******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/let-607.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:11825572-11825652 1.0000 80 chrIII:4918467-4918547 1.0000 80 chrI:2687824-2687904 1.0000 80 chrIV:10157630-10157710 1.0000 80 chrV:20830577-20830657 1.0000 80 chrV:9615892-9615972 1.0000 80 chrV:12245493-12245573 1.0000 80 chrX:14981745-14981825 1.0000 80 chrV:7749842-7749922 1.0000 80 chrI:8124937-8125017 1.0000 80 chrIII:11721604-11721684 1.0000 80 chrI:5885368-5885448 1.0000 80 chrI:3094325-3094405 1.0000 80 chrV:12208817-12208897 1.0000 80 chrV:9679302-9679382 1.0000 80 chrIII:9786932-9787012 1.0000 80 chrIII:10656205-10656285 1.0000 80 chrIII:7167361-7167441 1.0000 80 chrIII:13528646-13528726 1.0000 80 chrIV:5188806-5188886 1.0000 80 chrI:6923882-6923962 1.0000 80 chrX:4971107-4971187 1.0000 80 chrIV:2893258-2893338 1.0000 80 chrV:11763060-11763140 1.0000 80 chrIV:7634792-7634872 1.0000 80 chrX:4974641-4974721 1.0000 80 chrIV:12835527-12835607 1.0000 80 chrII:3071526-3071606 1.0000 80 chrX:12484259-12484339 1.0000 80 chrX:17198013-17198093 1.0000 80 chrI:2628302-2628382 1.0000 80 chrX:4862264-4862344 1.0000 80 chrII:4715806-4715886 1.0000 80 chrIII:6163507-6163587 1.0000 80 chrV:5115075-5115155 1.0000 80 chrIII:8133499-8133579 1.0000 80 chrX:5839800-5839880 1.0000 80 chrI:4578991-4579071 1.0000 80 chrX:5346495-5346575 1.0000 80 chrIII:4187037-4187117 1.0000 80 chrI:45140-45220 1.0000 80 chrV:7748176-7748256 1.0000 80 chrX:7296493-7296573 1.0000 80 chrIV:9118465-9118545 1.0000 80 chrI:7726534-7726614 1.0000 80 chrI:6578440-6578520 1.0000 80 chrIV:4605759-4605839 1.0000 80 chrIII:10078939-10079019 1.0000 80 chrII:12353971-12354051 1.0000 80 chrI:6577865-6577945 1.0000 80 chrIII:10868735-10868815 1.0000 80 chrI:5680983-5681063 1.0000 80 chrX:2422268-2422348 1.0000 80 chrX:5400652-5400732 1.0000 80 chrX:1117449-1117529 1.0000 80 chrX:15007031-15007111 1.0000 80 chrV:12797091-12797171 1.0000 80 chrIII:13390125-13390205 1.0000 80 chrX:645725-645805 1.0000 80 chrV:9507087-9507167 1.0000 80 chrX:3611349-3611429 1.0000 80 chrII:5512584-5512664 1.0000 80 chrX:15689395-15689475 1.0000 80 chrX:16153889-16153969 1.0000 80 chrI:10036048-10036128 1.0000 80 chrII:13190523-13190603 1.0000 80 chrI:5290823-5290903 1.0000 80 chrX:15944354-15944434 1.0000 80 chrIII:9638280-9638360 1.0000 80 chrII:10918389-10918469 1.0000 80 chrII:621326-621406 1.0000 80 chrII:9741546-9741626 1.0000 80 chrX:14756030-14756110 1.0000 80 chrV:4360136-4360216 1.0000 80 chrIV:9899441-9899521 1.0000 80 chrX:17702734-17702814 1.0000 80 chrIV:1740231-1740311 1.0000 80 chrIV:9333196-9333276 1.0000 80 chrIV:10003789-10003869 1.0000 80 chrI:4671907-4671987 1.0000 80 chrIV:3613435-3613515 1.0000 80 chrIV:1739542-1739622 1.0000 80 chrIV:7182916-7182996 1.0000 80 chrII:9891978-9892058 1.0000 80 chrIV:337487-337567 1.0000 80 chrII:12518189-12518269 1.0000 80 chrIII:12658749-12658829 1.0000 80 chrX:3572650-3572730 1.0000 80 chrV:8283104-8283184 1.0000 80 chrV:10960708-10960788 1.0000 80 chrV:8217796-8217876 1.0000 80 chrV:14895801-14895881 1.0000 80 chrI:6581322-6581402 1.0000 80 chrII:12028041-12028121 1.0000 80 chrV:11986282-11986362 1.0000 80 chrIV:12991785-12991865 1.0000 80 chrII:9622257-9622337 1.0000 80 chrIV:4557872-4557952 1.0000 80 chrV:7742658-7742738 1.0000 80 chrV:123688-123768 1.0000 80 chrI:6582660-6582740 1.0000 80 chrIII:3621324-3621404 1.0000 80 chrIV:4821192-4821272 1.0000 80 chrI:6562520-6562600 1.0000 80 chrIV:4544438-4544518 1.0000 80 chrX:17408967-17409047 1.0000 80 chrX:12869469-12869549 1.0000 80 chrIV:8261046-8261126 1.0000 80 chrIV:8952361-8952441 1.0000 80 chrI:9331479-9331559 1.0000 80 chrII:7695820-7695900 1.0000 80 chrIV:6574535-6574615 1.0000 80 chrV:14830962-14831042 1.0000 80 chrIV:13453519-13453599 1.0000 80 chrV:10968125-10968205 1.0000 80 chrX:15599149-15599229 1.0000 80 chrIV:5089127-5089207 1.0000 80 chrI:7723319-7723399 1.0000 80 chrIII:13734039-13734119 1.0000 80 chrX:2018356-2018436 1.0000 80 chrIV:8113311-8113391 1.0000 80 chrII:9620682-9620762 1.0000 80 chrX:7291414-7291494 1.0000 80 chrI:14931542-14931622 1.0000 80 chrV:20499122-20499202 1.0000 80 chrV:13164028-13164108 1.0000 80 chrII:5429861-5429941 1.0000 80 chrII:13973665-13973745 1.0000 80 chrI:6572837-6572917 1.0000 80 chrI:1914050-1914130 1.0000 80 chrIII:9571037-9571117 1.0000 80 chrII:8400252-8400332 1.0000 80 chrI:6589184-6589264 1.0000 80 chrIV:12361782-12361862 1.0000 80 chrI:3805821-3805901 1.0000 80 chrIV:14456821-14456901 1.0000 80 chrIV:9538321-9538401 1.0000 80 chrIV:3012527-3012607 1.0000 80 chrV:19207111-19207191 1.0000 80 chrII:8965010-8965090 1.0000 80 chrI:12343572-12343652 1.0000 80 chrI:11014339-11014419 1.0000 80 chrV:20090873-20090953 1.0000 80 chrIII:5427277-5427357 1.0000 80 chrI:6585566-6585646 1.0000 80 chrII:13297755-13297835 1.0000 80 chrIII:3875135-3875215 1.0000 80 chrII:11423473-11423553 1.0000 80 chrX:12976202-12976282 1.0000 80 chrV:4702613-4702693 1.0000 80 chrIV:4394068-4394148 1.0000 80 chrIII:8051122-8051202 1.0000 80 chrX:381168-381248 1.0000 80 chrX:8193354-8193434 1.0000 80 chrX:440549-440629 1.0000 80 chrII:8429136-8429216 1.0000 80 chrI:8529531-8529611 1.0000 80 chrV:10435333-10435413 1.0000 80 chrX:15508074-15508154 1.0000 80 chrI:5287395-5287475 1.0000 80 chrII:7237047-7237127 1.0000 80 chrI:12572456-12572536 1.0000 80 chrIII:11087549-11087629 1.0000 80 chrX:11515553-11515633 1.0000 80 chrIII:13258936-13259016 1.0000 80 chrV:10161065-10161145 1.0000 80 chrIV:855651-855731 1.0000 80 chrX:823914-823994 1.0000 80 chrIII:7770110-7770190 1.0000 80 chrX:11370277-11370357 1.0000 80 chrI:6584750-6584830 1.0000 80 chrX:3772575-3772655 1.0000 80 chrIV:7841334-7841414 1.0000 80 chrII:9624280-9624360 1.0000 80 chrIV:10631091-10631171 1.0000 80 chrV:4495364-4495444 1.0000 80 chrX:11680844-11680924 1.0000 80 chrIV:17387803-17387883 1.0000 80 chrII:7023768-7023848 1.0000 80 chrII:9740806-9740886 1.0000 80 chrX:11710440-11710520 1.0000 80 chrX:3501094-3501174 1.0000 80 chrI:14101211-14101291 1.0000 80 chrIII:13608020-13608100 1.0000 80 chrV:6413268-6413348 1.0000 80 chrX:11519228-11519308 1.0000 80 chrIV:12834069-12834149 1.0000 80 chrV:2308414-2308494 1.0000 80 chrII:5575071-5575151 1.0000 80 chrIII:9331245-9331325 1.0000 80 chrV:4491454-4491534 1.0000 80 chrX:15779648-15779728 1.0000 80 chrI:4650965-4651045 1.0000 80 chrX:8421753-8421833 1.0000 80 chrIV:7549931-7550011 1.0000 80 chrII:13036914-13036994 1.0000 80 chrV:13377268-13377348 1.0000 80 chrX:12911382-12911462 1.0000 80 chrV:10371365-10371445 1.0000 80 chrIII:7730560-7730640 1.0000 80 chrX:15599963-15600043 1.0000 80 chrX:5100913-5100993 1.0000 80 chrIII:10466174-10466254 1.0000 80 chrV:7744229-7744309 1.0000 80 chrV:5329075-5329155 1.0000 80 chrX:5780843-5780923 1.0000 80 chrX:12982843-12982923 1.0000 80 chrIII:13067029-13067109 1.0000 80 chrII:9738961-9739041 1.0000 80 chrIII:2733721-2733801 1.0000 80 chrIII:4467903-4467983 1.0000 80 chrII:12518983-12519063 1.0000 80 