******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/lin-14.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:6402669-6402749 1.0000 80 chrV:1243170-1243250 1.0000 80 chrI:7948279-7948359 1.0000 80 chrIV:11350941-11351021 1.0000 80 chrV:348141-348221 1.0000 80 chrV:966328-966408 1.0000 80 chrV:6033673-6033753 1.0000 80 chrX:11476739-11476819 1.0000 80 chrX:11479604-11479684 1.0000 80 chrV:1367910-1367990 1.0000 80 chrV:2135521-2135601 1.0000 80 chrIII:9731469-9731549 1.0000 80 chrV:1480970-1481050 1.0000 80 chrI:14899441-14899521 1.0000 80 chrV:1327465-1327545 1.0000 80 chrV:2134510-2134590 1.0000 80 chrIV:7426199-7426279 1.0000 80 chrX:11475823-11475903 1.0000 80 chrX:1265508-1265588 1.0000 80 chrX:9774422-9774502 1.0000 80 chrV:1349959-1350039 1.0000 80 chrV:1418011-1418091 1.0000 80 chrV:14800544-14800624 1.0000 80 chrI:6340168-6340248 1.0000 80 chrV:1940632-1940712 1.0000 80 chrII:8962395-8962475 1.0000 80 chrV:3312427-3312507 1.0000 80 chrIV:15017113-15017193 1.0000 80 chrV:1364514-1364594 1.0000 80 chrX:8986601-8986681 1.0000 80 chrV:1229421-1229501 1.0000 80 chrIV:6622288-6622368 1.0000 80 chrI:8049571-8049651 1.0000 80 chrV:2056041-2056121 1.0000 80 chrIII:3437363-3437443 1.0000 80 chrII:6303376-6303456 1.0000 80 chrX:11474184-11474264 1.0000 80 chrIII:9698784-9698864 1.0000 80 chrIV:8067927-8068007 1.0000 80 chrI:3316671-3316751 1.0000 80 chrIV:12012620-12012700 1.0000 80 chrX:3414927-3415007 1.0000 80 chrX:15395879-15395959 1.0000 80 chrX:6251049-6251129 1.0000 80 chrI:9053456-9053536 1.0000 80 chrX:14357000-14357080 1.0000 80 chrV:635812-635892 1.0000 80 chrV:1935625-1935705 1.0000 80 chrIII:4019068-4019148 1.0000 80 chrX:16991573-16991653 1.0000 80 chrII:9757754-9757834 1.0000 80 chrV:4157454-4157534 1.0000 80 chrV:979853-979933 1.0000 80 chrX:15627920-15628000 1.0000 80 chrX:2139100-2139180 1.0000 80 chrI:4050668-4050748 1.0000 80 chrIV:5137953-5138033 1.0000 80 chrII:122164-122244 1.0000 80 chrI:10498050-10498130 1.0000 80 chrIV:9092182-9092262 1.0000 80 chrV:11506465-11506545 1.0000 80 chrV:6341174-6341254 1.0000 80 chrV:1486182-1486262 1.0000 80 chrIV:1766111-1766191 1.0000 80 chrI:7392236-7392316 1.0000 80 chrI:999244-999324 1.0000 80 chrX:14287992-14288072 1.0000 80 chrI:1100735-1100815 1.0000 80 chrX:11482788-11482868 1.0000 80 chrI:8278099-8278179 1.0000 80 chrV:1285873-1285953 1.0000 80 chrX:11481843-11481923 1.0000 80 chrIV:763835-763915 1.0000 80 chrX:16525752-16525832 1.0000 80 chrIV:4586145-4586225 1.0000 80 chrII:8589365-8589445 1.0000 80 chrIII:8287735-8287815 1.0000 80 chrII:1341593-1341673 1.0000 80 chrV:12530253-12530333 1.0000 80 chrI:5972012-5972092 1.0000 80 chrII:10759131-10759211 1.0000 80 chrV:11309112-11309192 1.0000 80 chrI:9845507-9845587 1.0000 80 chrV:20873291-20873371 1.0000 80 chrV:1627397-1627477 1.0000 80 chrIV:6836925-6837005 1.0000 80 chrV:9765786-9765866 1.0000 80 chrX:11462187-11462267 1.0000 80 chrV:8407150-8407230 1.0000 80 chrI:5544024-5544104 1.0000 80 chrII:2962701-2962781 1.0000 80 chrIV:6834863-6834943 1.0000 80 chrI:10280726-10280806 1.0000 80 chrV:2076166-2076246 1.0000 80 chrIV:11571456-11571536 1.0000 80 chrX:13638539-13638619 1.0000 80 chrV:3677367-3677447 1.0000 80 chrV:9633495-9633575 1.0000 80 chrV:13346041-13346121 1.0000 80 chrIV:10170988-10171068 1.0000 80 chrI:12675362-12675442 1.0000 80 chrIV:11710492-11710572 1.0000 80 chrII:2734888-2734968 1.0000 80 chrII:9260171-9260251 1.0000 80 chrV:8802398-8802478 1.0000 80 chrX:9798686-9798766 1.0000 80 chrII:4889006-4889086 1.0000 80 chrX:8481846-8481926 1.0000 80 chrIV:79371-79451 1.0000 80 chrX:7076570-7076650 1.0000 80 chrV:13807416-13807496 1.0000 80 chrX:6320931-6321011 1.0000 80 chrIII:6655995-6656075 1.0000 80 chrIII:10816175-10816255 1.0000 80 chrI:7993411-7993491 1.0000 80 chrII:5272068-5272148 1.0000 80 chrII:9281767-9281847 1.0000 80 chrV:1771904-1771984 1.0000 80 chrX:3957777-3957857 1.0000 80 chrIV:12464977-12465057 1.0000 80 chrIII:8782229-8782309 1.0000 80 chrIII:7488418-7488498 1.0000 80 chrV:2244891-2244971 1.0000 80 chrI:433670-433750 1.0000 80 chrV:14143784-14143864 1.0000 80 chrV:4523961-4524041 1.0000 80 chrI:6965656-6965736 1.0000 80 chrV:3344143-3344223 1.0000 80 chrI:6171655-6171735 1.0000 80 chrV:3410281-3410361 1.0000 80 chrIV:6956844-6956924 1.0000 80 chrI:7331999-7332079 1.0000 80 chrV:1341818-1341898 1.0000 80 chrI:4496709-4496789 1.0000 80 chrII:5276868-5276948 1.0000 80 chrIV:10402444-10402524 1.0000 80 chrX:11477871-11477951 1.0000 80 chrIV:6061115-6061195 1.0000 80 chrX:5982975-5983055 1.0000 80 chrIII:4967388-4967468 1.0000 80 chrIV:2664565-2664645 1.0000 80 chrIV:17427113-17427193 1.0000 80 chrV:12518887-12518967 1.0000 80 chrX:2464219-2464299 1.0000 80 chrI:4333942-4334022 1.0000 80 chrV:534359-534439 1.0000 80 chrX:4877049-4877129 1.0000 80 chrX:13009066-13009146 1.0000 80 chrV:1943649-1943729 1.0000 80 chrI:14181247-14181327 1.0000 80 chrV:2281679-2281759 1.0000 80 chrIII:11681661-11681741 1.0000 80 chrIV:5100282-5100362 1.0000 80 chrV:8663214-8663294 1.0000 80 chrIV:10971997-10972077 1.0000 80 chrII:6707672-6707752 1.0000 80 chrV:1887160-1887240 1.0000 80 chrIII:7723143-7723223 1.0000 80 chrX:4899862-4899942 1.0000 80 chrI:14631128-14631208 1.0000 80 chrIV:10979824-10979904 1.0000 80 chrV:7819722-7819802 1.0000 80 chrX:1961071-1961151 1.0000 80 chrX:16484853-16484933 1.0000 80 chrV:12961285-12961365 1.0000 80 chrIII:13271066-13271146 1.0000 80 chrX:10194643-10194723 1.0000 80 chrV:10757234-10757314 1.0000 80 chrX:6826026-6826106 1.0000 80 chrV:12211288-12211368 1.0000 80 chrX:14684559-14684639 1.0000 80 chrIII:9664687-9664767 1.0000 80 chrV:5961699-5961779 1.0000 80 chrIII:5827161-5827241 1.0000 80 chrII:10800312-10800392 1.0000 80 chrX:9803750-9803830 1.0000 80 chrIV:11793332-11793412 1.0000 80 chrV:7437728-7437808 1.0000 80 chrIV:12114704-12114784 1.0000 80 chrIV:11788680-11788760 1.0000 80 chrI:13065835-13065915 1.0000 80 chrI:7342597-7342677 1.0000 80 chrIII:10151902-10151982 1.0000 80 chrI:3675887-3675967 1.0000 80 chrI:5294567-5294647 1.0000 80 chrIII:5755367-5755447 1.0000 80 chrIII:2170741-2170821 1.0000 80 chrX:16483954-16484034 1.0000 80 chrII:4767779-4767859 1.0000 80 chrIV:12584298-12584378 1.0000 80 chrI:11595225-11595305 1.0000 80 chrV:9165472-9165552 1.0000 80 chrIV:12637489-12637569 1.0000 80 chrX:15634118-15634198 1.0000 80 chrI:4030670-4030750 1.0000 80 chrI:14764937-14765017 1.0000 80 chrX:11571898-11571978 1.0000 80 chrIII:9905548-9905628 1.0000 80 chrV:1366252-1366332 1.0000 80 chrI:10145315-10145395 1.0000 80 chrIV:664278-664358 1.0000 80 chrII:15194038-15194118 1.0000 80 chrIII:3811552-3811632 1.0000 80 chrV:11074581-11074661 1.0000 80 chrV:9225780-9225860 1.0000 80 chrII:1736531-1736611 1.0000 80 chrV:14322966-14323046 1.0000 80 chrIV:8040811-8040891 1.0000 80 chrX:5659808-5659888 1.0000 80 chrX:7129620-7129700 1.0000 80 chrX:9705724-9705804 1.0000 80 chrX:10068583-10068663 1.0000 80 chrIII:2656323-2656403 1.0000 80 chrIII:13127320-13127400 1.0000 80 chrX:15564510-15564590 1.0000 80 chrIII:3161766-3161846 1.0000 80 chrIII:4323312-4323392 1.0000 80 chrII:6148544-6148624 1.0000 80 chrIII:844157-844237 1.0000 80 chrX:5820218-5820298 1.0000 80 chrIII:3978567-3978647 1.0000 80 chrIII:5047371-5047451 1.0000 80 chrV:1155016-1155096 1.0000 80 chrX:6240437-6240517 1.0000 80 chrIII:13012114-13012194 1.0000 80 chrI:5599565-5599645 1.0000 80 chrX:12204468-12204548 1.0000 80 chrII:11602684-11602764 1.0000 80 chrX:3455687-3455767 1.0000 80 chrX:12643106-12643186 1.0000 80 chrII:6709138-6709218 1.0000 80 chrV:1890161-1890241 1.0000 80 chrV:11140494-11140574 1.0000 80 chrX:16263453-16263533 1.0000 80 chrX:13846184-13846264 1.0000 80 chrI:7883876-7883956 1.0000 80 chrII:4184158-4184238 1.0000 80 chrV:7884581-7884661 1.0000 80 chrI:6284771-6284851 1.0000 80 chrV:12517921-12518001 1.0000 80 chrV:11677607-11677687 1.0000 80 chrV:7822801-7822881 1.0000 80 chrII:2197679-2197759 1.0000 80 chrII:7714931-7715011 1.0000 80 chrV:12158546-12158626 1.0000 80 chrII:14036879-14036959 1.0000 80 chrV:3388505-3388585 1.0000 80 chrV:19352128-19352208 1.0000 80 chrIII:4612772-4612852 1.0000 80 chrIV:5915340-5915420 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_lin-14/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/lin-14.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.272 C 0.23 G 0.218 T 0.28 Background letter frequencies (from file dataset with add-one prior applied): A 0.272 C 0.23 G 0.218 T 0.28 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GARAAARA MEME-1 width = 8 sites = 98 llr = 736 E-value = 1.4e-043 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARAAARA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a678967 pos.