******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/lin-15B.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:3887694-3887774 1.0000 80 chrIII:6289540-6289620 1.0000 80 chrV:10134320-10134400 1.0000 80 chrI:10478247-10478327 1.0000 80 chrIII:5085589-5085669 1.0000 80 chrV:13625768-13625848 1.0000 80 chrIV:1310475-1310555 1.0000 80 chrX:15725725-15725805 1.0000 80 chrIII:9947166-9947246 1.0000 80 chrII:8017366-8017446 1.0000 80 chrV:13880342-13880422 1.0000 80 chrIV:1923888-1923968 1.0000 80 chrIII:10931012-10931092 1.0000 80 chrIII:13484493-13484573 1.0000 80 chrIII:11039394-11039474 1.0000 80 chrI:11839685-11839765 1.0000 80 chrIII:6248234-6248314 1.0000 80 chrI:871968-872048 1.0000 80 chrI:3930580-3930660 1.0000 80 chrII:12604393-12604473 1.0000 80 chrIII:8268483-8268563 1.0000 80 chrII:5501425-5501505 1.0000 80 chrI:1562608-1562688 1.0000 80 chrIII:8490417-8490497 1.0000 80 chrI:7233204-7233284 1.0000 80 chrI:7883947-7884027 1.0000 80 chrI:1514566-1514646 1.0000 80 chrI:7676316-7676396 1.0000 80 chrIV:9948211-9948291 1.0000 80 chrII:8041825-8041905 1.0000 80 chrIII:8838703-8838783 1.0000 80 chrI:4381849-4381929 1.0000 80 chrI:9772635-9772715 1.0000 80 chrI:14662957-14663037 1.0000 80 chrIV:4031198-4031278 1.0000 80 chrIII:8224940-8225020 1.0000 80 chrI:7466711-7466791 1.0000 80 chrIV:3055469-3055549 1.0000 80 chrII:913398-913478 1.0000 80 chrIII:5190807-5190887 1.0000 80 chrII:10172601-10172681 1.0000 80 chrV:17906321-17906401 1.0000 80 chrIII:8829364-8829444 1.0000 80 chrIII:9580624-9580704 1.0000 80 chrIII:424018-424098 1.0000 80 chrI:3192746-3192826 1.0000 80 chrV:10238839-10238919 1.0000 80 chrIV:1328905-1328985 1.0000 80 chrIII:5380123-5380203 1.0000 80 chrI:1601622-1601702 1.0000 80 chrI:13367729-13367809 1.0000 80 chrIV:13453669-13453749 1.0000 80 chrIII:6929714-6929794 1.0000 80 chrIII:10895974-10896054 1.0000 80 chrI:11910011-11910091 1.0000 80 chrV:13757524-13757604 1.0000 80 chrV:5687380-5687460 1.0000 80 chrI:13289860-13289940 1.0000 80 chrIV:17380447-17380527 1.0000 80 chrIV:7774369-7774449 1.0000 80 chrI:14642650-14642730 1.0000 80 chrIV:9932211-9932291 1.0000 80 chrII:1310264-1310344 1.0000 80 chrIII:11565775-11565855 1.0000 80 chrIV:1054905-1054985 1.0000 80 chrII:4959858-4959938 1.0000 80 chrIII:7712091-7712171 1.0000 80 chrV:17870717-17870797 1.0000 80 chrII:10607720-10607800 1.0000 80 chrI:12486919-12486999 1.0000 80 chrI:12956028-12956108 1.0000 80 chrIV:12684512-12684592 1.0000 80 chrIII:9848214-9848294 1.0000 80 chrI:11964998-11965078 1.0000 80 chrIV:17331239-17331319 1.0000 80 chrII:4453531-4453611 1.0000 80 chrI:10192962-10193042 1.0000 80 chrIV:773099-773179 1.0000 80 chrX:9774443-9774523 1.0000 80 chrV:12747564-12747644 1.0000 80 chrI:7643276-7643356 1.0000 80 chrI:8735898-8735978 1.0000 80 chrX:16779032-16779112 1.0000 80 chrIV:17084494-17084574 1.0000 80 chrI:6562509-6562589 1.0000 80 chrII:8162403-8162483 1.0000 80 chrIV:11298647-11298727 1.0000 80 chrI:11930652-11930732 1.0000 80 chrIII:4404514-4404594 1.0000 80 chrIII:11505376-11505456 1.0000 80 chrIII:8009928-8010008 1.0000 80 chrIII:4187021-4187101 1.0000 80 chrIV:12079076-12079156 1.0000 80 chrV:14734509-14734589 1.0000 80 chrI:12773451-12773531 1.0000 80 chrII:7863921-7864001 1.0000 80 chrI:10079627-10079707 1.0000 80 chrI:4386567-4386647 1.0000 80 chrIV:11211030-11211110 1.0000 80 chrV:14597947-14598027 1.0000 80 chrIV:2613249-2613329 1.0000 80 chrIII:4935047-4935127 1.0000 80 chrIV:1309957-1310037 1.0000 80 chrIII:1496013-1496093 1.0000 80 chrV:10338736-10338816 1.0000 80 chrIII:2331384-2331464 1.0000 80 chrIV:10197477-10197557 1.0000 80 chrI:11912906-11912986 1.0000 80 chrIII:11580677-11580757 1.0000 80 chrV:9930788-9930868 1.0000 80 chrIII:5405770-5405850 1.0000 80 chrIV:4357464-4357544 1.0000 80 chrI:12904045-12904125 1.0000 80 chrI:1895087-1895167 1.0000 80 chrIV:12605509-12605589 1.0000 80 chrIII:11139060-11139140 1.0000 80 chrI:8083434-8083514 1.0000 80 chrII:10350620-10350700 1.0000 80 chrI:663641-663721 1.0000 80 chrV:12697508-12697588 1.0000 80 chrIII:1207994-1208074 1.0000 80 chrIV:11522379-11522459 1.0000 80 chrIV:9104478-9104558 1.0000 80 chrIV:3599275-3599355 1.0000 80 chrV:15395092-15395172 1.0000 80 chrII:8143450-8143530 1.0000 80 chrI:2306907-2306987 1.0000 80 chrI:6850037-6850117 1.0000 80 chrIV:3638733-3638813 1.0000 80 chrIII:3735132-3735212 1.0000 80 chrIII:11981759-11981839 1.0000 80 chrI:3865987-3866067 1.0000 80 chrV:18021692-18021772 1.0000 80 chrV:13591659-13591739 1.0000 80 chrIV:10097047-10097127 1.0000 80 chrV:8014125-8014205 1.0000 80 chrIII:2698897-2698977 1.0000 80 chrIII:8717383-8717463 1.0000 80 chrV:6710593-6710673 1.0000 80 chrII:1346438-1346518 1.0000 80 chrV:4169825-4169905 1.0000 80 chrIV:5160344-5160424 1.0000 80 chrIV:12259662-12259742 1.0000 80 chrIII:10203323-10203403 1.0000 80 chrV:3579920-3580000 1.0000 80 chrIII:13152817-13152897 1.0000 80 chrIII:13169630-13169710 1.0000 80 chrI:10730261-10730341 1.0000 80 chrV:1918163-1918243 1.0000 80 chrI:11038884-11038964 1.0000 80 chrIII:9542999-9543079 1.0000 80 chrIII:1540263-1540343 1.0000 80 chrV:7804186-7804266 1.0000 80 chrIV:12089063-12089143 1.0000 80 chrV:2109422-2109502 1.0000 80 chrI:10185754-10185834 1.0000 80 chrIII:8432316-8432396 1.0000 80 chrIII:10635463-10635543 1.0000 80 chrII:14969454-14969534 1.0000 80 chrI:3070214-3070294 1.0000 80 chrIII:8628524-8628604 1.0000 80 chrII:5226475-5226555 1.0000 80 chrI:3600848-3600928 1.0000 80 chrI:8027963-8028043 1.0000 80 chrIII:9747326-9747406 1.0000 80 chrIII:8310406-8310486 1.0000 80 chrIII:8265886-8265966 1.0000 80 chrI:8962055-8962135 1.0000 80 chrI:13814828-13814908 1.0000 80 chrI:7304803-7304883 1.0000 80 chrIII:12821487-12821567 1.0000 80 chrIII:9507918-9507998 1.0000 80 chrV:11733633-11733713 1.0000 80 chrIII:12847722-12847802 1.0000 80 chrI:2642468-2642548 1.0000 80 chrV:12647857-12647937 1.0000 80 chrIII:11847802-11847882 1.0000 80 chrI:489877-489957 1.0000 80 chrIV:12094070-12094150 1.0000 80 chrV:6527069-6527149 1.0000 80 chrIII:12152339-12152419 1.0000 80 chrI:12954722-12954802 1.0000 80 chrV:1049457-1049537 1.0000 80 chrI:7224670-7224750 1.0000 80 chrV:14991010-14991090 1.0000 80 chrV:8302687-8302767 1.0000 80 chrV:3195197-3195277 1.0000 80 chrIV:3533138-3533218 1.0000 80 chrI:14820269-14820349 1.0000 80 chrIII:9228360-9228440 1.0000 80 chrIII:4204230-4204310 1.0000 80 chrII:7781244-7781324 1.0000 80 chrIII:3719711-3719791 1.0000 80 chrX:15922978-15923058 1.0000 80 chrIV:11371801-11371881 1.0000 80 chrV:14546052-14546132 1.0000 80 chrIV:13206057-13206137 1.0000 80 chrII:484534-484614 1.0000 80 chrI:13291019-13291099 1.0000 80 chrIV:12121236-12121316 1.0000 80 chrIV:4184939-4185019 1.0000 80 chrX:3512616-3512696 1.0000 80 chrIII:9571031-9571111 1.0000 80 chrIV:1973517-1973597 1.0000 80 chrIII:12377413-12377493 1.0000 80 chrII:13036846-13036926 1.0000 80 chrII:8138141-8138221 1.0000 80 chrI:3228086-3228166 1.0000 80 chrI:7570744-7570824 1.0000 80 chrIII:1533723-1533803 1.0000 80 chrIII:8899874-8899954 1.0000 80 chrIII:1533235-1533315 1.0000 80 chrII:10820160-10820240 1.0000 80 chrIII:7952255-7952335 1.0000 80 chrI:14185328-14185408 1.0000 80 chrII:8283397-8283477 1.0000 80 chrIII:13771320-13771400 1.0000 80 chrIV:2004961-2005041 1.0000 80 chrII:8964991-8965071 1.0000 80 chrII:4174048-4174128 1.0000 80 chrIV:2666731-2666811 1.0000 80 chrIII:10646241-10646321 1.0000 80 chrII:12237728-12237808 1.0000 80 chrIII:6009165-6009245 1.0000 80 chrX:10681263-10681343 1.0000 80 chrI:3059156-3059236 1.0000 80 chrX:59252-59332 1.0000 80 chrI:3867321-3867401 1.0000 80 chrIII:10114802-10114882 1.0000 80 chrI:3466834-3466914 1.0000 80 chrIV:2664602-2664682 1.0000 80 chrIII:6019919-6019999 1.0000 80 chrI:4788592-4788672 1.0000 80 chrII:2342168-2342248 1.0000 80 chrII:13477385-13477465 1.0000 80 chrX:15860841-15860921 1.0000 80 chrI:14710987-14711067 1.0000 80 chrII:11578494-11578574 1.0000 80 chrI:13284486-13284566 1.0000 80 chrII:9729329-9729409 1.0000 80 chrIV:8205410-8205490 1.0000 80 chrI:3908586-3908666 1.0000 80 chrII:10100050-10100130 1.0000 80 chrIII:2805238-2805318 1.0000 80 chrI:12520497-12520577 1.0000 80 chrIII:12818480-12818560 1.0000 80 chrIV:17421865-17421945 1.0000 80 chrIV:13289503-13289583 1.0000 80 chrIII:9089587-9089667 1.0000 80 chrV:13437667-13437747 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_lin-15B/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/lin-15B.