chrV:12952413-12952493 1.0000 80 chrX:12001728-12001808 1.0000 80 chrIV:5590338-5590418 1.0000 80 chrX:15842700-15842780 1.0000 80 chrIV:128800-128880 1.0000 80 chrIII:9528972-9529052 1.0000 80 chrIII:5015270-5015350 1.0000 80 chrIV:5134004-5134084 1.0000 80 chrII:7864412-7864492 1.0000 80 chrI:10429563-10429643 1.0000 80 chrI:9386081-9386161 1.0000 80 chrIII:600776-600856 1.0000 80 chrIV:10858788-10858868 1.0000 80 chrIV:1239828-1239908 1.0000 80 chrI:6974313-6974393 1.0000 80 chrI:6558924-6559004 1.0000 80 chrX:11679768-11679848 1.0000 80 chrIV:7325882-7325962 1.0000 80 chrI:6732584-6732664 1.0000 80 chrIII:12325381-12325461 1.0000 80 chrX:14970487-14970567 1.0000 80 chrX:6932407-6932487 1.0000 80 chrV:9928082-9928162 1.0000 80 chrIII:11380763-11380843 1.0000 80 chrIII:5914908-5914988 1.0000 80 chrX:9540604-9540684 1.0000 80 chrX:4144555-4144635 1.0000 80 chrIV:15929958-15930038 1.0000 80 chrI:7355818-7355898 1.0000 80 chrII:13955511-13955591 1.0000 80 chrX:10679357-10679437 1.0000 80 chrIV:6910247-6910327 1.0000 80 chrII:14813778-14813858 1.0000 80 chrV:11650928-11651008 1.0000 80 chrI:1229425-1229505 1.0000 80 chrI:5420392-5420472 1.0000 80 chrI:15041563-15041643 1.0000 80 chrX:5018378-5018458 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_let-607/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/let-607.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.295 C 0.209 G 0.211 T 0.285 Background letter frequencies (from file dataset with add-one prior applied): A 0.295 C 0.209 G 0.212 T 0.285 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF DMCACGTS MEME-1 width = 8 sites = 45 llr = 381 E-value = 1.1e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif DMCACGTS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 26:a:::: pos.-specific C 14a:a::4 probability G 4::::a:5 matrix T 3:::::a2 bits 2.3 * ** 2.0 * ** 1.8 ***** 1.6 ***** Relative 1.4 ***** Entropy 1.1 ***** (12.2 bits) 0.9 ****** 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GACACGTG consensus TC C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMCACGTS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:15929958-15930038 21 7.31e-06 CAATTTTCCC GCCACGTG TCAATTCGGT chrII:3071526-3071606 36 7.31e-06 CACTGGTGGT GCCACGTG GCGGGGAACG chrI:5420392-5420472 40 1.76e-05 AACGGCAAAA GACACGTG TACTTTTTGG chrIV:4821192-4821272 63 1.76e-05 GAACATTGGT GACACGTG GTTTTGGAAT chrII:12028041-12028121 54 1.76e-05 TGTGTAAATA GACACGTG TGTGTGTTGG chrI:5680983-5681063 3 1.76e-05 TT GACACGTG GTTGAGCAGT chrI:7726534-7726614 25 1.76e-05 AACTATTTTT GACACGTG GCTTTTCTCT chrIII:5914908-5914988 4 2.48e-05 CGT GCCACGTC AGTTCGCGAT chrIII:11087549-11087629 29 2.48e-05 ATCAGATATT GCCACGTC ACCAAGCATT chrIV:8952361-8952441 11 2.48e-05 ATAGCATTGT GCCACGTC GATCATCCCA chrIII:4187037-4187117 41 2.48e-05 ATCGACCGCG GCCACGTC AACTTTCCCA chrI:4578991-4579071 39 2.48e-05 CACTCCAGTT GCCACGTC ATTAGTGGAG chrIII:6163507-6163587 34 2.48e-05 AGTATTCTGA GCCACGTC ATGATGCTGC chrIII:12325381-12325461 2 3.50e-05 T GACACGTC ATTGACTTAT chrII:8429136-8429216 36 3.50e-05 CAGAAAACCT GACACGTC ATCTTATTTA chrX:12911382-12911462 47 4.49e-05 TATCGGCTCC TCCACGTG CCTAGTTACG chrI:12572456-12572536 31 4.49e-05 CGTAAAAACT TCCACGTG GCTTACGCGA chrX:8193354-8193434 35 4.49e-05 AATCACGAGT TCCACGTG TTCTTGTAAC chrV:20090873-20090953 45 4.49e-05 GCCATCTTCC TCCACGTG TACATTTTCT chrI:8124937-8125017 58 4.49e-05 TATCTCGGTT TCCACGTG TATACCTGTC chrI:8529531-8529611 20 5.87e-05 AACGTCAGAG TACACGTG GCAAAAATCG chrIV:8113311-8113391 65 5.87e-05 GTCGTACGCC TACACGTG GCTAAATC chrIII:8133499-8133579 14 5.87e-05 CTCAGTTTAG TACACGTG TATCAGGCAT chrV:12952413-12952493 50 6.84e-05 GTGTACAGAT TCCACGTC GCGCTGGCCG chrII:12518983-12519063 16 9.23e-05 TTCTTTCTCG TACACGTC AATCAGTGCC chrII:5575071-5575151 2 9.23e-05 T TACACGTC AAAAACGGTC chrII:5429861-5429941 11 9.23e-05 TTTAGCGAGT TACACGTC GAAAGTACGC chrI:6974313-6974393 19 1.07e-04 GACCACATTC AACACGTG TCAGGGTGTT chrIV:1239828-1239908 18 1.07e-04 AAAACTGCAC AACACGTG TAGTTTTGCG chrIII:2733721-2733801 25 1.07e-04 TTATCGAGAA AACACGTG AGCAAGGCAG chrX:5780843-5780923 57 1.07e-04 TACAAAATGG AACACGTG GCATGTGCAC chrIV:5089127-5089207 10 1.07e-04 AGCAGGAGC AACACGTG GAGCTTGAGC chrIV:6910247-6910327 69 1.17e-04 GGACGAGTTT ACCACGTC TTTC chrIII:9331245-9331325 33 1.17e-04 CGCAAACACC ACCACGTC GGAATGCACA chrI:15041563-15041643 15 1.31e-04 GAAGAAAAAG AACACGTC AGCACACATA chrI:5885368-5885448 22 1.38e-04 CATTCTAATT CCCACGTG ATTTCTAAAA chrIV:17387803-17387883 47 1.58e-04 TTTCTCGGAG CACACGTG TTTTAATTTC chrI:10036048-10036128 40 1.58e-04 TAGACCTACG GCCACGTT GGCACACATA chrIII:11380763-11380843 27 1.72e-04 TGAGGAGGAA GACACGTT GGAAGTTGTG chrII:9624280-9624360 9 1.89e-04 CGTTTATG CACACGTC AGTTAAACGG chrI:3094325-3094405 59 2.02e-04 TGAGAAGAGT TCCACGTT GCAATAGTCG chrX:14981745-14981825 26 2.02e-04 ATCATGGGGC TCCACGTT CCAGCTAGTG chrV:2308414-2308494 45 2.54e-04 ATATGTTTCG AACACGTT TAAAATGTTT chrIV:7182916-7182996 60 2.54e-04 TTTTCAAATA AACACGTT ATCACTGCTC chrI:1229425-1229505 72 2.77e-04 CTGACACGGA CACACGTT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMCACGTS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:15929958-15930038 7.3e-06 20_[+1]_52 chrII:3071526-3071606 7.3e-06 35_[+1]_37 chrI:5420392-5420472 1.8e-05 39_[+1]_33 chrIV:4821192-4821272 1.8e-05 62_[+1]_10 chrII:12028041-12028121 1.8e-05 53_[+1]_19 chrI:5680983-5681063 1.8e-05 2_[+1]_70 chrI:7726534-7726614 1.8e-05 24_[+1]_48 chrIII:5914908-5914988 2.5e-05 3_[+1]_69 chrIII:11087549-11087629 2.5e-05 28_[+1]_44 chrIV:8952361-8952441 2.5e-05 10_[+1]_62 chrIII:4187037-4187117 2.5e-05 40_[+1]_32 chrI:4578991-4579071 2.5e-05 38_[+1]_34 chrIII:6163507-6163587 2.5e-05 33_[+1]_39 chrIII:12325381-12325461 3.5e-05 1_[+1]_71 chrII:8429136-8429216 3.5e-05 35_[+1]_37 chrX:12911382-12911462 4.5e-05 46_[+1]_26 chrI:12572456-12572536 4.5e-05 30_[+1]_42 chrX:8193354-8193434 4.5e-05 34_[+1]_38 chrV:20090873-20090953 4.5e-05 44_[+1]_28 chrI:8124937-8125017 4.5e-05 57_[+1]_15 chrI:8529531-8529611 5.9e-05 19_[+1]_53 chrIV:8113311-8113391 5.9e-05 64_[+1]_8 chrIII:8133499-8133579 5.9e-05 13_[+1]_59 chrV:12952413-12952493 6.8e-05 49_[+1]_23 chrII:12518983-12519063 9.2e-05 15_[+1]_57 chrII:5575071-5575151 9.2e-05 1_[+1]_71 chrII:5429861-5429941 9.2e-05 10_[+1]_62 chrI:6974313-6974393 0.00011 18_[+1]_54 chrIV:1239828-1239908 0.00011 17_[+1]_55 chrIII:2733721-2733801 0.00011 24_[+1]_48 chrX:5780843-5780923 0.00011 56_[+1]_16 chrIV:5089127-5089207 0.00011 9_[+1]_63 chrIV:6910247-6910327 0.00012 68_[+1]_4 chrIII:9331245-9331325 0.00012 32_[+1]_40 chrI:15041563-15041643 0.00013 14_[+1]_58 chrI:5885368-5885448 0.00014 21_[+1]_51 chrIV:17387803-17387883 0.00016 46_[+1]_26 chrI:10036048-10036128 0.00016 39_[+1]_33 chrIII:11380763-11380843 0.00017 26_[+1]_46 chrII:9624280-9624360 0.00019 8_[+1]_64 chrI:3094325-3094405 0.0002 58_[+1]_14 chrX:14981745-14981825 0.0002 25_[+1]_47 chrV:2308414-2308494 0.00025 44_[+1]_28 chrIV:7182916-7182996 0.00025 59_[+1]_13 chrI:1229425-1229505 0.00028 