-specific C :::::::: probability G a:432143 matrix T :::::::: bits 2.2 * 2.0 ** 1.8 ** 1.5 ** Relative 1.3 ** * Entropy 1.1 ******** (10.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAAAAAA consensus GGG GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAARA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:19352128-19352208 47 2.40e-05 TTAGTGAACC GAAAAAAA ACGGATAGAG chrIII:3978567-3978647 60 2.40e-05 AGTAAAGTGT GAAAAAAA ACAGAATAAG chrX:5820218-5820298 59 2.40e-05 AAAACTGGCG GAAAAAAA AGAGATATAG chrV:8663214-8663294 65 2.40e-05 gaagaagaag gaaaaaaa acgacgac chrIV:6061115-6061195 16 2.40e-05 TGAGAAGAGA GAAAAAAA GAAGATCCCG chrX:6320931-6321011 16 2.40e-05 AAGTGAAACA GAAAAAAA CCGAACAGAT chrIV:6836925-6837005 14 2.40e-05 CACTCTTGAA GAAAAAAA GCCGAGACAT chrV:12530253-12530333 26 2.40e-05 CATTGAGATA GAAAAAAA GATAGAATAA chrX:2139100-2139180 46 2.40e-05 TCTTTCAGCA GAAAAAAA GAGTCAGAGA chrX:9774422-9774502 25 2.40e-05 ATATGCGTTC GAAAAAAA GAAGGGGGAG chrX:11479604-11479684 64 2.40e-05 TTACGAAACA GAAAAAAA TTGATAAAA chrV:3388505-3388585 58 4.33e-05 TTCAACTAGT GAAAAAGA AACAGATACA chrV:10757234-10757314 5 4.33e-05 ACAA GAAAAAGA AATAAATTGT chrX:5982975-5983055 26 4.33e-05 aaagaaaaaa gaaaaaga agaagCTGAG chrV:13807416-13807496 56 4.33e-05 GAAAATGAGG GAAAAAGA GAGAAAGAGA chrI:10498050-10498130 64 4.33e-05 GTGTCGGGGA GAAAAAGA CGGGCGGGA chrII:122164-122244 50 4.33e-05 CACAGTGAGG GAAAAAGA GAAATAGAGA chrV:3312427-3312507 34 4.33e-05 GAGCCGCAGA GAAAAAGA GGGAACAGCG chrIV:7426199-7426279 73 4.33e-05 Cagtgataga gaaaaaga chrV:12158546-12158626 71 8.17e-05 GAGGCGAGAA GAAGAAAA TA chrII:6709138-6709218 53 8.17e-05 aagaagaaaa gagaaaaa ggagtgtgta chrX:3455687-3455767 31 8.17e-05 ATGAGCCACG GAGAAAAA CGCGGCAGCA chrIII:9905548-9905628 57 8.17e-05 GGGCATGACG Gaagaaaa aaccaaagaa chrI:5294567-5294647 2 8.17e-05 T GAGAAAAA TACAGAAATT chrIV:10979824-10979904 32 8.17e-05 AAGAGATGGA GAAGAAAA GGGAAGTCCG chrII:5276868-5276948 59 8.17e-05 CTCTGAAATG GAGAAAAA AGAGGCAAAA chrV:14143784-14143864 45 8.17e-05 agaggaaaac gaagaaaa ataagaagGA chrIII:6655995-6656075 53 8.17e-05 TCCGAATAGA GAGAAAAA GTGAGAGAAG chrX:8481846-8481926 43 8.17e-05 TTTTGCGCCT GAGAAAAA GGGTCCGAAG chrI:999244-999324 34 8.17e-05 AAAGAAATTA GAGAAAAA AGACCGGTCT chrIV:5137953-5138033 22 8.17e-05 AGAGACGATA GAGAAAAA ACGAGTGAGG chrV:1327465-1327545 29 8.17e-05 TCGACGAGAG GAGAAAAA GCAGGAAGAG chrV:1367910-1367990 52 8.17e-05 tgaagaagaa gaagaaaa aATTGGAGCT chrV:12517921-12518001 71 1.13e-04 GTTGGGATAT GAAGAAGA TA chrX:16484853-16484933 53 1.13e-04 AAATAAAAAA GAAGAAGA AGTCAGCGAC chrIV:5100282-5100362 70 1.13e-04 GAAAATgaga gagaaaga gag chrI:4496709-4496789 65 1.13e-04 TGCTACTACT gaagaaga aggagcaa chrIV:10170988-10171068 26 1.13e-04 TCCGAAGAGG GAGAAAGA GCGTGGCGCG chrI:8278099-8278179 68 1.13e-04 TGCgagggag gaagaaga gagat chrII:9757754-9757834 72 1.13e-04 AAATAAAGAT GAAGAAGA A chrX:15395879-15395959 44 1.13e-04 AGCGAAAAAG GAAGAAGA CGGAGAAAAG chrV:2135521-2135601 57 1.13e-04 taagaaggaa gaagaaga ggagaagaTG chrI:7948279-7948359 55 1.13e-04 CAAAGTAGCG GAAGAAGA GAAGAGTGTT chrV:5961699-5961779 60 1.32e-04 GGCACAGCAA GAAAAAAG GGGGAACCGA chrX:10194643-10194723 13 1.32e-04 ATCTCCAGCC GAAAAAAG ACACGTCTCT chrI:7331999-7332079 41 1.32e-04 TCTCTGATCC GAAAAAAG ACTCCATTGT chrII:9281767-9281847 52 1.32e-04 CGAGAGAAAA GAAAAAAG AAAACGAACT chrIV:11571456-11571536 2 1.32e-04 G GAAAAAAG AAAAGAAACA chrIII:3437363-3437443 7 1.32e-04 ttTGGT GAAAAAAG ATGAAACTGA chrIII:9731469-9731549 19 1.32e-04 ATGGGCGGCG GAAAAAAG TTGAAAACTC chrIII:4612772-4612852 62 1.63e-04 TAATCAAGGT GAAAAAGG GATACATAGG chrX:12643106-12643186 54 1.63e-04 GGGATTGGGA GAGGAAAA ACTTGAAAAG chrV:1366252-1366332 69 1.63e-04 AACGAAAAAT GAAAAAGG TGGT chrX:1961071-1961151 8 1.63e-04 TCTGTTC GAGGAAAA ACGGCACTCT chrI:9053456-9053536 38 1.63e-04 ACGTCCCAAG GAAAAAGG ACCACACATT chrIII:5755367-5755447 50 1.75e-04 gagagagaga gagGAAGA GATGAGGAGA chrV:11309112-11309192 2 1.75e-04 t gaggaaga tAGAACCCTC chrII:7714931-7715011 38 1.94e-04 TGAAGAGATT GAAAGAAA CACAATACAA chrV:1364514-1364594 38 1.94e-04 TACTTCGTTA GAAAGAAA ACGGGCGGCC chrX:9705724-9705804 22 2.41e-04 AAGAAATGAT GAAAGAGA GTCCCCGTTT chrII:15194038-15194118 72 2.41e-04 ATAagagaat gaaagaga g chrX:11571898-11571978 67 2.41e-04 CGGgaataag gaagaaag aagaag chrIV:11788680-11788760 17 2.41e-04 AGGCACTTTT GAAAGAGA CTTCTCTGTG chrIV:12114704-12114784 50 2.41e-04 GAGATATTTG GAAAGAGA AAAGGATGAA chrV:7437728-7437808 24 2.41e-04 AGTAGACACA GAAAGAGA GCGGACATTC chrX:14287992-14288072 62 2.41e-04 TGGTGGTGGT GAAGAAAG GATAGACGAG chrIII:844157-844237 46 2.65e-04 TCGTTGATGG GAAGAAGG CTGCTGTGTT chrV:8802398-8802478 2 2.65e-04 A GAGAAAGG AAGATGGCGG chrII:2734888-2734968 34 2.96e-04 AACAAAAAAT GAAGGAAA AAACACACTG chrII:8962395-8962475 53 2.96e-04 GTGTAGTATA GAGAGAAA TAAACATTTA chrI:5599565-5599645 1 3.33e-04 . GAGAGAGA GACACAGTGA chrIII:3811552-3811632 67 3.33e-04 TCATCTCAAT GAGAGAGA TGTTTG chrV:2134510-2134590 71 3.33e-04 GTCGGAACCA GAGAGAGA TC chrIII:9664687-9664767 64 3.62e-04 GCTCAAAGAG GAGGAAGG ACCAAAGTT chrIV:10402444-10402524 50 3.62e-04 TTGTGTGCTT GAAAAGAA TGTGAGGGAG chrV:9765786-9765866 8 3.62e-04 CTGTGGT GAGGAAGG ATATTGAGAA chrV:1486182-1486262 9 3.62e-04 GGGATGAG GAGGAAGG AATGACGTTG chrII:4767779-4767859 2 3.93e-04 T GAAAAGGA TAAGACCGAC chrX:9803750-9803830 30 3.93e-04 TCAAAGGATA GAAAGAAG ACTGACGTAA chrI:10280726-10280806 66 3.93e-04 GGTTGGTTTA GAAAGAAG TGAAATA chrII:8589365-8589445 65 3.93e-04 ATGAGAAAAT GAAAGAAG AGGAGAAA chrX:11475823-11475903 6 3.93e-04 AGAAT GAAAGAAG AGAGTTGACG chrI:5544024-5544104 39 4.28e-04 AGTTGTTGTC GAGGGAGA GCCGCCAGGA chrI:14764937-14765017 45 4.59e-04 GCCTagaaag gaagagaa gggacagaaa chrIV:8067927-8068007 47 4.59e-04 GAAATAGAAT GAGAAGAA TACGGGGCAC chrV:1418011-1418091 62 4.59e-04 TTGTGACCCC GAGAAGAA TTACAAAATG chrV:1243170-1243250 16 4.59e-04 AAGAAATCAT GAAGAGAA GTTGTGTGTA chrV:8407150-8407230 31 5.08e-04 atggtaaaaa gagagaag gacaagGCGT chrV:4157454-4157534 27 5.08e-04 AGAGCGAGTT GAGAGAAG TGATAAGAAA chrV:966328-966408 50 5.08e-04 TCTTCAAGTA GAGAGAAG CCGTCAGATA chrI:6171655-6171735 66 5.28e-04 GTTGAACGGT GAGAGAGG ATCGGAA chrII:6707672-6707752 59 5.88e-04 GATGAATTGA GAGGAGGA GTGGAGTAGA chrV:1771904-1771984 35 5.88e-04 GAACACGGGA GAGGAGGA GGAGATGATG chrIV:4586145-4586225 17 5.88e-04 AACCTCATTA GAGGAGGA GCTAGGAAGG chrIII:13127320-13127400 53 6.48e-04 CCATCTTTTT GAGAAGAG TCCTATGCTT chrV:12518887-12518967 60 6.48e-04 CTGAGAGCAA GAAGAGAG CAGTTTGGAA chrV:7884581-7884661 56 7.63e-04 TCAAAGCAGA GAGGGGAA GACAGATAAA chrIV:11350941-11351021 26 8.51e-04 TAGATTTCAA AAAAAAAA GAAGTAGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAARA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:19352128-19352208 2.4e-05 46_[+1]_26 chrIII:3978567-3978647 2.4e-05 59_[+1]_13 chrX:5820218-5820298 2.4e-05 58_[+1]_14 chrV:8663214-8663294 2.4e-05 64_[+1]_8 chrIV:6061115-6061195 2.4e-05 15_[+1]_57 chrX:6320931-6321011 2.4e-05 15_[+1]_57 chrIV:6836925-6837005 2.4e-05 13_[+1]_59 chrV:12530253-12530333 2.4e-05 25_[+1]_47 chrX:2139100-2139180 2.4e-05 45_[+1]_27 chrX:9774422-9774502 2.4e-05 24_[+1]_48 chrX:11479604-11479684 2.4e-05 63_[+1]_9 chrV:3388505-3388585 4.3e-05 57_[+1]_15 chrV:10757234-10757314 4.3e-05 4_[+1]_68 chrX:5982975-5983055 4.3e-05 25_[+1]_47 chrV:13807416-13807496 4.3e-05 55_[+1]_17 chrI:10498050-10498130 4.3e-05 63_[+1]_9 chrII:122164-122244 4.3e-05 49_[+1]_23 chrV:3312427-3312507 4.3e-05 33_[+1]_39 chrIV:7426199-7426279 4.3e-05 72_[+1] chrV:12158546-12158626 8.2e-05 70_[+1]_2 chrII:6709138-6709218 8.2e-05 52_[+1]_20 chrX:3455687-3455767 8.2e-05 30_[+1]_42 chrIII:9905548-9905628 8.2e-05 56_[+1]_16 chrI:5294567-5294647 8.2e-05 1_[+1]_71 chrIV:10979824-10979904 8.2e-05 31_[+1]_41 chrII:5276868-5276948 8.2e-05 58_[+1]_14 chrV:14143784-14143864 8.2e-05 44_[+1]_28 chrIII:6655995-6656075 8.2e-05 52_[+1]_20 chrX:8481846-8481926 8.2e-05 42_[+1]_30 chrI:999244-999324 8.2e-05 33_[+1]_39 chrIV:5137953-5138033 8.2e-05 21_[+1]_51 chrV:1327465-1327545 8.2e-05 28_[+1]_44 chrV:1367910-1367990 8.2e-05 51_[+1]_21 chrV:12517921-12518001 0.00011 70_[+1]_2 chrX:16484853-16484933 0.00011 52_[+1]_20 chrIV:5100282-5100362 0.00011 69_[+1]_3 chrI:4496709-4496789 0.00011 64_[+1]_8 chrIV:10170988-10171068 0.00011 25_[+1]_47 chrI:8278099-8278179 0.00011 67_[+1]_5 chrII:9757754-9757834 0.00011 71_[+1]_1 chrX:15395879-15395959 0.00011 43_[+1]_29 chrV:2135521-2135601 0.00011 56_[+1]_16 chrI:7948279-7948359 0.00011 54_[+1]_18 chrV:5961699-5961779 0.00013 59_[+1]_13 chrX:10194643-10194723 0.00013 12_[+1]_60 chrI:7331999-7332079 0.00013 40_[+1]_32 chrII:9281767-9281847 0.00013 51_[+1]_21 chrIV:11571456-11571536 0.00013 1_[+1]_71 chrIII:3437363-3437443 