******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/jun-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:9132513-9132593 1.0000 80 chrV:14542306-14542386 1.0000 80 chrII:9131662-9131742 1.0000 80 chrIV:3988778-3988858 1.0000 80 chrIII:8519149-8519229 1.0000 80 chrIV:3899983-3900063 1.0000 80 chrII:2378757-2378837 1.0000 80 chrI:10752167-10752247 1.0000 80 chrIII:3809202-3809282 1.0000 80 chrV:6016285-6016365 1.0000 80 chrII:8566852-8566932 1.0000 80 chrII:13780964-13781044 1.0000 80 chrIII:11050703-11050783 1.0000 80 chrX:9446250-9446330 1.0000 80 chrII:915421-915501 1.0000 80 chrV:6213996-6214076 1.0000 80 chrI:7156943-7157023 1.0000 80 chrIV:13919384-13919464 1.0000 80 chrV:6223032-6223112 1.0000 80 chrV:18346253-18346333 1.0000 80 chrV:13268114-13268194 1.0000 80 chrV:8651508-8651588 1.0000 80 chrV:20164703-20164783 1.0000 80 chrX:10480753-10480833 1.0000 80 chrIII:908228-908308 1.0000 80 chrIII:154367-154447 1.0000 80 chrIV:16490141-16490221 1.0000 80 chrV:15497887-15497967 1.0000 80 chrIII:12614710-12614790 1.0000 80 chrX:15736634-15736714 1.0000 80 chrX:10142133-10142213 1.0000 80 chrII:1103827-1103907 1.0000 80 chrII:9501059-9501139 1.0000 80 chrX:11792065-11792145 1.0000 80 chrIV:7189022-7189102 1.0000 80 chrIV:17245353-17245433 1.0000 80 chrIV:14594437-14594517 1.0000 80 chrI:14620916-14620996 1.0000 80 chrIII:10533479-10533559 1.0000 80 chrV:726453-726533 1.0000 80 chrIII:3703574-3703654 1.0000 80 chrII:14811597-14811677 1.0000 80 chrV:6223233-6223313 1.0000 80 chrV:10855565-10855645 1.0000 80 chrIII:12318962-12319042 1.0000 80 chrIV:3612041-3612121 1.0000 80 chrX:4208695-4208775 1.0000 80 chrIII:9929346-9929426 1.0000 80 chrII:5336969-5337049 1.0000 80 chrX:2917945-2918025 1.0000 80 chrIII:4796211-4796291 1.0000 80 chrII:8388358-8388438 1.0000 80 chrX:11464295-11464375 1.0000 80 chrIV:6083751-6083831 1.0000 80 chrV:17659413-17659493 1.0000 80 chrX:1445901-1445981 1.0000 80 chrIV:4014590-4014670 1.0000 80 chrX:7962362-7962442 1.0000 80 chrIII:833072-833152 1.0000 80 chrIV:14624283-14624363 1.0000 80 chrII:11492959-11493039 1.0000 80 chrIV:10697238-10697318 1.0000 80 chrI:7661316-7661396 1.0000 80 chrV:13269493-13269573 1.0000 80 chrIV:7240844-7240924 1.0000 80 chrV:13657558-13657638 1.0000 80 chrX:3235589-3235669 1.0000 80 chrX:12873806-12873886 1.0000 80 chrIV:4024356-4024436 1.0000 80 chrIV:13318892-13318972 1.0000 80 chrI:5025559-5025639 1.0000 80 chrI:9862890-9862970 1.0000 80 chrX:13528713-13528793 1.0000 80 chrI:4773119-4773199 1.0000 80 chrX:13165868-13165948 1.0000 80 chrX:13470419-13470499 1.0000 80 chrV:532192-532272 1.0000 80 chrII:1851893-1851973 1.0000 80 chrX:4526723-4526803 1.0000 80 chrX:6326037-6326117 1.0000 80 chrI:9177325-9177405 1.0000 80 chrX:7181748-7181828 1.0000 80 chrI:7476931-7477011 1.0000 80 chrI:9275349-9275429 1.0000 80 chrIII:6857644-6857724 1.0000 80 chrV:19158845-19158925 1.0000 80 chrIII:13747511-13747591 