37 2.19e-05 GAGAGGAGTA CACGCGCG AGTGCACTGG chrII:8276260-8276340 9 2.19e-05 ATTTAAAT CACGCGCC CTTTTTTTCG chrIV:11142598-11142678 65 2.19e-05 GGTCAAATTT CACGCGCG AAATTTAA chrV:6593851-6593931 68 2.19e-05 TTTGAATCAC CACGCGCG GGAAT chrIV:8869799-8869879 13 2.19e-05 AGATAAACAG CACGCGCC CGCGTTAAAG chrIII:5448332-5448412 69 4.12e-05 GCAATGCAAA CGCGCTCC ACCG chrIV:3213574-3213654 26 4.12e-05 CCATTGCAAA CGCGCTCC GTTGGCAATC chrV:15059729-15059809 12 4.12e-05 CAAGGTTTCG CGCGCTCG CTCCGTAAAC chrII:11022163-11022243 52 4.12e-05 GAAATGCAAC CGCGCTCC ACTGGACAAT chrIV:6548766-6548846 31 4.12e-05 GATAGCATCT CGCGCTCC ATTGCTACGC chrIII:1208011-1208091 16 4.12e-05 ATAATGCAAG CGCGCTCC ACTGTACAAT chrIII:1533258-1533338 14 4.12e-05 CCAATGCAAA CGCGCTCC ATTGAGAAAT chrI:13161915-13161995 37 4.12e-05 TGAAAGCAAC CGCGCTCC ATTGAACAAC chrIII:11565755-11565835 33 4.12e-05 TTCAAACTCC CGCGCTCG ACTATTATCG chrI:4765565-4765645 28 4.88e-05 ATTAAATGCA GACGCGCC CCAATGCACA chrX:5976679-5976759 12 7.71e-05 AATGGCTGCG GGCGCTCG ATGCTCGATG chrI:3866591-3866671 34 7.71e-05 CGTGGTGAGA CCCGCGCC CCCGCGCAAA chrIII:8809690-8809770 48 7.71e-05 TTTTATCTAC GGAGCGCG CTTGCGACAG chrIV:8511235-8511315 44 7.71e-05 GAACGAGAAA TGCGCGCG AGCGGCCATA chrI:4829913-4829993 35 7.71e-05 CTTTCTCAAA GGAGCGCG GTGACATACA chrIII:491251-491331 55 7.71e-05 ACGTGCcggt ggagcgcg cttgcatttt chrIII:6710168-6710248 57 7.71e-05 AACTAATAAA TGCGCGCG AATTTTAAAA chrV:5596523-5596603 44 7.71e-05 CAACTTCGAT GGAGCGCG GTTGCATGCC chrI:1895100-1895180 43 7.71e-05 GGAGTGTCGT TGCGCGCC GTAAATCCAC chrIII:12377431-12377511 19 7.71e-05 GATGTTCAAT GGAGCGCG TTTGCCTAGC chrI:14560307-14560387 72 7.71e-05 AAACACCTTC TGCGCGCG C chrIV:261767-261847 24 8.24e-05 TTAATGCAAA CGCGCCCC ATTGCAAATC chrI:3600864-3600944 24 8.24e-05 GGGAGGAAAA CGCGCCCC ATCGCACTTT chrIII:12278915-12278995 50 8.24e-05 atgaagcaag cgcgcccc aatgtgaatt chrIV:1309963-1310043 35 8.76e-05 CCGAAATCCC GCCGCGCG TGTTGTTTAG chrX:3128453-3128533 27 8.76e-05 GAAACGGGGA GCCGCGCC AAATCTGTCA chrV:12184488-12184568 4 9.34e-05 CTA CACGCGCA TCGTTATATC chrII:6536068-6536148 48 1.10e-04 TTTCAAACCA CGCGCTCA CTTATTTTCT chrI:10565991-10566071 41 1.16e-04 CAGACACCGC GACGCGCA CGCCGCGAAT chrII:13083891-13083971 24 1.39e-04 AAATTTGAAA CAAGCGCC AAAAAGTGGC chrIII:2151613-2151693 36 1.60e-04 AATTCAAACA CCCGCGCA AATGAGGTAC chrII:7147733-7147813 39 1.60e-04 AATTAGCCAT GGAGCGCA CTTGAAAATC chrIV:9386155-9386235 72 1.60e-04 AAAGTGCAAC GGAGCGCA C chrIII:6615223-6615303 33 1.60e-04 GTTTGTCAAC GGAGCGCA TTTGCATTTC chrIV:4357445-4357525 45 1.60e-04 gatgtgcgat ggagcgca cttgccaaat chrV:14734514-14734594 31 1.60e-04 GGTGTGCGGT GGAGCGCA ATTACATTAA chrII:4828218-4828298 31 1.60e-04 AATTTGAACA CCCGCGCA TTTTTGTGTC chrIII:2805253-2805333 18 1.60e-04 ATTTGAAACA CCCGCGCA TTAATTTTCT chrIV:1177853-1177933 14 1.60e-04 GGTTTGAACT CCCGCGCA TTTGAATTAA chrV:10953933-10954013 43 1.72e-04 CGACTTCCGA CGAGCTCC GACCCACATG chrIV:5731759-5731839 3 2.10e-04 AC GACGCTCC GAGATTACGA chrV:9547815-9547895 29 2.10e-04 GCTAGCTGGA GACGCTCC TGAATTTTTC chrV:965027-965107 59 2.10e-04 ACAAACCAAA CGCGCCCA TTGGACAAAA chrIII:7074134-7074214 47 2.10e-04 GAGAACCATT TACGCGCG AAGTTTGAAT chrV:5204329-5204409 30 2.10e-04 AAATTTGAAT TACGCGCG TATATCAGTG chrI:4242538-4242618 39 2.73e-04 atttagcggt tgagcgcg attgcacctt chrI:3292693-3292773 36 2.73e-04 TTGACCAGGC GGAGCTCG AGCAACGACA chrV:13312443-13312523 72 3.16e-04 AGGGAAAGTG GCAGCGCC T chrV:8219-8299 72 3.55e-04 TCTGCGGAAT TGCGCCCC C chrIII:10325465-10325545 11 3.55e-04 AAGAAATATT GGAGCCCG AAGGCAGCAG chrX:7790991-7791071 72 4.20e-04 AATAGAGAAA CAAGCTCC G chrV:13664510-13664590 73 4.20e-04 TTGAGATTAT AGCGCGCG chrIII:4058031-4058111 57 5.21e-04 ATGTGGCAAG TACGCTCC GTCGCACTTT chrII:6889500-6889580 15 5.21e-04 TTACGTTGAT GAAGCTCG AATCCGTCAG chrX:6251021-6251101 51 6.01e-04 TCACTAAAAT GGAGCCCA CCCTCACAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCGCV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8839271-8839351 5.2e-06 10_[+1]_62 chrI:519957-520037 5.2e-06 45_[+1]_27 chrI:15035905-15035985 1e-05 57_[+1]_15 chrV:18086927-18087007 1.4e-05 25_[+1]_47 chrI:1183970-1184050 1.4e-05 6_[+1]_66 chrII:15208330-15208410 2.2e-05 19_[+1]_53 chrV:6043429-6043509 2.2e-05 31_[+1]_41 chrI:10591688-10591768 2.2e-05 36_[+1]_36 chrII:8276260-8276340 2.2e-05 8_[+1]_64 chrIV:11142598-11142678 2.2e-05 64_[+1]_8 chrV:6593851-6593931 2.2e-05 67_[+1]_5 chrIV:8869799-8869879 2.2e-05 12_[+1]_60 chrIII:5448332-5448412 4.1e-05 68_[+1]_4 chrIV:3213574-3213654 4.1e-05 25_[+1]_47 chrV:15059729-15059809 4.1e-05 11_[+1]_61 chrII:11022163-11022243 4.1e-05 51_[+1]_21 chrIV:6548766-6548846 4.1e-05 30_[+1]_42 chrIII:1208011-1208091 4.1e-05 15_[+1]_57 chrIII:1533258-1533338 4.1e-05 13_[+1]_59 chrI:13161915-13161995 4.1e-05 36_[+1]_36 chrIII:11565755-11565835 4.1e-05 32_[+1]_40 chrI:4765565-4765645 4.9e-05 27_[+1]_45 chrX:5976679-5976759 7.7e-05 11_[+1]_61 chrI:3866591-3866671 7.7e-05 33_[+1]_39 chrIII:8809690-8809770 7.7e-05 47_[+1]_25 chrIV:8511235-8511315 7.7e-05 43_[+1]_29 chrI:4829913-4829993 7.7e-05 34_[+1]_38 chrIII:491251-491331 7.7e-05 54_[+1]_18 chrIII:6710168-6710248 7.7e-05 56_[+1]_16 chrV:5596523-5596603 7.7e-05 43_[+1]_29 chrI:1895100-1895180 7.7e-05 42_[+1]_30 chrIII:12377431-12377511 7.7e-05 18_[+1]_54 chrI:14560307-14560387 7.7e-05 71_[+1]_1 chrIV:261767-261847 8.2e-05 23_[+1]_49 chrI:3600864-3600944 8.2e-05 23_[+1]_49 chrIII:12278915-12278995 8.2e-05 49_[+1]_23 chrIV:1309963-1310043 8.8e-05 34_[+1]_38 chrX:3128453-3128533 8.8e-05 26_[+1]_46 chrV:12184488-12184568 9.3e-05 3_[+1]_69 chrII:6536068-6536148 0.00011 47_[+1]_25 chrI:10565991-10566071 0.00012 40_[+1]_32 chrII:13083891-13083971 0.00014 23_[+1]_49 chrIII:2151613-2151693 0.00016 35_[+1]_37 chrII:7147733-7147813 0.00016 38_[+1]_34 chrIV:9386155-9386235 0.00016 71_[+1]_1 chrIII:6615223-6615303 0.00016 32_[+1]_40 chrIV:4357445-4357525 0.00016 44_[+1]_28 chrV:14734514-14734594 0.00016 30_[+1]_42 chrII:4828218-4828298 0.00016 30_[+1]_42 chrIII:2805253-2805333 0.00016 17_[+1]_55 chrIV:1177853-1177933 0.00016 13_[+1]_59 chrV:10953933-10954013 0.00017 42_[+1]_30 chrIV:5731759-5731839 0.00021 2_[+1]_70 chrV:9547815-9547895 0.00021 28_[+1]_44 chrV:965027-965107 0.00021 58_[+1]_14 chrIII:7074134-7074214 0.00021 46_[+1]_26 chrV:5204329-5204409 0.00021 29_[+1]_43 chrI:4242538-4242618 0.00027 38_[+1]_34 chrI:3292693-3292773 0.00027 35_[+1]_37 chrV:13312443-13312523 0.00032 71_[+1]_1 chrV:8219-8299 0.00035 71_[+1]_1 chrIII:10325465-10325545 0.00035 10_[+1]_62 chrX:7790991-7791071 0.00042 71_[+1]_1 chrV:13664510-13664590 0.00042 72_[+1] chrIII:4058031-4058111 0.00052 56_[+1]_16 chrII:6889500-6889580 0.00052 14_[+1]_58 chrX:6251021-6251101 0.0006 50_[+1]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCGCV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGCGCGCV width=8 seqs=67 