71_[+1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMCACGTS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DMCACGTS width=8 seqs=45 chrIV:15929958-15930038 ( 21) GCCACGTG 1 chrII:3071526-3071606 ( 36) GCCACGTG 1 chrI:5420392-5420472 ( 40) GACACGTG 1 chrIV:4821192-4821272 ( 63) GACACGTG 1 chrII:12028041-12028121 ( 54) GACACGTG 1 chrI:5680983-5681063 ( 3) GACACGTG 1 chrI:7726534-7726614 ( 25) GACACGTG 1 chrIII:5914908-5914988 ( 4) GCCACGTC 1 chrIII:11087549-11087629 ( 29) GCCACGTC 1 chrIV:8952361-8952441 ( 11) GCCACGTC 1 chrIII:4187037-4187117 ( 41) GCCACGTC 1 chrI:4578991-4579071 ( 39) GCCACGTC 1 chrIII:6163507-6163587 ( 34) GCCACGTC 1 chrIII:12325381-12325461 ( 2) GACACGTC 1 chrII:8429136-8429216 ( 36) GACACGTC 1 chrX:12911382-12911462 ( 47) TCCACGTG 1 chrI:12572456-12572536 ( 31) TCCACGTG 1 chrX:8193354-8193434 ( 35) TCCACGTG 1 chrV:20090873-20090953 ( 45) TCCACGTG 1 chrI:8124937-8125017 ( 58) TCCACGTG 1 chrI:8529531-8529611 ( 20) TACACGTG 1 chrIV:8113311-8113391 ( 65) TACACGTG 1 chrIII:8133499-8133579 ( 14) TACACGTG 1 chrV:12952413-12952493 ( 50) TCCACGTC 1 chrII:12518983-12519063 ( 16) TACACGTC 1 chrII:5575071-5575151 ( 2) TACACGTC 1 chrII:5429861-5429941 ( 11) TACACGTC 1 chrI:6974313-6974393 ( 19) AACACGTG 1 chrIV:1239828-1239908 ( 18) AACACGTG 1 chrIII:2733721-2733801 ( 25) AACACGTG 1 chrX:5780843-5780923 ( 57) AACACGTG 1 chrIV:5089127-5089207 ( 10) AACACGTG 1 chrIV:6910247-6910327 ( 69) ACCACGTC 1 chrIII:9331245-9331325 ( 33) ACCACGTC 1 chrI:15041563-15041643 ( 15) AACACGTC 1 chrI:5885368-5885448 ( 22) CCCACGTG 1 chrIV:17387803-17387883 ( 47) CACACGTG 1 chrI:10036048-10036128 ( 40) GCCACGTT 1 chrIII:11380763-11380843 ( 27) GACACGTT 1 chrII:9624280-9624360 ( 9) CACACGTC 1 chrI:3094325-3094405 ( 59) TCCACGTT 1 chrX:14981745-14981825 ( 26) TCCACGTT 1 chrV:2308414-2308494 ( 45) AACACGTT 1 chrIV:7182916-7182996 ( 60) AACACGTT 1 chrI:1229425-1229505 ( 72) CACACGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMCACGTS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5458 E= 1.1e-014 -41 -123 84 13 91 109 -1214 -1214 -1214 226 -1214 -1214 176 -1214 -1214 -1214 -1214 226 -1214 -1214 -1214 -1214 224 -1214 -1214 -1214 -1214 181 -1214 77 121 -87 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMCACGTS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 1.1e-014 0.222222 0.088889 0.377778 0.311111 0.555556 0.444444 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.355556 0.488889 0.155556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMCACGTS MEME-1 regular expression -------------------------------------------------------------------------------- [GTA][AC]CACGT[GC] -------------------------------------------------------------------------------- Time 5.00 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTCAATY MEME-2 width = 8 sites = 61 llr = 466 E-value = 1.7e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTCAATY MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1::a91: pos.-specific C :::a:::4 probability G :8:::::: matrix T a1a::195 bits 2.3 * 2.0 * 1.8 * 1.6 * *** Relative 1.4 * *** Entropy 1.1 ******* (11.0 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTCAATT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAATY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5100913-5100993 72 1.87e-05 ATCGAACATA TGTCAATC T chrV:4491454-4491534 42 1.87e-05 CTCGTCTACA TGTCAATC AAAATCAGGG chrV:4702613-4702693 1 1.87e-05 . tgtcaATC AGGGGCATGT chrII:8400252-8400332 9 1.87e-05 CGGTCACT TGTCAATC ATATGTATGT chrX:2018356-2018436 10 1.87e-05 TTCTCCATC TGTCAATC TACTCGATGC chrIV:4821192-4821272 31 1.87e-05 TTCTGATGTC TGTCAATC ACAAACTACG chrI:6582660-6582740 27 1.87e-05 GTCGTGAACA TGTCAATC GTCTTCTTTC chrIV:7182916-7182996 37 1.87e-05 CTTTTTTTTG TGTCAATC GTAATTTTTC chrIV:10003789-10003869 7 1.87e-05 GGTAAG TGTCAATC ATTAAAAACA chrX:4974641-4974721 15 1.87e-05 GTAGGAAGAA TGTCAATC AACCTTATCA chrX:4971107-4971187 65 1.87e-05 GCTTGCGAAC TGTCAATC TCACCCGC chrIV:10157630-10157710 61 1.87e-05 TAGTTGGAGG TGTCAATC ATTAGGCCTC chrX:11679768-11679848 44 4.41e-05 TTCACGAAAA TGTCAATT AGGCGCTAGT chrIII:5015270-5015350 46 4.41e-05 GTCTTCGCGT TGTCAATT GTCCGGTAAG chrV:7744229-7744309 44 4.41e-05 GTCGACCACC TGTCAATT ATTCTGAATG chrIV:12361782-12361862 5 4.41e-05 AAAT TGTCAATT TGATAAAGGT chrIII:12658749-12658829 25 4.41e-05 ACATGGTAGC TGTCAATT ATATCAATAG chrII:12518189-12518269 41 4.41e-05 ATCAATTGCC TGTCAATT TGAAATTTAA chrIII:9786932-9787012 15 4.41e-05 CTTATCAATT TGTCAATT TTACTGAACC chrV:9679302-9679382 4 4.41e-05 AAC TGTCAATT AATGTCCTGA chrI:5885368-5885448 63 4.41e-05 AACTTGAGTG TGTCAATT GTGTCGAAGT chrIII:4187037-4187117 73 6.92e-05 TTCATAGGGG TTTCAATC chrI:6558924-6559004 1 1.03e-04 . TTTCAATT TGGATCTATC chrI:6974313-6974393 71 1.03e-04 TCCCTATCTT TTTCAATT TT chrII:9620682-9620762 8 1.03e-04 aatgtca tttcaatt caaatcaatc chrV:14895801-14895881 22 1.03e-04 GCCAGTCTCA TTTCAATT TTCCCTCGTT chrII:4715806-4715886 29 1.03e-04 TTCACCtcta tttcaatt tcactggtct chrV:12208817-12208897 47 1.03e-04 GTGGAACTTT TTTCAATT CACTTCACAC chrIV:12835527-12835607 16 1.17e-04 AGTTCTCCTC TGTCAGTC AGAATGCATG chrIII:13067029-13067109 72 2.20e-04 AAATGGCAGG TGTCAGTT T chrX:11370277-11370357 25 2.20e-04 TTAATCTTTT TGCCAATC AGATTGACAT chrIV:4394068-4394148 1 2.20e-04 . CGTCAATC ATCCACCCGA chrIV:8952361-8952441 34 2.20e-04 TCCCATCATT CGTCAATC ATTCATTTCT chrII:9741546-9741626 28 2.20e-04 TTCAGCGTCA TGCCAATC TCAGCGCTCG chrIII:13390125-13390205 33 2.20e-04 TGTTGGAAAA CGTCAATC ATCTCGTAAA chrI:7726534-7726614 46 2.20e-04 TTTCTCTGGC TGTCAATA TCCTCATTTC chrV:5115075-5115155 12 2.20e-04 TGGCAGTGAT TGTCAGTT GATTACGATG chrV:11763060-11763140 5 2.20e-04 CAAA TGTCAATA TTTTATTATC chrI:8124937-8125017 72 2.20e-04 CGTGTATACC TGTCAATA T chrIV:5134004-5134084 7 3.39e-04 AAAATG TGTCAACT GATAAGGGAT chrII:9738961-9739041 49 3.39e-04 ATTGGCAGTT TGTCAACT TACTGATAAG chrV:5329075-5329155 67 3.39e-04 ATCAAGAAAC TGTCATTT TCTTTT chrV:10371365-10371445 38 3.39e-04 CTTGTTCCCG TGTCATTT TCTATTCTTG chrII:8965010-8965090 50 3.39e-04 GGCACACTTT TCTCAATC AATTGTCAGG chrX:15599149-15599229 70 3.39e-04 ATCTTGCAGC TGTCATTT TCA chrII:10918389-10918469 11 3.39e-04 TAATTAAACG TGTCATTT TATAATTTAA chrX:16153889-16153969 22 3.39e-04 ATTTGCAGTT TGTCAACT CATTCTGCAG chrX:3611349-3611429 60 3.39e-04 AAAAGTTTCC TGTCAAAC CGTGTCGCTT chrV:7748176-7748256 21 3.39e-04 CCCGTGGACC TGCCAATT TGTGCGCCTA chrV:7749842-7749922 36 3.39e-04 ATGTCGAAAA TGTCAAAC AAGAAAAGTG chrX:6932407-6932487 26 4.16e-04 AAATTTTGTC TATCAATC GGTAGATTGA chrIV:10858788-10858868 57 4.16e-04 TACCGCACTC TCTCAATT CCCTCTGTTT chrX:11680844-11680924 70 4.16e-04 ATTGTAAGAC TGTCAAAT GAA chrV:9507087-9507167 70 4.16e-04 TTATCATCGA TGTCAAAT GTC chrIV:4605759-4605839 70 4.16e-04 TTGCCGTCGT TATCAATC CCC chrX:12484259-12484339 57 4.16e-04 TTCCCACTTT TCTCAATT TCCGTGCCTT chrI:10429563-10429643 34 4.69e-04 GGTACTCGAA TATCAATT TAAGGGGAGA chrI:5287395-5287475 67 4.69e-04 TGAGCCTTCT TATCAATT GGTTTG chrX:5839800-5839880 62 4.69e-04 TAACCGTGCG TGTCTATC AAATTTGAAT