0.00013 6_[+1]_66 chrIII:9731469-9731549 0.00013 18_[+1]_54 chrIII:4612772-4612852 0.00016 61_[+1]_11 chrX:12643106-12643186 0.00016 53_[+1]_19 chrV:1366252-1366332 0.00016 68_[+1]_4 chrX:1961071-1961151 0.00016 7_[+1]_65 chrI:9053456-9053536 0.00016 37_[+1]_35 chrIII:5755367-5755447 0.00018 49_[+1]_23 chrV:11309112-11309192 0.00018 1_[+1]_71 chrII:7714931-7715011 0.00019 37_[+1]_35 chrV:1364514-1364594 0.00019 37_[+1]_35 chrX:9705724-9705804 0.00024 21_[+1]_51 chrII:15194038-15194118 0.00024 71_[+1]_1 chrX:11571898-11571978 0.00024 66_[+1]_6 chrIV:11788680-11788760 0.00024 16_[+1]_56 chrIV:12114704-12114784 0.00024 49_[+1]_23 chrV:7437728-7437808 0.00024 23_[+1]_49 chrX:14287992-14288072 0.00024 61_[+1]_11 chrIII:844157-844237 0.00027 45_[+1]_27 chrV:8802398-8802478 0.00027 1_[+1]_71 chrII:2734888-2734968 0.0003 33_[+1]_39 chrII:8962395-8962475 0.0003 52_[+1]_20 chrI:5599565-5599645 0.00033 [+1]_72 chrIII:3811552-3811632 0.00033 66_[+1]_6 chrV:2134510-2134590 0.00033 70_[+1]_2 chrIII:9664687-9664767 0.00036 63_[+1]_9 chrIV:10402444-10402524 0.00036 49_[+1]_23 chrV:9765786-9765866 0.00036 7_[+1]_65 chrV:1486182-1486262 0.00036 8_[+1]_64 chrII:4767779-4767859 0.00039 1_[+1]_71 chrX:9803750-9803830 0.00039 29_[+1]_43 chrI:10280726-10280806 0.00039 65_[+1]_7 chrII:8589365-8589445 0.00039 64_[+1]_8 chrX:11475823-11475903 0.00039 5_[+1]_67 chrI:5544024-5544104 0.00043 38_[+1]_34 chrI:14764937-14765017 0.00046 44_[+1]_28 chrIV:8067927-8068007 0.00046 46_[+1]_26 chrV:1418011-1418091 0.00046 61_[+1]_11 chrV:1243170-1243250 0.00046 15_[+1]_57 chrV:8407150-8407230 0.00051 30_[+1]_42 chrV:4157454-4157534 0.00051 26_[+1]_46 chrV:966328-966408 0.00051 49_[+1]_23 chrI:6171655-6171735 0.00053 65_[+1]_7 chrII:6707672-6707752 0.00059 58_[+1]_14 chrV:1771904-1771984 0.00059 34_[+1]_38 chrIV:4586145-4586225 0.00059 16_[+1]_56 chrIII:13127320-13127400 0.00065 52_[+1]_20 chrV:12518887-12518967 0.00065 59_[+1]_13 chrV:7884581-7884661 0.00076 55_[+1]_17 chrIV:11350941-11351021 0.00085 25_[+1]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAARA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARAAARA width=8 seqs=98 chrV:19352128-19352208 ( 47) GAAAAAAA 1 chrIII:3978567-3978647 ( 60) GAAAAAAA 1 chrX:5820218-5820298 ( 59) GAAAAAAA 1 chrV:8663214-8663294 ( 65) GAAAAAAA 1 chrIV:6061115-6061195 ( 16) GAAAAAAA 1 chrX:6320931-6321011 ( 16) GAAAAAAA 1 chrIV:6836925-6837005 ( 14) GAAAAAAA 1 chrV:12530253-12530333 ( 26) GAAAAAAA 1 chrX:2139100-2139180 ( 46) GAAAAAAA 1 chrX:9774422-9774502 ( 25) GAAAAAAA 1 chrX:11479604-11479684 ( 64) GAAAAAAA 1 chrV:3388505-3388585 ( 58) GAAAAAGA 1 chrV:10757234-10757314 ( 5) GAAAAAGA 1 chrX:5982975-5983055 ( 26) GAAAAAGA 1 chrV:13807416-13807496 ( 56) GAAAAAGA 1 chrI:10498050-10498130 ( 64) GAAAAAGA 1 chrII:122164-122244 ( 50) GAAAAAGA 1 chrV:3312427-3312507 ( 34) GAAAAAGA 1 chrIV:7426199-7426279 ( 73) GAAAAAGA 1 chrV:12158546-12158626 ( 71) GAAGAAAA 1 chrII:6709138-6709218 ( 53) GAGAAAAA 1 chrX:3455687-3455767 ( 31) GAGAAAAA 1 chrIII:9905548-9905628 ( 57) GAAGAAAA 1 chrI:5294567-5294647 ( 2) GAGAAAAA 1 chrIV:10979824-10979904 ( 32) GAAGAAAA 1 chrII:5276868-5276948 ( 59) GAGAAAAA 1 chrV:14143784-14143864 ( 45) GAAGAAAA 1 chrIII:6655995-6656075 ( 53) GAGAAAAA 1 chrX:8481846-8481926 ( 43) GAGAAAAA 1 chrI:999244-999324 ( 34) GAGAAAAA 1 chrIV:5137953-5138033 ( 22) GAGAAAAA 1 chrV:1327465-1327545 ( 29) GAGAAAAA 1 chrV:1367910-1367990 ( 52) GAAGAAAA 1 chrV:12517921-12518001 ( 71) GAAGAAGA 1 chrX:16484853-16484933 ( 53) GAAGAAGA 1 chrIV:5100282-5100362 ( 70) GAGAAAGA 1 chrI:4496709-4496789 ( 65) GAAGAAGA 1 chrIV:10170988-10171068 ( 26) GAGAAAGA 1 chrI:8278099-8278179 ( 68) GAAGAAGA 1 chrII:9757754-9757834 ( 72) GAAGAAGA 1 chrX:15395879-15395959 ( 44) GAAGAAGA 1 chrV:2135521-2135601 ( 57) GAAGAAGA 1 chrI:7948279-7948359 ( 55) GAAGAAGA 1 chrV:5961699-5961779 ( 60) GAAAAAAG 1 chrX:10194643-10194723 ( 13) GAAAAAAG 1 chrI:7331999-7332079 ( 41) GAAAAAAG 1 chrII:9281767-9281847 ( 52) GAAAAAAG 1 chrIV:11571456-11571536 ( 2) GAAAAAAG 1 chrIII:3437363-3437443 ( 7) GAAAAAAG 1 chrIII:9731469-9731549 ( 19) GAAAAAAG 1 chrIII:4612772-4612852 ( 62) GAAAAAGG 1 chrX:12643106-12643186 ( 54) GAGGAAAA 1 chrV:1366252-1366332 ( 69) GAAAAAGG 1 chrX:1961071-1961151 ( 8) GAGGAAAA 1 chrI:9053456-9053536 ( 38) GAAAAAGG 1 chrIII:5755367-5755447 ( 50) GAGGAAGA 1 chrV:11309112-11309192 ( 2) GAGGAAGA 1 chrII:7714931-7715011 ( 38) GAAAGAAA 1 chrV:1364514-1364594 ( 38) GAAAGAAA 1 chrX:9705724-9705804 ( 22) GAAAGAGA 1 chrII:15194038-15194118 ( 72) GAAAGAGA 1 chrX:11571898-11571978 ( 67) GAAGAAAG 1 chrIV:11788680-11788760 ( 17) GAAAGAGA 1 chrIV:12114704-12114784 ( 50) GAAAGAGA 1 chrV:7437728-7437808 ( 24) GAAAGAGA 1 chrX:14287992-14288072 ( 62) GAAGAAAG 1 chrIII:844157-844237 ( 46) GAAGAAGG 1 chrV:8802398-8802478 ( 2) GAGAAAGG 1 chrII:2734888-2734968 ( 34) GAAGGAAA 1 chrII:8962395-8962475 ( 53) GAGAGAAA 1 chrI:5599565-5599645 ( 1) GAGAGAGA 1 chrIII:3811552-3811632 ( 67) GAGAGAGA 1 chrV:2134510-2134590 ( 71) GAGAGAGA 1 chrIII:9664687-9664767 ( 64) GAGGAAGG 1 chrIV:10402444-10402524 ( 50) GAAAAGAA 1 chrV:9765786-9765866 ( 8) GAGGAAGG 1 chrV:1486182-1486262 ( 9) GAGGAAGG 1 chrII:4767779-4767859 ( 2) GAAAAGGA 1 chrX:9803750-9803830 ( 30) GAAAGAAG 1 chrI:10280726-10280806 ( 66) GAAAGAAG 1 chrII:8589365-8589445 ( 65) GAAAGAAG 1 chrX:11475823-11475903 ( 6) GAAAGAAG 1 chrI:5544024-5544104 ( 39) GAGGGAGA 1 chrI:14764937-14765017 ( 45) GAAGAGAA 1 chrIV:8067927-8068007 ( 47) GAGAAGAA 1 chrV:1418011-1418091 ( 62) GAGAAGAA 1 chrV:1243170-1243250 ( 16) GAAGAGAA 1 chrV:8407150-8407230 ( 31) GAGAGAAG 1 chrV:4157454-4157534 ( 27) GAGAGAAG 1 chrV:966328-966408 ( 50) GAGAGAAG 1 chrI:6171655-6171735 ( 66) GAGAGAGG 1 chrII:6707672-6707752 ( 59) GAGGAGGA 1 chrV:1771904-1771984 ( 35) GAGGAGGA 1 chrIV:4586145-4586225 ( 17) GAGGAGGA 1 chrIII:13127320-13127400 ( 53) GAGAAGAG 1 chrV:12518887-12518967 ( 60) GAAGAGAG 1 chrV:7884581-7884661 ( 56) GAGGGGAA 1 chrIV:11350941-11351021 ( 26) AAAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAARA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.74794 E= 1.4e-043 -473 -1326 218 -1326 188 -1326 -1326 -1326 124 -1326 71 -1326 131 -1326 58 -1326 151 -1326 4 -1326 169 -1326 -83 -1326 107 -1326 97 -1326 142 -1326 34 -1326 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAARA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 98 E= 1.4e-043 0.010204 0.000000 0.989796 0.000000 1.000000 0.000000 0.000000 0.000000 0.642857 0.000000 0.357143 0.000000 0.673469 0.000000 0.326531 0.000000 0.775510 0.000000 0.224490 0.000000 0.877551 0.000000 0.122449 0.000000 0.571429 0.000000 0.428571 0.000000 0.724490 0.000000 0.275510 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAARA MEME-1 regular expression -------------------------------------------------------------------------------- GA[AG][AG][AG]A[AG][AG] -------------------------------------------------------------------------------- Time 5.21 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTYTCTY MEME-2 width = 8 sites = 98 llr = 719 E-value = 1.8e-036 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTYTCTY MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 2225:9:6 probability G :::::::: matrix T 8885a1a4 bits 2.2 2.0 1.8 * * 1.5 *** Relative 1.3 * *** Entropy 1.1 *** **** (10.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTCTC consensus C CT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTCTY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:4184158-4184238 3 2.09e-05 TC TTTCTCTC GTCCATCCTC chrIII:2656323-2656403 63 2.09e-05 ACTATTTCTC TTTCTCTC CGGGGTAAGG chrIV:10971997-10972077 16 2.09e-05 ACAGACCTTT TTTCTCTC TATTTTTCAT chrI:14181247-14181327 68 2.09e-05 TTTATTCATA TTTCTCTC CAGCC chrI:4333942-4334022 23 2.09e-05 CTGTTATCTC TTTCTCTC TTTTTTGCAT chrX:6320931-6321011 48 2.09e-05 TTTTTTCTCA TTTCTCTC TTTCCCAGCG chrX:9798686-9798766 59 2.09e-05 CCAAATATCT TTTCTCTC CTTTTCCGTT chrIV:6834863-6834943 21 2.09e-05 CAACCCTCTC TTTCTCTC TCTCCCTTTT chrIV:6836925-6837005 62 2.09e-05 ACCCATTCAT TTTCTCTC ACTCTTCCGG chrX:16525752-16525832 15 2.09e-05 TCTTTTTCTA TTTCTCTC GATTGTCAGT chrV:979853-979933 22 2.09e-05 CCATTCCATT TTTCTCTC TGCTACTCTC chrIII:4019068-4019148 39 2.09e-05 TCCCGTCGTT TTTCTCTC CGCGCCCTCT chrV:1940632-1940712 26 2.09e-05 TTGAGCACTC TTTCTCTC TTCTTATACT chrV:1349959-1350039 71 2.09e-05 ctctcatcct tttctctc tc chrV:348141-348221 6 2.09e-05 CTCAC TTTCTCTC TCTCGATAAT chrI:6402669-6402749 28 2.09e-05 ACACTATCTG TTTCTCTC AATTTCATTA chrV:11140494-11140574 7 4.64e-05 ACAATT TTTTTCTC AAATACCTTT chrIII:4323312-4323392 50 4.64e-05 AAGCTGTGTC TTTTTCTC TAACCTCTCT chrV:14322966-14323046 41 4.64e-05 TAGTCAAGGC TTTTTCTC