chrI:8839271-8839351 ( 11) CGCGCGCG 1 chrI:519957-520037 ( 46) CGCGCGCG 1 chrI:15035905-15035985 ( 58) GGCGCGCG 1 chrV:18086927-18087007 ( 26) CGCGCGCA 1 chrI:1183970-1184050 ( 7) CGCGCGCA 1 chrII:15208330-15208410 ( 20) CACGCGCC 1 chrV:6043429-6043509 ( 32) CACGCGCC 1 chrI:10591688-10591768 ( 37) CACGCGCG 1 chrII:8276260-8276340 ( 9) CACGCGCC 1 chrIV:11142598-11142678 ( 65) CACGCGCG 1 chrV:6593851-6593931 ( 68) CACGCGCG 1 chrIV:8869799-8869879 ( 13) CACGCGCC 1 chrIII:5448332-5448412 ( 69) CGCGCTCC 1 chrIV:3213574-3213654 ( 26) CGCGCTCC 1 chrV:15059729-15059809 ( 12) CGCGCTCG 1 chrII:11022163-11022243 ( 52) CGCGCTCC 1 chrIV:6548766-6548846 ( 31) CGCGCTCC 1 chrIII:1208011-1208091 ( 16) CGCGCTCC 1 chrIII:1533258-1533338 ( 14) CGCGCTCC 1 chrI:13161915-13161995 ( 37) CGCGCTCC 1 chrIII:11565755-11565835 ( 33) CGCGCTCG 1 chrI:4765565-4765645 ( 28) GACGCGCC 1 chrX:5976679-5976759 ( 12) GGCGCTCG 1 chrI:3866591-3866671 ( 34) CCCGCGCC 1 chrIII:8809690-8809770 ( 48) GGAGCGCG 1 chrIV:8511235-8511315 ( 44) TGCGCGCG 1 chrI:4829913-4829993 ( 35) GGAGCGCG 1 chrIII:491251-491331 ( 55) GGAGCGCG 1 chrIII:6710168-6710248 ( 57) TGCGCGCG 1 chrV:5596523-5596603 ( 44) GGAGCGCG 1 chrI:1895100-1895180 ( 43) TGCGCGCC 1 chrIII:12377431-12377511 ( 19) GGAGCGCG 1 chrI:14560307-14560387 ( 72) TGCGCGCG 1 chrIV:261767-261847 ( 24) CGCGCCCC 1 chrI:3600864-3600944 ( 24) CGCGCCCC 1 chrIII:12278915-12278995 ( 50) CGCGCCCC 1 chrIV:1309963-1310043 ( 35) GCCGCGCG 1 chrX:3128453-3128533 ( 27) GCCGCGCC 1 chrV:12184488-12184568 ( 4) CACGCGCA 1 chrII:6536068-6536148 ( 48) CGCGCTCA 1 chrI:10565991-10566071 ( 41) GACGCGCA 1 chrII:13083891-13083971 ( 24) CAAGCGCC 1 chrIII:2151613-2151693 ( 36) CCCGCGCA 1 chrII:7147733-7147813 ( 39) GGAGCGCA 1 chrIV:9386155-9386235 ( 72) GGAGCGCA 1 chrIII:6615223-6615303 ( 33) GGAGCGCA 1 chrIV:4357445-4357525 ( 45) GGAGCGCA 1 chrV:14734514-14734594 ( 31) GGAGCGCA 1 chrII:4828218-4828298 ( 31) CCCGCGCA 1 chrIII:2805253-2805333 ( 18) CCCGCGCA 1 chrIV:1177853-1177933 ( 14) CCCGCGCA 1 chrV:10953933-10954013 ( 43) CGAGCTCC 1 chrIV:5731759-5731839 ( 3) GACGCTCC 1 chrV:9547815-9547895 ( 29) GACGCTCC 1 chrV:965027-965107 ( 59) CGCGCCCA 1 chrIII:7074134-7074214 ( 47) TACGCGCG 1 chrV:5204329-5204409 ( 30) TACGCGCG 1 chrI:4242538-4242618 ( 39) TGAGCGCG 1 chrI:3292693-3292773 ( 36) GGAGCTCG 1 chrV:13312443-13312523 ( 72) GCAGCGCC 1 chrV:8219-8299 ( 72) TGCGCCCC 1 chrIII:10325465-10325545 ( 11) GGAGCCCG 1 chrX:7790991-7791071 ( 72) CAAGCTCC 1 chrV:13664510-13664590 ( 73) AGCGCGCG 1 chrIII:4058031-4058111 ( 57) TACGCTCC 1 chrII:6889500-6889580 ( 15) GAAGCTCG 1 chrX:6251021-6251101 ( 51) GGAGCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCGCV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.84661 E= 8.6e-023 -431 132 80 -117 -14 -76 163 -1271 -7 182 -1271 -1271 -1271 -1271 234 -1271 -1271 230 -1271 -1271 -1271 -96 167 -17 -1271 230 -1271 -1271 -31 94 92 -1271 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCGCV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 67 E= 8.6e-023 0.014925 0.507463 0.343284 0.134328 0.268657 0.119403 0.611940 0.000000 0.283582 0.716418 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.104478 0.626866 0.268657 0.000000 1.000000 0.000000 0.000000 0.238806 0.388060 0.373134 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCGCV MEME-1 regular expression -------------------------------------------------------------------------------- [CG][GA][CA]GC[GT]C[CGA] -------------------------------------------------------------------------------- Time 5.11 secs. ******************************************************************************** ******************************************************************************** MOTIF AATTYRAA MEME-2 width = 8 sites = 52 llr = 412 E-value = 1.2e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATTYRAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A a7:::5aa pos.-specific C ::::4::: probability G :::::5:: matrix T :3aa6::: bits 2.3 2.1 1.9 1.6 * ** ** Relative 1.4 * ** ** Entropy 1.2 * ** ** (11.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AATTTAAA consensus T CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTYRAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:15035905-15035985 19 4.26e-05 ATAAACTCGA AATTTGAA AAATTGCCAA chrIII:13439579-13439659 64 4.26e-05 CGAAAATTTA AATTTGAA TAATTTTTT chrIV:2670831-2670911 58 4.26e-05 TTTCCGCGGG AATTTGAA TTTTAACACT chrIII:20143-20223 60 4.26e-05 TTTTTTTACG AATTTGAA AAAATTGAAA chrIII:12534060-12534140 6 4.26e-05 aattc aatttgaa cctaccgcca chrV:6043429-6043509 24 4.26e-05 CAAAAACTCG AATTTGAA CACGCGCCAA chrIV:8511235-8511315 29 4.26e-05 CCACTAATGC AATTTGAA CGAGAAATGC chrIV:1459475-1459555 2 4.26e-05 C AATTTGAA ATTTGAAATT chrIII:6615223-6615303 1 4.26e-05 . AATTTGAA CGTCCCGCGT chrIII:12152306-12152386 3 4.26e-05 TC AATTTGAA CTTCCCGCTA chrV:5204329-5204409 21 4.26e-05 AAAAAAACTA AATTTGAA TTACGCGCGT chrIII:1208011-1208091 61 4.26e-05 GCGGAATTCG AATTTGAA TGGGTTTTTC chrII:4828218-4828298 21 4.26e-05 AAAAAAATAA AATTTGAA CACCCGCGCA chrV:10476787-10476867 20 4.26e-05 TAATTGTAAT AATTTGAA TATAATTTCC chrIII:2805253-2805333 7 4.26e-05 AAACTA AATTTGAA ACACCCGCGC chrII:13083891-13083971 15 4.26e-05 TAAAAAACTA AATTTGAA ACAAGCGCCA chrIII:2151613-2151693 20 7.12e-05 aAATGGAGAA AATTCGAA TTCAAACACC chrV:15578521-15578601 62 7.12e-05 TTTAGCGGTT AATTCGAA TATTAAACCT chrV:18086927-18087007 15 7.12e-05 TTTTTCTTCC AATTCGAA TTTCGCGCGC chrI:5134182-5134262 13 1.35e-04 CCACATTAAA AATTTAAA AGAAAACCAA chrIII:902135-902215 46 1.35e-04 AAACCTAGGT AATTTAAA AATCTTACGA chrI:534294-534374 58 1.35e-04 CCTCGGCGGG AATTTAAA GAGAAATGGC chrIII:8975859-8975939 15 1.35e-04 AAAACAAAGT AATTTAAA AGAATAAATT chrV:6223846-6223926 43 1.35e-04 ggagtttgag aatttAAA AAAGAGAGTT chrI:12183272-12183352 35 1.35e-04 AAAGAGAGGG AATTTAAA TATAGTTGTT chrI:5274306-5274386 19 1.79e-04 TTATTTACGA AATTCAAA AAATGGCGGC chrII:10450622-10450702 11 1.79e-04 CTCTGTTGAA AATTCAAA AGAAATGGGA chrII:10350633-10350713 62 1.79e-04 TTTGGAGCGA AATTCAAA TCTTGATATT chrIV:12130938-12131018 42 1.79e-04 CTATTTTCAA AATTCAAA AGAAAACGAG chrI:519957-520037 25 1.79e-04 CGACGACTAA AATTCAAA TGCACAACGT chrIII:10093250-10093330 66 1.79e-04 TTTGCGAGGC AATTCAAA AATGATT chrI:9581584-9581664 31 1.79e-04 AAAGATTGCA AATTCAAA CTGCCACGGA chrI:6038173-6038253 13 1.79e-04 TTAAACCCTC AATTCAAA TTTCGCGCTC chrIII:7952248-7952328 72 1.79e-04 AACTAGCGCG AATTCAAA A chrIII:12377431-12377511 51 1.79e-04 TTTTCGCGGC AATTCAAA TTAGAATTTT chrIII:5719954-5720034 8 2.22e-04 CTAAAGA ATTTTGAA TTGCCTCCAA chrX:15604692-15604772 18 2.22e-04 AAAAAAATAA ATTTTGAA AAAGTTTTCT chrII:15208330-15208410 12 2.22e-04 AAAAAATCAA ATTTTGAA CACGCGCCGG chrI:3866591-3866671 54 2.22e-04 CGCGCAAAAA ATTTTGAA CTTTTGCGGA chrV:6593851-6593931 56 2.22e-04 GAAGGTTTCA ATTTTGAA TCACCACGCG