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.274 C 0.226 G 0.23 T 0.27 Background letter frequencies (from file dataset with add-one prior applied): A 0.274 C 0.226 G 0.23 T 0.27 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WRGNGCGC MEME-1 width = 8 sites = 165 llr = 1131 E-value = 1.8e-093 ******************************************************************************** -------------------------------------------------------------------------------- Motif WRGNGCGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4623:::: pos.-specific C 2:13:a:a probability G 1462a:a: matrix T 4112:::: bits 2.1 *** 1.9 **** 1.7 **** 1.5 **** Relative 1.3 **** Entropy 1.1 **** (9.9 bits) 0.9 **** 0.6 ** **** 0.4 ** **** 0.2 *** **** 0.0 -------- Multilevel AAGAGCGC consensus TG C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRGNGCGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:4788592-4788672 38 4.63e-05 CACGTATCAA TAGAGCGC GTTGTCATAA chrIII:10646241-10646321 43 4.63e-05 TGCCTGATGC AAGCGCGC CCCACTGGAC chrV:3195197-3195277 31 4.63e-05 AATCGTAAGC AAGCGCGC TCTATTGAGA chrIII:9542999-9543079 34 4.63e-05 TGCGTAACGA TAGAGCGC GTTTACATCA chrI:10730261-10730341 35 4.63e-05 AGATTATCAG TAGAGCGC ACTTGCTTTT chrIII:13152817-13152897 61 4.63e-05 GCCGCGAAGC AAGCGCGC TCCACTGTAC chrIII:10203323-10203403 38 4.63e-05 TTCGGCGGAA AAGCGCGC TCTACCGAGA chrV:4169825-4169905 26 4.63e-05 CGCTTCGCGT TAGAGCGC GCTTGCAACA chrII:1346438-1346518 30 4.63e-05 CGCGTGTTGC AAGCGCGC TCCAATGATA chrV:6710593-6710673 55 4.63e-05 CGGAGTGTCG TAGCGCGC CTTGTTTATT chrV:13591659-13591739 25 4.63e-05 AAAGGGTGGT AAGCGCGC TCCGTTGCAC chrIII:1207994-1208074 30 4.63e-05 GCAATAATGC AAGCGCGC TCCACTGTAC chrIV:12079076-12079156 9 4.63e-05 TGTTTCCA TAGAGCGC ATTTACACTC chrIII:8009928-8010008 26 4.63e-05 TGGACGACAC AAGCGCGC TCAAGCGGAC chrV:12747564-12747644 26 4.63e-05 TGTACAATGC AAGCGCGC CCCACAGTCA chrII:4959858-4959938 59 4.63e-05 GATGTGACAG TAGAGCGC GCTTGCATAC chrII:1310264-1310344 29 4.63e-05 AACAGGGCGA AAGCGCGC TCTGTTGCAC chrI:14642650-14642730 34 4.63e-05 CACATGACGA TAGAGCGC GTTTGTATAG chrIV:7774369-7774449 44 4.63e-05 CACTTCTCAA TAGAGCGC GTTTGCAGTC chrIII:9580624-9580704 56 4.63e-05 TCTCACGCAT TAGAGCGC ATTTGCGTTG chrII:913398-913478 32 4.63e-05 CCCCTAGCAG TAGAGCGC GTTTACATTC chrI:1514566-1514646 29 4.63e-05 AACATTTTTG AAGCGCGC TGCAAACGCG chrIV:1310475-1310555 35 4.63e-05 ATGGGTGTGC AAGCGCGC CCCATTGCGA chrII:13477385-13477465 16 8.52e-05 TTTTTTCCGG TGGAGCGC ATTTACTGAG chrI:3466834-3466914 59 8.52e-05 TCTTGTGCGA TGGAGCGC GCTTGCTATT chrI:7570744-7570824 34 8.52e-05 ACATTCTCAA TGGAGCGC GCTTGCTCTT chrI:3228086-3228166 4 8.52e-05 CAT TGGAGCGC GTTTGTTGTC chrIII:12377413-12377493 36 8.52e-05 TGATGTTCAA TGGAGCGC GTTTGCCTAG chrIV:13206057-13206137 32 8.52e-05 TGGAGGTCAA TGGAGCGC GTTTGCTCTC chrV:11733633-11733713 51 8.52e-05 ACATTGTCAT TGGAGCGC GCTTTCCCCA chrIII:12821487-12821567 33 8.52e-05 ACGAGAAACA TGGCGCGC ATGCGGGATA chrI:10185754-10185834 34 8.52e-05 AAATATGCAG TGGAGCGC ACTTAATGCG chrIII:1540263-1540343 55 8.52e-05 TGTTTCTCAC TGGAGCGC GCTTGCTCGC chrV:1918163-1918243 31 8.52e-05 AGAAGTGCGG AGGAGCGC GTTTGCTGTG chrIV:5160344-5160424 39 8.52e-05 ATCTTGTCAA TGGAGCGC GCTTACGCAG chrV:8014125-8014205 72 8.52e-05 AGAGTTCGAA TGGAGCGC G chrIV:9104478-9104558 62 8.52e-05 GAGTTAGCAA TGGAGCGC GTTTACGTTC chrI:663641-663721 58 8.52e-05 CGCGTGACGG TGGAGCGC ACTTCCCTCC chrIV:4357464-4357544 25 8.52e-05 tgatgtgcga tggagcgc acttgccaaa chrIII:1496013-1496093 56 8.52e-05 CGGGTCTCAG TGGAGCGC GCTTGCTTTG chrIV:2613249-2613329 69 8.52e-05 CGGTGTGCGA TGGAGCGC AATT chrV:14734509-14734589 35 8.52e-05 TGGTGTGCGG TGGAGCGC AATTACATTA chrIV:773099-773179 33 8.52e-05 ccgagtccag tggagcgc gcttgcattt chrI:11964998-11965078 65 8.52e-05 GAGTGTGCGA TGGAGCGC ATTTGCCG chrI:12486919-12486999 10 8.52e-05 GGTGTGCGG TGGAGCGC GCTTGCACAC chrII:10607720-10607800 24 8.52e-05 ATGTTCGCAT TGGAGCGC ACTTGCTGGC chrIII:11565775-11565855 32 8.52e-05 CTATTATCGG TGGAGCGC GCATGCTTTT chrIV:13453669-13453749 47 8.52e-05 GCGTTCTCAA TGGAGCGC GCTTGCTGAC chrI:3192746-3192826 29 8.52e-05 AGTTGTTCGG TGGAGCGC GTTTGCTTTT chrIII:424018-424098 60 8.52e-05 AGTTTCTCAA TGGAGCGC GCTTGCGTTT chrIV:3055469-3055549 33 8.52e-05 TAATTAGCCA TGGAGCGC GTATGCTCGC chrI:7466711-7466791 39 8.52e-05 TTCGTATCAC TGGAGCGC AGTTGCATAT chrIII:8838703-8838783 72 8.52e-05 TGGATTGGTT TGGCGCGC G chrI:871968-872048 43 8.52e-05 CAATTCGCAA TGGAGCGC GATTGCATAT chrI:3908586-3908666 7 1.10e-04 GTCAAA TAGTGCGC ATTGGGCGCG chrIV:11371801-11371881 36 1.10e-04 AACAGGGAGT AAGTGCGC TCCTTTGCAC chrII:7781244-7781324 34 1.10e-04 AAAAACATGC AAGTGCGC TCTATCGTGA chrI:13814828-13814908 43 1.10e-04 ATGAGGCAGT AAGTGCGC TCCACGGACA chrII:14969454-14969534 58 1.10e-04 GCAGACGAGA AAGTGCGC TCCATTGCAA chrIV:12089063-12089143 28 1.10e-04 TGGATTCGTC AAGTGCGC CCCACTGAGA chrV:15395092-15395172 7 1.10e-04 AAATGC AAGTGCGC TCTGCCGAAC chrIII:11505376-11505456 29 1.10e-04 CAGAAATCGC AAGTGCGC TCCATTGGAC chrI:6562509-6562589 36 1.10e-04 TGTGCGCTGC AAGTGCGC CCCTTTGAAC chrIV:17331239-17331319 64 1.10e-04 TAGAAGAGGA AAGTGCGC TCCAGCGTC chrIII:9848214-9848294 42 1.10e-04 AAGAAATTGC AAGTGCGC TCAATTGAAA chrIV:1328905-1328985 19 1.10e-04 AAAACAATGC AAGTGCGC TCCATCGCAC chrI:4381849-4381929 23 1.10e-04 TGGGGAATGG AAGTGCGC TCTAATGGAC chrI:7233204-7233284 19 1.10e-04 ATATAAATGA AAGTGCGC TCTACGGAGA chrIII:13771320-13771400 54 1.32e-04 ACGCTTGCCA TAGGGCGC ACATGACTGC chrV:14546052-14546132 19 1.32e-04 GATACTTCGA AAGGGCGC ATTTGCACAC chrX:15922978-15923058 25 1.32e-04 AATATTGCAT TAGGGCGC GGTTGCGATC chrIV:3599275-3599355 62 1.32e-04 CGGTGTTAGG TAGGGCGC GCTTGCATTA chrX:9774443-9774523 33 1.32e-04 CATTGTTCGG TAGGGCGC GCTTGCATTT chrIII:2805238-2805318 54 1.90e-04 ATTTTCTCAA TGGGGCGC ACTTGCATTT chrII:4174048-4174128 52 1.90e-04 ATCTCTTCAT TGGGGCGC AAATGCAACA chrII:8964991-8965071 45 1.90e-04 CGTTTTCCGT CAGAGCGC AACTGCGGCA chrII:13036846-13036926 54 1.90e-04 AGTAGTGCGG TGGGGCGC ACTTGCACAA chrIV:12121236-12121316 49 1.90e-04 CATGTAGCAA CAGAGCGC ACCTGCATTG chrI:2642468-2642548 31 1.90e-04 tgaaccaccg tgGGGCGC ATTAATTTGA chrV:17870717-17870797 40 1.90e-04 TCGTTCTCAA TGGGGCGC ACTTGCACCA chrIV:17380447-17380527 51 1.90e-04 AGAAGTGCGG CAGAGCGC TCTTGCATTG chrI:10478247-10478327 51 1.90e-04 TGTGTGGCGG AGGGGCGC ACTTTCATGT chrI:3865987-3866067 68 2.06e-04 CATTGTACAA CGGAGCGC GTTTG chrIV:17084494-17084574 17 2.06e-04 AGTACACGCC CGGCGCGC CGCAGGGTTG chrV:17906321-17906401 59 2.06e-04 GAACCTGGCG CGGCGCGC GTCGGGCAGC chrIII:10931012-10931092 41 2.06e-04 GGGTTCGCAA CGGAGCGC ACATGCTGAC chrV:10134320-10134400 49 2.06e-04 GCATGTCTGA CGGAGCGC ACTTGCACTT chrIII:12152339-12152419 12 2.25e-04 GTTTTATCAA CAGGGCGC GTTTGCACTT chrIII:3735132-3735212 51 2.25e-04 GAGAGTGCGG CAGGGCGC AATTGCATTT chrIV:1054905-1054985 27 2.25e-04 TTACGGTAAA CAGGGCGC GCTGCGGGAT chrV:6527069-6527149 3 2.41e-04 AT CGGGGCGC ACACACATAC chrII:4453531-4453611 7 2.41e-04 CGCGCG CGGGGCGC CAAATTCAAA chrIII:1533235-1533315 34 2.96e-04 TTGCCAATGC AAACGCGC TCCATTGAGA chrIV:4184939-4185019 60 2.96e-04 CTCGACGAGT AAACGCGC TCCATTGAAC chrIII:9228360-9228440 40 2.96e-04 CAGACCAAAC AAACGCGC TCCATCGGAA chrI:3600848-3600928 37 2.96e-04 AATGGGAGGA AAACGCGC CCCATCGCAC chrV:12697508-12697588 13 2.96e-04 ACAATGTTGG AAACGCGC TCCACGGAAC chrV:5687380-5687460 23 2.96e-04 TTTTTGAGGA AAACGCGC TCCAGTGACA chrV:10238839-10238919 8 2.96e-04 GAGTGAG AAACGCGC GATAAACGAA chrIV:1923888-1923968 35 2.96e-04 AGCCGAATGC AAACGCGC TCCACCGCAC chrIII:8432316-8432396 25 3.16e-04 TTACGATAAA GAGAGCGC GCTGTCGTTA chrII:12604393-12604473 67 3.16e-04 GATGTAAAAA GAGAGCGC ACGAAA chrI:8083434-8083514 31 4.08e-04 GTGGAAATGC AACCGCGC TCCATTGGGC chrI:3867321-3867401 29 4.54e-04 CAACCCATCC AAATGCGC GGTCTCTCGC chrIV:2004961-2005041 52 4.54e-04 GTCAAATCGC AAATGCGC TCCACAGAGA chrII:8138141-8138221 29 4.54e-04 ATTCGAAAGC AAATGCGC CCCAAGGAGA chrI:7224670-7224750 48 4.54e-04 TCAAATGAGG AAATGCGC TCTATCGCAC chrIII:8628524-8628604 35 4.54e-04 GTGAGTGTGC AAATGCGC GTAATGGTGT chrV:7804186-7804266 12 4.54e-04 AGTTTTTGTC AAATGCGC TCCATCGTAC chrIII:11039394-11039474 4 4.54e-04 GCC AAATGCGC TCCACTGCGA chrIII:8717383-8717463 24 5.74e-04 CTTGCAACTT TGCCGCGC TAAACAACAC chrIV:11522379-11522459 73 5.74e-04 AGTTGTCATC TTGCGCGC chrI:1895087-1895167 55 5.74e-04 CGGAGTGTCG TTGCGCGC CGTAAATCCA chrI:14820269-14820349 36 6.32e-04 AAAATAATGC AACTGCGC TCCTCCGTAC chrIII:11847802-11847882 24 6.32e-04 ACAATTCGGG GAGGGCGC TTTGTACGCA chrIII:2698897-2698977 35 6.32e-04 CGGGAAATGC AACTGCGC TCCATTGCTA chrIV:12605509-12605589 60 6.32e-04 CAGCGAGTGC AACTGCGC TCCACCGGAT chrIII:10895974-10896054 62 6.32e-04 GCAGAGATAA GAGGGCGC CAGAGAAGTT chrIV:8205410-8205490 34 7.06e-04 TTGCGTAATA AGAGGCGC AGAGATAACA chrX:15860841-15860921 30 7.06e-04 GAATTCTCAA TGAGGCGC GTTTGCTTCA chrIII:3719711-3719791 30 7.06e-04 AATTTGGTGC AACGGCGC TCCTTTGGCA chrI:11038884-11038964 47 7.06e-04 TTACGGTAAA CAACGCGC ACTAGCGGGA chrIII:8224940-8225020 