TGTTTCTCTT chrX:15634118-15634198 40 4.64e-05 TCTTATTTGC TTTTTCTC CTTCTCTTGT chrIII:2170741-2170821 36 4.64e-05 TCTTCTTCAT TTTTTCTC TTTTTTCCGA chrII:10800312-10800392 56 4.64e-05 gatgTTTTCT TTTTTCTC TATCTCTTCT chrIII:13271066-13271146 68 4.64e-05 ctttttctcc tttttctc cctcc chrIV:6061115-6061195 64 4.64e-05 TCATTCTTTT TTTTTCTC TTTATTCGA chrV:3410281-3410361 39 4.64e-05 CTGTTCCCTC TTTTTCTC TGCGGCTCTC chrV:1935625-1935705 62 4.64e-05 TGGGCACTAA TTTTTCTC TTATCTCAAA chrIV:6622288-6622368 71 4.64e-05 TTTCGTAATC TTTTTCTC TT chrIII:3161766-3161846 17 7.19e-05 ATCTAACCAC TTTCTCTT ACCCCCTCGT chrX:7129620-7129700 46 7.19e-05 GTTGTGTCTA TTTCTCTT GTTATCTCTT chrV:7437728-7437808 61 7.19e-05 AATGGCGCCG TTTCTCTT GAACAAGTGA chrIII:11681661-11681741 20 7.19e-05 TTTCCCTCCA TTTCTCTT CTTTTTTtca chrV:2281679-2281759 64 7.19e-05 GGCAACATAA TTTCTCTT AACTCTCTT chrV:1367910-1367990 1 7.19e-05 . TTTCTCTT CTCCATTTTT chrII:4767779-4767859 39 1.03e-04 CATTTTCTTA TTTTTCTT CCGTCAACCT chrI:3675887-3675967 37 1.03e-04 CCCACCCAAC TTTTTCTT TTCTTCATCT chrI:13065835-13065915 47 1.03e-04 CTCCAGCCGA TTTTTCTT CGTTTTTTCC chrV:2244891-2244971 37 1.03e-04 TTCAATTTCC TTTTTCTT CTCCGTCTCT chrII:5272068-5272148 15 1.03e-04 TATCttctct tttttctt tttttttcct chrIII:10816175-10816255 11 1.03e-04 GTTACACTAT TTTTTCTT TAGGGACTCT chrII:10759131-10759211 45 1.03e-04 ctacgtcttc tttttctt ctCTATCGAC chrIV:9092182-9092262 21 1.03e-04 Attctccttc tttttctt cgtcttcgtc chrX:11474184-11474264 20 1.03e-04 GAGGTCGCAC TTTTTCTT TGCTTTTCAT chrV:12158546-12158626 2 1.20e-04 C TTCCTCTC TCTGTGCTCT chrV:11677607-11677687 66 1.37e-04 tcattttctt cttctctC GTAACAG chrII:8962395-8962475 6 1.37e-04 GCCGC CTTCTCTC ATAAAGTGAG chrX:6240437-6240517 62 1.58e-04 GTTTCTCCAG TTCTTCTC ACTTGTCGTC chrX:5659808-5659888 49 1.58e-04 GGGCATTGTC TTCTTCTC ATCTCCCTCC chrV:534359-534439 54 1.58e-04 CCATCTGCGT TTCTTCTC CGTATCTTAT chrIV:6956844-6956924 31 1.58e-04 GTTCTTCTTC TTCTTCTC ATCACCAAAT chrX:5820218-5820298 25 1.96e-04 TTATCCATAC TCTCTCTC ACCCCACACC chrX:10194643-10194723 26 1.96e-04 AAAAGACACG TCTCTCTC GCTACCAGGC chrIV:2664565-2664645 69 1.96e-04 tatccctgtc tctctctc tctc chrI:7993411-7993491 9 1.96e-04 CTCCGCCC CTTTTCTC TAATTGCTTC chrI:5972012-5972092 32 1.96e-04 CTTCCTCATT CTTTTCTC CGTCCATTTA chrV:1943649-1943729 36 2.17e-04 Gcctttcttc ttcctctt ctttcctcat chrII:1341593-1341673 61 2.17e-04 GCTCTTCTTC TTCCTCTT CTCCCCCATT chrIII:3811552-3811632 47 2.59e-04 ACACTTGTCT CTTCTCTT TTTCATCTCA chrV:9165472-9165552 45 2.59e-04 ATAAAAATTG CTTCTCTT CAAGTACGGC chrIV:12584298-12584378 18 2.59e-04 CCCGTGCGTG CTTCTCTT ATTCTCCCTA chrX:4899862-4899942 42 2.59e-04 cccccccccT CTTCTCTT ACTCTGCTTC chrIV:17427113-17427193 46 2.59e-04 GCCCTCCGGC TCTTTCTC TGCATCTCGC chrV:3344143-3344223 38 2.59e-04 ACAGAAATAT CTTCTCTT TTTTTCTATC chrX:15627920-15628000 29 2.59e-04 CAAAACTTCA TCTTTCTC CCCCCCCCCC chrX:14357000-14357080 17 2.59e-04 TTATGTTACC CTTCTCTT CCCCATTTTA chrX:10068583-10068663 61 2.85e-04 AAACTCATTC TTCTTCTT TTTATCACCA chrIV:10979824-10979904 1 2.85e-04 . TTCTTCTT CAACTTTCTC chrI:8049571-8049651 13 2.85e-04 TCATCTCTGT TTCTTCTT TTTTTTTCAA chrV:7822801-7822881 5 3.31e-04 GCGA TCTCTCTT GTTGCTCCTC chrV:12211288-12211368 70 3.31e-04 TATGTGTCTA TCTCTCTT TCT chrX:1961071-1961151 23 3.31e-04 AAAACGGCAC TCTCTCTT ACTGCAAAGG chrIII:7723143-7723223 36 3.31e-04 TCCTTCGCTC CTTTTCTT TTCCCTCTTC chrI:9845507-9845587 30 3.31e-04 CTTTTTTTGC CTTTTCTT ACCCCAATTT chrX:11482788-11482868 44 3.31e-04 TGAACGCGAC TCTCTCTT GCTCTCTCGT chrI:999244-999324 71 3.31e-04 TTCTCGATCC CTTTTCTT CT chrIII:3978567-3978647 6 4.27e-04 TTCGG TTTTTTTC CGAGGTGGCG chrIII:10151902-10151982 43 4.27e-04 CGTCCCCACC CTCCTCTC CATCCCCCAC chrX:6826026-6826106 10 4.27e-04 CTATCTGTT TTTTTTTC AGTTGTTGTT chrV:14143784-14143864 73 4.27e-04 CGCCTTCTTT TTTTTTTC chrIII:13127320-13127400 28 4.90e-04 TCCCTCCCCC CTCTTCTC ATGCCGCCCA chrV:12518887-12518967 10 4.90e-04 ATTTGTCGT TTTCTTTT TCATTGTCTC chrI:1100735-1100815 27 4.90e-04 AAATACTCCC TCCCTCTC AAAATGCAAC chrV:2056041-2056121 45 4.90e-04 CCTTTCTCTG TTTCTTTT ATGTGATGTA chrIV:5915340-5915420 9 5.76e-04 TTGCCGTT TCCTTCTC CCTCTACTCC chrI:5294567-5294647 23 5.76e-04 AGAAATTGTG TTTTTTTT GTTCGTGTTG chrV:9633495-9633575 67 5.76e-04 AGAAAACTTT TCCTTCTC CTCCAC chrII:1736531-1736611 12 6.31e-04 TCTCTGTCTA TCCCTCTT CTGATTGCGT chrIII:4967388-4967468 55 6.31e-04 CTTTTGCTCA CTCTTCTT CTATAAGATT chrIV:763835-763915 44 6.31e-04 CGTCCTTGTC CTCTTCTT CGCCCAACCA chrV:6341174-6341254 9 6.90e-04 TTCTTCAT TTCCTTTC GTTTTTCCAT chrI:10145315-10145395 73 7.32e-04 TTCGGGGGTC CCTTTCTT chrIV:11788680-11788760 56 7.32e-04 GCCTTCTCTA CTTCTTTC CAACATTGAA chrV:9225780-9225860 60 8.04e-04 GGACAACATG CTTTTTTC CCGAAAAGCT chrV:1418011-1418091 44 8.30e-04 TACATGTTGC TTCCTTTT TTGTGACCCC chrIII:9698784-9698864 32 8.92e-04 TTTGTTATCA TCTTTTTC AGTTAAATTT chrIII:8782229-8782309 7 9.23e-04 TCCACA TTCTTTTT ATTGTTCTCT chrX:12204468-12204548 7 1.04e-03 TCCGCT TCTTTTTT GTATCTATCC chrV:6033673-6033753 21 1.04e-03 GCCAAATGAC TCTTTTTT GAGTCTTTTT chrII:4889006-4889086 23 1.06e-03 ACGTATTTTG TTGCTCTC TATTTCTCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTCTY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:4184158-4184238 2.1e-05 2_[+2]_70 chrIII:2656323-2656403 2.1e-05 62_[+2]_10 chrIV:10971997-10972077 2.1e-05 15_[+2]_57 chrI:14181247-14181327 2.1e-05 67_[+2]_5 chrI:4333942-4334022 2.1e-05 22_[+2]_50 chrX:6320931-6321011 2.1e-05 47_[+2]_25 chrX:9798686-9798766 2.1e-05 58_[+2]_14 chrIV:6834863-6834943 2.1e-05 20_[+2]_52 chrIV:6836925-6837005 2.1e-05 61_[+2]_11 chrX:16525752-16525832 2.1e-05 14_[+2]_58 chrV:979853-979933 2.1e-05 21_[+2]_51 chrIII:4019068-4019148 2.1e-05 38_[+2]_34 chrV:1940632-1940712 2.1e-05 25_[+2]_47 chrV:1349959-1350039 2.1e-05 70_[+2]_2 chrV:348141-348221 2.1e-05 5_[+2]_67 chrI:6402669-6402749 2.1e-05 27_[+2]_45 chrV:11140494-11140574 4.6e-05 6_[+2]_66 chrIII:4323312-4323392 4.6e-05 49_[+2]_23 chrV:14322966-14323046 4.6e-05 40_[+2]_32 chrX:15634118-15634198 4.6e-05 39_[+2]_33 chrIII:2170741-2170821 4.6e-05 35_[+2]_37 chrII:10800312-10800392 4.6e-05 55_[+2]_17 chrIII:13271066-13271146 4.6e-05 67_[+2]_5 chrIV:6061115-6061195 4.6e-05 63_[+2]_9 chrV:3410281-3410361 4.6e-05 38_[+2]_34 chrV:1935625-1935705 4.6e-05 61_[+2]_11 chrIV:6622288-6622368 4.6e-05 70_[+2]_2 chrIII:3161766-3161846 7.2e-05 16_[+2]_56 chrX:7129620-7129700 7.2e-05 45_[+2]_27 chrV:7437728-7437808 7.2e-05 60_[+2]_12 chrIII:11681661-11681741 7.2e-05 19_[+2]_53 chrV:2281679-2281759 7.2e-05 63_[+2]_9 chrV:1367910-1367990 7.2e-05 [+2]_72 chrII:4767779-4767859 0.0001 38_[+2]_34 chrI:3675887-3675967 0.0001 36_[+2]_36 chrI:13065835-13065915 0.0001 46_[+2]_26 chrV:2244891-2244971 0.0001 36_[+2]_36 chrII:5272068-5272148 0.0001 14_[+2]_58 chrIII:10816175-10816255 0.0001 10_[+2]_62 chrII:10759131-10759211 0.0001 44_[+2]_28 chrIV:9092182-9092262 0.0001 20_[+2]_52 chrX:11474184-11474264 0.0001 19_[+2]_53 chrV:12158546-12158626 0.00012 1_[+2]_71 chrV:11677607-11677687 0.00014 65_[+2]_7 chrII:8962395-8962475 0.00014 5_[+2]_67 chrX:6240437-6240517 0.00016 61_[+2]_11 chrX:5659808-5659888 0.00016 48_[+2]_24 chrV:534359-534439 0.00016 53_[+2]_19 chrIV:6956844-6956924 0.00016 30_[+2]_42 chrX:5820218-5820298 0.0002 24_[+2]_48 chrX:10194643-10194723 0.0002 25_[+2]_47 chrIV:2664565-2664645 0.0002 68_[+2]_4 chrI:7993411-7993491 0.0002 8_[+2]_64 chrI:5972012-5972092 0.0002 31_[+2]_41 chrV:1943649-1943729 0.00022 35_[+2]_37 chrII:1341593-1341673 0.00022 60_[+2]_12 chrIII:3811552-3811632 0.00026 46_[+2]_26 chrV:9165472-9165552 0.00026 44_[+2]_28 chrIV:12584298-12584378 0.00026 17_[+2]_55 chrX:4899862-4899942 0.00026 41_[+2]_31 chrIV:17427113-17427193 0.00026 45_[+2]_27 chrV:3344143-3344223 0.00026 37_[+2]_35 chrX:15627920-15628000 0.00026 28_[+2]_44 chrX:14357000-14357080 0.00026 16_[+2]_56 chrX:10068583-10068663 0.00028 60_[+2]_12 chrIV:10979824-10979904 0.00028 [+2]_72 chrI:8049571-8049651 0.00028 12_[+2]_60 chrV:7822801-7822881 0.00033 4_[+2]_68 chrV:12211288-12211368 0.00033 69_[+2]_3 chrX:1961071-1961151 0.00033 22_[+2]_50 chrIII:7723143-7723223 0.00033 35_[+2]_37 chrI:9845507-9845587 0.00033 29_[+2]_43 chrX:11482788-11482868 0.00033 43_[+2]_29 chrI:999244-999324 0.00033 70_[+2]_2 chrIII:3978567-3978647 0.00043 5_[+2]_67 chrIII:10151902-10151982 0.00043 42_[+2]_30 chrX:6826026-6826106 0.00043 9_[+2]_63 chrV:14143784-14143864 0.00043 72_[+2] chrIII:13127320-13127400 0.00049 27_[+2]_45 chrV:12518887-12518967 0.00049 9_[+2]_63 chrI:1100735-1100815 0.00049 26_[+2]_46 chrV:2056041-2056121 0.00049 44_[+2]_28 chrIV:5915340-5915420 0.00058 8_[+2]_64 chrI:5294567-5294647 0.00058 22_[+2]_50 chrV:9633495-9633575 0.00058 66_[+2]_6 chrII:1736531-1736611 0.00063 11_[+2]_61 