chrIV:5188806-5188886 59 4.69e-04 CGGATTCAAA TGTCTATC ACAGGAGTTG chrI:6589184-6589264 29 4.94e-04 TTTCCATGTG TGTCTATT TCCACTAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAATY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5100913-5100993 1.9e-05 71_[+2]_1 chrV:4491454-4491534 1.9e-05 41_[+2]_31 chrV:4702613-4702693 1.9e-05 [+2]_72 chrII:8400252-8400332 1.9e-05 8_[+2]_64 chrX:2018356-2018436 1.9e-05 9_[+2]_63 chrIV:4821192-4821272 1.9e-05 30_[+2]_42 chrI:6582660-6582740 1.9e-05 26_[+2]_46 chrIV:7182916-7182996 1.9e-05 36_[+2]_36 chrIV:10003789-10003869 1.9e-05 6_[+2]_66 chrX:4974641-4974721 1.9e-05 14_[+2]_58 chrX:4971107-4971187 1.9e-05 64_[+2]_8 chrIV:10157630-10157710 1.9e-05 60_[+2]_12 chrX:11679768-11679848 4.4e-05 43_[+2]_29 chrIII:5015270-5015350 4.4e-05 45_[+2]_27 chrV:7744229-7744309 4.4e-05 43_[+2]_29 chrIV:12361782-12361862 4.4e-05 4_[+2]_68 chrIII:12658749-12658829 4.4e-05 24_[+2]_48 chrII:12518189-12518269 4.4e-05 40_[+2]_32 chrIII:9786932-9787012 4.4e-05 14_[+2]_58 chrV:9679302-9679382 4.4e-05 3_[+2]_69 chrI:5885368-5885448 4.4e-05 62_[+2]_10 chrIII:4187037-4187117 6.9e-05 72_[+2] chrI:6558924-6559004 0.0001 [+2]_72 chrI:6974313-6974393 0.0001 70_[+2]_2 chrII:9620682-9620762 0.0001 7_[+2]_65 chrV:14895801-14895881 0.0001 21_[+2]_51 chrII:4715806-4715886 0.0001 28_[+2]_44 chrV:12208817-12208897 0.0001 46_[+2]_26 chrIV:12835527-12835607 0.00012 15_[+2]_57 chrIII:13067029-13067109 0.00022 71_[+2]_1 chrX:11370277-11370357 0.00022 24_[+2]_48 chrIV:4394068-4394148 0.00022 [+2]_72 chrIV:8952361-8952441 0.00022 33_[+2]_39 chrII:9741546-9741626 0.00022 27_[+2]_45 chrIII:13390125-13390205 0.00022 32_[+2]_40 chrI:7726534-7726614 0.00022 45_[+2]_27 chrV:5115075-5115155 0.00022 11_[+2]_61 chrV:11763060-11763140 0.00022 4_[+2]_68 chrI:8124937-8125017 0.00022 71_[+2]_1 chrIV:5134004-5134084 0.00034 6_[+2]_66 chrII:9738961-9739041 0.00034 48_[+2]_24 chrV:5329075-5329155 0.00034 66_[+2]_6 chrV:10371365-10371445 0.00034 37_[+2]_35 chrII:8965010-8965090 0.00034 49_[+2]_23 chrX:15599149-15599229 0.00034 69_[+2]_3 chrII:10918389-10918469 0.00034 10_[+2]_62 chrX:16153889-16153969 0.00034 21_[+2]_51 chrX:3611349-3611429 0.00034 59_[+2]_13 chrV:7748176-7748256 0.00034 20_[+2]_52 chrV:7749842-7749922 0.00034 35_[+2]_37 chrX:6932407-6932487 0.00042 25_[+2]_47 chrIV:10858788-10858868 0.00042 56_[+2]_16 chrX:11680844-11680924 0.00042 69_[+2]_3 chrV:9507087-9507167 0.00042 69_[+2]_3 chrIV:4605759-4605839 0.00042 69_[+2]_3 chrX:12484259-12484339 0.00042 56_[+2]_16 chrI:10429563-10429643 0.00047 33_[+2]_39 chrI:5287395-5287475 0.00047 66_[+2]_6 chrX:5839800-5839880 0.00047 61_[+2]_11 chrIV:5188806-5188886 0.00047 58_[+2]_14 chrI:6589184-6589264 0.00049 28_[+2]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAATY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTCAATY width=8 seqs=61 chrX:5100913-5100993 ( 72) TGTCAATC 1 chrV:4491454-4491534 ( 42) TGTCAATC 1 chrV:4702613-4702693 ( 1) TGTCAATC 1 chrII:8400252-8400332 ( 9) TGTCAATC 1 chrX:2018356-2018436 ( 10) TGTCAATC 1 chrIV:4821192-4821272 ( 31) TGTCAATC 1 chrI:6582660-6582740 ( 27) TGTCAATC 1 chrIV:7182916-7182996 ( 37) TGTCAATC 1 chrIV:10003789-10003869 ( 7) TGTCAATC 1 chrX:4974641-4974721 ( 15) TGTCAATC 1 chrX:4971107-4971187 ( 65) TGTCAATC 1 chrIV:10157630-10157710 ( 61) TGTCAATC 1 chrX:11679768-11679848 ( 44) TGTCAATT 1 chrIII:5015270-5015350 ( 46) TGTCAATT 1 chrV:7744229-7744309 ( 44) TGTCAATT 1 chrIV:12361782-12361862 ( 5) TGTCAATT 1 chrIII:12658749-12658829 ( 25) TGTCAATT 1 chrII:12518189-12518269 ( 41) TGTCAATT 1 chrIII:9786932-9787012 ( 15) TGTCAATT 1 chrV:9679302-9679382 ( 4) TGTCAATT 1 chrI:5885368-5885448 ( 63) TGTCAATT 1 chrIII:4187037-4187117 ( 73) TTTCAATC 1 chrI:6558924-6559004 ( 1) TTTCAATT 1 chrI:6974313-6974393 ( 71) TTTCAATT 1 chrII:9620682-9620762 ( 8) TTTCAATT 1 chrV:14895801-14895881 ( 22) TTTCAATT 1 chrII:4715806-4715886 ( 29) TTTCAATT 1 chrV:12208817-12208897 ( 47) TTTCAATT 1 chrIV:12835527-12835607 ( 16) TGTCAGTC 1 chrIII:13067029-13067109 ( 72) TGTCAGTT 1 chrX:11370277-11370357 ( 25) TGCCAATC 1 chrIV:4394068-4394148 ( 1) CGTCAATC 1 chrIV:8952361-8952441 ( 34) CGTCAATC 1 chrII:9741546-9741626 ( 28) TGCCAATC 1 chrIII:13390125-13390205 ( 33) CGTCAATC 1 chrI:7726534-7726614 ( 46) TGTCAATA 1 chrV:5115075-5115155 ( 12) TGTCAGTT 1 chrV:11763060-11763140 ( 5) TGTCAATA 1 chrI:8124937-8125017 ( 72) TGTCAATA 1 chrIV:5134004-5134084 ( 7) TGTCAACT 1 chrII:9738961-9739041 ( 49) TGTCAACT 1 chrV:5329075-5329155 ( 67) TGTCATTT 1 chrV:10371365-10371445 ( 38) TGTCATTT 1 chrII:8965010-8965090 ( 50) TCTCAATC 1 chrX:15599149-15599229 ( 70) TGTCATTT 1 chrII:10918389-10918469 ( 11) TGTCATTT 1 chrX:16153889-16153969 ( 22) TGTCAACT 1 chrX:3611349-3611429 ( 60) TGTCAAAC 1 chrV:7748176-7748256 ( 21) TGCCAATT 1 chrV:7749842-7749922 ( 36) TGTCAAAC 1 chrX:6932407-6932487 ( 26) TATCAATC 1 chrIV:10858788-10858868 ( 57) TCTCAATT 1 chrX:11680844-11680924 ( 70) TGTCAAAT 1 chrV:9507087-9507167 ( 70) TGTCAAAT 1 chrIV:4605759-4605839 ( 70) TATCAATC 1 chrX:12484259-12484339 ( 57) TCTCAATT 1 chrI:10429563-10429643 ( 34) TATCAATT 1 chrI:5287395-5287475 ( 67) TATCAATT 1 chrX:5839800-5839880 ( 62) TGTCTATC 1 chrIV:5188806-5188886 ( 59) TGTCTATC 1 chrI:6589184-6589264 ( 29) TGTCTATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAATY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.50978 E= 1.7e-010 -1257 -209 -1257 174 -217 -209 186 -131 -1257 -209 -1257 174 -1257 226 -1257 -1257 169 -1257 -1257 -253 159 -1257 -210 -212 -217 -209 -1257 164 -258 103 -1257 88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAATY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 1.7e-010 0.000000 0.049180 0.000000 0.950820 0.065574 0.049180 0.770492 0.114754 0.000000 0.049180 0.000000 0.950820 0.000000 1.000000 0.000000 0.000000 0.950820 0.000000 0.000000 0.049180 0.885246 0.000000 0.049180 0.065574 0.065574 0.049180 0.000000 0.885246 0.049180 0.426230 0.000000 0.524590 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAATY MEME-2 regular expression -------------------------------------------------------------------------------- TGTCAAT[TC] -------------------------------------------------------------------------------- Time 8.63 secs. ******************************************************************************** ******************************************************************************** MOTIF TSTTATCA MEME-3 width = 8 sites = 33 llr = 292 E-value = 1.9e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSTTATCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::a::8 pos.