chrII:5501451-5501531 42 2.51e-04 ACTGGCGGCA ATTTCGAA CGTGCATGCC chrI:5811883-5811963 73 3.17e-04 ATAAAAAAGA ATTTTAAA chrIV:874836-874916 13 3.17e-04 CAAAAAACTA ATTTTAAA CTCCCGCCGT chrX:15983407-15983487 3 3.17e-04 TT ATTTTAAA AATGTATTAC chrIII:6710168-6710248 66 3.17e-04 ATGCGCGCGA ATTTTAAA AATAGAT chrV:13664510-13664590 53 3.61e-04 TTATTGGCGC ATTTCAAA ATTTGAGATT chrII:7781273-7781353 61 3.61e-04 TATTCAACGC ATTTCAAA ATGAGTTGCG chrII:6536068-6536148 37 3.61e-04 CGGAAATTAC ATTTCAAA CCACGCGCTC chrV:5939671-5939751 8 3.61e-04 CTTTTCT ATTTCAAA TTCCCTCTAA chrIII:11565755-11565835 21 3.61e-04 CAAAACCCCC ATTTCAAA CTCCCGCGCT chrII:9597993-9598073 47 4.05e-04 TGTGATTATG AATTTCAA TCGATTGACT chrIII:4654175-4654255 14 4.34e-04 TCCTCCTTGA AATTCCAA GAAAGGCGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTYRAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:15035905-15035985 4.3e-05 18_[+2]_54 chrIII:13439579-13439659 4.3e-05 63_[+2]_9 chrIV:2670831-2670911 4.3e-05 57_[+2]_15 chrIII:20143-20223 4.3e-05 59_[+2]_13 chrIII:12534060-12534140 4.3e-05 5_[+2]_67 chrV:6043429-6043509 4.3e-05 23_[+2]_49 chrIV:8511235-8511315 4.3e-05 28_[+2]_44 chrIV:1459475-1459555 4.3e-05 1_[+2]_71 chrIII:6615223-6615303 4.3e-05 [+2]_72 chrIII:12152306-12152386 4.3e-05 2_[+2]_70 chrV:5204329-5204409 4.3e-05 20_[+2]_52 chrIII:1208011-1208091 4.3e-05 60_[+2]_12 chrII:4828218-4828298 4.3e-05 20_[+2]_52 chrV:10476787-10476867 4.3e-05 19_[+2]_53 chrIII:2805253-2805333 4.3e-05 6_[+2]_66 chrII:13083891-13083971 4.3e-05 14_[+2]_58 chrIII:2151613-2151693 7.1e-05 19_[+2]_53 chrV:15578521-15578601 7.1e-05 61_[+2]_11 chrV:18086927-18087007 7.1e-05 14_[+2]_58 chrI:5134182-5134262 0.00014 12_[+2]_60 chrIII:902135-902215 0.00014 45_[+2]_27 chrI:534294-534374 0.00014 57_[+2]_15 chrIII:8975859-8975939 0.00014 14_[+2]_58 chrV:6223846-6223926 0.00014 42_[+2]_30 chrI:12183272-12183352 0.00014 34_[+2]_38 chrI:5274306-5274386 0.00018 18_[+2]_54 chrII:10450622-10450702 0.00018 10_[+2]_62 chrII:10350633-10350713 0.00018 61_[+2]_11 chrIV:12130938-12131018 0.00018 41_[+2]_31 chrI:519957-520037 0.00018 24_[+2]_48 chrIII:10093250-10093330 0.00018 65_[+2]_7 chrI:9581584-9581664 0.00018 30_[+2]_42 chrI:6038173-6038253 0.00018 12_[+2]_60 chrIII:7952248-7952328 0.00018 71_[+2]_1 chrIII:12377431-12377511 0.00018 50_[+2]_22 chrIII:5719954-5720034 0.00022 7_[+2]_65 chrX:15604692-15604772 0.00022 17_[+2]_55 chrII:15208330-15208410 0.00022 11_[+2]_61 chrI:3866591-3866671 0.00022 53_[+2]_19 chrV:6593851-6593931 0.00022 55_[+2]_17 chrII:5501451-5501531 0.00025 41_[+2]_31 chrI:5811883-5811963 0.00032 72_[+2] chrIV:874836-874916 0.00032 12_[+2]_60 chrX:15983407-15983487 0.00032 2_[+2]_70 chrIII:6710168-6710248 0.00032 65_[+2]_7 chrV:13664510-13664590 0.00036 52_[+2]_20 chrII:7781273-7781353 0.00036 60_[+2]_12 chrII:6536068-6536148 0.00036 36_[+2]_36 chrV:5939671-5939751 0.00036 7_[+2]_65 chrIII:11565755-11565835 0.00036 20_[+2]_52 chrII:9597993-9598073 0.0004 46_[+2]_26 chrIII:4654175-4654255 0.00043 13_[+2]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTYRAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATTYRAA width=8 seqs=52 chrI:15035905-15035985 ( 19) AATTTGAA 1 chrIII:13439579-13439659 ( 64) AATTTGAA 1 chrIV:2670831-2670911 ( 58) AATTTGAA 1 chrIII:20143-20223 ( 60) AATTTGAA 1 chrIII:12534060-12534140 ( 6) AATTTGAA 1 chrV:6043429-6043509 ( 24) AATTTGAA 1 chrIV:8511235-8511315 ( 29) AATTTGAA 1 chrIV:1459475-1459555 ( 2) AATTTGAA 1 chrIII:6615223-6615303 ( 1) AATTTGAA 1 chrIII:12152306-12152386 ( 3) AATTTGAA 1 chrV:5204329-5204409 ( 21) AATTTGAA 1 chrIII:1208011-1208091 ( 61) AATTTGAA 1 chrII:4828218-4828298 ( 21) AATTTGAA 1 chrV:10476787-10476867 ( 20) AATTTGAA 1 chrIII:2805253-2805333 ( 7) AATTTGAA 1 chrII:13083891-13083971 ( 15) AATTTGAA 1 chrIII:2151613-2151693 ( 20) AATTCGAA 1 chrV:15578521-15578601 ( 62) AATTCGAA 1 chrV:18086927-18087007 ( 15) AATTCGAA 1 chrI:5134182-5134262 ( 13) AATTTAAA 1 chrIII:902135-902215 ( 46) AATTTAAA 1 chrI:534294-534374 ( 58) AATTTAAA 1 chrIII:8975859-8975939 ( 15) AATTTAAA 1 chrV:6223846-6223926 ( 43) AATTTAAA 1 chrI:12183272-12183352 ( 35) AATTTAAA 1 chrI:5274306-5274386 ( 19) AATTCAAA 1 chrII:10450622-10450702 ( 11) AATTCAAA 1 chrII:10350633-10350713 ( 62) AATTCAAA 1 chrIV:12130938-12131018 ( 42) AATTCAAA 1 chrI:519957-520037 ( 25) AATTCAAA 1 chrIII:10093250-10093330 ( 66) AATTCAAA 1 chrI:9581584-9581664 ( 31) AATTCAAA 1 chrI:6038173-6038253 ( 13) AATTCAAA 1 chrIII:7952248-7952328 ( 72) AATTCAAA 1 chrIII:12377431-12377511 ( 51) AATTCAAA 1 chrIII:5719954-5720034 ( 8) ATTTTGAA 1 chrX:15604692-15604772 ( 18) ATTTTGAA 1 chrII:15208330-15208410 ( 12) ATTTTGAA 1 chrI:3866591-3866671 ( 54) ATTTTGAA 1 chrV:6593851-6593931 ( 56) ATTTTGAA 1 chrII:5501451-5501531 ( 42) ATTTCGAA 1 chrI:5811883-5811963 ( 73) ATTTTAAA 1 chrIV:874836-874916 ( 13) ATTTTAAA 1 chrX:15983407-15983487 ( 3) ATTTTAAA 1 chrIII:6710168-6710248 ( 66) ATTTTAAA 1 chrV:13664510-13664590 ( 53) ATTTCAAA 1 chrII:7781273-7781353 ( 61) ATTTCAAA 1 chrII:6536068-6536148 ( 37) ATTTCAAA 1 chrV:5939671-5939751 ( 8) ATTTCAAA 1 chrIII:11565755-11565835 ( 21) ATTTCAAA 1 chrII:9597993-9598073 ( 47) AATTTCAA 1 chrIII:4654175-4654255 ( 14) AATTCCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTYRAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.61772 E= 1.2e-009 175 -1234 -1234 -1234 126 -1234 -1234 -7 -1234 -1234 -1234 172 -1234 -1234 -1234 172 -1234 92 -1234 102 70 -240 129 -1234 175 -1234 -1234 -1234 175 -1234 -1234 -1234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTYRAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.2e-009 1.000000 0.000000 0.000000 0.000000 0.711538 0.000000 0.000000 0.288462 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.384615 0.000000 0.615385 0.480769 0.038462 0.480769 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTYRAA MEME-2 regular expression -------------------------------------------------------------------------------- A[AT]TT[TC][AG]AA -------------------------------------------------------------------------------- Time 8.64 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGGCGCG MEME-3 width = 8 sites = 33 llr = 280 E-value = 2.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGGCGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3:::1::: pos.