1.0000 80 chrX:14975796-14975876 1.0000 80 chrX:11515557-11515637 1.0000 80 chrX:6748056-6748136 1.0000 80 chrX:17181431-17181511 1.0000 80 chrII:11150061-11150141 1.0000 80 chrII:5191891-5191971 1.0000 80 chrX:1888577-1888657 1.0000 80 chrI:2421827-2421907 1.0000 80 chrV:12300368-12300448 1.0000 80 chrX:17419864-17419944 1.0000 80 chrIII:8806392-8806472 1.0000 80 chrIII:9956866-9956946 1.0000 80 chrIV:12834470-12834550 1.0000 80 chrIII:4276000-4276080 1.0000 80 chrIV:15049752-15049832 1.0000 80 chrV:1474389-1474469 1.0000 80 chrV:8054355-8054435 1.0000 80 chrV:11799387-11799467 1.0000 80 chrIII:2090887-2090967 1.0000 80 chrIV:8527777-8527857 1.0000 80 chrV:7854707-7854787 1.0000 80 chrII:11153925-11154005 1.0000 80 chrIV:13254008-13254088 1.0000 80 chrX:14558114-14558194 1.0000 80 chrX:1504843-1504923 1.0000 80 chrX:6818197-6818277 1.0000 80 chrV:6614523-6614603 1.0000 80 chrIV:11284235-11284315 1.0000 80 chrV:20729095-20729175 1.0000 80 chrV:10852112-10852192 1.0000 80 chrI:4490550-4490630 1.0000 80 chrX:13144393-13144473 1.0000 80 chrIII:1279341-1279421 1.0000 80 chrIII:12919979-12920059 1.0000 80 chrII:1820093-1820173 1.0000 80 chrIV:292021-292101 1.0000 80 chrIV:3227794-3227874 1.0000 80 chrIII:12931976-12932056 1.0000 80 chrX:1339082-1339162 1.0000 80 chrII:162384-162464 1.0000 80 chrIV:2676439-2676519 1.0000 80 chrII:24605-24685 1.0000 80 chrX:7782590-7782670 1.0000 80 chrIII:10133097-10133177 1.0000 80 chrII:5338426-5338506 1.0000 80 chrIII:11834930-11835010 1.0000 80 chrIV:8530801-8530881 1.0000 80 chrV:3391137-3391217 1.0000 80 chrIV:4020026-4020106 1.0000 80 chrX:4193325-4193405 1.0000 80 chrI:9380259-9380339 1.0000 80 chrIII:6447718-6447798 1.0000 80 chrX:13950850-13950930 1.0000 80 chrII:4999290-4999370 1.0000 80 chrIV:16181007-16181087 1.0000 80 chrI:378796-378876 1.0000 80 chrX:1909539-1909619 1.0000 80 chrI:10105080-10105160 1.0000 80 chrIV:13322601-13322681 1.0000 80 chrV:20162234-20162314 1.0000 80 chrX:13401455-13401535 1.0000 80 chrIV:10469761-10469841 1.0000 80 chrX:4395605-4395685 1.0000 80 chrX:2971692-2971772 1.0000 80 chrIV:3548508-3548588 1.0000 80 chrI:10777406-10777486 1.0000 80 chrX:11710457-11710537 1.0000 80 chrII:3245949-3246029 1.0000 80 chrIII:600648-600728 1.0000 80 chrII:8395075-8395155 1.0000 80 chrV:13658750-13658830 1.0000 80 chrX:727923-728003 1.0000 80 chrIII:7165975-7166055 1.0000 80 chrI:12654768-12654848 1.0000 80 chrIII:4195460-4195540 1.0000 80 chrIII:11922038-11922118 1.0000 80 chrIII:7278652-7278732 1.0000 80 chrX:13917489-13917569 1.0000 80 chrV:16000614-16000694 1.0000 80 chrIII:8326342-8326422 1.0000 80 chrII:8016941-8017021 1.0000 80 chrIV:9197019-9197099 1.0000 80 chrX:11924293-11924373 1.0000 80 chrIII:8425244-8425324 1.0000 80 chrX:12630679-12630759 1.0000 80 chrII:6842835-6842915 1.0000 80 chrIV:6093731-6093811 1.0000 80 chrI:6964513-6964593 1.0000 80 chrV:8936304-8936384 1.0000 80 chrX:2667968-2668048 