16 7.06e-04 TAATGCTAAA CAACGCGC GCTACGACAC chrV:13880342-13880422 56 7.06e-04 AACATACAGC AACGGCGC TCTGTGGAGA chrV:12647857-12647937 5 7.59e-04 agca agctgcgc cgcgccgcgg chrIII:10635463-10635543 57 7.59e-04 GGTCAGCACC AGCTGCGC GGTAAATTGA chrI:11912906-11912986 18 7.59e-04 ATCTGTGCAT TTGTGCGC GGCGGTGTAT chrIII:6929714-6929794 19 7.59e-04 GATGGTATGA ATGTGCGC TCTAATGAAC chrIII:5190807-5190887 23 7.59e-04 AGCTACATAC ATGTGCGC TCTACTGATA chrI:11839685-11839765 60 7.59e-04 GGTAGGGGAA AGCTGCGC GCCGGAGGGA chrX:15725725-15725805 7 8.36e-04 CCGCAA CACCGCGC GTTGCGGTCG chrIII:12818480-12818560 56 8.94e-04 TTACGGTAAA CAAGGCGC GACATCGGAA chrV:8302687-8302767 28 8.94e-04 AAACGCTAAA CAAGGCGC GGTGTGGAAT chrI:7304803-7304883 13 8.94e-04 TAAAAATAAA CAAGGCGC ATTACGATGC chrI:8027963-8028043 21 8.94e-04 AGAAAACTTT CAAGGCGC ATGAAGAATG chrIV:1309957-1310037 40 8.94e-04 TCCGAAATCC CGCCGCGC GTGTTGTTTA chrI:11930652-11930732 46 8.94e-04 CTGCGAGACC CGCCGCGC GTTTGGCCTC chrI:9772635-9772715 56 8.94e-04 GACGCGTGAC CGCAGCGC GGCCAAAAGT chrI:14710987-14711067 27 9.69e-04 TGAGCAATGC AATCGCGC CCCACCGCTA chrIII:6019919-6019999 62 9.69e-04 CACACTGTCT CACTGCGC GAGGGTTTTT chrII:10820160-10820240 22 9.69e-04 TTTCAAGAGC AATCGCGC TCGGTTGCCA chrIII:2331384-2331464 45 9.69e-04 CGAGTTATGC AATCGCGC CCCATCGCAC chrI:10079627-10079707 21 9.69e-04 AACGCAATGC AATCGCGC TCTATCGACG chrI:8735898-8735978 41 9.69e-04 GGGAACCAGT AATCGCGC TCTAATGATA chrV:9930788-9930868 23 1.05e-03 GTTGCGGTGT CTGTGCGC GGCGGTTGCA chrIII:9089587-9089667 28 1.12e-03 CTTGACTAAA CTGGGCGC ACGCGGGATA chrIII:1533723-1533803 28 1.12e-03 TTGACTCTGC AATTGCGC TCCATTGCTA chrV:14991010-14991090 25 1.12e-03 GACACTCCAC TATTGCGC CCGCGTGTTG chrIII:4404514-4404594 6 1.12e-03 TGTGC AATTGCGC CCCCTTGAGA chrV:13437667-13437747 12 1.21e-03 CCAAAATGAC GGAAGCGC GAATTGTTTA chrIII:5405770-5405850 9 1.21e-03 AAAATAGC GACCGCGC TCTGTTGACA chrIII:5380123-5380203 23 1.21e-03 GTTGGTGCGG GGAAGCGC ATTTGCTGAC chrI:12956028-12956108 34 1.32e-03 AAGGCACTAG GAATGCGC CAAGGCAATA chrIII:7712091-7712171 51 1.32e-03 ACACCTTATC TTACGCGC AAGTTGGATA chrIV:13289503-13289583 47 1.36e-03 GAATCTGCAC GGCCGCGC GCGCGTGCAG chrI:7643276-7643356 34 1.45e-03 AACGGAGTGT CGTAGCGC GTGTTGTTTA chrII:8041825-8041905 25 1.61e-03 TCCGTTTGAA TTCTGCGC CTCTCTGGAG chrIII:6289540-6289620 65 1.61e-03 GTGTTGCAGG GTGGGCGC CAATTCAA chrI:12904045-12904125 52 1.67e-03 ATCACGCTCC ATCGGCGC AGAATCGATA chrX:16779032-16779112 33 1.67e-03 TGCATTCAAA CTACGCGC CCGATCGCCA chrIII:7952255-7952335 58 1.72e-03 TCCATAAAAC TAGCGCGA ATTCAAAAAA chrII:7863921-7864001 33 1.76e-03 tggtcgcatt ctccgcgc cgagacccat chrII:10350620-10350700 67 1.82e-03 ATGCGACTTT TGGAGCGA AATTCA chrII:8162403-8162483 64 1.82e-03 TAATTGTCAA TGGAGCGA ACATACATC chrIII:4935047-4935127 32 2.27e-03 CCGAAATTCC GTATGCGC GTGTTGTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRGNGCGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:4788592-4788672 4.6e-05 37_[+1]_35 chrIII:10646241-10646321 4.6e-05 42_[+1]_30 chrV:3195197-3195277 4.6e-05 30_[+1]_42 chrIII:9542999-9543079 4.6e-05 33_[+1]_39 chrI:10730261-10730341 4.6e-05 34_[+1]_38 chrIII:13152817-13152897 4.6e-05 60_[+1]_12 chrIII:10203323-10203403 4.6e-05 37_[+1]_35 chrV:4169825-4169905 4.6e-05 25_[+1]_47 chrII:1346438-1346518 4.6e-05 29_[+1]_43 chrV:6710593-6710673 4.6e-05 54_[+1]_18 chrV:13591659-13591739 4.6e-05 24_[+1]_48 chrIII:1207994-1208074 4.6e-05 29_[+1]_43 chrIV:12079076-12079156 4.6e-05 8_[+1]_64 chrIII:8009928-8010008 4.6e-05 25_[+1]_47 chrV:12747564-12747644 4.6e-05 25_[+1]_47 chrII:4959858-4959938 4.6e-05 58_[+1]_14 chrII:1310264-1310344 4.6e-05 28_[+1]_44 chrI:14642650-14642730 4.6e-05 33_[+1]_39 chrIV:7774369-7774449 4.6e-05 43_[+1]_29 chrIII:9580624-9580704 4.6e-05 55_[+1]_17 chrII:913398-913478 4.6e-05 31_[+1]_41 chrI:1514566-1514646 4.6e-05 28_[+1]_44 chrIV:1310475-1310555 4.6e-05 34_[+1]_38 chrII:13477385-13477465 8.5e-05 15_[+1]_57 chrI:3466834-3466914 8.5e-05 58_[+1]_14 chrI:7570744-7570824 8.5e-05 33_[+1]_39 chrI:3228086-3228166 8.5e-05 3_[+1]_69 chrIII:12377413-12377493 8.5e-05 35_[+1]_37 chrIV:13206057-13206137 8.5e-05 31_[+1]_41 chrV:11733633-11733713 8.5e-05 50_[+1]_22 chrIII:12821487-12821567 8.5e-05 32_[+1]_40 chrI:10185754-10185834 8.5e-05 33_[+1]_39 chrIII:1540263-1540343 8.5e-05 54_[+1]_18 chrV:1918163-1918243 8.5e-05 30_[+1]_42 chrIV:5160344-5160424 8.5e-05 38_[+1]_34 chrV:8014125-8014205 8.5e-05 71_[+1]_1 chrIV:9104478-9104558 8.5e-05 61_[+1]_11 chrI:663641-663721 8.5e-05 57_[+1]_15 chrIV:4357464-4357544 8.5e-05 24_[+1]_48 chrIII:1496013-1496093 8.5e-05 55_[+1]_17 chrIV:2613249-2613329 8.5e-05 68_[+1]_4 chrV:14734509-14734589 8.5e-05 34_[+1]_38 chrIV:773099-773179 8.5e-05 32_[+1]_40 chrI:11964998-11965078 8.5e-05 64_[+1]_8 chrI:12486919-12486999 8.5e-05 9_[+1]_63 chrII:10607720-10607800 8.5e-05 23_[+1]_49 chrIII:11565775-11565855 8.5e-05 31_[+1]_41 chrIV:13453669-13453749 8.5e-05 46_[+1]_26 chrI:3192746-3192826 8.5e-05 28_[+1]_44 chrIII:424018-424098 8.5e-05 59_[+1]_13 chrIV:3055469-3055549 8.5e-05 32_[+1]_40 chrI:7466711-7466791 8.5e-05 38_[+1]_34 chrIII:8838703-8838783 8.5e-05 71_[+1]_1 chrI:871968-872048 8.5e-05 42_[+1]_30 chrI:3908586-3908666 0.00011 6_[+1]_66 chrIV:11371801-11371881 0.00011 35_[+1]_37 chrII:7781244-7781324 0.00011 33_[+1]_39 chrI:13814828-13814908 0.00011 42_[+1]_30 chrII:14969454-14969534 0.00011 57_[+1]_15 chrIV:12089063-12089143 0.00011 27_[+1]_45 chrV:15395092-15395172 0.00011 6_[+1]_66 chrIII:11505376-11505456 0.00011 28_[+1]_44 chrI:6562509-6562589 0.00011 35_[+1]_37 chrIV:17331239-17331319 0.00011 63_[+1]_9 chrIII:9848214-9848294 0.00011 41_[+1]_31 chrIV:1328905-1328985 0.00011 18_[+1]_54 chrI:4381849-4381929 0.00011 22_[+1]_50 chrI:7233204-7233284 0.00011 18_[+1]_54 chrIII:13771320-13771400 0.00013 53_[+1]_19 chrV:14546052-14546132 0.00013 18_[+1]_54 chrX:15922978-15923058 0.00013 24_[+1]_48 chrIV:3599275-3599355 0.00013 61_[+1]_11 chrX:9774443-9774523 0.00013 32_[+1]_40 chrIII:2805238-2805318 0.00019 53_[+1]_19 chrII:4174048-4174128 0.00019 51_[+1]_21 chrII:8964991-8965071 0.00019 44_[+1]_28 chrII:13036846-13036926 0.00019 53_[+1]_19 chrIV:12121236-12121316 0.00019 48_[+1]_24 chrI:2642468-2642548 0.00019 30_[+1]_42 chrV:17870717-17870797 0.00019 39_[+1]_33 chrIV:17380447-17380527 0.00019 50_[+1]_22 chrI:10478247-10478327 0.00019 50_[+1]_22 chrI:3865987-3866067 0.00021 67_[+1]_5 chrIV:17084494-17084574 0.00021 16_[+1]_56 chrV:17906321-17906401 0.00021 58_[+1]_14 chrIII:10931012-10931092 0.00021 40_[+1]_32 chrV:10134320-10134400 0.00021 48_[+1]_24 chrIII:12152339-12152419 0.00023 11_[+1]_61 chrIII:3735132-3735212 0.00023 50_[+1]_22 chrIV:1054905-1054985 0.00023 26_[+1]_46 chrV:6527069-6527149 0.00024 2_[+1]_70 chrII:4453531-4453611 0.00024 6_[+1]_66 chrIII:1533235-1533315 0.0003 33_[+1]_39 chrIV:4184939-4185019 0.0003 59_[+1]_13 chrIII:9228360-9228440 0.0003 39_[+1]_33 chrI:3600848-3600928 0.0003 36_[+1]_36 chrV:12697508-12697588 0.0003 12_[+1]_60 chrV:5687380-5687460 0.0003 22_[+1]_50 chrV:10238839-10238919 0.0003 7_[+1]_65 chrIV:1923888-1923968 0.0003 34_[+1]_38 chrIII:8432316-8432396 0.00032 24_[+1]_48 chrII:12604393-12604473 0.00032 66_[+1]_6 chrI:8083434-8083514 0.00041 30_[+1]_42 chrI:3867321-3867401 0.00045 28_[+1]_44 chrIV:2004961-2005041 0.00045 51_[+1]_21 chrII:8138141-8138221 0.00045 28_[+1]_44 chrI:7224670-7224750 0.00045 47_[+1]_25 chrIII:8628524-8628604 0.00045 34_[+1]_38 chrV:7804186-7804266 0.00045 11_[+1]_61 chrIII:11039394-11039474 0.00045 3_[+1]_69 chrIII:8717383-8717463 0.00057 23_[+1]_49 chrIV:11522379-11522459 0.00057 72_[+1] chrI:1895087-1895167 0.00057 54_[+1]_18 chrI:14820269-14820349 0.00063 35_[+1]_37 chrIII:11847802-11847882 0.00063 23_[+1]_49 chrIII:2698897-2698977 0.00063 34_[+1]_38 chrIV:12605509-12605589 0.00063 59_[+1]_13 chrIII:10895974-10896054 0.00063 61_[+1]_11 chrIV:8205410-8205490 0.00071 33_[+1]_39 chrX:15860841-15860921 0.00071 29_[+1]_43 chrIII:3719711-3719791 0.00071 29_[+1]_43 chrI:11038884-11038964 0.00071 46_[+1]_26 chrIII:8224940-8225020 0.00071 15_[+1]_57 chrV:13880342-13880422 0.00071 55_[+1]_17 chrV:12647857-12647937 0.00076 4_[+1]_68 chrIII:10635463-10635543 0.00076 56_[+1]_16 chrI:11912906-11912986 0.00076 17_[+1]_55 chrIII:6929714-6929794 0.00076 18_[+1]_54 chrIII:5190807-5190887 0.00076 22_[+1]_50 chrI:11839685-11839765 0.00076 59_[+1]_13 chrX:15725725-15725805 0.00084 6_[+1]_66 chrIII:12818480-12818560 0.00089 55_[+1]_17 chrV:8302687-8302767 0.00089 27_[+1]_45 chrI:7304803-7304883 0.00089 12_[+1]_60 chrI:8027963-8028043 0.00089 20_[+1]_52 chrIV:1309957-1310037 0.00089 39_[+1]_33 chrI:11930652-11930732 0.00089 45_[+1]_27 chrI:9772635-9772715 0.00089 55_[+1]_17 