-specific C :2:19:72 probability G :199:a38 matrix T 771::::: bits 2.3 * 2.1 * 1.9 * * 1.6 **** * Relative 1.4 ****** Entropy 1.2 ****** (12.2 bits) 0.9 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGGCGCG consensus AC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5448332-5448412 44 5.70e-06 CTTTTTTAGG TTGGCGCG AGTTTTTGCA chrIV:1309963-1310043 65 5.70e-06 CTTTTAAAAA TTGGCGCG AACGCGCA chrIII:12278915-12278995 73 5.70e-06 gaattttttt ttggcgcg chrII:2204246-2204326 43 1.51e-05 ACACTTCTTT TCGGCGCG AGGTTTGAAT chrV:4339687-4339767 10 2.06e-05 taaaatcac ttggcggg aggttcaaat chrI:3600864-3600944 47 2.06e-05 ACTTTTCCAA TTGGCGGG GATTCAAAtc chrIII:1533258-1533338 38 2.06e-05 AAATCGCTTG TTGGCGGG TGTTTGAAAT chrII:9169623-9169703 40 2.44e-05 CTCGCAACGC ACGGCGCG TCTTCAAATT chrIV:9777697-9777777 65 2.44e-05 GGCAATTGCA ACGGCGCG AATTTCGA chrII:7781273-7781353 34 3.35e-05 CAACCAATTC TCGGCGGG AACCAGCGGT chrI:534294-534374 50 3.35e-05 TTTGCGTACC TCGGCGGG AATTTAAAGA chrV:6593851-6593931 39 3.35e-05 TCCACCGCAC ATGGCGGG AAGGTTTCAA chrIV:8869799-8869879 52 3.35e-05 AGTGGCGTTA TCGGCGGG AATATTTAAT chrII:7631662-7631742 57 3.94e-05 CTATAATATC TTGGCGCC TTGCCAAGTG chrIV:10242889-10242969 1 3.94e-05 . TTGGCGCC AAAAAGTTTC chrII:10926345-10926425 6 3.94e-05 AAAAT TTGGCGCC ATGGCGCTTA chrIII:1208011-1208091 46 4.31e-05 CAGTTTTTTC TGGGCGCG GAATTCGAAT chrII:9706398-9706478 11 5.64e-05 ACAGACGTTA ATGGCGCC TCGTTCAAAT chrII:10350633-10350713 53 7.63e-05 CATGCGACTT TTGGAGCG AAATTCAAAT chrIV:7632665-7632745 29 7.63e-05 TTTCTGAATT TTGCCGCG TATTTGTTTC chrI:1183970-1184050 28 7.63e-05 aaagttctca ttggagcg cgcttgctcc chrIV:5731759-5731839 22 8.51e-05 AGATTACGAC TTTGCGCG TTGTTTATCG chrI:10591688-10591768 63 8.51e-05 GGAGCACTCA TTTGCGCG CGAAATTCAA chrI:13161915-13161995 58 8.51e-05 GAACAACTAT TTTGCGCG GTTTTTCAAA chrIII:12152306-12152386 46 9.24e-05 TTTTATCAAC AGGGCGCG TTTGCACTTT chrI:10173244-10173324 50 1.33e-04 ACGCCACAAA TCGCCGCG AAAAGTGAAG chrI:5274306-5274386 29 1.33e-04 AATTCAAAAA ATGGCGGC GATAATGTTC chrIII:12534060-12534140 37 1.33e-04 gattttagcg atggagcg tgcttgctcg chrIV:8511235-8511315 4 1.33e-04 GTC TCGCCGCG CTTTTCACCA chrI:9581584-9581664 68 1.33e-04 AGACAGACAG ATGGCGGC AATTC chrV:18086927-18087007 53 1.33e-04 ttcgagtcca atggagcg cacttgcatt chrII:386133-386213 18 1.61e-04 CAAGTCCGCA ATTGCGCG TCAGGTGTTG chrV:13312443-13312523 44 1.76e-04 CTATTCTGTC GTGGCGGG ACGCGGAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5448332-5448412 5.7e-06 43_[+3]_29 chrIV:1309963-1310043 5.7e-06 64_[+3]_8 chrIII:12278915-12278995 5.7e-06 72_[+3] chrII:2204246-2204326 1.5e-05 42_[+3]_30 chrV:4339687-4339767 2.1e-05 9_[+3]_63 chrI:3600864-3600944 2.1e-05 46_[+3]_26 chrIII:1533258-1533338 2.1e-05 37_[+3]_35 chrII:9169623-9169703 2.4e-05 39_[+3]_33 chrIV:9777697-9777777 2.4e-05 64_[+3]_8 chrII:7781273-7781353 3.3e-05 33_[+3]_39 chrI:534294-534374 3.3e-05 49_[+3]_23 chrV:6593851-6593931 3.3e-05 38_[+3]_34 chrIV:8869799-8869879 3.3e-05 51_[+3]_21 chrII:7631662-7631742 3.9e-05 56_[+3]_16 chrIV:10242889-10242969 3.9e-05 [+3]_72 chrII:10926345-10926425 3.9e-05 5_[+3]_67 chrIII:1208011-1208091 4.3e-05 45_[+3]_27 chrII:9706398-9706478 5.6e-05 10_[+3]_62 chrII:10350633-10350713 7.6e-05 52_[+3]_20 chrIV:7632665-7632745 7.6e-05 28_[+3]_44 chrI:1183970-1184050 7.6e-05 27_[+3]_45 chrIV:5731759-5731839 8.5e-05 21_[+3]_51 chrI:10591688-10591768 8.5e-05 62_[+3]_10 chrI:13161915-13161995 8.5e-05 57_[+3]_15 chrIII:12152306-12152386 9.2e-05 45_[+3]_27 chrI:10173244-10173324 0.00013 49_[+3]_23 chrI:5274306-5274386 0.00013 28_[+3]_44 chrIII:12534060-12534140 0.00013 36_[+3]_36 chrIV:8511235-8511315 0.00013 3_[+3]_69 chrI:9581584-9581664 0.00013 67_[+3]_5 chrV:18086927-18087007 0.00013 52_[+3]_20 chrII:386133-386213 0.00016 17_[+3]_55 chrV:13312443-13312523 0.00018 43_[+3]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGGCGCG width=8 seqs=33 chrIII:5448332-5448412 ( 44) TTGGCGCG 1 chrIV:1309963-1310043 ( 65) TTGGCGCG 1 chrIII:12278915-12278995 ( 73) TTGGCGCG 1 chrII:2204246-2204326 ( 43) TCGGCGCG 1 chrV:4339687-4339767 ( 10) TTGGCGGG 1 chrI:3600864-3600944 ( 47) TTGGCGGG 1 chrIII:1533258-1533338 ( 38) TTGGCGGG 1 chrII:9169623-9169703 ( 40) ACGGCGCG 1 chrIV:9777697-9777777 ( 65) ACGGCGCG 1 chrII:7781273-7781353 ( 34) TCGGCGGG 1 chrI:534294-534374 ( 50) TCGGCGGG 1 chrV:6593851-6593931 ( 39) ATGGCGGG 1 chrIV:8869799-8869879 ( 52) TCGGCGGG 1 chrII:7631662-7631742 ( 57) TTGGCGCC 1 chrIV:10242889-10242969 ( 1) TTGGCGCC 1 chrII:10926345-10926425 ( 6) TTGGCGCC 1 chrIII:1208011-1208091 ( 46) TGGGCGCG 1 chrII:9706398-9706478 ( 11) ATGGCGCC 1 chrII:10350633-10350713 ( 53) TTGGAGCG 1 chrIV:7632665-7632745 ( 29) TTGCCGCG 1 chrI:1183970-1184050 ( 28) TTGGAGCG 1 chrIV:5731759-5731839 ( 22) TTTGCGCG 1 chrI:10591688-10591768 ( 63) TTTGCGCG 1 chrI:13161915-13161995 ( 58) TTTGCGCG 1 chrIII:12152306-12152386 ( 46) AGGGCGCG 1 chrI:10173244-10173324 ( 50) TCGCCGCG 1 chrI:5274306-5274386 ( 29) ATGGCGGC 1 chrIII:12534060-12534140 ( 37) ATGGAGCG 1 chrIV:8511235-8511315 ( 4) TCGCCGCG 1 chrI:9581584-9581664 ( 68) ATGGCGGC 1 chrV:18086927-18087007 ( 53) ATGGAGCG 1 chrII:386133-386213 ( 18) ATTGCGCG 1 chrV:13312443-13312523 ( 44) GTGGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.87609 E= 2.3e-003 3 -1169 -270 114 -1169 26 -170 120 -1169 -1169 216 -132 -1169 -116 220 -1169 -129 211 -1169 -1169 -1169 -1169 234 -1169 -1169 178 62 -1169 -1169 -16 205 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 2.3e-003 0.303030 0.000000 0.030303 0.666667 0.000000 0.242424 0.060606 0.696970 0.000000 0.000000 0.878788 0.121212 0.000000 0.090909 0.909091 0.000000 0.121212 0.878788 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.696970 0.303030 0.000000 0.000000 0.181818 0.818182 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGCG MEME-3 regular expression -------------------------------------------------------------------------------- [TA][TC]GGCG[CG]G -------------------------------------------------------------------------------- Time 12.78 secs. ******************************************************************************** ******************************************************************************** MOTIF RMAAAAAA MEME-4 width = 8 sites = 59 llr = 435 E-value = 1.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RMAAAAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 275aaaaa pos.