-specific C 15::::a: probability G :3:::::2 matrix T 92aa:a:: bits 2.3 * 2.0 * 1.8 ***** 1.6 ***** Relative 1.4 * ***** Entropy 1.1 * ****** (12.8 bits) 0.9 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTTATCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTTATCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:600776-600856 24 2.51e-05 AAGCAGTGTT TCTTATCA ACTTATTGAT chrV:13377268-13377348 23 2.51e-05 TATCAGCTTT TCTTATCA GTTGGAGTTT chrV:6413268-6413348 67 2.51e-05 CCAAAGGCTA TCTTATCA ACTATC chrIII:13608020-13608100 38 2.51e-05 AATTGGAAAC TCTTATCA TCATTGATGA chrIV:10631091-10631171 3 2.51e-05 CT TCTTATCA CAGACCATAT chrIII:11087549-11087629 15 2.51e-05 AAAAACCGAT TCTTATCA GATATTGCCA chrIV:8952361-8952441 49 2.51e-05 ATCATTCATT TCTTATCA GTAGTTTCAG chrIV:1740231-1740311 32 2.51e-05 AAATCGATTT TCTTATCA GAACTACTAA chrX:16153889-16153969 73 2.51e-05 AAACGATGTG TCTTATCA chrI:7726534-7726614 66 2.51e-05 CTCATTTCAT TCTTATCA ACACAAA chrX:17198013-17198093 34 2.51e-05 TTTGGCAGAA TCTTATCA AGAAACGCGT chrIII:9786932-9787012 4 2.51e-05 GTT TCTTATCA ATTTGTCAAT chrV:11650928-11651008 51 5.05e-05 AATACACGAC TGTTATCA GCTGAAAGAG chrIV:7325882-7325962 36 5.05e-05 AAATGGCATC TGTTATCA GTGATTGCGG chrIII:5015270-5015350 8 5.05e-05 AGTTTTG TGTTATCA TTCTAAACGT chrIV:7841334-7841414 29 5.05e-05 CAATATATTT TGTTATCA GTTACGTGGA chrX:8193354-8193434 10 5.05e-05 ATCGATACG TGTTATCA GTGAAGCAAT chrII:13190523-13190603 39 5.05e-05 CACGTAAAGT TGTTATCA GTGCCATTTA chrX:15689395-15689475 73 5.05e-05 GTCGAAACAT TGTTATCA chrII:9624280-9624360 55 6.85e-05 TTGCATTTTT TCTTATCG GTTATAAAAT chrIV:855651-855731 6 6.85e-05 ATGTT TCTTATCG GGGTGTCTAA chrI:6572837-6572917 43 6.85e-05 TGATTTAGTA TCTTATCG TTTCTTCTAA chrX:8421753-8421833 15 1.03e-04 AATAATCACA TTTTATCA TGTTGTGACC chrIV:12834069-12834149 54 1.03e-04 TTTTCCAACT TTTTATCA TCGAATTTTG chrX:2018356-2018436 72 1.03e-04 TCCAAACCAC TTTTATCA T chrI:9331479-9331559 45 1.03e-04 TCCACTTATC TTTTATCA CTTCAACAAC chrX:14981745-14981825 1 1.03e-04 . TTTTATCA TGGAGTTATC chrX:17702734-17702814 43 1.21e-04 ATTTTAATTT CCTTATCA AAGTGACAGC chrX:4974641-4974721 25 1.21e-04 TGTCAATCAA CCTTATCA AAAGCACATT chrIII:2733721-2733801 13 1.39e-04 GTTTCAAATG TGTTATCG AGAAAACACG chrI:45140-45220 46 1.39e-04 GGTTTACCTG TGTTATCG GCGCGTGCAT chrX:15779648-15779728 36 1.58e-04 TGTCCTGAAA CGTTATCA CTTCCACCTG chrV:10435333-10435413 33 1.58e-04 ACGTATAATC CGTTATCA GTAAACCTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTTATCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:600776-600856 2.5e-05 23_[+3]_49 chrV:13377268-13377348 2.5e-05 22_[+3]_50 chrV:6413268-6413348 2.5e-05 66_[+3]_6 chrIII:13608020-13608100 2.5e-05 37_[+3]_35 chrIV:10631091-10631171 2.5e-05 2_[+3]_70 chrIII:11087549-11087629 2.5e-05 14_[+3]_58 chrIV:8952361-8952441 2.5e-05 48_[+3]_24 chrIV:1740231-1740311 2.5e-05 31_[+3]_41 chrX:16153889-16153969 2.5e-05 72_[+3] chrI:7726534-7726614 2.5e-05 65_[+3]_7 chrX:17198013-17198093 2.5e-05 33_[+3]_39 chrIII:9786932-9787012 2.5e-05 3_[+3]_69 chrV:11650928-11651008 5.1e-05 50_[+3]_22 chrIV:7325882-7325962 5.1e-05 35_[+3]_37 chrIII:5015270-5015350 5.1e-05 7_[+3]_65 chrIV:7841334-7841414 5.1e-05 28_[+3]_44 chrX:8193354-8193434 5.1e-05 9_[+3]_63 chrII:13190523-13190603 5.1e-05 38_[+3]_34 chrX:15689395-15689475 5.1e-05 72_[+3] chrII:9624280-9624360 6.9e-05 54_[+3]_18 chrIV:855651-855731 6.9e-05 5_[+3]_67 chrI:6572837-6572917 6.9e-05 42_[+3]_30 chrX:8421753-8421833 0.0001 14_[+3]_58 chrIV:12834069-12834149 0.0001 53_[+3]_19 chrX:2018356-2018436 0.0001 71_[+3]_1 chrI:9331479-9331559 0.0001 44_[+3]_28 chrX:14981745-14981825 0.0001 [+3]_72 chrX:17702734-17702814 0.00012 42_[+3]_30 chrX:4974641-4974721 0.00012 24_[+3]_48 chrIII:2733721-2733801 0.00014 12_[+3]_60 chrI:45140-45220 0.00014 45_[+3]_27 chrX:15779648-15779728 0.00016 35_[+3]_37 chrV:10435333-10435413 0.00016 32_[+3]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTTATCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSTTATCA width=8 seqs=33 chrIII:600776-600856 ( 24) TCTTATCA 1 chrV:13377268-13377348 ( 23) TCTTATCA 1 chrV:6413268-6413348 ( 67) TCTTATCA 1 chrIII:13608020-13608100 ( 38) TCTTATCA 1 chrIV:10631091-10631171 ( 3) TCTTATCA 1 chrIII:11087549-11087629 ( 15) TCTTATCA 1 chrIV:8952361-8952441 ( 49) TCTTATCA 1 chrIV:1740231-1740311 ( 32) TCTTATCA 1 chrX:16153889-16153969 ( 73) TCTTATCA 1 chrI:7726534-7726614 ( 66) TCTTATCA 1 chrX:17198013-17198093 ( 34) TCTTATCA 1 chrIII:9786932-9787012 ( 4) TCTTATCA 1 chrV:11650928-11651008 ( 51) TGTTATCA 1 chrIV:7325882-7325962 ( 36) TGTTATCA 1 chrIII:5015270-5015350 ( 8) TGTTATCA 1 chrIV:7841334-7841414 ( 29) TGTTATCA 1 chrX:8193354-8193434 ( 10) TGTTATCA 1 chrII:13190523-13190603 ( 39) TGTTATCA 1 chrX:15689395-15689475 ( 73) TGTTATCA 1 chrII:9624280-9624360 ( 55) TCTTATCG 1 chrIV:855651-855731 ( 6) TCTTATCG 1 chrI:6572837-6572917 ( 43) TCTTATCG 1 chrX:8421753-8421833 ( 15) TTTTATCA 1 chrIV:12834069-12834149 ( 54) TTTTATCA 1 chrX:2018356-2018436 ( 72) TTTTATCA 1 chrI:9331479-9331559 ( 45) TTTTATCA 1 chrX:14981745-14981825 ( 1) TTTTATCA 1 chrX:17702734-17702814 ( 43) CCTTATCA 1 chrX:4974641-4974721 ( 25) CCTTATCA 1 chrIII:2733721-2733801 ( 13) TGTTATCG 1 chrI:45140-45220 ( 46) TGTTATCG 1 chrX:15779648-15779728 ( 36) CGTTATCA 1 chrV:10435333-10435413 ( 33) CGTTATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTTATCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.87609 E= 1.9e-008 -1169 -79 -1169 163 -1169 130 66 -91 -1169 -1169 -1169 181 -1169 -1169 -1169 181 176 -1169 -1169 -1169 -1169 -1169 -1169 181 -1169 226 -1169 -1169 153 -1169 -48 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTTATCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.9e-008 0.000000 0.121212 0.000000 0.878788 0.000000 0.515152 0.333333 0.151515 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.848485 0.000000 0.151515 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTTATCA MEME-3 regular expression -------------------------------------------------------------------------------- T[CG]TTATCA -------------------------------------------------------------------------------- Time 12.19 secs. ******************************************************************************** ******************************************************************************** MOTIF RAWTGACA MEME-4 width = 8 sites = 36 llr = 301 E-value = 1.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAWTGACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 6a4::7:a pos.