chrI:14710987-14711067 0.00097 26_[+1]_46 chrIII:6019919-6019999 0.00097 61_[+1]_11 chrII:10820160-10820240 0.00097 21_[+1]_51 chrIII:2331384-2331464 0.00097 44_[+1]_28 chrI:10079627-10079707 0.00097 20_[+1]_52 chrI:8735898-8735978 0.00097 40_[+1]_32 chrV:9930788-9930868 0.0011 22_[+1]_50 chrIII:9089587-9089667 0.0011 27_[+1]_45 chrIII:1533723-1533803 0.0011 27_[+1]_45 chrV:14991010-14991090 0.0011 24_[+1]_48 chrIII:4404514-4404594 0.0011 5_[+1]_67 chrV:13437667-13437747 0.0012 11_[+1]_61 chrIII:5405770-5405850 0.0012 8_[+1]_64 chrIII:5380123-5380203 0.0012 22_[+1]_50 chrI:12956028-12956108 0.0013 33_[+1]_39 chrIII:7712091-7712171 0.0013 50_[+1]_22 chrIV:13289503-13289583 0.0014 46_[+1]_26 chrI:7643276-7643356 0.0014 33_[+1]_39 chrII:8041825-8041905 0.0016 24_[+1]_48 chrIII:6289540-6289620 0.0016 64_[+1]_8 chrI:12904045-12904125 0.0017 51_[+1]_21 chrX:16779032-16779112 0.0017 32_[+1]_40 chrIII:7952255-7952335 0.0017 57_[+1]_15 chrII:7863921-7864001 0.0018 32_[+1]_40 chrII:10350620-10350700 0.0018 66_[+1]_6 chrII:8162403-8162483 0.0018 63_[+1]_9 chrIII:4935047-4935127 0.0023 31_[+1]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRGNGCGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WRGNGCGC width=8 seqs=165 chrI:4788592-4788672 ( 38) TAGAGCGC 1 chrIII:10646241-10646321 ( 43) AAGCGCGC 1 chrV:3195197-3195277 ( 31) AAGCGCGC 1 chrIII:9542999-9543079 ( 34) TAGAGCGC 1 chrI:10730261-10730341 ( 35) TAGAGCGC 1 chrIII:13152817-13152897 ( 61) AAGCGCGC 1 chrIII:10203323-10203403 ( 38) AAGCGCGC 1 chrV:4169825-4169905 ( 26) TAGAGCGC 1 chrII:1346438-1346518 ( 30) AAGCGCGC 1 chrV:6710593-6710673 ( 55) TAGCGCGC 1 chrV:13591659-13591739 ( 25) AAGCGCGC 1 chrIII:1207994-1208074 ( 30) AAGCGCGC 1 chrIV:12079076-12079156 ( 9) TAGAGCGC 1 chrIII:8009928-8010008 ( 26) AAGCGCGC 1 chrV:12747564-12747644 ( 26) AAGCGCGC 1 chrII:4959858-4959938 ( 59) TAGAGCGC 1 chrII:1310264-1310344 ( 29) AAGCGCGC 1 chrI:14642650-14642730 ( 34) TAGAGCGC 1 chrIV:7774369-7774449 ( 44) TAGAGCGC 1 chrIII:9580624-9580704 ( 56) TAGAGCGC 1 chrII:913398-913478 ( 32) TAGAGCGC 1 chrI:1514566-1514646 ( 29) AAGCGCGC 1 chrIV:1310475-1310555 ( 35) AAGCGCGC 1 chrII:13477385-13477465 ( 16) TGGAGCGC 1 chrI:3466834-3466914 ( 59) TGGAGCGC 1 chrI:7570744-7570824 ( 34) TGGAGCGC 1 chrI:3228086-3228166 ( 4) TGGAGCGC 1 chrIII:12377413-12377493 ( 36) TGGAGCGC 1 chrIV:13206057-13206137 ( 32) TGGAGCGC 1 chrV:11733633-11733713 ( 51) TGGAGCGC 1 chrIII:12821487-12821567 ( 33) TGGCGCGC 1 chrI:10185754-10185834 ( 34) TGGAGCGC 1 chrIII:1540263-1540343 ( 55) TGGAGCGC 1 chrV:1918163-1918243 ( 31) AGGAGCGC 1 chrIV:5160344-5160424 ( 39) TGGAGCGC 1 chrV:8014125-8014205 ( 72) TGGAGCGC 1 chrIV:9104478-9104558 ( 62) TGGAGCGC 1 chrI:663641-663721 ( 58) TGGAGCGC 1 chrIV:4357464-4357544 ( 25) TGGAGCGC 1 chrIII:1496013-1496093 ( 56) TGGAGCGC 1 chrIV:2613249-2613329 ( 69) TGGAGCGC 1 chrV:14734509-14734589 ( 35) TGGAGCGC 1 chrIV:773099-773179 ( 33) TGGAGCGC 1 chrI:11964998-11965078 ( 65) TGGAGCGC 1 chrI:12486919-12486999 ( 10) TGGAGCGC 1 chrII:10607720-10607800 ( 24) TGGAGCGC 1 chrIII:11565775-11565855 ( 32) TGGAGCGC 1 chrIV:13453669-13453749 ( 47) TGGAGCGC 1 chrI:3192746-3192826 ( 29) TGGAGCGC 1 chrIII:424018-424098 ( 60) TGGAGCGC 1 chrIV:3055469-3055549 ( 33) TGGAGCGC 1 chrI:7466711-7466791 ( 39) TGGAGCGC 1 chrIII:8838703-8838783 ( 72) TGGCGCGC 1 chrI:871968-872048 ( 43) TGGAGCGC 1 chrI:3908586-3908666 ( 7) TAGTGCGC 1 chrIV:11371801-11371881 ( 36) AAGTGCGC 1 chrII:7781244-7781324 ( 34) AAGTGCGC 1 chrI:13814828-13814908 ( 43) AAGTGCGC 1 chrII:14969454-14969534 ( 58) AAGTGCGC 1 chrIV:12089063-12089143 ( 28) AAGTGCGC 1 chrV:15395092-15395172 ( 7) AAGTGCGC 1 chrIII:11505376-11505456 ( 29) AAGTGCGC 1 chrI:6562509-6562589 ( 36) AAGTGCGC 1 chrIV:17331239-17331319 ( 64) AAGTGCGC 1 chrIII:9848214-9848294 ( 42) AAGTGCGC 1 chrIV:1328905-1328985 ( 19) AAGTGCGC 1 chrI:4381849-4381929 ( 23) AAGTGCGC 1 chrI:7233204-7233284 ( 19) AAGTGCGC 1 chrIII:13771320-13771400 ( 54) TAGGGCGC 1 chrV:14546052-14546132 ( 19) AAGGGCGC 1 chrX:15922978-15923058 ( 25) TAGGGCGC 1 chrIV:3599275-3599355 ( 62) TAGGGCGC 1 chrX:9774443-9774523 ( 33) TAGGGCGC 1 chrIII:2805238-2805318 ( 54) TGGGGCGC 1 chrII:4174048-4174128 ( 52) TGGGGCGC 1 chrII:8964991-8965071 ( 45) CAGAGCGC 1 chrII:13036846-13036926 ( 54) TGGGGCGC 1 chrIV:12121236-12121316 ( 49) CAGAGCGC 1 chrI:2642468-2642548 ( 31) TGGGGCGC 1 chrV:17870717-17870797 ( 40) TGGGGCGC 1 chrIV:17380447-17380527 ( 51) CAGAGCGC 1 chrI:10478247-10478327 ( 51) AGGGGCGC 1 chrI:3865987-3866067 ( 68) CGGAGCGC 1 chrIV:17084494-17084574 ( 17) CGGCGCGC 1 chrV:17906321-17906401 ( 59) CGGCGCGC 1 chrIII:10931012-10931092 ( 41) CGGAGCGC 1 chrV:10134320-10134400 ( 49) CGGAGCGC 1 chrIII:12152339-12152419 ( 12) CAGGGCGC 1 chrIII:3735132-3735212 ( 51) CAGGGCGC 1 chrIV:1054905-1054985 ( 27) CAGGGCGC 1 chrV:6527069-6527149 ( 3) CGGGGCGC 1 chrII:4453531-4453611 ( 7) CGGGGCGC 1 chrIII:1533235-1533315 ( 34) AAACGCGC 1 chrIV:4184939-4185019 ( 60) AAACGCGC 1 chrIII:9228360-9228440 ( 40) AAACGCGC 1 chrI:3600848-3600928 ( 37) AAACGCGC 1 chrV:12697508-12697588 ( 13) AAACGCGC 1 chrV:5687380-5687460 ( 23) AAACGCGC 1 chrV:10238839-10238919 ( 8) AAACGCGC 1 chrIV:1923888-1923968 ( 35) AAACGCGC 1 chrIII:8432316-8432396 ( 25) GAGAGCGC 1 chrII:12604393-12604473 ( 67) GAGAGCGC 1 chrI:8083434-8083514 ( 31) AACCGCGC 1 chrI:3867321-3867401 ( 29) AAATGCGC 1 chrIV:2004961-2005041 ( 52) AAATGCGC 1 chrII:8138141-8138221 ( 29) AAATGCGC 1 chrI:7224670-7224750 ( 48) AAATGCGC 1 chrIII:8628524-8628604 ( 35) AAATGCGC 1 chrV:7804186-7804266 ( 12) AAATGCGC 1 chrIII:11039394-11039474 ( 4) AAATGCGC 1 chrIII:8717383-8717463 ( 24) TGCCGCGC 1 chrIV:11522379-11522459 ( 73) TTGCGCGC 1 chrI:1895087-1895167 ( 55) TTGCGCGC 1 chrI:14820269-14820349 ( 36) AACTGCGC 1 chrIII:11847802-11847882 ( 24) GAGGGCGC 1 chrIII:2698897-2698977 ( 35) AACTGCGC 1 chrIV:12605509-12605589 ( 60) AACTGCGC 1 chrIII:10895974-10896054 ( 62) GAGGGCGC 1 chrIV:8205410-8205490 ( 34) AGAGGCGC 1 chrX:15860841-15860921 ( 30) TGAGGCGC 1 chrIII:3719711-3719791 ( 30) AACGGCGC 1 chrI:11038884-11038964 ( 47) CAACGCGC 1 chrIII:8224940-8225020 ( 16) CAACGCGC 1 chrV:13880342-13880422 ( 56) AACGGCGC 1 chrV:12647857-12647937 ( 5) AGCTGCGC 1 chrIII:10635463-10635543 ( 57) AGCTGCGC 1 chrI:11912906-11912986 ( 18) TTGTGCGC 1 chrIII:6929714-6929794 ( 19) ATGTGCGC 1 chrIII:5190807-5190887 ( 23) ATGTGCGC 1 chrI:11839685-11839765 ( 60) AGCTGCGC 1 chrX:15725725-15725805 ( 7) CACCGCGC 1 chrIII:12818480-12818560 ( 56) CAAGGCGC 1 chrV:8302687-8302767 ( 28) CAAGGCGC 1 chrI:7304803-7304883 ( 13) CAAGGCGC 1 chrI:8027963-8028043 ( 21) CAAGGCGC 1 chrIV:1309957-1310037 ( 40) CGCCGCGC 1 chrI:11930652-11930732 ( 46) CGCCGCGC 1 chrI:9772635-9772715 ( 56) CGCAGCGC 1 chrI:14710987-14711067 ( 27) AATCGCGC 1 chrIII:6019919-6019999 ( 62) CACTGCGC 1 chrII:10820160-10820240 ( 22) AATCGCGC 1 chrIII:2331384-2331464 ( 45) AATCGCGC 1 chrI:10079627-10079707 ( 21) AATCGCGC 1 chrI:8735898-8735978 ( 41) AATCGCGC 1 chrV:9930788-9930868 ( 23) CTGTGCGC 1 chrIII:9089587-9089667 ( 28) CTGGGCGC 1 chrIII:1533723-1533803 ( 28) AATTGCGC 1 chrV:14991010-14991090 ( 25) TATTGCGC 1 chrIII:4404514-4404594 ( 6) AATTGCGC 1 chrV:13437667-13437747 ( 12) GGAAGCGC 1 chrIII:5405770-5405850 ( 9) GACCGCGC 1 chrIII:5380123-5380203 ( 23) GGAAGCGC 1 chrI:12956028-12956108 ( 34) GAATGCGC 1 chrIII:7712091-7712171 ( 51) TTACGCGC 1 chrIV:13289503-13289583 ( 47) GGCCGCGC 1 chrI:7643276-7643356 ( 34) CGTAGCGC 1 chrII:8041825-8041905 ( 25) TTCTGCGC 1 chrIII:6289540-6289620 ( 65) GTGGGCGC 1 chrI:12904045-12904125 ( 52) ATCGGCGC 1 chrX:16779032-16779112 ( 33) CTACGCGC 1 chrIII:7952255-7952335 ( 58) TAGCGCGA 1 chrII:7863921-7864001 ( 33) CTCCGCGC 1 chrII:10350620-10350700 ( 67) TGGAGCGA 1 chrII:8162403-8162483 ( 64) TGGAGCGA 1 chrIII:4935047-4935127 ( 32) GTATGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRGNGCGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.27814 E= 1.8e-093 48 -36 -179 47 103 -1401 64 -167 -64 -90 150 -231 23 27 -39 -23 -1401 -1401 212 -1401 -1401 215 -1401 -1401 -1401 -1401 212 -1401 -391 212 -1401 -1401 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRGNGCGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 165 E= 1.8e-093 0.381818 0.175758 0.066667 0.375758 0.557576 0.000000 0.357576 0.084848 0.175758 0.121212 0.648485 0.054545 0.321212 0.272727 0.175758 0.230303 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.018182 0.981818 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRGNGCGC MEME-1 regular expression -------------------------------------------------------------------------------- [AT][AG]G[ACT]GCGC -------------------------------------------------------------------------------- Time 5.19 secs. ******************************************************************************** ******************************************************************************** MOTIF YTGCGTYT MEME-2 width = 8 sites = 22 llr = 213 E-value = 1.1e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTGCGTYT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 6::a::5: probability G ::a:a::: matrix T 4a:::a4a bits 2.1 *** 1.9 ***** * 1.7 ***** * 1.5 ***** * Relative 1.3 ***** * Entropy 1.1 ****** * (14.0 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGCGTYT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6019919-6019999 34 1.20e-05 ATTATACACC CTGCGTCT CTTAAGTTCA chrIV:2664602-2664682 11 1.20e-05 GTCTAACTGC CTGCGtct ctctatccct chrI:3228086-3228166 24 1.20e-05 TTGTTGTCCG CTGCGTCT CCACGCTTCG chrV:2109422-2109502 14 1.20e-05 GACACTTTCT CTGCGTCT CATGCCCTCT chrIV:3638733-3638813 5 1.20e-05 ATGT CTGCGTCT CTTTTTATGG chrIV:3599275-3599355 21 1.20e-05 TTTGCAATGT CTGCGTCT CTGCATTTTG chrIII:1496013-1496093 13 1.20e-05 tgaaTTGTCT CTGCGTCT CCTCGATTCT chrV:17870717-17870797 66 1.20e-05 CACACACTCT CTGCGTCT CCTCGTT chrII:913398-913478 3 1.20e-05 GT CTGCGTCT CCAATCGTTT chrI:3867321-3867401 63 2.64e-05 TCTCGTCTCT CTGCGTTT CCAGTGTAAA chrIII:13771320-13771400 12 2.64e-05 TTGAAGCTCG CTGCGTTT GTCTCACACG chrII:8138141-8138221 63 2.64e-05 GAATGAGAGG CTGCGTTT TGTCATCATG chrI:14642650-14642730 5 2.64e-05 ATCT CTGCGTTT ATTATCCACT chrX:10681263-10681343 12 4.07e-05 ATGACTTTCT TTGCGTCT CTCTTTTTCG chrV:7804186-7804266 34 4.07e-05 TCGTACTCTT TTGCGTCT GCGATGAATT chrIII:6248234-6248314 52 4.07e-05 CACCACGATC TTGCGTCT TTTGAATTTG chrII:8964991-8965071 32 5.79e-05 CGTGCGGCAG TTGCGTTT TCCGTCAGAG chrX:15922978-15923058 69 5.79e-05 ACTGCTGTCC TTGCGTTT TCTG chrIV:17084494-17084574 69 5.79e-05 CAGTGCGGCA TTGCGTTT TTTG chrI:11910011-11910091 65 5.79e-05 CGTGCCAGGG TTGCGTTT TGGCCCCG chrIII:424018-424098 70 5.79e-05 TGGAGCGCGC TTGCGTTT CTT chrIII:8009928-8010008 47 7.01e-05 AGCGGACGCG CTGCGTGT CGCGTCGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGCGTYT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6019919-6019999 1.2e-05 33_[+2]_39 chrIV:2664602-2664682 1.2e-05 10_[+2]_62 chrI:3228086-3228166 1.2e-05 23_[+2]_49 chrV:2109422-2109502 1.2e-05 13_[+2]_59 chrIV:3638733-3638813 1.2e-05 4_[+2]_68 chrIV:3599275-3599355 1.2e-05 20_[+2]_52 chrIII:1496013-1496093 1.2e-05 12_[+2]_60 chrV:17870717-17870797 1.2e-05 65_[+2]_7 chrII:913398-913478 1.2e-05 2_[+2]_70 chrI:3867321-3867401 2.6e-05 62_[+2]_10 chrIII:13771320-13771400 2.6e-05 11_[+2]_61 chrII:8138141-8138221 2.6e-05 62_[+2]_10 chrI:14642650-14642730 2.6e-05 4_[+2]_68 chrX:10681263-10681343 4.1e-05 11_[+2]_61 chrV:7804186-7804266 4.1e-05 33_[+2]_39 chrIII:6248234-6248314 4.1e-05 51_[+2]_21 chrII:8964991-8965071 5.8e-05 31_[+2]_41 chrX:15922978-15923058 5.8e-05 68_[+2]_4 chrIV:17084494-17084574 5.8e-05 68_[+2]_4 chrI:11910011-11910091 5.8e-05 64_[+2]_8 chrIII:424018-424098 5.8e-05 69_[+2]_3 chrIII:8009928-8010008 7e-05 46_[+2]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGCGTYT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTGCGTYT width=8 seqs=22 chrIII:6019919-6019999 ( 34) CTGCGTCT 1 chrIV:2664602-2664682 ( 11) CTGCGTCT 1 chrI:3228086-3228166 ( 24) CTGCGTCT 1 chrV:2109422-2109502 ( 14) CTGCGTCT 1 chrIV:3638733-3638813 ( 5) CTGCGTCT 1 chrIV:3599275-3599355 ( 21) CTGCGTCT 1 chrIII:1496013-1496093 ( 13) CTGCGTCT 1 chrV:17870717-17870797 ( 66) CTGCGTCT 1 chrII:913398-913478 ( 3) CTGCGTCT 1 chrI:3867321-3867401 ( 63) CTGCGTTT 1 chrIII:13771320-13771400 ( 12) CTGCGTTT 1 chrII:8138141-8138221 ( 63) CTGCGTTT 1 chrI:14642650-14642730 ( 5) CTGCGTTT 1 chrX:10681263-10681343 ( 12) TTGCGTCT 1 chrV:7804186-7804266 ( 34) TTGCGTCT 1 chrIII:6248234-6248314 ( 52) TTGCGTCT 1 chrII:8964991-8965071 ( 32) TTGCGTTT 1 chrX:15922978-15923058 ( 69) TTGCGTTT 1 chrIV:17084494-17084574 ( 69) TTGCGTTT 1 chrI:11910011-11910091 ( 65) TTGCGTTT 1 chrIII:424018-424098 ( 70) TTGCGTTT 1 chrIII:8009928-8010008 ( 47) CTGCGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGCGTYT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7218 E= 1.1e-006 -1110 149 -1110 43 -1110 -1110 -1110 189 -1110 -1110 212 -1110 -1110 215 -1110 -1110 -1110 -1110 212 -1110 -1110 -1110 -1110 189 -1110 127 -234 60 -1110 -1110 -1110 189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGCGTYT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.1e-006 0.000000 0.636364 0.000000 0.363636 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.545455 0.045455 0.409091 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGCGTYT MEME-2 regular expression -------------------------------------------------------------------------------- [CT]TGCGT[CT]T -------------------------------------------------------------------------------- Time 10.72 secs. ******************************************************************************** ******************************************************************************** MOTIF AATTYGAA MEME-3 width = 8 sites = 48 llr = 376 E-value = 7.0e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATTYGAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 87:::2aa pos.-specific C ::::42:: probability G :::::6:: matrix T 23aa6::: bits 2.1 1.9 * ** 1.7 ** ** 1.5 ** ** Relative 1.3 * ** ** Entropy 1.1 ***** ** (11.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATTTGAA consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTYGAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:17421865-17421945 67 2.55e-05 GTCAGGCGGG AATTTGAA AATTTT chrIII:2805238-2805318 22 2.55e-05 TTGAAAACTA AATTTGAA ACACCCGCGC chrII:2342168-2342248 66 2.55e-05 ACAGCAGGGG AATTTGAA TGGGAAA chrV:12647857-12647937 66 2.55e-05 gttggcggca aatttgaa tgggaag chrI:2642468-2642548 42 2.55e-05 gGGGCGCATT AATTTGAA GTCTGTAAAA chrV:11733633-11733713 23 2.55e-05 AAGGCAAATA AATTTGAA CTCGAAAAGT chrI:3865987-3866067 37 2.55e-05 ATGGGAGCTA AATTTGAA AGTGGCGGTT chrI:1895087-1895167 10 2.55e-05 ATATTTCCC AATTTGAA TACCCGCCAA chrIV:11211030-11211110 5 2.55e-05 TTGT AATTTGAA ATTCCGGCCG chrI:8735898-8735978 58 2.55e-05 CTCTAATGAT AATTTGAA GAAATCTGAG chrI:13367729-13367809 70 2.55e-05 GTTGGGCGGG AATTTGAA CTT chrV:7804186-7804266 48 4.69e-05 GTCTGCGATG AATTCGAA CAGGAAAGGC chrI:11038884-11038964 12 4.69e-05 TAAAGAAATA AATTCGAA AAACACGCGC chrIII:1207994-1208074 72 4.69e-05 CTGGGCGCGG AATTCGAA T chrI:7643276-7643356 11 4.69e-05 CAGCGAACAA AATTCGAA AAGAGAACGG chrIII:9580624-9580704 25 4.69e-05 TAAAAAAACA AATTCGAA CAACGGATCC chrIII:5085589-5085669 6 4.69e-05 TTGGA AATTCGAA CACCCCCTCG chrI:3908586-3908666 69 7.20e-05 CATTTTTGCA ATTTTGAA GTTT chrI:3228086-3228166 68 7.20e-05 ACCGGCATTC ATTTTGAA TGCTG chrIII:4404514-4404594 68 7.20e-05 TATTACTCGA ATTTTGAA CGGTA chrII:5501425-5501505 68 9.31e-05 ACTGGCGGCA ATTTCGAA CGTGC chrI:3466834-3466914 26 1.18e-04 ACTGGAAACT AATTTCAA ACGACGCGCG chrIII:8224940-8225020 50 1.18e-04 CCACAAAACA AATTTCAA TTTGCCTCTT chrII:8162403-8162483 17 1.70e-04 TGCTTGATCA AATTTAAA TTTTAGCCGT chrII:10607720-10607800 2 1.70e-04 a aaTTTAAA TGAAATGTTC chrI:7883947-7884027 63 1.70e-04 TTCTCCTTCC AATTCCAA AATGtcttcc chrIV:2613249-2613329 36 1.95e-04 GGACGAACAA TATTTGAA TCACCCCATT chrIV:1310475-1310555 54 1.95e-04 CCATTGCGAA TATTTGAA TTGTTTTTCG chrIII:12377413-12377493 69 2.20e-04 TTTTCGCGGC AATTCAAA TTAG chrII:1346438-1346518 1 2.20e-04 . AATTCAAA TTCCCGCCGA chrIII:2331384-2331464 7 2.20e-04 AAATTC AATTCAAA TCCGTGTGAT chrII:4453531-4453611 17 2.20e-04 CGGGGCGCCA AATTCAAA ATTCTGACAT chrII:8138141-8138221 18 2.41e-04 TTTGTGAAAT TATTCGAA AGCAAATGCG chrI:6850037-6850117 71 2.41e-04 ATTGGAATTT TATTCGAA AA chrI:1601622-1601702 67 2.41e-04 tattttattt tattCGAA AAAAAC chrI:14820269-14820349 19 2.66e-04 aaaaaaacaa aTTTTCAA AAATAATGCA chrIII:8265886-8265966 71 2.66e-04 TTCACTAAAA ATTTTCAA GA chrII:14969454-14969534 1 2.66e-04 . ATTTTCAA TTTTTTCCGC chrI:10185754-10185834 55 2.66e-04 TAATGCGCCC ATTTTCAA CAGAAAATAA chrI:10192962-10193042 31 2.66e-04 TTGGCTCGAT ATTTTCAA CAAAATCTCT chrIII:5190807-5190887 2 2.66e-04 C ATTTTCAA ACAAGCTACA chrIV:2666731-2666811 1 3.16e-04 . ATTTTAAA AAAAATTTGG chrV:4169825-4169905 2 3.41e-04 T TTTTTGAA TGACCCCGCT chrIII:11565775-11565855 1 3.66e-04 . ATTTCAAA CTCCCGCGCT chrIV:7774369-7774449 66 3.87e-04 GCAGTCAATA TTTTCGAA CAAAAAT chrV:13625768-13625848 14 3.87e-04 AGTTCCTTTC TTTTCGAA ATCGCCGGCC chrIII:8009928-8010008 5 4.84e-04 TTTT AATGTGAA ACCTGGACGA chrI:11839685-11839765 4 4.84e-04 AAA AATGTGAA AAATAGTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTYGAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:17421865-17421945 2.6e-05 