chrIII:4967388-4967468 0.00063 54_[+2]_18 chrIV:763835-763915 0.00063 43_[+2]_29 chrV:6341174-6341254 0.00069 8_[+2]_64 chrI:10145315-10145395 0.00073 72_[+2] chrIV:11788680-11788760 0.00073 55_[+2]_17 chrV:9225780-9225860 0.0008 59_[+2]_13 chrV:1418011-1418091 0.00083 43_[+2]_29 chrIII:9698784-9698864 0.00089 31_[+2]_41 chrIII:8782229-8782309 0.00092 6_[+2]_66 chrX:12204468-12204548 0.001 6_[+2]_66 chrV:6033673-6033753 0.001 20_[+2]_52 chrII:4889006-4889086 0.0011 22_[+2]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTCTY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTYTCTY width=8 seqs=98 chrII:4184158-4184238 ( 3) TTTCTCTC 1 chrIII:2656323-2656403 ( 63) TTTCTCTC 1 chrIV:10971997-10972077 ( 16) TTTCTCTC 1 chrI:14181247-14181327 ( 68) TTTCTCTC 1 chrI:4333942-4334022 ( 23) TTTCTCTC 1 chrX:6320931-6321011 ( 48) TTTCTCTC 1 chrX:9798686-9798766 ( 59) TTTCTCTC 1 chrIV:6834863-6834943 ( 21) TTTCTCTC 1 chrIV:6836925-6837005 ( 62) TTTCTCTC 1 chrX:16525752-16525832 ( 15) TTTCTCTC 1 chrV:979853-979933 ( 22) TTTCTCTC 1 chrIII:4019068-4019148 ( 39) TTTCTCTC 1 chrV:1940632-1940712 ( 26) TTTCTCTC 1 chrV:1349959-1350039 ( 71) TTTCTCTC 1 chrV:348141-348221 ( 6) TTTCTCTC 1 chrI:6402669-6402749 ( 28) TTTCTCTC 1 chrV:11140494-11140574 ( 7) TTTTTCTC 1 chrIII:4323312-4323392 ( 50) TTTTTCTC 1 chrV:14322966-14323046 ( 41) TTTTTCTC 1 chrX:15634118-15634198 ( 40) TTTTTCTC 1 chrIII:2170741-2170821 ( 36) TTTTTCTC 1 chrII:10800312-10800392 ( 56) TTTTTCTC 1 chrIII:13271066-13271146 ( 68) TTTTTCTC 1 chrIV:6061115-6061195 ( 64) TTTTTCTC 1 chrV:3410281-3410361 ( 39) TTTTTCTC 1 chrV:1935625-1935705 ( 62) TTTTTCTC 1 chrIV:6622288-6622368 ( 71) TTTTTCTC 1 chrIII:3161766-3161846 ( 17) TTTCTCTT 1 chrX:7129620-7129700 ( 46) TTTCTCTT 1 chrV:7437728-7437808 ( 61) TTTCTCTT 1 chrIII:11681661-11681741 ( 20) TTTCTCTT 1 chrV:2281679-2281759 ( 64) TTTCTCTT 1 chrV:1367910-1367990 ( 1) TTTCTCTT 1 chrII:4767779-4767859 ( 39) TTTTTCTT 1 chrI:3675887-3675967 ( 37) TTTTTCTT 1 chrI:13065835-13065915 ( 47) TTTTTCTT 1 chrV:2244891-2244971 ( 37) TTTTTCTT 1 chrII:5272068-5272148 ( 15) TTTTTCTT 1 chrIII:10816175-10816255 ( 11) TTTTTCTT 1 chrII:10759131-10759211 ( 45) TTTTTCTT 1 chrIV:9092182-9092262 ( 21) TTTTTCTT 1 chrX:11474184-11474264 ( 20) TTTTTCTT 1 chrV:12158546-12158626 ( 2) TTCCTCTC 1 chrV:11677607-11677687 ( 66) CTTCTCTC 1 chrII:8962395-8962475 ( 6) CTTCTCTC 1 chrX:6240437-6240517 ( 62) TTCTTCTC 1 chrX:5659808-5659888 ( 49) TTCTTCTC 1 chrV:534359-534439 ( 54) TTCTTCTC 1 chrIV:6956844-6956924 ( 31) TTCTTCTC 1 chrX:5820218-5820298 ( 25) TCTCTCTC 1 chrX:10194643-10194723 ( 26) TCTCTCTC 1 chrIV:2664565-2664645 ( 69) TCTCTCTC 1 chrI:7993411-7993491 ( 9) CTTTTCTC 1 chrI:5972012-5972092 ( 32) CTTTTCTC 1 chrV:1943649-1943729 ( 36) TTCCTCTT 1 chrII:1341593-1341673 ( 61) TTCCTCTT 1 chrIII:3811552-3811632 ( 47) CTTCTCTT 1 chrV:9165472-9165552 ( 45) CTTCTCTT 1 chrIV:12584298-12584378 ( 18) CTTCTCTT 1 chrX:4899862-4899942 ( 42) CTTCTCTT 1 chrIV:17427113-17427193 ( 46) TCTTTCTC 1 chrV:3344143-3344223 ( 38) CTTCTCTT 1 chrX:15627920-15628000 ( 29) TCTTTCTC 1 chrX:14357000-14357080 ( 17) CTTCTCTT 1 chrX:10068583-10068663 ( 61) TTCTTCTT 1 chrIV:10979824-10979904 ( 1) TTCTTCTT 1 chrI:8049571-8049651 ( 13) TTCTTCTT 1 chrV:7822801-7822881 ( 5) TCTCTCTT 1 chrV:12211288-12211368 ( 70) TCTCTCTT 1 chrX:1961071-1961151 ( 23) TCTCTCTT 1 chrIII:7723143-7723223 ( 36) CTTTTCTT 1 chrI:9845507-9845587 ( 30) CTTTTCTT 1 chrX:11482788-11482868 ( 44) TCTCTCTT 1 chrI:999244-999324 ( 71) CTTTTCTT 1 chrIII:3978567-3978647 ( 6) TTTTTTTC 1 chrIII:10151902-10151982 ( 43) CTCCTCTC 1 chrX:6826026-6826106 ( 10) TTTTTTTC 1 chrV:14143784-14143864 ( 73) TTTTTTTC 1 chrIII:13127320-13127400 ( 28) CTCTTCTC 1 chrV:12518887-12518967 ( 10) TTTCTTTT 1 chrI:1100735-1100815 ( 27) TCCCTCTC 1 chrV:2056041-2056121 ( 45) TTTCTTTT 1 chrIV:5915340-5915420 ( 9) TCCTTCTC 1 chrI:5294567-5294647 ( 23) TTTTTTTT 1 chrV:9633495-9633575 ( 67) TCCTTCTC 1 chrII:1736531-1736611 ( 12) TCCCTCTT 1 chrIII:4967388-4967468 ( 55) CTCTTCTT 1 chrIV:763835-763915 ( 44) CTCTTCTT 1 chrV:6341174-6341254 ( 9) TTCCTTTC 1 chrI:10145315-10145395 ( 73) CCTTTCTT 1 chrIV:11788680-11788760 ( 56) CTTCTTTC 1 chrV:9225780-9225860 ( 60) CTTTTTTC 1 chrV:1418011-1418091 ( 44) TTCCTTTT 1 chrIII:9698784-9698864 ( 32) TCTTTTTC 1 chrIII:8782229-8782309 ( 7) TTCTTTTT 1 chrX:12204468-12204548 ( 7) TCTTTTTT 1 chrV:6033673-6033753 ( 21) TCTTTTTT 1 chrII:4889006-4889086 ( 23) TTGCTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTCTY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.13512 E= 1.8e-036 -1326 -17 -1326 150 -1326 -40 -1326 156 -1326 -10 -442 147 -1326 112 -1326 83 -1326 -1326 -1326 183 -1326 190 -1326 -97 -1326 -1326 -1326 183 -1326 126 -1326 68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTCTY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 98 E= 1.8e-036 0.000000 0.204082 0.000000 0.795918 0.000000 0.173469 0.000000 0.826531 0.000000 0.214286 0.010204 0.775510 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.551020 0.000000 0.448980 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTCTY MEME-2 regular expression -------------------------------------------------------------------------------- [TC]T[TC][CT]TCT[CT] -------------------------------------------------------------------------------- Time 10.12 secs. ******************************************************************************** ******************************************************************************** MOTIF CTKCGTCT MEME-3 width = 8 sites = 27 llr = 246 E-value = 1.2e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTKCGTCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C a::a:1a: probability G ::6:6::: matrix T :a4:39:a bits 2.2 * * * 2.0 * * * 1.8 ** * ** 1.5 ** * ** Relative 1.3 ** * *** Entropy 1.1 **** *** (13.2 bits) 0.9 **** *** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKCGTCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:1736531-1736611 54 1.27e-05 TCTCCGCCGT CTGCGTCT CTATGACTGA chrI:4030670-4030750 45 1.27e-05 ATCGTGCTAT CTGCGTCT CTCCATCTCA chrI:13065835-13065915 31 1.27e-05 TGTCATAAAT CTGCGTCT CCAGCCGATT chrV:7819722-7819802 40 1.27e-05 CCCCGCCTAT CTGCGTCT CTGCTTTTTC chrI:14181247-14181327 44 1.27e-05 CGACACGTGC CTGCGTCT TGTCGATTTA chrV:534359-534439 6 1.27e-05 GCCAC CTGCGTCT TTCCTTTCTC chrIV:2664565-2664645 48 1.27e-05 GTCTAACTGC CTGCGtct ctctatccct chrIV:6956844-6956924 1 1.27e-05 . CTGCGTCT CATTATTCTC chrII:2962701-2962781 24 1.27e-05 TCTAGGCCGT CTGCGTCT CCGGTGTCGT chrV:2056041-2056121 21 1.27e-05 CTCCTTCTAT CTGCGTCT CTCTGTCCTT chrV:966328-966408 2 1.27e-05 T CTGCGTCT CTATAGCCAC chrIII:2656323-2656403 39 2.90e-05 CGCTTTGTCT CTTCGTCT CCGTGTACTA chrV:3344143-3344223 68 2.90e-05 ATGGATCAAA CTTCGTCT AGTCT chrX:11475823-11475903 58 2.90e-05 GAGTAAACTT CTTCGTCT TGGGTGGCTT chrX:4899862-4899942 53 4.53e-05 TTCTCTTACT CTGCTTCT CCCGAGTCTT chrI:4496709-4496789 48 4.53e-05 GGATGTGCTT CTGCTTCT GCTACTACTg chrV:2244891-2244971 3 4.53e-05 GC CTGCTTCT CTTATCTCTC chrI:10145315-10145395 21 8.21e-05 TCTTGGAACT CTTCTTCT ATTTTTCAGT chrIII:2170741-2170821 24 8.21e-05 TATCCCTTTT CTTCTTCT TCATTTTTTC chrV:1349959-1350039 49 8.21e-05 TTCActcaat cttcttct tttcctctca chrX:11477871-11477951 10 9.25e-05 ACCATATCT CTGCGCCT CCCAATCGCA chrV:7822801-7822881 33 1.13e-04 TGGTATCTGT CTTCATCT ACTTCATTCA chrI:3675887-3675967 47 1.13e-04 TTTTTCTTTT CTTCATCT CGTCGAAAAT chrI:7993411-7993491 41 1.13e-04 CACTGCGTAT CTTCATCT TTGAATACTA chrI:8049571-8049651 1 1.13e-04 . CTTCATCT CTGTTTCTTC chrIV:15017113-15017193 49 1.26e-04 CCCGGGCGGA CTTCGCCT TCTTCCTCAA chrV:11506465-11506545 4 1.40e-04 CAT CTGCTCCT CATTTCCTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKCGTCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:1736531-1736611 1.3e-05 53_[+3]_19 chrI:4030670-4030750 1.3e-05 44_[+3]_28 chrI:13065835-13065915 1.3e-05 30_[+3]_42 chrV:7819722-7819802 1.3e-05 39_[+3]_33 chrI:14181247-14181327 1.3e-05 43_[+3]_29 chrV:534359-534439 1.3e-05 5_[+3]_67 chrIV:2664565-2664645 1.3e-05 47_[+3]_25 chrIV:6956844-6956924 1.3e-05 [+3]_72 chrII:2962701-2962781 1.3e-05 23_[+3]_49 chrV:2056041-2056121 1.3e-05 20_[+3]_52 chrV:966328-966408 1.3e-05 1_[+3]_71 chrIII:2656323-2656403 2.9e-05 38_[+3]_34 chrV:3344143-3344223 2.9e-05 67_[+3]_5 chrX:11475823-11475903 2.9e-05 57_[+3]_15 chrX:4899862-4899942 4.5e-05 52_[+3]_20 chrI:4496709-4496789 4.5e-05 47_[+3]_25 chrV:2244891-2244971 4.5e-05 2_[+3]_70 chrI:10145315-10145395 8.2e-05 20_[+3]_52 chrIII:2170741-2170821 8.2e-05 23_[+3]_49 chrV:1349959-1350039 8.2e-05 48_[+3]_24 chrX:11477871-11477951 9.3e-05 9_[+3]_63 chrV:7822801-7822881 0.00011 32_[+3]_40 chrI:3675887-3675967 0.00011 46_[+3]_26 