1.0000 80 chrV:8040766-8040846 1.0000 80 chrII:7809230-7809310 1.0000 80 chrIV:5582445-5582525 1.0000 80 chrX:6808831-6808911 1.0000 80 chrIV:8826522-8826602 1.0000 80 chrIII:11689487-11689567 1.0000 80 chrII:11979836-11979916 1.0000 80 chrIV:5593988-5594068 1.0000 80 chrX:13514552-13514632 1.0000 80 chrX:2971085-2971165 1.0000 80 chrI:5311744-5311824 1.0000 80 chrV:177031-177111 1.0000 80 chrX:6750283-6750363 1.0000 80 chrX:11522237-11522317 1.0000 80 chrIII:12003403-12003483 1.0000 80 chrIII:8797484-8797564 1.0000 80 chrV:6229571-6229651 1.0000 80 chrII:11619255-11619335 1.0000 80 chrX:1492310-1492390 1.0000 80 chrI:7595597-7595677 1.0000 80 chrX:8089620-8089700 1.0000 80 chrV:14849821-14849901 1.0000 80 chrIII:1926575-1926655 1.0000 80 chrII:5330385-5330465 1.0000 80 chrIV:5657222-5657302 1.0000 80 chrX:15607633-15607713 1.0000 80 chrX:14790447-14790527 1.0000 80 chrIII:1681176-1681256 1.0000 80 chrX:2364878-2364958 1.0000 80 chrIII:2172122-2172202 1.0000 80 chrX:16611526-16611606 1.0000 80 chrX:12872465-12872545 1.0000 80 chrX:14813548-14813628 1.0000 80 chrI:9934500-9934580 1.0000 80 chrII:6026847-6026927 1.0000 80 chrIII:10214566-10214646 1.0000 80 chrV:14200254-14200334 1.0000 80 chrII:13954204-13954284 1.0000 80 chrV:11532450-11532530 1.0000 80 chrIII:4015560-4015640 1.0000 80 chrV:6275430-6275510 1.0000 80 chrX:5480210-5480290 1.0000 80 chrII:6926756-6926836 1.0000 80 chrIV:8528533-8528613 1.0000 80 chrII:13976332-13976412 1.0000 80 chrIII:12568349-12568429 1.0000 80 chrX:6743000-6743080 1.0000 80 chrI:1701124-1701204 1.0000 80 chrV:5271603-5271683 1.0000 80 chrI:7490186-7490266 1.0000 80 chrIV:3012538-3012618 1.0000 80 chrI:108599-108679 1.0000 80 chrIV:13388992-13389072 1.0000 80 chrIII:7153995-7154075 1.0000 80 chrX:8231969-8232049 1.0000 80 chrIII:9780774-9780854 1.0000 80 chrIV:10366179-10366259 1.0000 80 chrIV:14611051-14611131 1.0000 80 chrV:19053402-19053482 1.0000 80 chrIV:11522696-11522776 1.0000 80 chrX:382877-382957 1.0000 80 chrIV:15570888-15570968 1.0000 80 chrX:2432688-2432768 1.0000 80 chrX:8477575-8477655 1.0000 80 chrV:731383-731463 1.0000 80 chrIV:7103445-7103525 1.0000 80 chrIV:4026038-4026118 1.0000 80 chrI:1067127-1067207 1.0000 80 chrII:11464572-11464652 1.0000 80 chrIV:3384706-3384786 1.0000 80 chrX:16205980-16206060 1.0000 80 chrV:10040076-10040156 1.0000 80 chrII:2800974-2801054 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_jun-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/jun-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.277 C 0.215 G 0.212 T 0.295 Background letter frequencies (from file dataset with add-one prior applied): A 0.277 C 0.216 G 0.212 T 0.295 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGYBTCTC MEME-1 width = 8 sites = 52 llr = 405 E-value = 2.7e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGYBTCTC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::1:: pos.