66_[+3]_6 chrIII:2805238-2805318 2.6e-05 21_[+3]_51 chrII:2342168-2342248 2.6e-05 65_[+3]_7 chrV:12647857-12647937 2.6e-05 65_[+3]_7 chrI:2642468-2642548 2.6e-05 41_[+3]_31 chrV:11733633-11733713 2.6e-05 22_[+3]_50 chrI:3865987-3866067 2.6e-05 36_[+3]_36 chrI:1895087-1895167 2.6e-05 9_[+3]_63 chrIV:11211030-11211110 2.6e-05 4_[+3]_68 chrI:8735898-8735978 2.6e-05 57_[+3]_15 chrI:13367729-13367809 2.6e-05 69_[+3]_3 chrV:7804186-7804266 4.7e-05 47_[+3]_25 chrI:11038884-11038964 4.7e-05 11_[+3]_61 chrIII:1207994-1208074 4.7e-05 71_[+3]_1 chrI:7643276-7643356 4.7e-05 10_[+3]_62 chrIII:9580624-9580704 4.7e-05 24_[+3]_48 chrIII:5085589-5085669 4.7e-05 5_[+3]_67 chrI:3908586-3908666 7.2e-05 68_[+3]_4 chrI:3228086-3228166 7.2e-05 67_[+3]_5 chrIII:4404514-4404594 7.2e-05 67_[+3]_5 chrII:5501425-5501505 9.3e-05 67_[+3]_5 chrI:3466834-3466914 0.00012 25_[+3]_47 chrIII:8224940-8225020 0.00012 49_[+3]_23 chrII:8162403-8162483 0.00017 16_[+3]_56 chrII:10607720-10607800 0.00017 1_[+3]_71 chrI:7883947-7884027 0.00017 62_[+3]_10 chrIV:2613249-2613329 0.00019 35_[+3]_37 chrIV:1310475-1310555 0.00019 53_[+3]_19 chrIII:12377413-12377493 0.00022 68_[+3]_4 chrII:1346438-1346518 0.00022 [+3]_72 chrIII:2331384-2331464 0.00022 6_[+3]_66 chrII:4453531-4453611 0.00022 16_[+3]_56 chrII:8138141-8138221 0.00024 17_[+3]_55 chrI:6850037-6850117 0.00024 70_[+3]_2 chrI:1601622-1601702 0.00024 66_[+3]_6 chrI:14820269-14820349 0.00027 18_[+3]_54 chrIII:8265886-8265966 0.00027 70_[+3]_2 chrII:14969454-14969534 0.00027 [+3]_72 chrI:10185754-10185834 0.00027 54_[+3]_18 chrI:10192962-10193042 0.00027 30_[+3]_42 chrIII:5190807-5190887 0.00027 1_[+3]_71 chrIV:2666731-2666811 0.00032 [+3]_72 chrV:4169825-4169905 0.00034 1_[+3]_71 chrIII:11565775-11565855 0.00037 [+3]_72 chrIV:7774369-7774449 0.00039 65_[+3]_7 chrV:13625768-13625848 0.00039 13_[+3]_59 chrIII:8009928-8010008 0.00048 4_[+3]_68 chrI:11839685-11839765 0.00048 3_[+3]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTYGAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATTYGAA width=8 seqs=48 chrIV:17421865-17421945 ( 67) AATTTGAA 1 chrIII:2805238-2805318 ( 22) AATTTGAA 1 chrII:2342168-2342248 ( 66) AATTTGAA 1 chrV:12647857-12647937 ( 66) AATTTGAA 1 chrI:2642468-2642548 ( 42) AATTTGAA 1 chrV:11733633-11733713 ( 23) AATTTGAA 1 chrI:3865987-3866067 ( 37) AATTTGAA 1 chrI:1895087-1895167 ( 10) AATTTGAA 1 chrIV:11211030-11211110 ( 5) AATTTGAA 1 chrI:8735898-8735978 ( 58) AATTTGAA 1 chrI:13367729-13367809 ( 70) AATTTGAA 1 chrV:7804186-7804266 ( 48) AATTCGAA 1 chrI:11038884-11038964 ( 12) AATTCGAA 1 chrIII:1207994-1208074 ( 72) AATTCGAA 1 chrI:7643276-7643356 ( 11) AATTCGAA 1 chrIII:9580624-9580704 ( 25) AATTCGAA 1 chrIII:5085589-5085669 ( 6) AATTCGAA 1 chrI:3908586-3908666 ( 69) ATTTTGAA 1 chrI:3228086-3228166 ( 68) ATTTTGAA 1 chrIII:4404514-4404594 ( 68) ATTTTGAA 1 chrII:5501425-5501505 ( 68) ATTTCGAA 1 chrI:3466834-3466914 ( 26) AATTTCAA 1 chrIII:8224940-8225020 ( 50) AATTTCAA 1 chrII:8162403-8162483 ( 17) AATTTAAA 1 chrII:10607720-10607800 ( 2) AATTTAAA 1 chrI:7883947-7884027 ( 63) AATTCCAA 1 chrIV:2613249-2613329 ( 36) TATTTGAA 1 chrIV:1310475-1310555 ( 54) TATTTGAA 1 chrIII:12377413-12377493 ( 69) AATTCAAA 1 chrII:1346438-1346518 ( 1) AATTCAAA 1 chrIII:2331384-2331464 ( 7) AATTCAAA 1 chrII:4453531-4453611 ( 17) AATTCAAA 1 chrII:8138141-8138221 ( 18) TATTCGAA 1 chrI:6850037-6850117 ( 71) TATTCGAA 1 chrI:1601622-1601702 ( 67) TATTCGAA 1 chrI:14820269-14820349 ( 19) ATTTTCAA 1 chrIII:8265886-8265966 ( 71) ATTTTCAA 1 chrII:14969454-14969534 ( 1) ATTTTCAA 1 chrI:10185754-10185834 ( 55) ATTTTCAA 1 chrI:10192962-10193042 ( 31) ATTTTCAA 1 chrIII:5190807-5190887 ( 2) ATTTTCAA 1 chrIV:2666731-2666811 ( 1) ATTTTAAA 1 chrV:4169825-4169905 ( 2) TTTTTGAA 1 chrIII:11565775-11565855 ( 1) ATTTCAAA 1 chrIV:7774369-7774449 ( 66) TTTTCGAA 1 chrV:13625768-13625848 ( 14) TTTTCGAA 1 chrIII:8009928-8010008 ( 5) AATGTGAA 1 chrI:11839685-11839765 ( 4) AATGTGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTYGAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.01532 E= 7.0e-004 161 -1223 -1223 -70 133 -1223 -1223 21 -1223 -1223 -1223 189 -1223 -1223 -246 183 -1223 73 -1223 121 -72 -27 149 -1223 187 -1223 -1223 -1223 187 -1223 -1223 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTYGAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 7.0e-004 0.833333 0.000000 0.000000 0.166667 0.687500 0.000000 0.000000 0.312500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.041667 0.958333 0.000000 0.375000 0.000000 0.625000 0.166667 0.187500 0.645833 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTYGAA MEME-3 regular expression -------------------------------------------------------------------------------- A[AT]TT[TC]GAA -------------------------------------------------------------------------------- Time 14.10 secs. ******************************************************************************** ******************************************************************************** MOTIF CGASACKC MEME-4 width = 8 sites = 29 llr = 250 E-value = 2.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGASACKC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3:8:a::: pos.-specific C 7:24:a2a probability G :a:6::4: matrix T ::::::3: bits 2.1 * * * 1.9 * ** * 1.7 * ** * 1.5 * ** * Relative 1.3 *** ** * Entropy 1.1 ****** * (12.5 bits) 0.9 ****** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGAGACGC consensus A C T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGASACKC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:9228360-9228440 23 1.05e-05 CGCGCGAAAA CGAGACGC AGACCAAACA chrV:12647857-12647937 43 4.36e-05 gtgcgcgtgg cgagaccc agccggttgg chrIII:13169630-13169710 40 4.36e-05 AAAGTTGTGG CGAGACCC GCTCCTTGCG chrII:7863921-7864001 41 4.36e-05 ttctccgcgc cgagaccc atcgtcgata chrX:16779032-16779112 69 4.36e-05 CTCTTCCCCT CGAGACCC ACGC chrIII:6929714-6929794 50 4.36e-05 CTCTTCGCTT CGAGACCC GTCACTCTTG chrII:2342168-2342248 6 5.58e-05 CTAAA CGACACTC CGCTCTCCCG chrV:14991010-14991090 14 5.58e-05 GCGGATCTTA CGACACTC CACTATTGCG chrIII:8717383-8717463 48 5.58e-05 ACACGCGCTA CGACACTC CGCTCGCTCG chrIV:10097047-10097127 16 5.58e-05 GTAGTGCCTA CGACACTC CGATGTTCCA chrIV:1309957-1310037 24 5.58e-05 TTCCGCACTA CGACACTC CGAAATCCCG chrIV:9932211-9932291 41 5.58e-05 AACTAACAAA CGACACTC CGATTTCGCG chrI:1601622-1601702 11 5.58e-05 ACACGCACTA CGACACTC CGTTATCCCG chrIII:8224940-8225020 28 5.58e-05 ACGCGCGCTA CGACACTC CGTTCCACAA chrII:8041825-8041905 9 5.58e-05 ACGCGCTA CGACACTC CGTTTGAATT chrI:14710987-14711067 71 7.88e-05 TTGCAAAGCG AGAGACGC AG chrII:10820160-10820240 53 7.88e-05 GTTAGAGGGC AGAGACGC AGACTTTTCA chrIII:1533723-1533803 59 7.88e-05 ATGAGAGAGC AGAGACGC AGAGTACGAA chrIII:3719711-3719791 63 7.88e-05 TTGAGAGTTG AGAGACGC AGGAGTTATT chrIII:13152817-13152897 37 7.88e-05 TGCGAAATCG AGAGACGC AGAGAAGCCG chrIV:12259662-12259742 38 7.88e-05 GGCCGTACCA CGACACCC GCCGAATTGA chrIII:11505376-11505456 64 7.88e-05 TGAGAGAGTG AGAGACGC CAGACAAGC chrI:11839685-11839765 31 7.88e-05 GAAAAAGGTG AGAGACGC CGAGAAAATT chrIII:5085589-5085669 44 7.88e-05 CTGAAAATAA AGAGACGC AGATATTGGG chrIII:13771320-13771400 28 8.75e-05 TTGTCTCACA CGCGACGC GACCCGCTAC chrI:13289860-13289940 38 8.75e-05 CACATGAGCA CGCGACGC GACCGCATCG chrII:10172601-10172681 58 8.75e-05 CGGGCTAAAC CGCGACGC CTCTGACGAT chrI:9772635-9772715 43 8.75e-05 GGAAAACGCA CGCGACGC GTGACCGCAG chrIII:11139060-11139140 43 1.80e-04 GCTCCACAAG CGCCACTC CCAAGAGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGASACKC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:9228360-9228440 1.1e-05 22_[+4]_50 chrV:12647857-12647937 4.4e-05 42_[+4]_30 chrIII:13169630-13169710 4.4e-05 39_[+4]_33 chrII:7863921-7864001 4.4e-05 40_[+4]_32 chrX:16779032-16779112 4.4e-05 68_[+4]_4 chrIII:6929714-6929794 4.4e-05 49_[+4]_23 chrII:2342168-2342248 5.6e-05 5_[+4]_67 chrV:14991010-14991090 5.6e-05 13_[+4]_59 chrIII:8717383-8717463 5.6e-05 47_[+4]_25 chrIV:10097047-10097127 5.6e-05 15_[+4]_57 chrIV:1309957-1310037 5.6e-05 23_[+4]_49 chrIV:9932211-9932291 5.6e-05 40_[+4]_32 chrI:1601622-1601702 5.6e-05 10_[+4]_62 chrIII:8224940-8225020 5.6e-05 27_[+4]_45 chrII:8041825-8041905 5.6e-05 8_[+4]_64 chrI:14710987-14711067 7.9e-05 70_[+4]_2 chrII:10820160-10820240 7.9e-05 52_[+4]_20 chrIII:1533723-1533803 7.9e-05 58_[+4]_14 chrIII:3719711-3719791 7.9e-05 62_[+4]_10 chrIII:13152817-13152897 7.9e-05 36_[+4]_36 chrIV:12259662-12259742 7.9e-05 37_[+4]_35 chrIII:11505376-11505456 7.9e-05 63_[+4]_9 chrI:11839685-11839765 7.9e-05 30_[+4]_42 chrIII:5085589-5085669 7.9e-05 43_[+4]_29 chrIII:13771320-13771400 8.7e-05 27_[+4]_45 chrI:13289860-13289940 8.7e-05 