chrI:7993411-7993491 0.00011 40_[+3]_32 chrI:8049571-8049651 0.00011 [+3]_72 chrIV:15017113-15017193 0.00013 48_[+3]_24 chrV:11506465-11506545 0.00014 3_[+3]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKCGTCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTKCGTCT width=8 seqs=27 chrII:1736531-1736611 ( 54) CTGCGTCT 1 chrI:4030670-4030750 ( 45) CTGCGTCT 1 chrI:13065835-13065915 ( 31) CTGCGTCT 1 chrV:7819722-7819802 ( 40) CTGCGTCT 1 chrI:14181247-14181327 ( 44) CTGCGTCT 1 chrV:534359-534439 ( 6) CTGCGTCT 1 chrIV:2664565-2664645 ( 48) CTGCGTCT 1 chrIV:6956844-6956924 ( 1) CTGCGTCT 1 chrII:2962701-2962781 ( 24) CTGCGTCT 1 chrV:2056041-2056121 ( 21) CTGCGTCT 1 chrV:966328-966408 ( 2) CTGCGTCT 1 chrIII:2656323-2656403 ( 39) CTTCGTCT 1 chrV:3344143-3344223 ( 68) CTTCGTCT 1 chrX:11475823-11475903 ( 58) CTTCGTCT 1 chrX:4899862-4899942 ( 53) CTGCTTCT 1 chrI:4496709-4496789 ( 48) CTGCTTCT 1 chrV:2244891-2244971 ( 3) CTGCTTCT 1 chrI:10145315-10145395 ( 21) CTTCTTCT 1 chrIII:2170741-2170821 ( 24) CTTCTTCT 1 chrV:1349959-1350039 ( 49) CTTCTTCT 1 chrX:11477871-11477951 ( 10) CTGCGCCT 1 chrV:7822801-7822881 ( 33) CTTCATCT 1 chrI:3675887-3675967 ( 47) CTTCATCT 1 chrI:7993411-7993491 ( 41) CTTCATCT 1 chrI:8049571-8049651 ( 1) CTTCATCT 1 chrIV:15017113-15017193 ( 49) CTTCGCCT 1 chrV:11506465-11506545 ( 4) CTGCTCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKCGTCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.594 E= 1.2e-005 -1140 212 -1140 -1140 -1140 -1140 -1140 183 -1140 -1140 144 54 -1140 212 -1140 -1140 -87 -1140 144 -11 -1140 -105 -1140 166 -1140 212 -1140 -1140 -1140 -1140 -1140 183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKCGTCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.2e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.592593 0.407407 0.000000 1.000000 0.000000 0.000000 0.148148 0.000000 0.592593 0.259259 0.000000 0.111111 0.000000 0.888889 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKCGTCT MEME-3 regular expression -------------------------------------------------------------------------------- CT[GT]C[GT]TCT -------------------------------------------------------------------------------- Time 13.57 secs. ******************************************************************************** ******************************************************************************** MOTIF GRRGGKGG MEME-4 width = 8 sites = 32 llr = 275 E-value = 1.9e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRRGGKGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :53::1:: pos.-specific C ::2::1:: probability G a45aa4aa matrix T :1:::4:: bits 2.2 * ** ** 2.0 * ** ** 1.8 * ** ** 1.5 * ** ** Relative 1.3 * ** ** Entropy 1.1 * ** ** (12.4 bits) 0.9 * ** ** 0.7 ***** ** 0.4 ***** ** 0.2 ******** 0.0 -------- Multilevel GAGGGGGG consensus GA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRGGKGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:1766111-1766191 27 6.36e-06 TCGAGTTAAG GAGGGGGG GCCCGGACGA chrV:2135521-2135601 17 6.36e-06 TGTGTGGGGG GAGGGGGG TGGCTGACGA chrX:3414927-3415007 43 1.15e-05 AAAATGGGGG GGGGGGGG ACGGTCAGAT chrV:348141-348221 43 1.15e-05 gggggggggg gggggggg gaggCACGCG chrV:19352128-19352208 11 1.96e-05 GCGGCTAGGT GAGGGTGG AATGAGTAAC chrV:4523961-4524041 5 1.96e-05 TAGA GAGGGTGG TAGTGGCACC chrX:14287992-14288072 47 1.96e-05 TTTGTGGGAA GAGGGTGG TGGTGGTGAA chrII:8962395-8962475 21 1.96e-05 CTCATAAAGT GAGGGTGG TGAGGTGATA chrV:11074581-11074661 18 2.62e-05 TGTGAATCGA GGGGGTGG ATGGAGTGGG chrIV:6834863-6834943 63 2.62e-05 GAGAGCAAGT GGGGGTGG ATACATACAC chrIV:11350941-11351021 43 2.62e-05 AGAAGTAGGT GGGGGTGG CACCCAATGG chrV:1486182-1486262 26 3.41e-05 GAATGACGTT GAAGGGGG GACGGTAATC chrX:9774422-9774502 33 3.41e-05 TCGAAAAAAA GAAGGGGG AGACATTGTT chrIV:7426199-7426279 48 3.41e-05 GTGCTGTTCA GAAGGGGG ACCTCGTCag chrI:5294567-5294647 58 4.05e-05 CGGGACGAGC GGAGGGGG CAGGGCGTCT chrII:7714931-7715011 64 5.74e-05 AATGAGATTT GACGGGGG AAACGGGAA chrI:14631128-14631208 8 5.74e-05 AACATCA GACGGGGG TGTGGCAGAT chrIII:11681661-11681741 57 5.74e-05 tcatcatcTT GAAGGTGG TTCTTGTGCC chrI:10280726-10280806 26 5.74e-05 GACTCGAACA GAAGGTGG AAGGGCAACA chrV:11309112-11309192 54 7.77e-05 AGGGGGAGCA GAGGGCGG CGCGGGAGCA chrI:4050668-4050748 3 7.77e-05 GT GGAGGTGG ATGCCGTCCC chrV:2134510-2134590 54 7.77e-05 AGCAATTAGA GGCGGGGG TCGGAACCAG chrIV:10402444-10402524 61 9.96e-05 AAAAGAATGT GAGGGAGG ATCTGATTAA chrII:4184158-4184238 54 1.19e-04 ATCCCGCCCG GGGGGAGG CTGTACTACA chrV:9165472-9165552 6 1.28e-04 ACAGG GTGGGTGG CAGGCAACAT chrV:8802398-8802478 21 1.28e-04 AGATGGCGGT GTGGGTGG GAGAGCACAA chrV:1349959-1350039 14 1.43e-04 TATCAACACA GGAGGCGG ACGGACATTC chrX:16991573-16991653 5 1.76e-04 GATA GTAGGGGG CAACATTAAT chrV:1771904-1771984 71 1.82e-04 GGCGGTCTCC GGCGGCGG GA chrX:13638539-13638619 59 1.82e-04 ACGTAATCGG GGCGGCGG ACGGCCATGC chrIII:5827161-5827241 34 1.90e-04 CCATTTCTTT GACGGAGG GGTCCGTCTA chrV:12158546-12158626 57 2.38e-04 ACGTGGATGT GTGGGAGG CGAGAAGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRGGKGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1766111-1766191 6.4e-06 26_[+4]_46 chrV:2135521-2135601 6.4e-06 16_[+4]_56 chrX:3414927-3415007 1.1e-05 42_[+4]_30 chrV:348141-348221 1.1e-05 42_[+4]_30 chrV:19352128-19352208 2e-05 10_[+4]_62 chrV:4523961-4524041 2e-05 4_[+4]_68 chrX:14287992-14288072 2e-05 46_[+4]_26 chrII:8962395-8962475 2e-05 20_[+4]_52 chrV:11074581-11074661 2.6e-05 17_[+4]_55 chrIV:6834863-6834943 2.6e-05 62_[+4]_10 chrIV:11350941-11351021 2.6e-05 42_[+4]_30 chrV:1486182-1486262 3.4e-05 25_[+4]_47 chrX:9774422-9774502 3.4e-05 32_[+4]_40 chrIV:7426199-7426279 3.4e-05 47_[+4]_25 chrI:5294567-5294647 4e-05 57_[+4]_15 chrII:7714931-7715011 5.7e-05 63_[+4]_9 chrI:14631128-14631208 5.7e-05 7_[+4]_65 chrIII:11681661-11681741 5.7e-05 56_[+4]_16 chrI:10280726-10280806 5.7e-05 25_[+4]_47 chrV:11309112-11309192 7.8e-05 53_[+4]_19 chrI:4050668-4050748 7.8e-05 2_[+4]_70 chrV:2134510-2134590 7.8e-05 53_[+4]_19 chrIV:10402444-10402524 0.0001 60_[+4]_12 chrII:4184158-4184238 0.00012 53_[+4]_19 chrV:9165472-9165552 0.00013 5_[+4]_67 chrV:8802398-8802478 0.00013 20_[+4]_52 chrV:1349959-1350039 0.00014 13_[+4]_59 chrX:16991573-16991653 0.00018 4_[+4]_68 chrV:1771904-1771984 0.00018 70_[+4]_2 chrX:13638539-13638619 0.00018 58_[+4]_14 chrIII:5827161-5827241 0.00019 33_[+4]_39 chrV:12158546-12158626 0.00024 56_[+4]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRGGKGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRRGGKGG width=8 seqs=32 chrIV:1766111-1766191 ( 27) GAGGGGGG 1 chrV:2135521-2135601 ( 17) GAGGGGGG 1 chrX:3414927-3415007 ( 43) GGGGGGGG 1 chrV:348141-348221 ( 43) GGGGGGGG 1 chrV:19352128-19352208 ( 11) GAGGGTGG 1 chrV:4523961-4524041 ( 5) GAGGGTGG 1 chrX:14287992-14288072 ( 47) GAGGGTGG 1 chrII:8962395-8962475 ( 21) GAGGGTGG 1 chrV:11074581-11074661 ( 18) GGGGGTGG 1 chrIV:6834863-6834943 ( 63) GGGGGTGG 1 chrIV:11350941-11351021 ( 43) GGGGGTGG 1 chrV:1486182-1486262 ( 26) GAAGGGGG 1 chrX:9774422-9774502 ( 33) GAAGGGGG 1 chrIV:7426199-7426279 ( 48) GAAGGGGG 1 chrI:5294567-5294647 ( 58) GGAGGGGG 1 chrII:7714931-7715011 ( 64) GACGGGGG 1 chrI:14631128-14631208 ( 8) GACGGGGG 1 chrIII:11681661-11681741 ( 57) GAAGGTGG 1 chrI:10280726-10280806 ( 26) GAAGGTGG 1 chrV:11309112-11309192 ( 54) GAGGGCGG 1 chrI:4050668-4050748 ( 3) GGAGGTGG 1 chrV:2134510-2134590 ( 54) GGCGGGGG 1 chrIV:10402444-10402524 ( 61) GAGGGAGG 1 chrII:4184158-4184238 ( 54) GGGGGAGG 1 chrV:9165472-9165552 ( 6) GTGGGTGG 1 chrV:8802398-8802478 ( 21) GTGGGTGG 1 chrV:1349959-1350039 ( 14) GGAGGCGG 1 chrX:16991573-16991653 ( 5) GTAGGGGG 1 chrV:1771904-1771984 ( 71) GGCGGCGG 1 chrX:13638539-13638619 ( 59) GGCGGCGG 1 chrIII:5827161-5827241 ( 34) GACGGAGG 1 chrV:12158546-12158626 ( 57) GTGGGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRGGKGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.155 E= 1.9e-004 -1164 -1164 219 -1164 88 -1164 78 -117 5 -29 128 -1164 -1164 -1164 219 -1164 -1164 -1164 219 -1164 -112 -88 78 42 -1164 -1164 219 -1164 -1164 -1164 219 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRGGKGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.9e-004 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.375000 0.125000 0.281250 0.187500 0.531250 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.125000 0.375000 0.375000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRGGKGG MEME-4 regular expression -------------------------------------------------------------------------------- G[AG][GA]GG[GT]GG -------------------------------------------------------------------------------- Time 16.90 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-5 width = 8 sites = 33 llr = 270 E-value = 7.