-specific C 132::::: probability G 5:3::::: matrix T 2::::::: bits 2.3 2.1 1.9 1.6 ***** Relative 1.4 ***** Entropy 1.2 ***** (10.6 bits) 0.9 * ***** 0.7 * ***** 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GAAAAAAA consensus ACG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMAAAAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:357720-357800 14 4.02e-05 GCAGAACTAT GAAAAAAA CCGACTAAAA chrX:1504345-1504425 18 4.02e-05 CAATTTACTT GAAAAAAA AACAGAGAAC chrII:11022163-11022243 72 4.02e-05 TGGACAATTG GAAAAAAA A chrII:6974145-6974225 18 4.02e-05 AGAGAAAAAA GAAAAAAA CAACAGCAAA chrV:12460823-12460903 53 4.02e-05 AAGCTTTCCC GAAAAAAA ACCTCTAAAA chrI:5811883-5811963 19 4.02e-05 ACGAAAAAAT GAAAAAAA AACCCCCTTT chrV:965027-965107 2 4.02e-05 T GAAAAAAA TATGTTTTGT chrIV:2890713-2890793 18 4.02e-05 gaagaaaaaa gaaaaaaa caaaaataaa chrX:7955382-7955462 35 4.02e-05 ATTCTGTGTT GAAAAAAA AAACAAAATT chrV:5204329-5204409 7 4.02e-05 AATTTT GAAAAAAA AAACTAAATT chrIII:2619729-2619809 10 4.02e-05 TGTGTTCCA GAAAAAAA CAAAAAATTG chrIII:12278915-12278995 15 4.02e-05 ctgaaaaacc gaaaaaaa agctcccgta chrIII:4489068-4489148 5 6.76e-05 GAGT GCAAAAAA TAACCTCGTA chrV:12816480-12816560 57 6.76e-05 TTCAGATTTG GCAAAAAA GATTTTTTCA chrIV:5188222-5188302 1 6.76e-05 . GCAAAAAA AGTTTGTGAA chrII:4828218-4828298 8 6.76e-05 ACGGTTG GCAAAAAA AATAAAATTT chrI:10033545-10033625 7 6.76e-05 CAAGAG GCAAAAAA GCTACATGGG chrIII:7795452-7795532 21 9.42e-05 AAAGGTTCAC GAGAAAAA TGCCACTGAA chrI:9581584-9581664 16 9.42e-05 AAGAGACGCA GAGAAAAA GATTGCAAAT chrIII:4153120-4153200 65 9.42e-05 TTAATCTTTC GAGAAAAA ATAGAGTT chrV:8031295-8031375 20 1.22e-04 TGTTTCGTTT GACAAAAA AATATTTTTT chrIV:9386155-9386235 57 1.22e-04 TCCAAAATGA GACAAAAA GTGCAACGGA chrIII:7074134-7074214 4 1.22e-04 AGC GACAAAAA AAGAGTAGTG chrII:7778161-7778241 15 1.22e-04 TCTTACAAAA GACAAAAA AGATAAATCG chrII:8457594-8457674 52 1.40e-04 TGGGCTTGCG GCGAAAAA GTTCCATGTG chrI:15035905-15035985 32 1.59e-04 TTGAAAAATT GCCAAAAA CGAGACTCCG chrIV:9438624-9438704 45 1.59e-04 AATCTACAGC GCCAAAAA AGATTCATGT chrV:6043429-6043509 12 1.59e-04 TATTGAAATC GCCAAAAA CTCGAATTTG chrX:15604692-15604772 7 2.19e-04 TTAAAC AAAAAAAA TAAATTTTGA chrX:14164910-14164990 14 2.19e-04 CGGTTTGATT AAAAAAAA ACAAAAATCT chrIV:1459475-1459555 21 2.19e-04 TTTGAAATTA AAAAAAAA TAAATTCATT chrIV:874836-874916 2 2.61e-04 A ACAAAAAA CTAATTTTAA chrIV:13083506-13083586 69 2.61e-04 AAAATCAGCT ACAAAAAA CTAA chrX:5117743-5117823 18 2.61e-04 CAGGAGCAGC ACAAAAAA CTAAACAAGG chrI:5134182-5134262 65 4.04e-04 GTTATTTTAA AAGAAAAA TCAATTCA chrIII:2151613-2151693 5 4.04e-04 aatt caaaaaAA TGGAGAAAAT chrIII:13439579-13439659 24 4.04e-04 GTGGCCGTGG AAGAAAAA ACAATACATA chrV:5275783-5275863 25 4.04e-04 TTTTTTCCGG TAAAAAAA GAAATCTTTG chrII:7987034-7987114 9 4.04e-04 GGAGCCGA AAGAAAAA ATAAATGTTT chrI:7660587-7660667 12 4.04e-04 AACCGAGACA AAGAAAAA CAATCGTATA chrI:14104704-14104784 31 4.04e-04 GGGGCCACTG AAGAAAAA TTGAAAAATA chrI:13161915-13161995 5 4.04e-04 aaaa taaaaaaa caaaatTTTG chrI:3910628-3910708 14 4.04e-04 ACTTTTGATT TAAAAAAA TTTTGTAAAC chrIV:8741154-8741234 51 4.45e-04 GCCCTCTGAA AACAAAAA CATTCATTTT chrII:9285691-9285771 46 5.43e-04 TTGCCATGAT TCAAAAAA TAAAAACTAT chrV:11535912-11535992 7 5.43e-04 GGGAAA ACGAAAAA TGAAAACCGA chrV:1018786-1018866 38 5.43e-04 agtcttcgcc ccaaaaaa tactgtacga chrIV:6555881-6555961 63 5.43e-04 AGAGGGAATT TCAAAAAA TGTTTTTTGG chrV:4339687-4339767 70 5.43e-04 ttttcaattt tcaaaaaa tca chrIII:491251-491331 12 5.43e-04 TGAAATCCCT CCAAAAAA TAGTCTGCGC chrIII:4875868-4875948 3 5.43e-04 AC ACGAAAAA GAGCTCTCCC chrV:20790965-20791045 48 6.12e-04 GAAGTATTTA CAGAAAAA GATAAAATTT chrV:9327290-9327370 2 6.12e-04 A TAGAAAAA ACCTAGCCGT chrV:5596523-5596603 16 6.12e-04 CATTTAATGT CAGAAAAA TGTCTGCCGC chrIV:8790542-8790622 7 7.10e-04 TCTTGA CACAAAAA GCGACAAGGG chrIII:4658513-4658593 49 7.10e-04 AATGTGCTGT CACAAAAA GGGAACATAG chrIII:6417930-6418010 11 7.10e-04 AGATTTCCGA TACAAAAA TAATACCTGT chrI:3600864-3600944 73 7.10e-04 tcagtaattt tacaaaaa chrV:20781186-20781266 32 7.57e-04 CTAAATTAAA TCGAAAAA CCTCATGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMAAAAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:357720-357800 4e-05 13_[+4]_59 chrX:1504345-1504425 4e-05 17_[+4]_55 chrII:11022163-11022243 4e-05 71_[+4]_1 chrII:6974145-6974225 4e-05 17_[+4]_55 chrV:12460823-12460903 4e-05 52_[+4]_20 chrI:5811883-5811963 4e-05 18_[+4]_54 chrV:965027-965107 4e-05 1_[+4]_71 chrIV:2890713-2890793 4e-05 17_[+4]_55 chrX:7955382-7955462 4e-05 34_[+4]_38 chrV:5204329-5204409 4e-05 6_[+4]_66 chrIII:2619729-2619809 4e-05 9_[+4]_63 chrIII:12278915-12278995 4e-05 14_[+4]_58 chrIII:4489068-4489148 6.8e-05 4_[+4]_68 chrV:12816480-12816560 6.8e-05 56_[+4]_16 chrIV:5188222-5188302 6.8e-05 [+4]_72 chrII:4828218-4828298 6.8e-05 7_[+4]_65 chrI:10033545-10033625 6.8e-05 6_[+4]_66 chrIII:7795452-7795532 9.4e-05 20_[+4]_52 chrI:9581584-9581664 9.4e-05 15_[+4]_57 chrIII:4153120-4153200 9.4e-05 64_[+4]_8 chrV:8031295-8031375 0.00012 19_[+4]_53 chrIV:9386155-9386235 0.00012 56_[+4]_16 chrIII:7074134-7074214 0.00012 3_[+4]_69 chrII:7778161-7778241 0.00012 14_[+4]_58 chrII:8457594-8457674 0.00014 51_[+4]_21 chrI:15035905-15035985 0.00016 31_[+4]_41 chrIV:9438624-9438704 0.00016 44_[+4]_28 chrV:6043429-6043509 0.00016 11_[+4]_61 chrX:15604692-15604772 0.00022 6_[+4]_66 chrX:14164910-14164990 0.00022 13_[+4]_59 chrIV:1459475-1459555 0.00022 20_[+4]_52 chrIV:874836-874916 0.00026 1_[+4]_71 chrIV:13083506-13083586 0.00026 68_[+4]_4 chrX:5117743-5117823 0.00026 17_[+4]_55 chrI:5134182-5134262 0.0004 64_[+4]_8 chrIII:2151613-2151693 0.0004 4_[+4]_68 chrIII:13439579-13439659 0.0004 23_[+4]_49 chrV:5275783-5275863 0.0004 24_[+4]_48 chrII:7987034-7987114 0.0004 8_[+4]_64 chrI:7660587-7660667 0.0004 11_[+4]_61 chrI:14104704-14104784 0.0004 30_[+4]_42 chrI:13161915-13161995 0.0004 4_[+4]_68 chrI:3910628-3910708 0.0004 13_[+4]_59 chrIV:8741154-8741234 0.00045 50_[+4]_22 chrII:9285691-9285771 0.00054 45_[+4]_27 chrV:11535912-11535992 0.00054 6_[+4]_66 chrV:1018786-1018866 0.00054 37_[+4]_35 chrIV:6555881-6555961 0.00054 62_[+4]_10 chrV:4339687-4339767 0.00054 69_[+4]_3 chrIII:491251-491331 0.00054 11_[+4]_61 chrIII:4875868-4875948 0.00054 2_[+4]_70 chrV:20790965-20791045 0.00061 47_[+4]_25 chrV:9327290-9327370 0.00061 1_[+4]_71 chrV:5596523-5596603 0.00061 15_[+4]_57 chrIV:8790542-8790622 0.00071 6_[+4]_66 chrIII:4658513-4658593 0.00071 48_[+4]_24 chrIII:6417930-6418010 0.00071 10_[+4]_62 chrI:3600864-3600944 0.00071 72_[+4] chrV:20781186-20781266 0.00076 31_[+4]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMAAAAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RMAAAAAA width=8 seqs=59 chrIII:357720-357800 ( 14) GAAAAAAA 1 chrX:1504345-1504425 ( 18) GAAAAAAA 1 chrII:11022163-11022243 ( 72) GAAAAAAA 1 chrII:6974145-6974225 ( 18) GAAAAAAA 1 chrV:12460823-12460903 ( 53) GAAAAAAA 1 chrI:5811883-5811963 ( 19) GAAAAAAA 1 chrV:965027-965107 ( 2) GAAAAAAA 1 chrIV:2890713-2890793 ( 18) GAAAAAAA 1 chrX:7955382-7955462 ( 35) GAAAAAAA 1 chrV:5204329-5204409 ( 7) GAAAAAAA 1 chrIII:2619729-2619809 ( 10) GAAAAAAA 1 chrIII:12278915-12278995 ( 15) GAAAAAAA 1 chrIII:4489068-4489148 ( 5) GCAAAAAA 1 chrV:12816480-12816560 ( 57) GCAAAAAA 1 chrIV:5188222-5188302 ( 1) GCAAAAAA 1 chrII:4828218-4828298 ( 8) GCAAAAAA 1 chrI:10033545-10033625 ( 7) GCAAAAAA 1 chrIII:7795452-7795532 ( 21) GAGAAAAA 1 chrI:9581584-9581664 ( 16) GAGAAAAA 1 chrIII:4153120-4153200 ( 65) GAGAAAAA 1 chrV:8031295-8031375 ( 20) GACAAAAA 1 chrIV:9386155-9386235 ( 57) GACAAAAA 1 chrIII:7074134-7074214 ( 4) GACAAAAA 1 chrII:7778161-7778241 ( 15) GACAAAAA 1 chrII:8457594-8457674 ( 52) GCGAAAAA 1 chrI:15035905-15035985 ( 32) GCCAAAAA 1 chrIV:9438624-9438704 ( 45) GCCAAAAA 1 chrV:6043429-6043509 ( 12) GCCAAAAA 1 chrX:15604692-15604772 ( 7) AAAAAAAA 1 chrX:14164910-14164990 ( 14) AAAAAAAA 1 chrIV:1459475-1459555 ( 21) AAAAAAAA 1 chrIV:874836-874916 ( 2) ACAAAAAA 1 chrIV:13083506-13083586 ( 69) ACAAAAAA 1 chrX:5117743-5117823 ( 18) ACAAAAAA 1 chrI:5134182-5134262 ( 65) AAGAAAAA 1 chrIII:2151613-2151693 ( 5) CAAAAAAA 1 chrIII:13439579-13439659 ( 24) AAGAAAAA 1 chrV:5275783-5275863 ( 25) TAAAAAAA 1 chrII:7987034-7987114 ( 9) AAGAAAAA 1 chrI:7660587-7660667 ( 12) AAGAAAAA 1 chrI:14104704-14104784 ( 31) AAGAAAAA 1 chrI:13161915-13161995 ( 5) TAAAAAAA 1 chrI:3910628-3910708 ( 14) TAAAAAAA 1 chrIV:8741154-8741234 ( 51) AACAAAAA 1 chrII:9285691-9285771 ( 46) TCAAAAAA 1 chrV:11535912-11535992 ( 7) ACGAAAAA 1 chrV:1018786-1018866 ( 38) CCAAAAAA 1 chrIV:6555881-6555961 ( 63) TCAAAAAA 1 chrV:4339687-4339767 ( 70) TCAAAAAA 1 chrIII:491251-491331 ( 12) CCAAAAAA 1 chrIII:4875868-4875948 ( 3) ACGAAAAA 1 chrV:20790965-20791045 ( 48) CAGAAAAA 1 chrV:9327290-9327370 ( 2) TAGAAAAA 1 chrV:5596523-5596603 ( 16) CAGAAAAA 1 chrIV:8790542-8790622 ( 7) CACAAAAA 1 chrIII:4658513-4658593 ( 49) CACAAAAA 1 chrIII:6417930-6418010 ( 11) TACAAAAA 1 chrI:3600864-3600944 ( 73) TACAAAAA 1 chrV:20781186-20781266 ( 32) TCGAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMAAAAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.53308 E= 1.5e-002 -32 -77 127 -84 115 74 -1253 -1253 87 0 37 -1253 175 -1253 -1253 -1253 175 -1253 -1253 -1253 175 -1253 -1253 -1253 175 -1253 -1253 -1253 175 -1253 -1253 -1253 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMAAAAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 1.5e-002 0.237288 0.118644 0.474576 0.169492 0.661017 0.338983 0.000000 0.000000 0.542373 0.203390 0.254237 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMAAAAAA MEME-4 regular expression -------------------------------------------------------------------------------- [GA][AC][AGC]AAAAA -------------------------------------------------------------------------------- Time 16.23 secs. ******************************************************************************** ******************************************************************************** MOTIF NTTTTTTC MEME-5 width = 8 sites = 47 llr = 361 E-value = 7.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif NTTTTTTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 33:::::: pos.-specific C 2::::::a probability G 3:::::3: matrix T 37aaaa7: bits 2.3 * 2.1 * 1.9 * 1.6 **** * Relative 1.4 **** * Entropy 1.2 **** * (11.1 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******* 0.0 -------- Multilevel ATTTTTTC consensus GA G sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTTTTTTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:9169623-9169703 61 3.09e-05 TCAAATTTGG GTTTTTTC TGTTTTCCTC chrIII:12534060-12534140 72 3.09e-05 tttatttttt gttttttc a chrIII:1208011-1208091 38 3.09e-05 TACAATTTCA GTTTTTTC TGGGCGCGGA chrIV:9403965-9404045 43 3.09e-05 TTTAAATTTA GTTTTTTC GTGGAATTTT chrIII:2619729-2619809 27 3.09e-05 ACAAAAAATT GTTTTTTC AGAAATCTGT chrIV:2670831-2670911 44 6.28e-05 TTAGCGCGAG CTTTTTTC CGCGGGAATT chrI:4829913-4829993 62 6.28e-05 ACTTGTTTCC CTTTTTTC AGTGGCCGTT chrIII:7737077-7737157 39 6.28e-05 CATATGTTAT CTTTTTTC CTTCTTATTC chrIII:11565755-11565835 65 6.28e-05 AGCGCGCATG CTTTTTTC GTTTTTCT chrX:15546412-15546492 25 1.30e-04 ATAATTTGTT ATTTTTTC AAATAGACGA chrIII:5448332-5448412 53 1.30e-04 GTTGGCGCGA GTTTTTGC AATGCAAACG chrV:12063172-12063252 7 1.30e-04 TTGCTG GTTTTTGC CCGCACTAGT chrIV:6958855-6958935 21 1.30e-04 ctctttctat gtttttgc ttctttttct chrV:12816480-12816560 66 1.30e-04 GGCAAAAAAG ATTTTTTC ATTAGTT chrV:4339687-4339767 42 1.30e-04 attcgacgag attttttc aactgagatt chrIV:261767-261847 70 1.77e-04 AAATAGAGTT TTTTTTTC GGA chrIV:3526653-3526733 20 1.77e-04 TTTGTGTTGA TTTTTTTC CCGGTGTTCA chrV:14523042-14523122 9 1.77e-04 ATTTATTG TTTTTTTC GATAATAATA chrII:9242987-9243067 66 1.77e-04 TCGACACAAG TTTTTTTC GGTTTTT chrV:12970754-12970834 46 1.77e-04 TTGATTTCCA TTTTTTTC ACAACGAAAA chrV:5275783-5275863 14 1.77e-04 AAGGACAACA TTTTTTTC CGGTAAAAAA chrV:15184595-15184675 28 1.77e-04 CAGCTCTAAC TTTTTTTC TCTTTCCCTG chrII:8276260-8276340 18 1.77e-04 TCACGCGCCC TTTTTTTC GCATGTGGAT chrI:1183970-1184050 70 1.77e-04 gagctatcca tttttttc agc chrV:11535912-11535992 51 1.98e-04 CTGTCTTCTC CTTTTTGC GATTTTTTAA chrI:5811883-5811963 33 1.98e-04 AAAAAACCCC CTTTTTGC CCCTGATTGC chrIII:10093250-10093330 53 1.98e-04 TTGCCACGAG CTTTTTGC GAGGCAATTC chrV:15597-15677 40 1.98e-04 TGATTCTTTT CTTTTTGC TGCTGTGCCG chrV:20782772-20782852 72 1.98e-04 CATGAAGGAA CTTTTTGC C chrIV:9319079-9319159 44 2.59e-04 GAACATTCTC ATTTTTGC GTACTGAGGT chrII:7631662-7631742 12 2.59e-04 TATTTTTCTG ATTTTTGC CCCATGACGT chrI:4765565-4765645 66 2.59e-04 TTGAATTTTA ATTTTTGC CCGCCAA chrI:12183272-12183352 72 2.59e-04 TGTCATAAAT GATTTTTC C chrV:6220874-6220954 45 2.59e-04 tttccctctt gatttttc atttgaccgt chrII:7775155-7775235 25 2.59e-04 TGTTGCGAAC GATTTTTC CATGGGAAAA chrV:13256642-13256722 66 2.90e-04 AAATGTACTC TTTTTTGC TGACTTT chrIII:491251-491331 67 3.21e-04 agcgcgcttg catttttc cttttt chrIII:2151613-2151693 56 3.86e-04 TGAGGTACGT GATTTTGC GTGCGCGTGT chrIII:4489068-4489148 57 3.86e-04 CGCCAGCAAC AATTTTTC GCAGCGACCG chrV:9547815-9547895 39 3.86e-04 GACGCTCCTG AATTTTTC TTGTCCATGA chrII:15208330-15208410 73 3.86e-04 CACGCGCAGA AATTTTTC chrV:7431390-7431470 49 3.86e-04 AATTTTCCCC AATTTTTC CAATGATTTT chrIII:6123850-6123930 18 3.86e-04 AACTATACCC AATTTTTC GTTCCTCACC chrV:18086927-18087007 3 3.86e-04 GA AATTTTTC TTCCAATTCG chrI:534294-534374 2 4.33e-04 T TATTTTTC TACAAAACTG chrM:8749-8829 26 4.33e-04 TTCACGTGCT TATTTTTC GGCTGCTACT chrV:1018786-1018866 20 4.83e-04 ccagacgcga aattttgc agtcttcgcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTTTTTTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:9169623-9169703 3.1e-05 60_[+5]_12 chrIII:12534060-12534140 3.1e-05 71_[+5]_1 chrIII:1208011-1208091 3.1e-05 37_[+5]_35 chrIV:9403965-9404045 3.1e-05 42_[+5]_30 chrIII:2619729-2619809 3.1e-05 26_[+5]_46 chrIV:2670831-2670911 6.3e-05 43_[+5]_29 chrI:4829913-4829993 6.3e-05 61_[+5]_11 chrIII:7737077-7737157 6.3e-05 38_[+5]_34 chrIII:11565755-11565835 6.3e-05 64_[+5]_8 chrX:15546412-15546492 0.00013 24_[+5]_48 chrIII:5448332-5448412 0.00013 52_[+5]_20 chrV:12063172-12063252 0.00013 6_[+5]_66 chrIV:6958855-6958935 0.00013 20_[+5]_52 chrV:12816480-12816560 0.00013 65_[+5]_7 chrV:4339687-4339767 0.00013 41_[+5]_31 chrIV:261767-261847 0.00018 69_[+5]_3 chrIV:3526653-3526733 0.00018 19_[+5]_53 chrV:14523042-14523122 0.00018 8_[+5]_64 chrII:9242987-9243067 0.00018 65_[+5]_7 chrV:12970754-12970834 0.00018 45_[+5]_27 chrV:5275783-5275863 0.00018 13_[+5]_59 chrV:15184595-15184675 0.00018 27_[+5]_45 chrII:8276260-8276340 0.00018 17_[+5]_55 chrI:1183970-1184050 0.00018 69_[+5]_3 chrV:11535912-11535992 0.0002 50_[+5]_22 