37_[+4]_35 chrII:10172601-10172681 8.7e-05 57_[+4]_15 chrI:9772635-9772715 8.7e-05 42_[+4]_30 chrIII:11139060-11139140 0.00018 42_[+4]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGASACKC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGASACKC width=8 seqs=29 chrIII:9228360-9228440 ( 23) CGAGACGC 1 chrV:12647857-12647937 ( 43) CGAGACCC 1 chrIII:13169630-13169710 ( 40) CGAGACCC 1 chrII:7863921-7864001 ( 41) CGAGACCC 1 chrX:16779032-16779112 ( 69) CGAGACCC 1 chrIII:6929714-6929794 ( 50) CGAGACCC 1 chrII:2342168-2342248 ( 6) CGACACTC 1 chrV:14991010-14991090 ( 14) CGACACTC 1 chrIII:8717383-8717463 ( 48) CGACACTC 1 chrIV:10097047-10097127 ( 16) CGACACTC 1 chrIV:1309957-1310037 ( 24) CGACACTC 1 chrIV:9932211-9932291 ( 41) CGACACTC 1 chrI:1601622-1601702 ( 11) CGACACTC 1 chrIII:8224940-8225020 ( 28) CGACACTC 1 chrII:8041825-8041905 ( 9) CGACACTC 1 chrI:14710987-14711067 ( 71) AGAGACGC 1 chrII:10820160-10820240 ( 53) AGAGACGC 1 chrIII:1533723-1533803 ( 59) AGAGACGC 1 chrIII:3719711-3719791 ( 63) AGAGACGC 1 chrIII:13152817-13152897 ( 37) AGAGACGC 1 chrIV:12259662-12259742 ( 38) CGACACCC 1 chrIII:11505376-11505456 ( 64) AGAGACGC 1 chrI:11839685-11839765 ( 31) AGAGACGC 1 chrIII:5085589-5085669 ( 44) AGAGACGC 1 chrIII:13771320-13771400 ( 28) CGCGACGC 1 chrI:13289860-13289940 ( 38) CGCGACGC 1 chrII:10172601-10172681 ( 58) CGCGACGC 1 chrI:9772635-9772715 ( 43) CGCGACGC 1 chrIII:11139060-11139140 ( 43) CGCCACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGASACKC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.93691 E= 2.1e-001 1 168 -1150 -1150 -1150 -1150 212 -1150 160 -39 -1150 -1150 -1150 75 143 -1150 187 -1150 -1150 -1150 -1150 215 -1150 -1150 -1150 -13 96 35 -1150 215 -1150 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGASACKC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.1e-001 0.275862 0.724138 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.827586 0.172414 0.000000 0.000000 0.000000 0.379310 0.620690 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.206897 0.448276 0.344828 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGASACKC MEME-4 regular expression -------------------------------------------------------------------------------- [CA]GA[GC]AC[GTC]C -------------------------------------------------------------------------------- Time 17.36 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGAGTGT MEME-5 width = 8 sites = 13 llr = 132 E-value = 6.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGAGTGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::8:::: pos.-specific C a::::12: probability G :aa:a:8: matrix T :::2:9:a bits 2.1 *** * 1.9 *** * * 1.7 *** * * 1.5 *** **** Relative 1.3 ******** Entropy 1.1 ******** (14.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGGAGTGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGTGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:14185328-14185408 56 1.26e-05 AGCGGAATAT CGGAGTGT CGTTGGAGTG chrIII:4204230-4204310 72 1.26e-05 CAACATGCAC CGGAGTGT C chrI:11038884-11038964 68 1.26e-05 AGCGGGATTT CGGAGTGT CGTTG chrV:6710593-6710673 45 1.26e-05 TTGAGGGGTG CGGAGTGT CGTAGCGCGC chrI:1895087-1895167 45 1.26e-05 TGCGGAATAG CGGAGTGT CGTTGCGCGC chrIV:11211030-11211110 60 1.26e-05 CATGGGATAT CGGAGTGT CGTTGCAACG chrI:7643276-7643356 26 1.26e-05 GAAAAGAGAA CGGAGTGT CGTAGCGCGT chrV:13625768-13625848 73 1.26e-05 GATGGCATAT CGGAGTGT chrIII:9089587-9089667 47 3.75e-05 CGCGGGATAT CGGAGTCT CGTACCCGAC chrII:8964991-8965071 11 3.75e-05 TAGATTTACG CGGTGTGT AAGCGTGCGG chrII:8162403-8162483 40 3.75e-05 GCCGTAACTG CGGAGTCT CGTTGCTAAT chrIII:9947166-9947246 27 3.75e-05 TCGTCGTTTT CGGTGTGT TCGACGTAGA chrIII:8432316-8432396 46 4.81e-05 GTCGTTACTT CGGAGCGT CGTTGGAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGTGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:14185328-14185408 1.3e-05 55_[+5]_17 chrIII:4204230-4204310 1.3e-05 71_[+5]_1 chrI:11038884-11038964 1.3e-05 67_[+5]_5 chrV:6710593-6710673 1.3e-05 44_[+5]_28 chrI:1895087-1895167 1.3e-05 44_[+5]_28 chrIV:11211030-11211110 1.3e-05 59_[+5]_13 chrI:7643276-7643356 1.3e-05 25_[+5]_47 chrV:13625768-13625848 1.3e-05 72_[+5] chrIII:9089587-9089667 3.7e-05 46_[+5]_26 chrII:8964991-8965071 3.7e-05 10_[+5]_62 chrII:8162403-8162483 3.7e-05 39_[+5]_33 chrIII:9947166-9947246 3.7e-05 26_[+5]_46 chrIII:8432316-8432396 4.8e-05 45_[+5]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGTGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGAGTGT width=8 seqs=13 chrI:14185328-14185408 ( 56) CGGAGTGT 1 chrIII:4204230-4204310 ( 72) CGGAGTGT 1 chrI:11038884-11038964 ( 68) CGGAGTGT 1 chrV:6710593-6710673 ( 45) CGGAGTGT 1 chrI:1895087-1895167 ( 45) CGGAGTGT 1 chrIV:11211030-11211110 ( 60) CGGAGTGT 1 chrI:7643276-7643356 ( 26) CGGAGTGT 1 chrV:13625768-13625848 ( 73) CGGAGTGT 1 chrIII:9089587-9089667 ( 47) CGGAGTCT 1 chrII:8964991-8965071 ( 11) CGGTGTGT 1 chrII:8162403-8162483 ( 40) CGGAGTCT 1 chrIII:9947166-9947246 ( 27) CGGTGTGT 1 chrIII:8432316-8432396 ( 46) CGGAGCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGTGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.985 E= 6.9e+000 -1035 215 -1035 -1035 -1035 -1035 212 -1035 -1035 -1035 212 -1035 163 -1035 -1035 -81 -1035 -1035 212 -1035 -1035 -155 -1035 177 -1035 -55 188 -1035 -1035 -1035 -1035 189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGTGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 6.9e+000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.846154 0.000000 0.000000 0.153846 0.000000 0.000000 1.000000 0.000000 0.000000 0.076923 0.000000 0.923077 0.000000 0.153846 0.846154 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGTGT MEME-5 regular expression -------------------------------------------------------------------------------- CGGAGTGT -------------------------------------------------------------------------------- Time 20.57 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:3887694-3887774 5.22e-02 80 chrIII:6289540-6289620 4.24e-01 80 chrV:10134320-10134400 1.30e-02 80 chrI:10478247-10478327 8.01e-02 80 chrIII:5085589-5085669 1.22e-02 5_[+3(4.69e-05)]_30_[+4(7.88e-05)]_\ 29 chrV:13625768-13625848 1.05e-02 72_[+5(1.26e-05)] chrIV:1310475-1310555 9.05e-04 34_[+1(4.63e-05)]_38 chrX:15725725-15725805 1.13e-02 26_[+2(8.47e-05)]_46 chrIII:9947166-9947246 6.08e-02 26_[+5(3.75e-05)]_46 chrII:8017366-8017446 7.52e-01 80 chrV:13880342-13880422 4.62e-01 80 chrIV:1923888-1923968 1.01e-01 80 chrIII:10931012-10931092 1.78e-02 80 chrIII:13484493-13484573 6.78e-01 80 chrIII:11039394-11039474 2.59e-02 80 chrI:11839685-11839765 1.93e-03 30_[+4(7.88e-05)]_42 chrIII:6248234-6248314 2.59e-02 51_[+2(4.07e-05)]_21 chrI:871968-872048 4.47e-02 42_[+1(8.52e-05)]_30 chrI:3930580-3930660 5.32e-01 80 chrII:12604393-12604473 1.80e-01 80 chrIII:8268483-8268563 9.77e-01 80 chrII:5501425-5501505 1.86e-01 67_[+3(9.31e-05)]_5 chrI:1562608-1562688 7.56e-01 80 chrIII:8490417-8490497 2.46e-02 80 chrI:7233204-7233284 1.96e-01 80 chrI:7883947-7884027 2.40e-01 80 chrI:1514566-1514646 2.77e-02 28_[+1(4.63e-05)]_44 chrI:7676316-7676396 9.68e-01 80 chrIV:9948211-9948291 7.18e-01 80 chrII:8041825-8041905 2.96e-03 8_[+4(5.58e-05)]_64 chrIII:8838703-8838783 6.09e-02 71_[+1(8.52e-05)]_1 chrI:4381849-4381929 2.76e-01 80 chrI:9772635-9772715 3.82e-02 42_[+4(8.75e-05)]_30 chrI:14662957-14663037 8.51e-02 80 chrIV:4031198-4031278 6.93e-01 80 chrIII:8224940-8225020 3.66e-04 27_[+4(5.58e-05)]_45 chrI:7466711-7466791 1.09e-01 38_[+1(8.52e-05)]_34 chrIV:3055469-3055549 1.64e-02 32_[+1(8.52e-05)]_40 chrII:913398-913478 4.86e-04 2_[+2(1.20e-05)]_21_[+1(4.63e-05)]_\ 41 chrIII:5190807-5190887 9.73e-02 80 chrII:10172601-10172681 1.98e-02 57_[+4(8.75e-05)]_15 chrV:17906321-17906401 3.75e-02 80 chrIII:8829364-8829444 5.19e-01 80 chrIII:9580624-9580704 1.17e-03 24_[+3(4.69e-05)]_23_[+1(4.63e-05)]_\ 17 chrIII:424018-424098 7.52e-03 59_[+1(8.52e-05)]_2_[+2(5.79e-05)]_\ 3 chrI:3192746-3192826 5.85e-03 28_[+1(8.52e-05)]_44 chrV:10238839-10238919 2.01e-01 80 chrIV:1328905-1328985 9.57e-02 80 chrIII:5380123-5380203 3.43e-02 80 chrI:1601622-1601702 1.66e-02 10_[+4(5.58e-05)]_62 chrI:13367729-13367809 1.46e-01 69_[+3(2.55e-05)]_3 chrIV:13453669-13453749 9.00e-02 46_[+1(8.52e-05)]_26 chrIII:6929714-6929794 1.36e-02 49_[+4(4.36e-05)]_23 chrIII:10895974-10896054 2.97e-01 80 chrI:11910011-11910091 2.03e-01 64_[+2(5.79e-05)]_8 chrV:13757524-13757604 5.90e-01 80 chrV:5687380-5687460 3.03e-01 80 chrI:13289860-13289940 1.21e-01 37_[+4(8.75e-05)]_35 chrIV:17380447-17380527 2.33e-01 80 chrIV:7774369-7774449 3.91e-03 43_[+1(4.63e-05)]_29 chrI:14642650-14642730 7.32e-04 4_[+2(2.64e-05)]_21_[+1(4.63e-05)]_\ 