-specific C ::::::a: probability G 4:1:a3:: matrix T ::5a:::: bits 2.3 * * 2.0 * * 1.8 * * ** 1.6 * ** ** Relative 1.4 * ** ** Entropy 1.1 * ***** (12.1 bits) 0.9 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AATTGACA consensus G A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAWTGACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:7023768-7023848 20 1.96e-05 AGTAGGAAAT GATTGACA GACATGCGTC chrX:11370277-11370357 34 1.96e-05 TTGCCAATCA GATTGACA TACCTGGACT chrX:7291414-7291494 62 1.96e-05 GTACTATTTT GATTGACA GTCGTGCGAC chrII:9620682-9620762 65 1.96e-05 TCATCTTCTC GATTGACA CAACCTTG chrII:9622257-9622337 7 1.96e-05 ATGTGT GATTGACA CATGCCAAAT chrIII:10656205-10656285 13 1.96e-05 CCAAAATTTT GATTGACA GTCCCTCCAT chrX:15599149-15599229 30 4.68e-05 TTAAAGTTTA AATTGACA GCTTTACAAC chrV:8283104-8283184 12 4.68e-05 GAGATGGCGC AATTGACA GGAGCGATGT chrIV:337487-337567 38 4.68e-05 AAGACAGGTG AATTGACA AGTTATAGTC chrX:15944354-15944434 47 4.68e-05 GATGACTTAT AATTGACA TATTAGATGT chrIII:13390125-13390205 49 4.68e-05 TCATCTCGTA AATTGACA TGTCACAGCG chrIII:10868735-10868815 64 4.68e-05 CGATAAGTCA AATTGACA TGGGGCGGA chrX:5839800-5839880 38 4.68e-05 CACGCTGAAT AATTGACA TTGTGATAAC chrIII:5015270-5015350 65 6.71e-05 TCCGGTAAGA GAATGACA ACATGGAC chrV:9507087-9507167 14 6.71e-05 ATAACAAAAT GAATGACA TGCAATCGTG chrIII:13528646-13528726 23 6.71e-05 TCGGGAAAAT GAATGACA CACAGAAACG chrII:9738961-9739041 38 8.12e-05 GGTTTTGTTT GATTGGCA GTTTGTCAAC chrX:12982843-12982923 11 8.12e-05 TTCATTGGGA GATTGGCA GGCTCTTTGA chrX:3572650-3572730 15 8.12e-05 GTTAAAAAGT GATTGGCA GTTTTGTAAG chrV:12245493-12245573 33 8.12e-05 TGAACCTACT GATTGGCA GTGGACAGCT chrX:14970487-14970567 19 1.09e-04 CATGCGGCCG AAATGACA CGGAGAGCGG chrX:15508074-15508154 12 1.09e-04 AATCGGATAA AAATGACA AAAATGGCAT chrX:440549-440629 7 1.09e-04 ACATTC AAATGACA CGACTTTATT chrIII:4918467-4918547 57 1.09e-04 ACGTACGATG AAATGACA TGTAACTCCG chrV:4702613-4702693 39 1.29e-04 CGTATTCTAA AATTGGCA ATCAATTTCT chrIV:7325882-7325962 26 1.64e-04 AAACAAAAAG AAATGGCA TCTGTTATCA chrIII:13067029-13067109 62 1.64e-04 CTTATGAGAA AAATGGCA GGTGTCAGTT chrIV:7841334-7841414 46 1.64e-04 AGTTACGTGG AAATGGCA AACAGCACAT chrII:8400252-8400332 65 1.64e-04 CAATTTATTA AAATGGCA CATTTAGA chrX:14756030-14756110 53 1.64e-04 GTTCATGGGA AAATGGCA AAGATGGAAT chrX:3611349-3611429 31 1.64e-04 GCAAAGACAG AAATGGCA GAGCACTGCT chrV:10968125-10968205 73 1.78e-04 ATCGCAGAAA GAGTGACA chrX:17702734-17702814 51 1.99e-04 TTCCTTATCA AAGTGACA GCGTGACGAC chrII:12353971-12354051 22 1.99e-04 GCCCATCACA AAGTGACA GGCCAATATG chrI:1229425-1229505 60 2.38e-04 agaAGGAAAT GACTGACA CGGACACACG chrV:5115075-5115155 47 2.97e-04 GGCTCCCTTT GATGGACA GTTTGTTCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAWTGACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:7023768-7023848 2e-05 19_[+4]_53 chrX:11370277-11370357 2e-05 33_[+4]_39 chrX:7291414-7291494 2e-05 61_[+4]_11 chrII:9620682-9620762 2e-05 64_[+4]_8 chrII:9622257-9622337 2e-05 6_[+4]_66 chrIII:10656205-10656285 2e-05 12_[+4]_60 chrX:15599149-15599229 4.7e-05 29_[+4]_43 chrV:8283104-8283184 4.7e-05 11_[+4]_61 chrIV:337487-337567 4.7e-05 37_[+4]_35 chrX:15944354-15944434 4.7e-05 46_[+4]_26 chrIII:13390125-13390205 4.7e-05 48_[+4]_24 chrIII:10868735-10868815 4.7e-05 63_[+4]_9 chrX:5839800-5839880 4.7e-05 37_[+4]_35 chrIII:5015270-5015350 6.7e-05 64_[+4]_8 chrV:9507087-9507167 6.7e-05 13_[+4]_59 chrIII:13528646-13528726 6.7e-05 22_[+4]_50 chrII:9738961-9739041 8.1e-05 37_[+4]_35 chrX:12982843-12982923 8.1e-05 10_[+4]_62 chrX:3572650-3572730 8.1e-05 14_[+4]_58 chrV:12245493-12245573 8.1e-05 32_[+4]_40 chrX:14970487-14970567 0.00011 18_[+4]_54 chrX:15508074-15508154 0.00011 11_[+4]_61 chrX:440549-440629 0.00011 6_[+4]_66 chrIII:4918467-4918547 0.00011 56_[+4]_16 chrV:4702613-4702693 0.00013 38_[+4]_34 chrIV:7325882-7325962 0.00016 25_[+4]_47 chrIII:13067029-13067109 0.00016 61_[+4]_11 chrIV:7841334-7841414 0.00016 45_[+4]_27 chrII:8400252-8400332 0.00016 64_[+4]_8 chrX:14756030-14756110 0.00016 52_[+4]_20 chrX:3611349-3611429 0.00016 30_[+4]_42 chrV:10968125-10968205 0.00018 72_[+4] chrX:17702734-17702814 0.0002 50_[+4]_22 chrII:12353971-12354051 0.0002 21_[+4]_51 chrI:1229425-1229505 0.00024 59_[+4]_13 chrV:5115075-5115155 0.0003 46_[+4]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAWTGACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAWTGACA width=8 seqs=36 chrII:7023768-7023848 ( 20) GATTGACA 1 chrX:11370277-11370357 ( 34) GATTGACA 1 chrX:7291414-7291494 ( 62) GATTGACA 1 chrII:9620682-9620762 ( 65) GATTGACA 1 chrII:9622257-9622337 ( 7) GATTGACA 1 chrIII:10656205-10656285 ( 13) GATTGACA 1 chrX:15599149-15599229 ( 30) AATTGACA 1 chrV:8283104-8283184 ( 12) AATTGACA 1 chrIV:337487-337567 ( 38) AATTGACA 1 chrX:15944354-15944434 ( 47) AATTGACA 1 chrIII:13390125-13390205 ( 49) AATTGACA 1 chrIII:10868735-10868815 ( 64) AATTGACA 1 chrX:5839800-5839880 ( 38) AATTGACA 1 chrIII:5015270-5015350 ( 65) GAATGACA 1 chrV:9507087-9507167 ( 14) GAATGACA 1 chrIII:13528646-13528726 ( 23) GAATGACA 1 chrII:9738961-9739041 ( 38) GATTGGCA 1 chrX:12982843-12982923 ( 11) GATTGGCA 1 chrX:3572650-3572730 ( 15) GATTGGCA 1 chrV:12245493-12245573 ( 33) GATTGGCA 1 chrX:14970487-14970567 ( 19) AAATGACA 1 chrX:15508074-15508154 ( 12) AAATGACA 1 chrX:440549-440629 ( 7) AAATGACA 1 chrIII:4918467-4918547 ( 57) AAATGACA 1 chrV:4702613-4702693 ( 39) AATTGGCA 1 chrIV:7325882-7325962 ( 26) AAATGGCA 1 chrIII:13067029-13067109 ( 62) AAATGGCA 1 chrIV:7841334-7841414 ( 46) AAATGGCA 1 chrII:8400252-8400332 ( 65) AAATGGCA 1 chrX:14756030-14756110 ( 53) AAATGGCA 1 chrX:3611349-3611429 ( 31) AAATGGCA 1 chrV:10968125-10968205 ( 73) GAGTGACA 1 chrX:17702734-17702814 ( 51) AAGTGACA 1 chrII:12353971-12354051 ( 22) AAGTGACA 1 chrI:1229425-1229505 ( 60) GACTGACA 1 chrV:5115075-5115155 ( 47) GATGGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAWTGACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.11739 E= 1.3e-003 91 -1181 107 -1181 176 -1181 -1181 -1181 29 -291 -134 89 -1181 -1181 -293 177 -1181 -1181 224 -1181 124 -1181 53 -1181 -1181 226 -1181 -1181 176 -1181 -1181 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAWTGACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.3e-003 0.555556 0.000000 0.444444 0.000000 1.000000 0.000000 0.000000 0.000000 0.361111 0.027778 0.083333 0.527778 0.000000 0.000000 0.027778 0.972222 0.000000 0.000000 1.000000 0.000000 0.694444 0.000000 0.305556 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAWTGACA MEME-4 regular expression -------------------------------------------------------------------------------- [AG]A[TA]TG[AG]CA -------------------------------------------------------------------------------- Time 15.69 secs. ******************************************************************************** ******************************************************************************** MOTIF RACGTGGM MEME-5 width = 8 sites = 18 llr = 171 E-value = 6.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif RACGTGGM MEME-5 Description -------------------------------------------------------------------------------- Simplified A 4a:::::6 pos.