-specific C 1:63:9:9 probability G :8:5:::: matrix T 9243a:a1 bits 2.2 2.0 1.8 *** 1.6 **** Relative 1.3 ** **** Entropy 1.1 *** **** (11.2 bits) 0.9 *** **** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCGTCTC consensus TC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYBTCTC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:3384706-3384786 5 1.16e-05 CGTC TGCGTCTC CGTCTCATAT chrX:5480210-5480290 35 1.16e-05 ATGGTGAGGA TGCGTCTC TGAATGTGCA chrIII:1926575-1926655 15 1.16e-05 TCGTGCTCTC TGCGTCTC TCGAACCGTC chrII:7809230-7809310 13 1.16e-05 TGCGACACGC TGCGTCTC TATTTCTTCA chrIV:16181007-16181087 29 1.16e-05 CGAGTTTCTC TGCGTCTC TTCAATTTTC chrV:20729095-20729175 44 1.16e-05 TCTTTTTCTC TGCGTCTC TCACGTGCTC chrIII:2090887-2090967 38 1.16e-05 TCTGAGTGTC TGCGTCTC TCACTGCCTC chrV:532192-532272 6 1.16e-05 GTGTC TGCGTCTC TCTTTTCAAT chrIII:3703574-3703654 14 1.16e-05 TTCCATTCTC TGCGTCTC TCTCCTTCTG chrV:15497887-15497967 34 1.16e-05 TCGTATGCTC TGCGTCTC TCCATGTATG chrV:6213996-6214076 27 1.16e-05 TGTCAGTATC TGCGTCTC TTACCACATT chrIII:11050703-11050783 42 1.16e-05 GTGTTCTCTA TGCGTCTC GGCGTCTCCC chrX:8231969-8232049 56 2.75e-05 TGACCCTCTC TGTGTCTC GTCCGCTATT chrII:4999290-4999370 18 2.75e-05 AGTTTTTCTC TGTGTCTC TCATTCTACA chrIII:6447718-6447798 19 2.75e-05 ACAACGAACA TGTGTCTC CCACGAGGGA chrIII:12919979-12920059 46 2.75e-05 ATAGAGTGTC TGTGTCTC TCTCTGTCTT chrIV:5593988-5594068 70 3.94e-05 TTTTGTCTTT TGCCTCTC TTG chrII:6842835-6842915 41 3.94e-05 ACCCGTCTCG TGCCTCTC ATGTTCTTTT chrX:13401455-13401535 1 5.55e-05 . TGCTTCTC GCATCTTTTC chrIV:3899983-3900063 48 5.55e-05 TTATCAGAAT TGCTTCTC CACAAAAATT chrIV:9197019-9197099 28 7.17e-05 CACTCTCTCG TGTCTCTC GTTGCTCACT chrI:10752167-10752247 24 7.17e-05 AGAGtctctc tgtctctc tctctctgtt chrX:14813548-14813628 8 1.02e-04 AGTTACT TGTTTCTC GTGGCTAACG chrIII:11689487-11689567 72 1.02e-04 TCTTCCCGCT TGTTTCTC T chrX:6326037-6326117 9 1.02e-04 CTTCTCAC TGTTTCTC TGTATCCCTT chrIII:12568349-12568429 58 1.19e-04 GTGTGTCTTC TTCGTCTC TTACTTCTCG chrV:14200254-14200334 14 1.19e-04 TCTTCGCATC TTCGTCTC GCACACTCTC chrIV:13388992-13389072 16 1.30e-04 CTGTCATTCT CGTGTCTC CACCGATTCG chrX:6808831-6808911 49 1.30e-04 ATACATGTAT CGTGTCTC TGATGTCAGG chrX:13950850-13950930 1 1.39e-04 . CGCCTCTC TCGCGACACA chrX:14558114-14558194 60 1.77e-04 AATTGTCTTA TGCGTCTT CGCGCCAAGA chrX:15607633-15607713 61 1.93e-04 TCTCTTCCGA TTCCTCTC GTCGTTTCTG chrX:9446250-9446330 65 1.93e-04 CTCTTGTCTC TTCCTCTC GTCTTTTT chrIII:8326342-8326422 27 2.28e-04 AGTTTTCAGC TTCTTCTC CTCGTTCCGC chrII:162384-162464 51 2.28e-04 TCCCCCGTCC TTCTTCTC GTCTTCCAAA chrX:2667968-2668048 19 2.39e-04 CACTGTCTGC CGTCTCTC CACACCGAGC chrIV:7189022-7189102 51 2.61e-04 AGTCGATGTT TGTGTCTT TGAAGAGAAT chrV:10040076-10040156 13 3.15e-04 TCCATCGTTT TGCCTCTT CTCCTTTCGC chrX:6743000-6743080 36 3.15e-04 CTTTCTCTCA TTTCTCTC ACTATTTACC chrX:16611526-16611606 72 3.15e-04 CGCTTGACCC TTTCTCTC T chrV:8936304-8936384 62 3.15e-04 