39 chrIV:9932211-9932291 3.28e-02 40_[+4(5.58e-05)]_32 chrII:1310264-1310344 6.26e-02 28_[+1(4.63e-05)]_44 chrIII:11565775-11565855 6.79e-03 31_[+1(8.52e-05)]_41 chrIV:1054905-1054985 3.93e-02 80 chrII:4959858-4959938 1.62e-02 58_[+1(4.63e-05)]_14 chrIII:7712091-7712171 1.60e-01 80 chrV:17870717-17870797 4.87e-04 65_[+2(1.20e-05)]_7 chrII:10607720-10607800 5.36e-03 23_[+1(8.52e-05)]_49 chrI:12486919-12486999 9.31e-02 9_[+1(8.52e-05)]_63 chrI:12956028-12956108 4.81e-01 80 chrIV:12684512-12684592 1.04e-01 80 chrIII:9848214-9848294 1.23e-01 80 chrI:11964998-11965078 1.21e-01 64_[+1(8.52e-05)]_8 chrIV:17331239-17331319 8.15e-02 80 chrII:4453531-4453611 2.73e-02 80 chrI:10192962-10193042 4.23e-01 80 chrIV:773099-773179 6.69e-03 32_[+1(8.52e-05)]_40 chrX:9774443-9774523 8.64e-02 80 chrV:12747564-12747644 3.50e-02 25_[+1(4.63e-05)]_47 chrI:7643276-7643356 3.07e-04 10_[+3(4.69e-05)]_7_[+5(1.26e-05)]_\ 47 chrI:8735898-8735978 2.56e-02 57_[+3(2.55e-05)]_15 chrX:16779032-16779112 2.52e-02 68_[+4(4.36e-05)]_4 chrIV:17084494-17084574 1.58e-03 68_[+2(5.79e-05)]_4 chrI:6562509-6562589 1.60e-01 80 chrII:8162403-8162483 1.13e-03 39_[+5(3.75e-05)]_33 chrIV:11298647-11298727 5.50e-01 80 chrI:11930652-11930732 1.01e-02 38_[+4(4.36e-05)]_34 chrIII:4404514-4404594 7.56e-03 67_[+3(7.20e-05)]_5 chrIII:11505376-11505456 1.92e-02 63_[+4(7.88e-05)]_9 chrIII:8009928-8010008 5.48e-05 25_[+1(4.63e-05)]_13_[+2(7.01e-05)]_\ 26 chrIII:4187021-4187101 9.04e-01 80 chrIV:12079076-12079156 2.18e-02 8_[+1(4.63e-05)]_64 chrV:14734509-14734589 9.61e-02 34_[+1(8.52e-05)]_38 chrI:12773451-12773531 8.95e-01 80 chrII:7863921-7864001 2.97e-02 40_[+4(4.36e-05)]_32 chrI:10079627-10079707 4.29e-01 80 chrI:4386567-4386647 6.18e-01 80 chrIV:11211030-11211110 1.85e-03 4_[+3(2.55e-05)]_47_[+5(1.26e-05)]_\ 13 chrV:14597947-14598027 7.24e-01 80 chrIV:2613249-2613329 3.29e-03 68_[+1(8.52e-05)]_4 chrIII:4935047-4935127 2.62e-01 80 chrIV:1309957-1310037 1.67e-02 23_[+4(5.58e-05)]_49 chrIII:1496013-1496093 1.41e-03 12_[+2(1.20e-05)]_35_[+1(8.52e-05)]_\ 17 chrV:10338736-10338816 6.03e-02 80 chrIII:2331384-2331464 3.03e-02 80 chrIV:10197477-10197557 8.52e-01 80 chrI:11912906-11912986 5.64e-02 80 chrIII:11580677-11580757 6.75e-01 80 chrV:9930788-9930868 3.23e-02 16_[+5(6.03e-05)]_56 chrIII:5405770-5405850 1.11e-01 80 chrIV:4357464-4357544 7.04e-02 24_[+1(8.52e-05)]_48 chrI:12904045-12904125 7.86e-01 80 chrI:1895087-1895167 1.53e-04 9_[+3(2.55e-05)]_27_[+5(1.26e-05)]_\ 28 chrIV:12605509-12605589 7.23e-02 80 chrIII:11139060-11139140 1.84e-01 80 chrI:8083434-8083514 4.85e-02 80 chrII:10350620-10350700 1.37e-01 80 chrI:663641-663721 1.09e-02 57_[+1(8.52e-05)]_15 chrV:12697508-12697588 1.95e-01 80 chrIII:1207994-1208074 6.17e-03 29_[+1(4.63e-05)]_34_[+3(4.69e-05)]_\ 1 chrIV:11522379-11522459 1.73e-01 80 chrIV:9104478-9104558 8.30e-02 61_[+1(8.52e-05)]_11 chrIV:3599275-3599355 7.21e-04 20_[+2(1.20e-05)]_52 chrV:15395092-15395172 4.93e-02 80 chrII:8143450-8143530 9.99e-01 80 chrI:2306907-2306987 6.75e-01 80 chrI:6850037-6850117 1.92e-01 80 chrIV:3638733-3638813 5.51e-03 4_[+2(1.20e-05)]_68 chrIII:3735132-3735212 7.76e-02 80 chrIII:11981759-11981839 3.98e-01 80 chrI:3865987-3866067 1.12e-03 36_[+3(2.55e-05)]_36 chrV:18021692-18021772 4.10e-01 80 chrV:13591659-13591739 1.15e-01 24_[+1(4.63e-05)]_48 chrIV:10097047-10097127 7.80e-03 15_[+4(5.58e-05)]_57 chrV:8014125-8014205 5.57e-02 71_[+1(8.52e-05)]_1 chrIII:2698897-2698977 2.90e-01 80 chrIII:8717383-8717463 1.41e-02 47_[+4(5.58e-05)]_25 chrV:6710593-6710673 5.21e-05 44_[+5(1.26e-05)]_2_[+1(4.63e-05)]_\ 18 chrII:1346438-1346518 1.42e-03 29_[+1(4.63e-05)]_43 chrV:4169825-4169905 6.04e-03 25_[+1(4.63e-05)]_47 chrIV:5160344-5160424 1.03e-01 38_[+1(8.52e-05)]_34 chrIV:12259662-12259742 2.31e-02 37_[+4(7.88e-05)]_35 chrIII:10203323-10203403 7.53e-03 37_[+1(4.63e-05)]_35 chrV:3579920-3580000 4.50e-01 80 chrIII:13152817-13152897 1.75e-03 36_[+4(7.88e-05)]_16_[+1(4.63e-05)]_\ 12 chrIII:13169630-13169710 4.50e-02 39_[+4(4.36e-05)]_33 chrI:10730261-10730341 1.04e-03 34_[+1(4.63e-05)]_14_[+5(8.11e-05)]_\ 16 chrV:1918163-1918243 9.02e-02 30_[+1(8.52e-05)]_42 chrI:11038884-11038964 9.09e-05 11_[+3(4.69e-05)]_48_[+5(1.26e-05)]_\ 5 chrIII:9542999-9543079 5.62e-02 33_[+1(4.63e-05)]_39 chrIII:1540263-1540343 7.01e-02 54_[+1(8.52e-05)]_18 chrV:7804186-7804266 2.25e-04 33_[+2(4.07e-05)]_6_[+3(4.69e-05)]_\ 25 chrIV:12089063-12089143 1.70e-01 80 chrV:2109422-2109502 2.20e-02 13_[+2(1.20e-05)]_59 chrI:10185754-10185834 1.27e-02 33_[+1(8.52e-05)]_39 chrIII:8432316-8432396 8.13e-03 45_[+5(4.81e-05)]_27 chrIII:10635463-10635543 2.15e-01 80 chrII:14969454-14969534 2.91e-02 80 chrI:3070214-3070294 1.91e-01 80 chrIII:8628524-8628604 9.11e-02 80 chrII:5226475-5226555 5.92e-01 80 chrI:3600848-3600928 5.54e-02 80 chrI:8027963-8028043 1.26e-01 80 chrIII:9747326-9747406 5.40e-01 80 chrIII:8310406-8310486 1.64e-01 80 chrIII:8265886-8265966 8.44e-02 80 chrI:8962055-8962135 1.20e-01 80 chrI:13814828-13814908 4.87e-02 80 chrI:7304803-7304883 2.37e-02 80 chrIII:12821487-12821567 1.98e-02 32_[+1(8.52e-05)]_40 chrIII:9507918-9507998 8.84e-01 80 chrV:11733633-11733713 2.15e-03 22_[+3(2.55e-05)]_20_[+1(8.52e-05)]_\ 22 chrIII:12847722-12847802 6.07e-01 80 chrI:2642468-2642548 2.44e-03 41_[+3(2.55e-05)]_12_[+3(2.55e-05)]_\ 11 chrV:12647857-12647937 2.72e-05 42_[+4(4.36e-05)]_15_[+3(2.55e-05)]_\ 7 chrIII:11847802-11847882 7.72e-02 80 chrI:489877-489957 3.82e-01 80 chrIV:12094070-12094150 2.26e-01 80 chrV:6527069-6527149 1.06e-01 80 chrIII:12152339-12152419 1.31e-01 80 chrI:12954722-12954802 4.82e-01 80 chrV:1049457-1049537 1.38e-01 80 chrI:7224670-7224750 3.21e-01 80 chrV:14991010-14991090 4.50e-03 13_[+4(5.58e-05)]_59 chrV:8302687-8302767 1.07e-01 80 chrV:3195197-3195277 1.62e-01 30_[+1(4.63e-05)]_42 chrIV:3533138-3533218 8.71e-01 80 chrI:14820269-14820349 4.72e-02 80 chrIII:9228360-9228440 6.06e-04 22_[+4(1.05e-05)]_50 chrIII:4204230-4204310 5.11e-03 71_[+5(1.26e-05)]_1 chrII:7781244-7781324 2.08e-01 80 chrIII:3719711-3719791 2.01e-02 62_[+4(7.88e-05)]_10 chrX:15922978-15923058 1.52e-02 68_[+2(5.79e-05)]_4 chrIV:11371801-11371881 2.88e-01 80 chrV:14546052-14546132 2.57e-02 80 chrIV:13206057-13206137 1.01e-03 31_[+1(8.52e-05)]_41 chrII:484534-484614 8.80e-01 80 chrI:13291019-13291099 3.12e-01 80 chrIV:12121236-12121316 2.64e-01 80 chrIV:4184939-4185019 2.33e-01 80 chrX:3512616-3512696 2.68e-01 80 chrIII:9571031-9571111 5.02e-02 80 chrIV:1973517-1973597 3.15e-01 80 chrIII:12377413-12377493 1.27e-02 35_[+1(8.52e-05)]_37 chrII:13036846-13036926 1.06e-01 80 chrII:8138141-8138221 4.06e-04 62_[+2(2.64e-05)]_10 chrI:3228086-3228166 6.37e-06 3_[+1(8.52e-05)]_12_[+2(1.20e-05)]_\ 36_[+3(7.20e-05)]_5 chrI:7570744-7570824 3.22e-02 33_[+1(8.52e-05)]_39 chrIII:1533723-1533803 1.19e-02 58_[+4(7.88e-05)]_14 chrIII:8899874-8899954 3.69e-01 80 chrIII:1533235-1533315 8.20e-02 80 chrII:10820160-10820240 5.57e-03 52_[+4(7.88e-05)]_20 chrIII:7952255-7952335 8.80e-02 80 chrI:14185328-14185408 3.71e-03 55_[+5(1.26e-05)]_17 chrII:8283397-8283477 4.89e-01 80 chrIII:13771320-13771400 7.51e-05 11_[+2(2.64e-05)]_8_[+4(8.75e-05)]_\ 45 chrIV:2004961-2005041 1.51e-01 80 chrII:8964991-8965071 1.15e-04 10_[+5(3.75e-05)]_13_[+2(5.79e-05)]_\ 41 chrII:4174048-4174128 9.02e-02 80 chrIV:2666731-2666811 3.24e-01 80 chrIII:10646241-10646321 2.99e-02 42_[+1(4.63e-05)]_30 chrII:12237728-12237808 1.32e-01 80 chrIII:6009165-6009245 7.19e-01 80 chrX:10681263-10681343 4.84e-02 11_[+2(4.07e-05)]_61 chrI:3059156-3059236 7.42e-01 80 chrX:59252-59332 9.80e-01 80 chrI:3867321-3867401 1.70e-03 62_[+2(2.64e-05)]_10 chrIII:10114802-10114882 1.94e-01 80 chrI:3466834-3466914 1.07e-03 58_[+1(8.52e-05)]_14 chrIV:2664602-2664682 4.47e-02 10_[+2(1.20e-05)]_62 chrIII:6019919-6019999 4.60e-03 33_[+2(1.20e-05)]_39 chrI:4788592-4788672 5.24e-03 37_[+1(4.63e-05)]_35 chrII:2342168-2342248 6.59e-05 5_[+4(5.58e-05)]_14_[+5(8.11e-05)]_\ 30_[+3(2.55e-05)]_7 chrII:13477385-13477465 7.88e-02 15_[+1(8.52e-05)]_57 chrX:15860841-15860921 5.46e-02 80 chrI:14710987-14711067 5.49e-02 70_[+4(7.88e-05)]_2 chrII:11578494-11578574 1.16e-01 80 chrI:13284486-13284566 8.40e-01 80 chrII:9729329-9729409 4.50e-01 80 chrIV:8205410-8205490 1.11e-01 80 chrI:3908586-3908666 9.90e-03 68_[+3(7.20e-05)]_4 chrII:10100050-10100130 1.29e-01 80 chrIII:2805238-2805318 9.71e-04 21_[+3(2.55e-05)]_51 chrI:12520497-12520577 7.05e-01 80 chrIII:12818480-12818560 3.27e-01 80 chrIV:17421865-17421945 9.54e-02 66_[+3(2.55e-05)]_6 chrIV:13289503-13289583 4.53e-01 80 chrIII:9089587-9089667 1.31e-02 46_[+5(3.75e-05)]_26 chrV:13437667-13437747 8.72e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************