-specific C ::8::::4 probability G 6:2a:aa1 matrix T ::::a::: bits 2.3 * ** 2.0 * ** 1.8 * **** 1.6 ****** Relative 1.4 ****** Entropy 1.1 ******* (13.7 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GACGTGGA consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACGTGGM MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4144555-4144635 20 1.79e-05 GTATACCCAT GACGTGGC CGAATCTGAG chrII:7864412-7864492 25 1.79e-05 ATTCGAATTT GACGTGGC ACAATCGGCT chrX:11710440-11710520 41 1.79e-05 GCACTTTTGC GACGTGGA GGAAGGAGTG chrIII:7770110-7770190 41 1.79e-05 GCTCAAATTC GACGTGGC TACTCGGTGT chrIII:13734039-13734119 46 1.79e-05 TGGCGCTGGT GACGTGGC AGTAGACCTC chrIV:4557872-4557952 39 1.79e-05 TGAAATCGAT GACGTGGC ACATGTGATC chrI:4671907-4671987 33 1.79e-05 AGAAGGTGCT GACGTGGC ACATATTTTT chrII:12353971-12354051 39 1.79e-05 AGGCCAATAT GACGTGGC GGTGGCCCCG chrI:15041563-15041643 46 4.28e-05 CACACGGTGC AACGTGGA TAGAGCGATA chrIV:10858788-10858868 38 4.28e-05 TGTAATTGCA AACGTGGA CTACCGCACT chrI:14101211-14101291 53 4.28e-05 ACTTTTACCG AACGTGGA ATTTTATATC chrIV:10631091-10631171 36 4.28e-05 GAAAAAGGAA AACGTGGA ACTCATAACT chrIV:7634792-7634872 24 4.28e-05 CACTAGCTGG AACGTGGA GCCATGGAGA chrV:12208817-12208897 34 4.28e-05 TCACAAACAA AACGTGGA ACTTTTTTCA chrIV:5134004-5134084 37 6.09e-05 TGATGCTGGG GAGGTGGA AAGGGACAGC chrIII:9638280-9638360 9 6.09e-05 GAAGAAAT GAGGTGGA CTGCAAACTG chrI:1914050-1914130 10 6.85e-05 ATCTGTTGT GACGTGGG AATTGTTGGG chrIV:10003789-10003869 56 9.37e-05 TATCGAAGTT AAGGTGGA AACCCAGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACGTGGM MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4144555-4144635 1.8e-05 19_[+5]_53 chrII:7864412-7864492 1.8e-05 24_[+5]_48 chrX:11710440-11710520 1.8e-05 40_[+5]_32 chrIII:7770110-7770190 1.8e-05 40_[+5]_32 chrIII:13734039-13734119 1.8e-05 45_[+5]_27 chrIV:4557872-4557952 1.8e-05 38_[+5]_34 chrI:4671907-4671987 1.8e-05 32_[+5]_40 chrII:12353971-12354051 1.8e-05 38_[+5]_34 chrI:15041563-15041643 4.3e-05 45_[+5]_27 chrIV:10858788-10858868 4.3e-05 37_[+5]_35 chrI:14101211-14101291 4.3e-05 52_[+5]_20 chrIV:10631091-10631171 4.3e-05 35_[+5]_37 chrIV:7634792-7634872 4.3e-05 23_[+5]_49 chrV:12208817-12208897 4.3e-05 33_[+5]_39 chrIV:5134004-5134084 6.1e-05 36_[+5]_36 chrIII:9638280-9638360 6.1e-05 8_[+5]_64 chrI:1914050-1914130 6.8e-05 9_[+5]_63 chrIV:10003789-10003869 9.4e-05 55_[+5]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACGTGGM MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RACGTGGM width=8 seqs=18 chrX:4144555-4144635 ( 20) GACGTGGC 1 chrII:7864412-7864492 ( 25) GACGTGGC 1 chrX:11710440-11710520 ( 41) GACGTGGA 1 chrIII:7770110-7770190 ( 41) GACGTGGC 1 chrIII:13734039-13734119 ( 46) GACGTGGC 1 chrIV:4557872-4557952 ( 39) GACGTGGC 1 chrI:4671907-4671987 ( 33) GACGTGGC 1 chrII:12353971-12354051 ( 39) GACGTGGC 1 chrI:15041563-15041643 ( 46) AACGTGGA 1 chrIV:10858788-10858868 ( 38) AACGTGGA 1 chrI:14101211-14101291 ( 53) AACGTGGA 1 chrIV:10631091-10631171 ( 36) AACGTGGA 1 chrIV:7634792-7634872 ( 24) AACGTGGA 1 chrV:12208817-12208897 ( 34) AACGTGGA 1 chrIV:5134004-5134084 ( 37) GAGGTGGA 1 chrIII:9638280-9638360 ( 9) GAGGTGGA 1 chrI:1914050-1914130 ( 10) GACGTGGG 1 chrIV:10003789-10003869 ( 56) AAGGTGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACGTGGM MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8329 E= 6.2e+000 40 -1081 153 -1081 176 -1081 -1081 -1081 -1081 199 -34 -1081 -1081 -1081 224 -1081 -1081 -1081 -1081 181 -1081 -1081 224 -1081 -1081 -1081 224 -1081 91 90 -193 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACGTGGM MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 6.2e+000 0.388889 0.000000 0.611111 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.555556 0.388889 0.055556 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACGTGGM MEME-5 regular expression -------------------------------------------------------------------------------- [GA]ACGTGG[AC] -------------------------------------------------------------------------------- Time 19.12 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11825572-11825652 5.68e-01 80 chrIII:4918467-4918547 1.28e-01 80 chrI:2687824-2687904 4.19e-01 80 chrIV:10157630-10157710 1.52e-02 23_[+2(1.87e-05)]_29_[+2(1.87e-05)]_\ 12 chrV:20830577-20830657 3.75e-01 80 chrV:9615892-9615972 4.46e-01 80 chrV:12245493-12245573 1.29e-01 32_[+4(8.12e-05)]_40 chrX:14981745-14981825 2.84e-03 80 chrV:7749842-7749922 2.82e-02 80 chrI:8124937-8125017 4.12e-03 57_[+1(4.49e-05)]_15 chrIII:11721604-11721684 8.63e-01 80 chrI:5885368-5885448 5.88e-03 62_[+2(4.41e-05)]_10 chrI:3094325-3094405 1.67e-02 80 chrV:12208817-12208897 8.28e-04 33_[+5(4.28e-05)]_39 chrV:9679302-9679382 4.14e-02 3_[+2(4.41e-05)]_69 chrIII:9786932-9787012 1.42e-03 3_[+3(2.51e-05)]_3_[+2(4.41e-05)]_\ 58 chrIII:10656205-10656285 2.08e-03 12_[+4(1.96e-05)]_60 chrIII:7167361-7167441 3.67e-01 80 chrIII:13528646-13528726 1.64e-01 22_[+4(6.71e-05)]_50 chrIV:5188806-5188886 8.47e-02 80 chrI:6923882-6923962 2.77e-01 80 chrX:4971107-4971187 1.55e-02 64_[+2(1.87e-05)]_8 chrIV:2893258-2893338 1.60e-01 80 chrV:11763060-11763140 1.29e-02 80 chrIV:7634792-7634872 7.79e-02 23_[+5(4.28e-05)]_49 chrX:4974641-4974721 1.49e-03 14_[+2(1.87e-05)]_58 chrIV:12835527-12835607 2.48e-01 80 chrII:3071526-3071606 1.14e-03 35_[+1(7.31e-06)]_37 chrX:12484259-12484339 1.29e-01 80 chrX:17198013-17198093 5.18e-03 33_[+3(2.51e-05)]_39 chrI:2628302-2628382 3.68e-01 80 chrX:4862264-4862344 3.77e-01 80 chrII:4715806-4715886 1.51e-02 80 chrIII:6163507-6163587 1.77e-02 33_[+1(2.48e-05)]_39 chrV:5115075-5115155 2.45e-02 80 chrIII:8133499-8133579 1.73e-03 13_[+1(5.87e-05)]_59 chrX:5839800-5839880 2.21e-02 37_[+4(4.68e-05)]_35 chrI:4578991-4579071 5.37e-03 38_[+1(2.48e-05)]_34 chrX:5346495-5346575 5.39e-01 80 chrIII:4187037-4187117 1.45e-04 40_[+1(2.48e-05)]_24_[+2(6.92e-05)] chrI:45140-45220 7.38e-02 80 chrV:7748176-7748256 2.72e-02 80 chrX:7296493-7296573 5.68e-01 80 chrIV:9118465-9118545 3.97e-01 80 chrI:7726534-7726614 2.67e-06 24_[+1(1.76e-05)]_33_[+3(2.51e-05)]_\ 7 chrI:6578440-6578520 2.45e-01 80 chrIV:4605759-4605839 1.84e-02 80 chrIII:10078939-10079019 8.15e-01 80 chrII:12353971-12354051 2.83e-03 38_[+5(1.79e-05)]_34 chrI:6577865-6577945 2.61e-02 80 chrIII:10868735-10868815 1.04e-02 63_[+4(4.68e-05)]_9 chrI:5680983-5681063 1.29e-02 2_[+1(1.76e-05)]_70 chrX:2422268-2422348 2.54e-01 80 chrX:5400652-5400732 8.40e-01 80 chrX:1117449-1117529 8.95e-02 80 chrX:15007031-15007111 1.92e-01 80 chrV:12797091-12797171 2.87e-01 80 chrIII:13390125-13390205 2.17e-03 48_[+4(4.68e-05)]_24 chrX:645725-645805 2.29e-01 80 chrV:9507087-9507167 7.84e-04 13_[+4(6.71e-05)]_59 chrX:3611349-3611429 2.06e-02 80 chrII:5512584-5512664 1.66e-02 80 chrX:15689395-15689475 2.02e-02 72_[+3(5.05e-05)] chrX:16153889-16153969 3.64e-03 72_[+3(2.51e-05)] chrI:10036048-10036128 1.38e-01 80 chrII:13190523-13190603 7.06e-04 38_[+3(5.05e-05)]_34 chrI:5290823-5290903 8.29e-01 80 chrX:15944354-15944434 1.66e-02 46_[+4(4.68e-05)]_26 chrIII:9638280-9638360 3.87e-02 8_[+5(6.09e-05)]_64 chrII:10918389-10918469 4.02e-03 80 chrII:621326-621406 5.52e-01 80 chrII:9741546-9741626 1.49e-01 80 chrX:14756030-14756110 1.47e-01 80 chrV:4360136-4360216 7.41e-01 80 chrIV:9899441-9899521 1.76e-01 80 chrX:17702734-17702814 1.82e-02 80 chrIV:1740231-1740311 1.83e-03 31_[+3(2.51e-05)]_41 chrIV:9333196-9333276 1.78e-01 80 chrIV:10003789-10003869 2.53e-03 6_[+2(1.87e-05)]_41_[+5(9.37e-05)]_\ 17 chrI:4671907-4671987 1.98e-02 32_[+5(1.79e-05)]_40 chrIV:3613435-3613515 5.57e-01 80 chrIV:1739542-1739622 4.03e-01 80 chrIV:7182916-7182996 6.13e-04 36_[+2(1.87e-05)]_36 chrII:9891978-9892058 2.24e-01 80 chrIV:337487-337567 4.75e-03 37_[+4(4.68e-05)]_35 chrII:12518189-12518269 2.34e-02 40_[+2(4.41e-05)]_32 chrIII:12658749-12658829 4.30e-02 