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :7:818:9 pos.-specific C a29182a: probability G ::1::::1 matrix T :::11::: bits 2.2 * 2.0 * * 1.8 * * * 1.5 * * ** Relative 1.3 * * **** Entropy 1.1 * * **** (11.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13846184-13846264 26 1.53e-05 CGTCCGATTA CACACACA GAATCACAAA chrII:6709138-6709218 7 1.53e-05 TTCTCT CACACACA TCTTTGGCTC chrV:1155016-1155096 64 1.53e-05 CCAGAACACG CACACACA CTGACCCCT chrII:15194038-15194118 23 1.53e-05 GAGAGAGCAG CACACACA AATCGATCAG chrV:1887160-1887240 6 1.53e-05 ACACA CACACACA TCATCTCACC chrV:1341818-1341898 27 1.53e-05 TGCCAAGATA CACACACA GACACAGCAG chrI:433670-433750 69 1.53e-05 TTTGAacaca cacacaca caca chrX:3957777-3957857 72 1.53e-05 CATCcacaca cacacaca c chrI:10498050-10498130 13 1.53e-05 CCACCATTGG CACACACA CTCACACAAA chrV:6033673-6033753 49 1.53e-05 Gacacacaca cacacaca GATTTGGTCA chrII:9757754-9757834 5 2.83e-05 CCCA CCCACACA TGTGACAATA chrX:16263453-16263533 41 4.12e-05 ATGACCTTGC CACACCCA AACGCAATCG chrX:5820218-5820298 37 4.12e-05 TCTCTCACCC CACACCCA GCAAAAAACT chrV:3344143-3344223 8 7.23e-05 CGCCGGT CACAAACA TTTTTGAACC chrII:2734888-2734968 20 7.23e-05 ACCAACCCCC CACAAACA AAAAATGAAG chrX:6251049-6251129 35 7.23e-05 AGCCCACCCT CACAAACA CAGGAAGTTG chrI:8278099-8278179 43 8.81e-05 TTGTTCTCAT CACTCACA AAACAATTGC chrI:7392236-7392316 71 8.81e-05 TGCTTCAaca cactcaca ga chrI:3675887-3675967 27 9.90e-05 CTCTTTCATC CCCACCCA ACTTTTTCTT chrIV:12012620-12012700 53 9.90e-05 GCGATCTCCC CCCACCCA ACCAACGGAA chrV:1890161-1890241 66 1.11e-04 TGAAACACAG CACACACG GAGACAG chrI:14899441-14899521 54 1.11e-04 CGCTCAACGA CACACACG GAAAACAGTG chrX:15564510-15564590 55 1.37e-04 CAAAAAGAAA CAGACACA TGAGGTCTTC chrIII:10151902-10151982 54 1.37e-04 TCCTCTCCAT CCCCCACA GCAACACACC chrIV:6836925-6837005 43 1.37e-04 TTGTGATCCG CCCCCACA AACCCATTCA chrI:9053456-9053536 56 1.55e-04 ACCACACATT CACATACA ATTTGTGCAT chrIII:8782229-8782309 40 1.95e-04 AGTGCATCCG CCCTCACA GACATCTCGC chrI:4030670-4030750 4 2.11e-04 TTT CTCACACA ACTTTACACA chrIII:5827161-5827241 2 2.41e-04 A CACACAGA TGACTTCGTT chrII:4767779-4767859 15 2.77e-04 AAGGATAAGA CCGACACA TCTTCTCATT chrIII:10816175-10816255 45 3.08e-04 CTATCTCTCT CACCAACA AAAACAAGTC chrV:1480970-1481050 12 3.40e-04 ATCCGTCCCC CCCCCCCA TTGAGTTTTA chrV:1327465-1327545 55 3.55e-04 AGAATGAGGA CACATCCA TTTAACACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13846184-13846264 1.5e-05 25_[+5]_47 chrII:6709138-6709218 1.5e-05 6_[+5]_66 chrV:1155016-1155096 1.5e-05 63_[+5]_9 chrII:15194038-15194118 1.5e-05 22_[+5]_50 chrV:1887160-1887240 1.5e-05 5_[+5]_67 chrV:1341818-1341898 1.5e-05 26_[+5]_46 chrI:433670-433750 1.5e-05 68_[+5]_4 chrX:3957777-3957857 1.5e-05 71_[+5]_1 chrI:10498050-10498130 1.5e-05 12_[+5]_60 chrV:6033673-6033753 1.5e-05 48_[+5]_24 chrII:9757754-9757834 2.8e-05 4_[+5]_68 chrX:16263453-16263533 4.1e-05 40_[+5]_32 chrX:5820218-5820298 4.1e-05 36_[+5]_36 chrV:3344143-3344223 7.2e-05 7_[+5]_65 chrII:2734888-2734968 7.2e-05 19_[+5]_53 chrX:6251049-6251129 7.2e-05 34_[+5]_38 chrI:8278099-8278179 8.8e-05 42_[+5]_30 chrI:7392236-7392316 8.8e-05 70_[+5]_2 chrI:3675887-3675967 9.9e-05 26_[+5]_46 chrIV:12012620-12012700 9.9e-05 52_[+5]_20 chrV:1890161-1890241 0.00011 65_[+5]_7 chrI:14899441-14899521 0.00011 53_[+5]_19 chrX:15564510-15564590 0.00014 54_[+5]_18 chrIII:10151902-10151982 0.00014 53_[+5]_19 chrIV:6836925-6837005 0.00014 42_[+5]_30 chrI:9053456-9053536 0.00016 55_[+5]_17 chrIII:8782229-8782309 0.0002 39_[+5]_33 chrI:4030670-4030750 0.00021 3_[+5]_69 chrIII:5827161-5827241 0.00024 1_[+5]_71 chrII:4767779-4767859 0.00028 14_[+5]_58 chrIII:10816175-10816255 0.00031 44_[+5]_28 chrV:1480970-1481050 0.00034 11_[+5]_61 chrV:1327465-1327545 0.00036 54_[+5]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=33 chrX:13846184-13846264 ( 26) CACACACA 1 chrII:6709138-6709218 ( 7) CACACACA 1 chrV:1155016-1155096 ( 64) CACACACA 1 chrII:15194038-15194118 ( 23) CACACACA 1 chrV:1887160-1887240 ( 6) CACACACA 1 chrV:1341818-1341898 ( 27) CACACACA 1 chrI:433670-433750 ( 69) CACACACA 1 chrX:3957777-3957857 ( 72) CACACACA 1 chrI:10498050-10498130 ( 13) CACACACA 1 chrV:6033673-6033753 ( 49) CACACACA 1 chrII:9757754-9757834 ( 5) CCCACACA 1 chrX:16263453-16263533 ( 41) CACACCCA 1 chrX:5820218-5820298 ( 37) CACACCCA 1 chrV:3344143-3344223 ( 8) CACAAACA 1 chrII:2734888-2734968 ( 20) CACAAACA 1 chrX:6251049-6251129 ( 35) CACAAACA 1 chrI:8278099-8278179 ( 43) CACTCACA 1 chrI:7392236-7392316 ( 71) CACTCACA 1 chrI:3675887-3675967 ( 27) CCCACCCA 1 chrIV:12012620-12012700 ( 53) CCCACCCA 1 chrV:1890161-1890241 ( 66) CACACACG 1 chrI:14899441-14899521 ( 54) CACACACG 1 chrX:15564510-15564590 ( 55) CAGACACA 1 chrIII:10151902-10151982 ( 54) CCCCCACA 1 chrIV:6836925-6837005 ( 43) CCCCCACA 1 chrI:9053456-9053536 ( 56) CACATACA 1 chrIII:8782229-8782309 ( 40) CCCTCACA 1 chrI:4030670-4030750 ( 4) CTCACACA 1 chrIII:5827161-5827241 ( 2) CACACAGA 1 chrII:4767779-4767859 ( 15) CCGACACA 1 chrIII:10816175-10816255 ( 45) CACCAACA 1 chrV:1480970-1481050 ( 12) CCCCCCCA 1 chrV:1327465-1327545 ( 55) CACATCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.87609 E= 7.6e+001 -1169 212 -1169 -1169 142 8 -1169 -321 -1169 203 -185 -1169 154 -92 -1169 -162 -116 183 -1169 -221 159 -34 -1169 -1169 -1169 208 -285 -1169 179 -1169 -185 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 7.6e+001 0.000000 1.000000 0.000000 0.000000 0.727273 0.242424 0.000000 0.030303 0.000000 0.939394 0.060606 0.000000 0.787879 0.121212 0.000000 0.090909 0.121212 0.818182 0.000000 0.060606 0.818182 0.181818 0.000000 0.000000 0.000000 0.969697 0.030303 0.000000 0.939394 0.000000 0.060606 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 regular expression -------------------------------------------------------------------------------- C[AC]CACACA -------------------------------------------------------------------------------- Time 20.20 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6402669-6402749 2.84e-02 27_[+2(2.09e-05)]_45 chrV:1243170-1243250 6.05e-01 80 chrI:7948279-7948359 6.91e-02 80 chrIV:11350941-11351021 1.68e-02 42_[+4(2.62e-05)]_30 chrV:348141-348221 6.15e-04 5_[+2(2.09e-05)]_17_[+4(1.15e-05)]_\ [+4(1.15e-05)]_34 chrV:966328-966408 5.65e-03 1_[+3(1.27e-05)]_71 chrV:6033673-6033753 2.03e-02 40_[+5(1.53e-05)]_[+5(1.53e-05)]_24 chrX:11476739-11476819 2.40e-01 80 chrX:11479604-11479684 9.50e-02 63_[+1(2.40e-05)]_9 chrV:1367910-1367990 4.40e-03 [+2(7.19e-05)]_43_[+1(8.17e-05)]_21 chrV:2135521-2135601 5.36e-03 16_[+4(6.36e-06)]_56 chrIII:9731469-9731549 5.48e-03 80 chrV:1480970-1481050 2.20e-01 80 chrI:14899441-14899521 1.01e-01 80 chrV:1327465-1327545 1.99e-02 28_[+1(8.17e-05)]_44 chrV:2134510-2134590 2.84e-02 53_[+4(7.77e-05)]_19 chrIV:7426199-7426279 3.92e-03 47_[+4(3.41e-05)]_17_[+1(4.33e-05)] chrX:11475823-11475903 4.02e-03 57_[+3(2.90e-05)]_15 chrX:1265508-1265588 5.57e-01 80 chrX:9774422-9774502 2.28e-03 24_[+1(2.40e-05)]_[+4(3.41e-05)]_40 chrV:1349959-1350039 1.54e-04 48_[+3(8.21e-05)]_14_[+2(2.09e-05)]_\ 2 chrV:1418011-1418091 1.05e-01 80 chrV:14800544-14800624 5.53e-01 80 chrI:6340168-6340248 3.87e-01 80 chrV:1940632-1940712 1.67e-02 25_[+2(2.09e-05)]_47 chrII:8962395-8962475 3.06e-04 20_[+4(1.96e-05)]_52 chrV:3312427-3312507 1.50e-02 33_[+1(4.33e-05)]_39 chrIV:15017113-15017193 9.96e-02 80 chrV:1364514-1364594 8.20e-02 80 chrX:8986601-8986681 5.55e-01 80 chrV:1229421-1229501 1.32e-01 80 chrIV:6622288-6622368 9.31e-02 70_[+2(4.64e-05)]_2 chrI:8049571-8049651 2.14e-02 80 chrV:2056041-2056121 1.81e-02 20_[+3(1.27e-05)]_52 chrIII:3437363-3437443 2.00e-01 80 chrII:6303376-6303456 2.03e-01 80 chrX:11474184-11474264 5.14e-02 80 chrIII:9698784-9698864 3.17e-01 80 chrIV:8067927-8068007 2.60e-01 80 chrI:3316671-3316751 6.01e-01 80 chrIV:12012620-12012700 1.15e-01 52_[+5(9.90e-05)]_20 chrX:3414927-3415007 2.86e-02 37_[+4(1.15e-05)]_35 chrX:15395879-15395959 6.87e-02 80 chrX:6251049-6251129 9.55e-02 34_[+5(7.23e-05)]_38 chrI:9053456-9053536 1.50e-02 80 chrX:14357000-14357080 2.82e-01 80 chrV:635812-635892 8.37e-01 80 chrV:1935625-1935705 1.72e-01 61_[+2(4.64e-05)]_11 chrIII:4019068-4019148 2.91e-02 38_[+2(2.09e-05)]_34 chrX:16991573-16991653 9.20e-02 80 chrII:9757754-9757834 1.83e-03 4_[+5(2.83e-05)]_68 chrV:4157454-4157534 5.94e-01 80 chrV:979853-979933 2.57e-02 21_[+2(2.09e-05)]_51 chrX:15627920-15628000 3.33e-02 80 chrX:2139100-2139180 7.27e-03 45_[+1(2.40e-05)]_27 chrI:4050668-4050748 3.54e-02 2_[+4(7.77e-05)]_70 chrIV:5137953-5138033 3.19e-02 21_[+1(8.17e-05)]_51 chrII:122164-122244 6.19e-02 49_[+1(4.33e-05)]_23 chrI:10498050-10498130 1.28e-04 12_[+5(1.53e-05)]_43_[+1(4.33e-05)]_\ 