CTCTTTTCTT TGCCTCTT TTTTCCGAGA chrIV:12834470-12834550 66 3.15e-04 CCTCGTTGTC TGCGTAtc tctgctc chrIII:4796211-4796291 20 3.15e-04 TATCACTGTC TGCGTATC TTACTCTTCC chrII:6026847-6026927 11 3.31e-04 ATTTTTAATC CGTTTCTC GGGTTTCCTC chrIII:12931976-12932056 32 3.31e-04 CTCGCTGACG CGTTTCTC GATTTTGCTG chrIV:4024356-4024436 60 3.31e-04 ACGCTTTTTT CGTTTCTC AAGGTTCGGT chrII:13954204-13954284 4 3.96e-04 CTC TTTTTCTC TTGTTCGTTC chrII:14811597-14811677 2 3.96e-04 T TTTTTCTC TGACTTGTTG chrV:726453-726533 54 3.96e-04 TGGGGACAGA TGCTTCTT CCAGTTGAAG chrX:11522237-11522317 19 4.38e-04 GTTCAGTCGA TGTCTCTT GGGTCTTCTC chrI:5311744-5311824 66 4.38e-04 TTCATCATCA TGTGTATC TTGTAAT chrIV:17245353-17245433 19 6.31e-04 TTTTACCTTT TCTGTCTC CATTCACTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYBTCTC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:3384706-3384786 1.2e-05 4_[+1]_68 chrX:5480210-5480290 1.2e-05 34_[+1]_38 chrIII:1926575-1926655 1.2e-05 14_[+1]_58 chrII:7809230-7809310 1.2e-05 12_[+1]_60 chrIV:16181007-16181087 1.2e-05 28_[+1]_44 chrV:20729095-20729175 1.2e-05 43_[+1]_29 chrIII:2090887-2090967 1.2e-05 37_[+1]_35 chrV:532192-532272 1.2e-05 5_[+1]_67 chrIII:3703574-3703654 1.2e-05 13_[+1]_59 chrV:15497887-15497967 1.2e-05 33_[+1]_39 chrV:6213996-6214076 1.2e-05 26_[+1]_46 chrIII:11050703-11050783 1.2e-05 41_[+1]_31 chrX:8231969-8232049 2.8e-05 55_[+1]_17 chrII:4999290-4999370 2.8e-05 17_[+1]_55 chrIII:6447718-6447798 2.8e-05 18_[+1]_54 chrIII:12919979-12920059 2.8e-05 45_[+1]_27 chrIV:5593988-5594068 3.9e-05 69_[+1]_3 chrII:6842835-6842915 3.9e-05 40_[+1]_32 chrX:13401455-13401535 5.6e-05 [+1]_72 chrIV:3899983-3900063 5.6e-05 47_[+1]_25 chrIV:9197019-9197099 7.2e-05 27_[+1]_45 chrI:10752167-10752247 7.2e-05 23_[+1]_49 chrX:14813548-14813628 0.0001 7_[+1]_65 chrIII:11689487-11689567 0.0001 71_[+1]_1 chrX:6326037-6326117 0.0001 8_[+1]_64 chrIII:12568349-12568429 0.00012 57_[+1]_15 chrV:14200254-14200334 0.00012 13_[+1]_59 chrIV:13388992-13389072 0.00013 15_[+1]_57 chrX:6808831-6808911 0.00013 48_[+1]_24 chrX:13950850-13950930 0.00014 [+1]_72 chrX:14558114-14558194 0.00018 59_[+1]_13 chrX:15607633-15607713 0.00019 60_[+1]_12 chrX:9446250-9446330 0.00019 64_[+1]_8 chrIII:8326342-8326422 0.00023 26_[+1]_46 chrII:162384-162464 0.00023 50_[+1]_22 chrX:2667968-2668048 0.00024 18_[+1]_54 chrIV:7189022-7189102 0.00026 50_[+1]_22 chrV:10040076-10040156 0.00031 12_[+1]_60 chrX:6743000-6743080 0.00031 35_[+1]_37 chrX:16611526-16611606 0.00031 71_[+1]_1 chrV:8936304-8936384 0.00031 61_[+1]_11 chrIV:12834470-12834550 0.00031 65_[+1]_7 chrIII:4796211-4796291 0.00031 19_[+1]_53 chrII:6026847-6026927 0.00033 10_[+1]_62 chrIII:12931976-12932056 0.00033 31_[+1]_41 chrIV:4024356-4024436 0.00033 59_[+1]_13 chrII:13954204-13954284 0.0004 3_[+1]_69 chrII:14811597-14811677 0.0004 1_[+1]_71 chrV:726453-726533 0.0004 53_[+1]_19 chrX:11522237-11522317 0.00044 18_[+1]_54 chrI:5311744-5311824 