24_[+2(4.41e-05)]_48 chrX:3572650-3572730 3.11e-02 14_[+4(8.12e-05)]_58 chrV:8283104-8283184 6.02e-02 11_[+4(4.68e-05)]_61 chrV:10960708-10960788 2.46e-01 80 chrV:8217796-8217876 1.59e-01 80 chrV:14895801-14895881 5.90e-02 80 chrI:6581322-6581402 5.38e-01 80 chrII:12028041-12028121 2.31e-02 53_[+1(1.76e-05)]_19 chrV:11986282-11986362 5.10e-01 80 chrIV:12991785-12991865 8.64e-01 80 chrII:9622257-9622337 4.44e-03 6_[+4(1.96e-05)]_66 chrIV:4557872-4557952 6.42e-03 38_[+5(1.79e-05)]_34 chrV:7742658-7742738 7.26e-01 80 chrV:123688-123768 7.81e-01 80 chrI:6582660-6582740 1.34e-02 26_[+2(1.87e-05)]_46 chrIII:3621324-3621404 5.03e-01 80 chrIV:4821192-4821272 4.52e-04 30_[+2(1.87e-05)]_24_[+1(1.76e-05)]_\ 10 chrI:6562520-6562600 8.44e-01 80 chrIV:4544438-4544518 9.56e-01 80 chrX:17408967-17409047 2.06e-01 80 chrX:12869469-12869549 1.56e-01 80 chrIV:8261046-8261126 8.10e-02 80 chrIV:8952361-8952441 6.23e-05 10_[+1(2.48e-05)]_30_[+3(2.51e-05)]_\ 24 chrI:9331479-9331559 2.27e-02 80 chrII:7695820-7695900 4.57e-01 80 chrIV:6574535-6574615 5.64e-01 80 chrV:14830962-14831042 2.31e-01 80 chrIV:13453519-13453599 8.40e-01 80 chrV:10968125-10968205 5.76e-02 80 chrX:15599149-15599229 2.12e-02 29_[+4(4.68e-05)]_43 chrIV:5089127-5089207 1.58e-02 80 chrI:7723319-7723399 3.85e-01 80 chrIII:13734039-13734119 2.39e-02 31_[+5(4.28e-05)]_6_[+5(1.79e-05)]_\ 27 chrX:2018356-2018436 3.99e-03 9_[+2(1.87e-05)]_63 chrIV:8113311-8113391 1.51e-02 64_[+1(5.87e-05)]_8 chrII:9620682-9620762 5.48e-04 64_[+4(1.96e-05)]_8 chrX:7291414-7291494 2.01e-03 61_[+4(1.96e-05)]_11 chrI:14931542-14931622 3.87e-01 80 chrV:20499122-20499202 8.84e-01 80 chrV:13164028-13164108 9.95e-01 80 chrII:5429861-5429941 1.01e-01 10_[+1(9.23e-05)]_62 chrII:13973665-13973745 6.67e-02 80 chrI:6572837-6572917 4.40e-02 42_[+3(6.85e-05)]_30 chrI:1914050-1914130 6.01e-02 9_[+5(6.85e-05)]_63 chrIII:9571037-9571117 3.77e-01 80 chrII:8400252-8400332 8.75e-04 8_[+2(1.87e-05)]_64 chrI:6589184-6589264 7.45e-02 80 chrIV:12361782-12361862 2.71e-02 4_[+2(4.41e-05)]_68 chrI:3805821-3805901 2.89e-01 80 chrIV:14456821-14456901 2.16e-01 80 chrIV:9538321-9538401 5.76e-02 80 chrIV:3012527-3012607 4.64e-01 80 chrV:19207111-19207191 1.61e-01 80 chrII:8965010-8965090 2.12e-02 80 chrI:12343572-12343652 1.85e-01 80 chrI:11014339-11014419 1.39e-01 80 chrV:20090873-20090953 1.70e-02 44_[+1(4.49e-05)]_28 chrIII:5427277-5427357 5.74e-02 80 chrI:6585566-6585646 5.48e-01 80 chrII:13297755-13297835 5.20e-01 80 chrIII:3875135-3875215 6.11e-01 80 chrII:11423473-11423553 2.43e-01 18_[+4(8.12e-05)]_12_[+4(8.12e-05)]_\ 34 chrX:12976202-12976282 4.43e-01 80 chrV:4702613-4702693 1.50e-03 [+2(1.87e-05)]_72 chrIV:4394068-4394148 2.44e-01 80 chrIII:8051122-8051202 6.21e-01 80 chrX:381168-381248 5.53e-01 80 chrX:8193354-8193434 3.29e-03 9_[+3(5.05e-05)]_17_[+1(4.49e-05)]_\ 38 chrX:440549-440629 4.46e-03 80 chrII:8429136-8429216 1.74e-02 35_[+1(3.50e-05)]_37 chrI:8529531-8529611 9.53e-03 19_[+1(5.87e-05)]_53 chrV:10435333-10435413 1.92e-02 80 chrX:15508074-15508154 7.73e-02 80 chrI:5287395-5287475 1.09e-03 63_[+3(2.51e-05)]_9 chrII:7237047-7237127 2.70e-01 80 chrI:12572456-12572536 1.42e-02 30_[+1(4.49e-05)]_42 chrIII:11087549-11087629 1.05e-03 14_[+3(2.51e-05)]_6_[+1(2.48e-05)]_\ 44 chrX:11515553-11515633 2.80e-02 80 chrIII:13258936-13259016 6.60e-01 80 chrV:10161065-10161145 4.09e-01 80 chrIV:855651-855731 1.26e-02 5_[+3(6.85e-05)]_67 chrX:823914-823994 7.49e-01 80 chrIII:7770110-7770190 1.54e-02 40_[+5(1.79e-05)]_32 chrX:11370277-11370357 4.91e-03 33_[+4(1.96e-05)]_39 chrI:6584750-6584830 3.59e-01 80 chrX:3772575-3772655 9.36e-01 80 chrIV:7841334-7841414 1.16e-04 28_[+3(5.05e-05)]_44 chrII:9624280-9624360 1.27e-04 54_[+3(6.85e-05)]_18 chrIV:10631091-10631171 1.16e-04 2_[+3(2.51e-05)]_25_[+5(4.28e-05)]_\ 37 chrV:4495364-4495444 6.63e-01 80 chrX:11680844-11680924 2.79e-02 80 chrIV:17387803-17387883 5.73e-03 80 chrII:7023768-7023848 3.02e-02 19_[+4(1.96e-05)]_53 chrII:9740806-9740886 1.94e-01 80 chrX:11710440-11710520 2.05e-02 40_[+5(1.79e-05)]_32 chrX:3501094-3501174 8.95e-01 80 chrI:14101211-14101291 2.84e-02 52_[+5(4.28e-05)]_20 chrIII:13608020-13608100 2.34e-02 37_[+3(2.51e-05)]_35 chrV:6413268-6413348 5.06e-03 66_[+3(2.51e-05)]_6 chrX:11519228-11519308 6.07e-01 80 chrIV:12834069-12834149 3.65e-02 80 chrV:2308414-2308494 3.93e-01 80 chrII:5575071-5575151 3.49e-02 1_[+1(9.23e-05)]_71 chrIII:9331245-9331325 6.94e-02 80 chrV:4491454-4491534 9.11e-03 41_[+2(1.87e-05)]_31 chrX:15779648-15779728 3.56e-02 80 chrI:4650965-4651045 5.25e-02 80 chrX:8421753-8421833 5.55e-02 80 chrIV:7549931-7550011 4.30e-02 80 chrII:13036914-13036994 4.37e-01 80 chrV:13377268-13377348 1.14e-02 22_[+3(2.51e-05)]_50 chrX:12911382-12911462 6.54e-02 46_[+1(4.49e-05)]_26 chrV:10371365-10371445 7.98e-02 80 chrIII:7730560-7730640 8.33e-01 80 chrX:15599963-15600043 6.83e-02 80 chrX:5100913-5100993 8.25e-03 71_[+2(1.87e-05)]_1 chrIII:10466174-10466254 3.68e-01 80 chrV:7744229-7744309 5.49e-03 43_[+2(4.41e-05)]_29 chrV:5329075-5329155 2.74e-01 80 chrX:5780843-5780923 9.78e-03 80 chrX:12982843-12982923 1.28e-01 10_[+4(8.12e-05)]_62 chrIII:13067029-13067109 1.12e-02 80 chrII:9738961-9739041 4.98e-03 37_[+4(8.12e-05)]_35 chrIII:2733721-2733801 3.26e-03 80 chrIII:4467903-4467983 3.95e-02 80 chrII:12518983-12519063 6.37e-03 15_[+1(9.23e-05)]_57 chrV:12952413-12952493 7.17e-02 49_[+1(6.84e-05)]_23 chrX:12001728-12001808 6.50e-01 80 chrIV:5590338-5590418 1.33e-01 80 chrX:15842700-15842780 1.41e-01 80 chrIV:128800-128880 8.64e-01 80 chrIII:9528972-9529052 2.75e-01 80 chrIII:5015270-5015350 1.61e-05 7_[+3(5.05e-05)]_30_[+2(4.41e-05)]_\ 11_[+4(6.71e-05)]_8 chrIV:5134004-5134084 4.22e-03 36_[+5(6.09e-05)]_36 chrII:7864412-7864492 5.37e-03 24_[+5(1.79e-05)]_48 chrI:10429563-10429643 3.77e-01 80 chrI:9386081-9386161 8.78e-01 80 chrIII:600776-600856 3.71e-03 23_[+3(2.51e-05)]_49 chrIV:10858788-10858868 7.06e-03 37_[+5(4.28e-05)]_35 chrIV:1239828-1239908 9.94e-02 80 chrI:6974313-6974393 3.60e-03 80 chrI:6558924-6559004 3.55e-02 80 chrX:11679768-11679848 4.11e-02 43_[+2(4.41e-05)]_29 chrIV:7325882-7325962 8.71e-03 35_[+3(5.05e-05)]_37 chrI:6732584-6732664 3.91e-02 80 chrIII:12325381-12325461 9.14e-03 1_[+1(3.50e-05)]_71 chrX:14970487-14970567 1.51e-01 80 chrX:6932407-6932487 3.85e-01 80 chrV:9928082-9928162 1.87e-01 80 chrIII:11380763-11380843 1.08e-01 80 chrIII:5914908-5914988 1.39e-02 3_[+1(2.48e-05)]_69 chrX:9540604-9540684 6.15e-01 80 chrX:4144555-4144635 5.03e-02 19_[+5(1.79e-05)]_53 chrIV:15929958-15930038 3.50e-04 20_[+1(7.31e-06)]_52 chrI:7355818-7355898 7.70e-02 80 chrII:13955511-13955591 4.04e-01 80 chrX:10679357-10679437 8.15e-01 80 chrIV:6910247-6910327 3.93e-03 80 chrII:14813778-14813858 1.78e-01 80 chrV:11650928-11651008 7.65e-03 50_[+3(5.05e-05)]_22 chrI:1229425-1229505 4.29e-02 80 chrI:5420392-5420472 2.22e-02 39_[+1(1.76e-05)]_33 chrI:15041563-15041643 5.35e-03 45_[+5(4.28e-05)]_27 chrX:5018378-5018458 3.51e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************