chrI:5811883-5811963 0.0002 32_[+5]_40 chrIII:10093250-10093330 0.0002 52_[+5]_20 chrV:15597-15677 0.0002 39_[+5]_33 chrV:20782772-20782852 0.0002 71_[+5]_1 chrIV:9319079-9319159 0.00026 43_[+5]_29 chrII:7631662-7631742 0.00026 11_[+5]_61 chrI:4765565-4765645 0.00026 65_[+5]_7 chrI:12183272-12183352 0.00026 71_[+5]_1 chrV:6220874-6220954 0.00026 44_[+5]_28 chrII:7775155-7775235 0.00026 24_[+5]_48 chrV:13256642-13256722 0.00029 65_[+5]_7 chrIII:491251-491331 0.00032 66_[+5]_6 chrIII:2151613-2151693 0.00039 55_[+5]_17 chrIII:4489068-4489148 0.00039 56_[+5]_16 chrV:9547815-9547895 0.00039 38_[+5]_34 chrII:15208330-15208410 0.00039 72_[+5] chrV:7431390-7431470 0.00039 48_[+5]_24 chrIII:6123850-6123930 0.00039 17_[+5]_55 chrV:18086927-18087007 0.00039 2_[+5]_70 chrI:534294-534374 0.00043 1_[+5]_71 chrM:8749-8829 0.00043 25_[+5]_47 chrV:1018786-1018866 0.00048 19_[+5]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTTTTTTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF NTTTTTTC width=8 seqs=47 chrII:9169623-9169703 ( 61) GTTTTTTC 1 chrIII:12534060-12534140 ( 72) GTTTTTTC 1 chrIII:1208011-1208091 ( 38) GTTTTTTC 1 chrIV:9403965-9404045 ( 43) GTTTTTTC 1 chrIII:2619729-2619809 ( 27) GTTTTTTC 1 chrIV:2670831-2670911 ( 44) CTTTTTTC 1 chrI:4829913-4829993 ( 62) CTTTTTTC 1 chrIII:7737077-7737157 ( 39) CTTTTTTC 1 chrIII:11565755-11565835 ( 65) CTTTTTTC 1 chrX:15546412-15546492 ( 25) ATTTTTTC 1 chrIII:5448332-5448412 ( 53) GTTTTTGC 1 chrV:12063172-12063252 ( 7) GTTTTTGC 1 chrIV:6958855-6958935 ( 21) GTTTTTGC 1 chrV:12816480-12816560 ( 66) ATTTTTTC 1 chrV:4339687-4339767 ( 42) ATTTTTTC 1 chrIV:261767-261847 ( 70) TTTTTTTC 1 chrIV:3526653-3526733 ( 20) TTTTTTTC 1 chrV:14523042-14523122 ( 9) TTTTTTTC 1 chrII:9242987-9243067 ( 66) TTTTTTTC 1 chrV:12970754-12970834 ( 46) TTTTTTTC 1 chrV:5275783-5275863 ( 14) TTTTTTTC 1 chrV:15184595-15184675 ( 28) TTTTTTTC 1 chrII:8276260-8276340 ( 18) TTTTTTTC 1 chrI:1183970-1184050 ( 70) TTTTTTTC 1 chrV:11535912-11535992 ( 51) CTTTTTGC 1 chrI:5811883-5811963 ( 33) CTTTTTGC 1 chrIII:10093250-10093330 ( 53) CTTTTTGC 1 chrV:15597-15677 ( 40) CTTTTTGC 1 chrV:20782772-20782852 ( 72) CTTTTTGC 1 chrIV:9319079-9319159 ( 44) ATTTTTGC 1 chrII:7631662-7631742 ( 12) ATTTTTGC 1 chrI:4765565-4765645 ( 66) ATTTTTGC 1 chrI:12183272-12183352 ( 72) GATTTTTC 1 chrV:6220874-6220954 ( 45) GATTTTTC 1 chrII:7775155-7775235 ( 25) GATTTTTC 1 chrV:13256642-13256722 ( 66) TTTTTTGC 1 chrIII:491251-491331 ( 67) CATTTTTC 1 chrIII:2151613-2151693 ( 56) GATTTTGC 1 chrIII:4489068-4489148 ( 57) AATTTTTC 1 chrV:9547815-9547895 ( 39) AATTTTTC 1 chrII:15208330-15208410 ( 73) AATTTTTC 1 chrV:7431390-7431470 ( 49) AATTTTTC 1 chrIII:6123850-6123930 ( 18) AATTTTTC 1 chrV:18086927-18087007 ( 3) AATTTTTC 1 chrI:534294-534374 ( 2) TATTTTTC 1 chrM:8749-8829 ( 26) TATTTTTC 1 chrV:1018786-1018866 ( 20) AATTTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTTTTTTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.68137 E= 7.1e-001 -10 7 37 -25 1 -1220 -1220 121 -1220 -1220 -1220 172 -1220 -1220 -1220 172 -1220 -1220 -1220 172 -1220 -1220 -1220 172 -1220 -1220 59 121 -1220 230 -1220 -1220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTTTTTTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 7.1e-001 0.276596 0.212766 0.255319 0.255319 0.297872 0.000000 0.000000 0.702128 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.297872 0.702128 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTTTTTTC MEME-5 regular expression -------------------------------------------------------------------------------- [AGTC][TA]TTTT[TG]C -------------------------------------------------------------------------------- Time 19.46 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:3910628-3910708 1.23e-01 80 chrX:2969786-2969866 8.19e-01 80 chrIV:1177853-1177933 9.24e-02 80 chrIV:8869799-8869879 3.39e-04 12_[+1(2.19e-05)]_31_[+3(3.35e-05)]_\ 21 chrIII:12278915-12278995 2.35e-06 14_[+4(4.02e-05)]_27_[+1(8.24e-05)]_\ 15_[+3(5.70e-06)] chrII:8020379-8020459 4.43e-01 80 chrI:14560307-14560387 3.45e-03 71_[+1(7.71e-05)]_1 chrI:10033545-10033625 1.64e-01 6_[+4(6.76e-05)]_66 chrIV:11820209-11820289 1.00e-01 80 chrIII:12377431-12377511 1.35e-04 18_[+1(7.71e-05)]_54 chrX:13350456-13350536 4.07e-01 80 chrM:13602-13682 9.85e-01 80 chrIII:5942227-5942307 4.83e-01 80 chrIII:7952248-7952328 9.89e-02 80 chrI:6038173-6038253 3.55e-02 80 chrII:7775155-7775235 2.66e-01 80 chrIII:4654175-4654255 1.24e-01 80 chrIII:11565755-11565835 4.99e-05 32_[+1(4.12e-05)]_12_[+1(7.71e-05)]_\ 4_[+5(6.28e-05)]_8 chrII:10926345-10926425 5.85e-02 5_[+3(3.94e-05)]_67 chrX:9705728-9705808 1.66e-01 80 chrX:5117743-5117823 4.39e-01 80 chrIII:7737077-7737157 1.70e-01 38_[+5(6.28e-05)]_34 chrII:13083891-13083971 1.76e-04 14_[+2(4.26e-05)]_58 chrIII:4875868-4875948 1.38e-01 80 chrIII:2805253-2805333 1.54e-03 6_[+2(4.26e-05)]_66 chrIII:2619729-2619809 2.30e-03 9_[+4(4.02e-05)]_9_[+5(3.09e-05)]_\ 46 chrV:6593851-6593931 1.32e-04 38_[+3(3.35e-05)]_21_[+1(2.19e-05)]_\ 5 chrV:10476787-10476867 1.53e-01 19_[+2(4.26e-05)]_53 chrI:12043456-12043536 1.45e-01 80 chrI:1183970-1184050 5.48e-05 6_[+1(1.41e-05)]_13_[+3(7.63e-05)]_\ 45 chrX:1451959-1452039 3.44e-01 80 chrV:18086927-18087007 1.26e-05 14_[+2(7.12e-05)]_3_[+1(1.41e-05)]_\ 47 chrI:13161915-13161995 4.35e-05 36_[+1(4.12e-05)]_13_[+3(8.51e-05)]_\ 15 chrV:20782772-20782852 2.02e-01 80 chrV:3712388-3712468 8.52e-01 80 chrII:15040474-15040554 7.59e-01 80 chrII:7778161-7778241 6.09e-02 80 chrIV:9403965-9404045 2.99e-03 42_[+5(3.09e-05)]_30 chrIII:1533258-1533338 2.83e-04 13_[+1(4.12e-05)]_16_[+3(2.06e-05)]_\ 35 chrIII:9468630-9468710 8.24e-01 80 chrI:1895100-1895180 3.26e-02 42_[+1(7.71e-05)]_30 chrIV:10477926-10478006 7.74e-01 80 chrII:4828218-4828298 5.03e-05 7_[+4(6.76e-05)]_5_[+2(4.26e-05)]_\ 52 chrV:6062-6142 3.07e-01 80 chrII:14035882-14035962 5.89e-01 80 chrIV:291535-291615 2.47e-01 80 chrV:5596523-5596603 1.94e-03 43_[+1(7.71e-05)]_29 chrIII:1208011-1208091 7.70e-07 15_[+1(4.12e-05)]_14_[+5(3.09e-05)]_\ [+3(4.31e-05)]_7_[+2(4.26e-05)]_12 chrV:5204329-5204409 8.67e-05 6_[+4(4.02e-05)]_6_[+2(4.26e-05)]_\ 52 chrI:3600864-3600944 1.25e-04 23_[+1(8.24e-05)]_15_[+3(2.06e-05)]_\ 26 chrIII:8628519-8628599 7.19e-01 80 chrV:14734514-14734594 5.68e-02 80 chrIV:13083506-13083586 1.45e-01 80 chrIII:13563082-13563162 7.10e-01 80 chrIII:7074134-7074214 2.31e-03 80 chrI:14104704-14104784 1.80e-02 80 chrX:7955382-7955462 7.94e-03 34_[+4(4.02e-05)]_38 chrV:6220874-6220954 2.94e-01 80 chrX:1443982-1444062 2.93e-01 80 chrIV:4357445-4357525 3.88e-03 80 chrIV:7632665-7632745 2.27e-02 28_[+3(7.63e-05)]_44 chrM:13130-13210 5.32e-01 80 chrI:1050704-1050784 3.37e-01 80 chrIII:6710168-6710248 7.73e-03 56_[+1(7.71e-05)]_16 chrIII:12152306-12152386 1.58e-03 2_[+2(4.26e-05)]_35_[+3(9.24e-05)]_\ 