0.00044 65_[+1]_7 chrIV:17245353-17245433 0.00063 18_[+1]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYBTCTC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGYBTCTC width=8 seqs=52 chrIV:3384706-3384786 ( 5) TGCGTCTC 1 chrX:5480210-5480290 ( 35) TGCGTCTC 1 chrIII:1926575-1926655 ( 15) TGCGTCTC 1 chrII:7809230-7809310 ( 13) TGCGTCTC 1 chrIV:16181007-16181087 ( 29) TGCGTCTC 1 chrV:20729095-20729175 ( 44) TGCGTCTC 1 chrIII:2090887-2090967 ( 38) TGCGTCTC 1 chrV:532192-532272 ( 6) TGCGTCTC 1 chrIII:3703574-3703654 ( 14) TGCGTCTC 1 chrV:15497887-15497967 ( 34) TGCGTCTC 1 chrV:6213996-6214076 ( 27) TGCGTCTC 1 chrIII:11050703-11050783 ( 42) TGCGTCTC 1 chrX:8231969-8232049 ( 56) TGTGTCTC 1 chrII:4999290-4999370 ( 18) TGTGTCTC 1 chrIII:6447718-6447798 ( 19) TGTGTCTC 1 chrIII:12919979-12920059 ( 46) TGTGTCTC 1 chrIV:5593988-5594068 ( 70) TGCCTCTC 1 chrII:6842835-6842915 ( 41) TGCCTCTC 1 chrX:13401455-13401535 ( 1) TGCTTCTC 1 chrIV:3899983-3900063 ( 48) TGCTTCTC 1 chrIV:9197019-9197099 ( 28) TGTCTCTC 1 chrI:10752167-10752247 ( 24) TGTCTCTC 1 chrX:14813548-14813628 ( 8) TGTTTCTC 1 chrIII:11689487-11689567 ( 72) TGTTTCTC 1 chrX:6326037-6326117 ( 9) TGTTTCTC 1 chrIII:12568349-12568429 ( 58) TTCGTCTC 1 chrV:14200254-14200334 ( 14) TTCGTCTC 1 chrIV:13388992-13389072 ( 16) CGTGTCTC 1 chrX:6808831-6808911 ( 49) CGTGTCTC 1 chrX:13950850-13950930 ( 1) CGCCTCTC 1 chrX:14558114-14558194 ( 60) TGCGTCTT 1 chrX:15607633-15607713 ( 61) TTCCTCTC 1 chrX:9446250-9446330 ( 65) TTCCTCTC 1 chrIII:8326342-8326422 ( 27) TTCTTCTC 1 chrII:162384-162464 ( 51) TTCTTCTC 1 chrX:2667968-2668048 ( 19) CGTCTCTC 1 chrIV:7189022-7189102 ( 51) TGTGTCTT 1 chrV:10040076-10040156 ( 13) TGCCTCTT 1 chrX:6743000-6743080 ( 36) TTTCTCTC 1 chrX:16611526-16611606 ( 72) TTTCTCTC 1 chrV:8936304-8936384 ( 62) TGCCTCTT 1 chrIV:12834470-12834550 ( 66) TGCGTATC 1 chrIII:4796211-4796291 ( 20) TGCGTATC 1 chrII:6026847-6026927 ( 11) CGTTTCTC 1 chrIII:12931976-12932056 ( 32) CGTTTCTC 1 chrIV:4024356-4024436 ( 60) CGTTTCTC 1 chrII:13954204-13954284 ( 4) TTTTTCTC 1 chrII:14811597-14811677 ( 2) TTTTTCTC 1 chrV:726453-726533 ( 54) TGCTTCTT 1 chrX:11522237-11522317 ( 19) TGTCTCTT 1 chrI:5311744-5311824 ( 66) TGTGTATC 1 chrIV:17245353-17245433 ( 19) TCTGTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYBTCTC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.61772 E= 2.7e-007 -1234 -68 -1234 155 -1234 -348 189 -62 -1234 137 -1234 59 -1234 21 124 -24 -1234 -1234 -1234 176 -226 213 -1234 -1234 -1234 -1234 -1234 176 -1234 204 -1234 -135 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYBTCTC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 2.7e-007 0.000000 0.134615 0.000000 0.865385 0.000000 0.019231 0.788462 0.192308 0.000000 0.557692 0.000000 0.442308 0.000000 0.250000 0.500000 0.250000 0.000000 0.000000 0.000000 1.000000 0.057692 0.942308 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.884615 