9 chrIV:9092182-9092262 1.34e-02 25_[+3(2.90e-05)]_47 chrV:11506465-11506545 7.18e-02 80 chrV:6341174-6341254 7.83e-02 80 chrV:1486182-1486262 3.48e-02 25_[+4(3.41e-05)]_47 chrIV:1766111-1766191 1.78e-03 26_[+4(6.36e-06)]_46 chrI:7392236-7392316 2.19e-01 70_[+5(8.81e-05)]_2 chrI:999244-999324 6.54e-03 33_[+1(8.17e-05)]_39 chrX:14287992-14288072 7.65e-03 46_[+4(1.96e-05)]_26 chrI:1100735-1100815 4.75e-02 80 chrX:11482788-11482868 9.70e-02 80 chrI:8278099-8278179 7.91e-05 42_[+5(8.81e-05)]_10_[+4(9.96e-05)]_\ 12 chrV:1285873-1285953 3.74e-01 80 chrX:11481843-11481923 4.01e-01 80 chrIV:763835-763915 5.66e-02 80 chrX:16525752-16525832 4.27e-03 14_[+2(2.09e-05)]_58 chrIV:4586145-4586225 2.69e-01 80 chrII:8589365-8589445 2.56e-01 80 chrIII:8287735-8287815 4.38e-01 80 chrII:1341593-1341673 8.13e-03 53_[+3(8.21e-05)]_19 chrV:12530253-12530333 1.29e-01 25_[+1(2.40e-05)]_47 chrI:5972012-5972092 1.19e-01 80 chrII:10759131-10759211 1.59e-02 80 chrV:11309112-11309192 2.27e-02 53_[+4(7.77e-05)]_19 chrI:9845507-9845587 4.42e-01 80 chrV:20873291-20873371 7.80e-03 55_[+5(1.53e-05)]_[+5(1.53e-05)]_\ [+5(1.53e-05)]_1 chrV:1627397-1627477 2.18e-01 80 chrIV:6836925-6837005 9.46e-05 13_[+1(2.40e-05)]_40_[+2(2.09e-05)]_\ 11 chrV:9765786-9765866 2.39e-01 80 chrX:11462187-11462267 9.90e-01 80 chrV:8407150-8407230 3.99e-01 80 chrI:5544024-5544104 1.33e-01 80 chrII:2962701-2962781 4.01e-02 23_[+3(1.27e-05)]_49 chrIV:6834863-6834943 1.17e-04 20_[+2(2.09e-05)]_34_[+4(2.62e-05)]_\ 10 chrI:10280726-10280806 3.89e-02 25_[+4(5.74e-05)]_47 chrV:2076166-2076246 3.00e-01 80 chrIV:11571456-11571536 8.63e-02 80 chrX:13638539-13638619 1.01e-01 80 chrV:3677367-3677447 4.71e-01 80 chrV:9633495-9633575 9.86e-03 80 chrV:13346041-13346121 5.27e-01 80 chrIV:10170988-10171068 1.01e-01 80 chrI:12675362-12675442 4.25e-01 80 chrIV:11710492-11710572 2.34e-01 80 chrII:2734888-2734968 4.78e-02 19_[+5(7.23e-05)]_53 chrII:9260171-9260251 8.35e-01 80 chrV:8802398-8802478 2.02e-02 80 chrX:9798686-9798766 5.26e-02 58_[+2(2.09e-05)]_14 chrII:4889006-4889086 2.94e-01 80 chrX:8481846-8481926 5.51e-02 42_[+1(8.17e-05)]_30 chrIV:79371-79451 6.21e-01 80 chrX:7076570-7076650 3.92e-01 80 chrV:13807416-13807496 1.01e-01 8_[+1(8.17e-05)]_26_[+1(8.17e-05)]_\ 5_[+1(4.33e-05)]_17 chrX:6320931-6321011 1.09e-03 15_[+1(2.40e-05)]_15_[+2(4.64e-05)]_\ 1_[+2(2.09e-05)]_25 chrIII:6655995-6656075 1.46e-01 52_[+1(8.17e-05)]_20 chrIII:10816175-10816255 1.87e-02 80 chrI:7993411-7993491 4.49e-02 80 chrII:5272068-5272148 4.39e-02 80 chrII:9281767-9281847 2.66e-01 80 chrV:1771904-1771984 9.29e-02 80 chrX:3957777-3957857 9.07e-02 65_[+5(1.53e-05)]_7 chrIV:12464977-12465057 1.11e-01 80 chrIII:8782229-8782309 4.39e-02 80 chrIII:7488418-7488498 3.21e-01 80 chrV:2244891-2244971 1.72e-02 2_[+3(4.53e-05)]_70 chrI:433670-433750 1.00e-02 64_[+5(1.53e-05)]_[+5(1.53e-05)] chrV:14143784-14143864 6.29e-03 44_[+1(8.17e-05)]_28 chrV:4523961-4524041 1.76e-02 4_[+4(1.96e-05)]_68 chrI:6965656-6965736 3.88e-01 80 chrV:3344143-3344223 2.20e-04 7_[+5(7.23e-05)]_52_[+3(2.90e-05)]_\ 5 chrI:6171655-6171735 7.42e-02 80 chrV:3410281-3410361 1.93e-02 38_[+2(4.64e-05)]_34 chrIV:6956844-6956924 7.84e-03 [+3(1.27e-05)]_15_[+3(8.21e-05)]_49 chrI:7331999-7332079 9.55e-02 80 chrV:1341818-1341898 4.38e-03 26_[+5(1.53e-05)]_46 chrI:4496709-4496789 3.37e-03 47_[+3(4.53e-05)]_25 chrII:5276868-5276948 1.76e-02 58_[+1(8.17e-05)]_14 chrIV:10402444-10402524 3.19e-02 60_[+4(9.96e-05)]_12 chrX:11477871-11477951 1.11e-01 9_[+3(9.25e-05)]_63 chrIV:6061115-6061195 7.99e-05 15_[+1(2.40e-05)]_40_[+2(4.64e-05)]_\ 9 chrX:5982975-5983055 1.73e-01 25_[+1(4.33e-05)]_47 chrIII:4967388-4967468 3.87e-02 56_[+3(8.21e-05)]_16 chrIV:2664565-2664645 6.55e-03 47_[+3(1.27e-05)]_25 chrIV:17427113-17427193 1.21e-02 52_[+3(6.11e-05)]_20 chrV:12518887-12518967 7.15e-02 80 chrX:2464219-2464299 4.51e-01 80 chrI:4333942-4334022 1.10e-01 22_[+2(2.09e-05)]_50 chrV:534359-534439 8.38e-03 5_[+3(1.27e-05)]_67 chrX:4877049-4877129 6.64e-01 80 chrX:13009066-13009146 9.86e-01 80 chrV:1943649-1943729 1.22e-01 80 chrI:14181247-14181327 3.81e-04 43_[+3(1.27e-05)]_16_[+2(2.09e-05)]_\ 5 chrV:2281679-2281759 1.84e-01 63_[+2(7.19e-05)]_9 chrIII:11681661-11681741 2.02e-03 19_[+2(7.19e-05)]_29_[+4(5.74e-05)]_\ 16 chrIV:5100282-5100362 1.50e-01 80 chrV:8663214-8663294 4.00e-02 64_[+1(2.40e-05)]_8 chrIV:10971997-10972077 1.67e-01 15_[+2(2.09e-05)]_57 chrII:6707672-6707752 4.50e-01 80 chrV:1887160-1887240 3.36e-02 1_[+5(1.53e-05)]_71 chrIII:7723143-7723223 1.03e-01 80 chrX:4899862-4899942 2.22e-02 52_[+3(4.53e-05)]_20 chrI:14631128-14631208 1.76e-01 7_[+4(5.74e-05)]_65 chrIV:10979824-10979904 7.41e-03 31_[+1(8.17e-05)]_41 chrV:7819722-7819802 1.74e-02 39_[+3(1.27e-05)]_33 chrX:1961071-1961151 5.49e-02 80 chrX:16484853-16484933 1.45e-02 80 chrV:12961285-12961365 3.62e-02 80 chrIII:13271066-13271146 7.37e-02 21_[+2(4.64e-05)]_29_[+2(4.64e-05)]_\ 1_[+2(4.64e-05)]_5 chrX:10194643-10194723 2.52e-02 80 chrV:10757234-10757314 5.51e-02 4_[+1(4.33e-05)]_68 chrX:6826026-6826106 5.47e-01 80 chrV:12211288-12211368 2.74e-01 80 chrX:14684559-14684639 1.89e-01 80 chrIII:9664687-9664767 6.51e-02 80 chrV:5961699-5961779 4.88e-02 80 chrIII:5827161-5827241 1.70e-03 80 chrII:10800312-10800392 1.98e-01 55_[+2(4.64e-05)]_17 chrX:9803750-9803830 2.95e-01 80 chrIV:11793332-11793412 4.07e-01 80 chrV:7437728-7437808 1.84e-03 60_[+2(7.19e-05)]_12 chrIV:12114704-12114784 4.48e-01 80 chrIV:11788680-11788760 2.14e-02 80 chrI:13065835-13065915 5.32e-03 30_[+3(1.27e-05)]_42 chrI:7342597-7342677 5.53e-01 80 chrIII:10151902-10151982 3.63e-02 80 chrI:3675887-3675967 2.00e-04 26_[+5(9.90e-05)]_46 chrI:5294567-5294647 8.32e-05 1_[+1(8.17e-05)]_48_[+4(4.05e-05)]_\ 15 chrIII:5755367-5755447 2.51e-01 80 chrIII:2170741-2170821 1.17e-02 23_[+3(8.21e-05)]_4_[+2(4.64e-05)]_\ 37 chrX:16483954-16484034 6.85e-01 80 chrII:4767779-4767859 1.05e-03 80 chrIV:12584298-12584378 1.47e-01 80 chrI:11595225-11595305 3.00e-01 80 chrV:9165472-9165552 2.79e-03 80 chrIV:12637489-12637569 2.08e-01 80 chrX:15634118-15634198 1.48e-02 39_[+2(4.64e-05)]_33 chrI:4030670-4030750 3.46e-03 44_[+3(1.27e-05)]_28 chrI:14764937-14765017 1.16e-02 80 chrX:11571898-11571978 9.05e-02 80 chrIII:9905548-9905628 1.62e-01 56_[+1(8.17e-05)]_16 chrV:1366252-1366332 1.64e-01 80 chrI:10145315-10145395 3.51e-02 20_[+3(8.21e-05)]_52 chrIV:664278-664358 6.76e-01 80 chrII:15194038-15194118 9.22e-03 22_[+5(1.53e-05)]_50 chrIII:3811552-3811632 3.01e-02 80 chrV:11074581-11074661 5.99e-02 17_[+4(2.62e-05)]_55 chrV:9225780-9225860 5.79e-02 80 chrII:1736531-1736611 2.43e-02 53_[+3(1.27e-05)]_19 chrV:14322966-14323046 1.79e-02 40_[+2(4.64e-05)]_2_[+2(7.19e-05)]_\ 22 chrIV:8040811-8040891 6.84e-01 80 chrX:5659808-5659888 6.20e-03 47_[+3(8.21e-05)]_25 chrX:7129620-7129700 1.69e-01 45_[+2(7.19e-05)]_27 chrX:9705724-9705804 1.91e-01 80 chrX:10068583-10068663 1.75e-02 59_[+3(8.21e-05)]_13 chrIII:2656323-2656403 1.07e-03 38_[+3(2.90e-05)]_16_[+2(2.09e-05)]_\ 10 chrIII:13127320-13127400 6.33e-03 80 chrX:15564510-15564590 4.27e-02 80 chrIII:3161766-3161846 1.77e-01 16_[+2(7.19e-05)]_56 chrIII:4323312-4323392 1.02e-02 49_[+2(4.64e-05)]_23 chrII:6148544-6148624 5.50e-01 80 chrIII:844157-844237 1.25e-01 80 chrX:5820218-5820298 2.34e-04 36_[+5(4.12e-05)]_14_[+1(2.40e-05)]_\ 14 chrIII:3978567-3978647 6.13e-03 59_[+1(2.40e-05)]_13 chrIII:5047371-5047451 7.98e-01 80 chrV:1155016-1155096 4.57e-02 63_[+5(1.53e-05)]_9 chrX:6240437-6240517 1.76e-01 80 chrIII:13012114-13012194 3.86e-01 80 chrI:5599565-5599645 2.45e-01 80 chrX:12204468-12204548 3.18e-01 80 chrII:11602684-11602764 6.44e-01 80 chrX:3455687-3455767 2.53e-01 30_[+1(8.17e-05)]_42 chrX:12643106-12643186 2.07e-01 80 chrII:6709138-6709218 1.04e-03 6_[+5(1.53e-05)]_30_[+1(8.17e-05)]_\ [+1(8.17e-05)]_20 chrV:1890161-1890241 3.39e-02 80 chrV:11140494-11140574 8.77e-02 6_[+2(4.64e-05)]_66 chrX:16263453-16263533 1.18e-01 40_[+5(4.12e-05)]_32 chrX:13846184-13846264 6.33e-02 25_[+5(1.53e-05)]_47 chrI:7883876-7883956 4.42e-01 80 chrII:4184158-4184238 7.31e-04 2_[+2(2.09e-05)]_70 chrV:7884581-7884661 1.20e-01 80 chrI:6284771-6284851 8.04e-01 80 chrV:12517921-12518001 4.75e-02 80 chrV:11677607-11677687 1.49e-02 62_[+3(8.21e-05)]_10 chrV:7822801-7822881 1.74e-02 80 chrII:2197679-2197759 3.33e-01 80 chrII:7714931-7715011 2.30e-02 63_[+4(5.74e-05)]_9 chrV:12158546-12158626 1.34e-04 70_[+1(8.17e-05)]_2 chrII:14036879-14036959 6.48e-02 80 chrV:3388505-3388585 6.48e-03 57_[+1(4.33e-05)]_15 chrV:19352128-19352208 2.73e-03 10_[+4(1.96e-05)]_28_[+1(2.40e-05)]_\ 26 chrIII:4612772-4612852 1.26e-01 80 chrIV:5915340-5915420 3.86e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************