27 chrI:7660587-7660667 3.42e-02 80 chrV:5939671-5939751 5.65e-03 80 chrIV:8741154-8741234 1.50e-01 80 chrII:5506071-5506151 5.44e-01 80 chrV:15597-15677 6.28e-02 80 chrV:16499153-16499233 4.83e-01 80 chrIV:7396786-7396866 4.99e-01 80 chrII:5501451-5501531 3.99e-02 80 chrI:12920657-12920737 1.29e-01 80 chrIII:5946125-5946205 2.06e-01 80 chrIII:6123850-6123930 4.03e-01 80 chrII:6889500-6889580 5.48e-01 80 chrI:12183272-12183352 3.75e-02 80 chrIII:4153120-4153200 5.00e-02 64_[+4(9.42e-05)]_8 chrIII:6615223-6615303 3.90e-04 [+2(4.26e-05)]_72 chrX:11604656-11604736 9.31e-01 80 chrI:10622880-10622960 7.89e-01 80 chrI:9581584-9581664 1.70e-03 15_[+4(9.42e-05)]_57 chrI:10565991-10566071 3.84e-02 80 chrX:4208683-4208763 3.62e-01 80 chrIV:5188222-5188302 1.26e-01 [+4(6.76e-05)]_72 chrIV:2890713-2890793 3.72e-02 17_[+4(4.02e-05)]_55 chrIV:1459475-1459555 5.44e-03 1_[+2(4.26e-05)]_71 chrIV:11142598-11142678 1.68e-02 64_[+1(2.19e-05)]_8 chrIII:491251-491331 5.01e-04 54_[+1(7.71e-05)]_18 chrIV:9212022-9212102 6.04e-01 80 chrII:8276260-8276340 6.65e-04 8_[+1(2.19e-05)]_64 chrV:4339687-4339767 8.50e-05 9_[+3(2.06e-05)]_63 chrI:4829913-4829993 2.02e-03 34_[+1(7.71e-05)]_19_[+5(6.28e-05)]_\ 11 chrI:3825944-3826024 4.71e-01 80 chrIII:4058031-4058111 7.42e-02 80 chrM:6621-6701 9.96e-01 80 chrV:965027-965107 6.82e-03 1_[+4(4.02e-05)]_71 chrIII:9912696-9912776 5.36e-01 80 chrV:12816480-12816560 1.13e-02 56_[+4(6.76e-05)]_16 chrV:15578521-15578601 2.06e-02 61_[+2(7.12e-05)]_11 chrII:7987034-7987114 2.87e-01 80 chrV:6223846-6223926 2.50e-01 80 chrII:9597993-9598073 3.44e-01 80 chrIII:10905308-10905388 1.69e-01 80 chrIV:6555881-6555961 9.04e-03 80 chrIII:13278282-13278362 2.81e-01 80 chrIII:10093250-10093330 1.15e-02 80 chrV:15184595-15184675 1.94e-01 80 chrV:14355128-14355208 1.62e-01 80 chrX:15983407-15983487 2.31e-01 80 chrI:4765565-4765645 1.07e-03 27_[+1(4.88e-05)]_45 chrX:10004670-10004750 5.48e-01 80 chrI:7081223-7081303 8.19e-01 80 chrII:9706398-9706478 2.89e-02 10_[+3(5.64e-05)]_62 chrX:14164910-14164990 3.11e-02 80 chrX:4148205-4148285 3.06e-01 80 chrIV:7505669-7505749 9.85e-01 80 chrIV:8511235-8511315 4.13e-05 28_[+2(4.26e-05)]_7_[+1(7.71e-05)]_\ 29 chrIII:62535-62615 6.57e-01 80 chrIV:10242889-10242969 1.66e-03 [+3(3.94e-05)]_72 chrI:10591688-10591768 3.99e-03 36_[+1(2.19e-05)]_20_[+1(7.71e-05)]_\ 8 chrV:5275783-5275863 1.86e-02 80 chrV:20717277-20717357 6.36e-01 80 chrV:6043429-6043509 1.25e-04 23_[+2(4.26e-05)]_[+1(2.19e-05)]_41 chrIII:6417930-6418010 6.40e-02 80 chrV:7431390-7431470 4.92e-01 80 chrIII:3866873-3866953 7.56e-01 80 chrIII:8975859-8975939 1.45e-01 80 chrII:5575071-5575151 3.58e-01 80 chrV:11631175-11631255 7.54e-01 80 chrIV:874836-874916 2.06e-03 80 chrIV:9438624-9438704 2.15e-02 80 chrV:12970754-12970834 7.44e-02 80 chrI:3292693-3292773 3.54e-01 80 chrIII:8809690-8809770 7.13e-03 47_[+1(7.71e-05)]_25 chrIII:10325465-10325545 5.65e-02 80 chrIV:6958855-6958935 1.36e-01 80 chrV:11503510-11503590 1.27e-01 80 chrV:10953933-10954013 3.66e-01 80 chrI:7945541-7945621 2.12e-01 80 chrIV:3873401-3873481 4.73e-01 80 chrI:3866591-3866671 1.04e-04 33_[+1(7.71e-05)]_5_[+4(6.76e-05)]_\ 26 chrV:724765-724845 2.06e-01 80 chrI:5811883-5811963 7.73e-04 18_[+4(4.02e-05)]_54 chrM:8749-8829 2.49e-01 80 chrIII:7795452-7795532 9.21e-02 20_[+4(9.42e-05)]_52 chrV:13088718-13088798 3.74e-01 80 chrI:9047941-9048021 2.67e-01 80 chrV:12460823-12460903 4.80e-02 36_[+4(9.42e-05)]_8_[+4(4.02e-05)]_\ 20 chrV:12063172-12063252 8.09e-02 80 chrV:10031534-10031614 1.06e-01 80 chrIII:12534060-12534140 6.39e-05 5_[+2(4.26e-05)]_58_[+5(3.09e-05)]_\ 1 chrII:2204246-2204326 2.88e-03 42_[+3(1.51e-05)]_30 chrX:14819997-14820077 9.82e-01 80 chrV:13312443-13312523 2.22e-02 80 chrI:519957-520037 1.52e-04 43_[+1(5.19e-06)]_29 chrV:1018786-1018866 2.38e-02 80 chrII:6967834-6967914 5.39e-01 80 chrV:11535912-11535992 9.24e-02 80 chrV:6949-7029 4.05e-01 80 chrIV:14790701-14790781 4.08e-01 80 chrIV:9777697-9777777 9.89e-03 64_[+3(2.44e-05)]_8 chrII:6536068-6536148 2.07e-03 80 chrX:1012866-1012946 7.11e-01 80 chrII:15208330-15208410 8.61e-05 19_[+1(2.19e-05)]_35_[+1(9.34e-05)]_\ 10 chrIV:12130938-12131018 3.76e-02 80 chrI:534294-534374 7.34e-04 49_[+3(3.35e-05)]_23 chrIV:7903520-7903600 7.63e-01 80 chrV:12184488-12184568 9.46e-03 3_[+1(9.34e-05)]_69 chrII:10350633-10350713 5.33e-03 52_[+3(7.63e-05)]_20 chrII:7781273-7781353 9.53e-03 33_[+3(3.35e-05)]_39 chrII:6974145-6974225 1.67e-02 8_[+4(9.42e-05)]_1_[+4(4.02e-05)]_\ 55 chrII:11039064-11039144 9.77e-01 80 chrV:9327290-9327370 1.26e-01 80 chrII:10450622-10450702 8.27e-02 80 chrV:9547815-9547895 4.18e-02 80 chrIV:9386155-9386235 1.41e-03 80 chrX:3128453-3128533 3.80e-02 26_[+1(8.76e-05)]_46 chrI:14101172-14101252 6.69e-02 80 chrX:423076-423156 8.52e-01 80 chrX:15604692-15604772 4.52e-02 80 chrX:12168897-12168977 8.29e-01 80 chrII:9242987-9243067 8.77e-02 80 chrX:5976679-5976759 7.97e-02 11_[+1(7.71e-05)]_61 chrIII:3790997-3791077 7.20e-01 80 chrII:8457594-8457674 5.80e-02 80 chrII:9169623-9169703 8.22e-04 39_[+3(2.44e-05)]_13_[+5(3.09e-05)]_\ 12 chrIV:6548766-6548846 5.92e-02 30_[+1(4.12e-05)]_42 chrIV:5731759-5731839 2.24e-03 21_[+3(8.51e-05)]_51 chrII:11022163-11022243 6.79e-04 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chrV:10954324-10954404 2.05e-01 80 chrX:15608820-15608900 4.24e-01 80 chrIV:9319079-9319159 5.25e-01 80 chrV:8031295-8031375 8.09e-02 80 chrII:7776188-7776268 8.37e-01 80 chrIV:3213574-3213654 9.55e-02 25_[+1(4.12e-05)]_47 chrX:7790991-7791071 6.68e-02 80 chrV:4516412-4516492 8.52e-01 80 chrIV:261767-261847 7.68e-03 23_[+1(8.24e-05)]_49 chrIV:2670831-2670911 3.78e-04 43_[+5(6.28e-05)]_6_[+2(4.26e-05)]_\ 15 chrIII:13439579-13439659 7.06e-03 63_[+2(4.26e-05)]_9 chrII:9108610-9108690 2.26e-01 80 chrII:9285691-9285771 3.19e-01 80 chrIII:10210642-10210722 9.34e-01 80 chrIII:10615231-10615311 1.22e-02 80 chrIII:5448332-5448412 7.71e-06 43_[+3(5.70e-06)]_17_[+1(4.12e-05)]_\ 4 chrX:15546412-15546492 2.71e-01 80 chrI:4242538-4242618 7.01e-02 80 chrI:10173244-10173324 9.36e-03 80 chrIII:5719954-5720034 9.37e-02 80 chrIII:6442702-6442782 9.01e-02 80 chrV:11890035-11890115 3.26e-01 80 chrV:13654021-13654101 9.68e-01 80 chrM:422-502 9.79e-01 80 chrV:13256642-13256722 4.30e-02 80 chrX:1504345-1504425 7.37e-02 17_[+4(4.02e-05)]_55 chrIII:2151613-2151693 5.42e-05 19_[+2(7.12e-05)]_53 chrI:12552893-12552973 6.02e-01 80 chrIII:4593480-4593560 8.03e-01 80 chrI:5134182-5134262 5.65e-02 80 chrV:11925062-11925142 2.92e-01 80 chrIII:357720-357800 1.21e-01 13_[+4(4.02e-05)]_59 chrV:12330636-12330716 9.27e-01 80 chrI:15035905-15035985 2.29e-05 18_[+2(4.26e-05)]_31_[+1(1.02e-05)]_\ 15 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n04.farnam.hpc.yale.internal ********************************************************************************