0.000000 0.115385 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYBTCTC MEME-1 regular expression -------------------------------------------------------------------------------- TG[CT][GCT]TCTC -------------------------------------------------------------------------------- Time 5.50 secs. ******************************************************************************** ******************************************************************************** MOTIF AGACVSAG MEME-2 width = 8 sites = 24 llr = 220 E-value = 1.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGACVSAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:a:4:a: pos.-specific C :3:a26:: probability G :8::44:a matrix T :::::::: bits 2.2 * * 2.0 * * 1.8 * ** ** 1.6 * ** ** Relative 1.3 **** *** Entropy 1.1 **** *** (13.2 bits) 0.9 **** *** 0.7 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGACGCAG consensus C AG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACVSAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:2800974-2801054 32 9.45e-06 AGAGGGTGAG AGACGCAG AGAAGAAGAG chrIV:11522696-11522776 1 9.45e-06 . AGACGCAG ACATTCTCTG chrIII:7153995-7154075 72 9.45e-06 TAGAGACAAG AGACGCAG A chrX:11710457-11710537 2 9.45e-06 G AGACGCAG ACATGCACTT chrIV:3548508-3548588 31 9.45e-06 aaagtgagag agacgcag acaacgagag chrV:12300368-12300448 42 9.45e-06 ACACTATCTA AGACGCAG GTTGTTGAAG chrI:9275349-9275429 18 9.45e-06 GAACCACGAG AGACGCAG ACAAAGAGAC chrI:7156943-7157023 14 9.45e-06 GCCTGTGGGG AGACGCAG ACATCTAGGT chrIV:4020026-4020106 69 2.18e-05 GAGAACACGG AGACACAG ACAG chrIV:6083751-6083831 44 2.18e-05 TTGTACAGAG AGACACAG ACATAGAAAA chrIII:11834930-11835010 9 3.11e-05 agagagag agacggag agatagaACG chrV:16000614-16000694 59 4.07e-05 AAACATGAAG AGACCCAG AGAGTAGTGA chrX:727923-728003 65 4.07e-05 GCGGTGACGA AGACCCAG AGAGCGGA chrIV:4026038-4026118 67 5.28e-05 TCCAAGAGGC AGACAGAG ACCCGG chrIII:12003403-12003483 47 5.28e-05 CCTATTGATA AGACAGAG AAAACAGGTG chrX:13165868-13165948 66 5.28e-05 TGAAAGAAAA AGACAGAG AAGATAC chrI:10752167-10752247 10 5.28e-05 TGTATTGCC AGACAGAG tctctctgtc chrIV:5657222-5657302 30 6.24e-05 GAAACTGTAG ACACGCAG GGTGTACGAG chrII:11619255-11619335 65 7.19e-05 ACAAACTGAG AGACCGAG ACGAAAAA chrX:12630679-12630759 44 8.45e-05 tcagacatac acacacag acaAAAAAAG chrIV:10469761-10469841 11 8.45e-05 CCAGCAGCAC ACACACAG CTAACATTCT chrIV:13919384-13919464 18 1.16e-04 TGCACCCATC ACACAGAG AATCGGTCAA chrX:2667968-2668048 28 1.26e-04 CCGTCTCTCC ACACCGAG CACTCTCTAA chrX:10480753-10480833 13 1.26e-04 GCCATCATGC ACACCGAG CTCGGTGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACVSAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:2800974-2801054 9.4e-06 31_[+2]_41 chrIV:11522696-11522776 9.4e-06 [+2]_72 chrIII:7153995-7154075 9.4e-06 71_[+2]_1 chrX:11710457-11710537 9.4e-06 1_[+2]_71 chrIV:3548508-3548588 9.4e-06 30_[+2]_42 chrV:12300368-12300448 9.4e-06 41_[+2]_31 chrI:9275349-9275429 9.4e-06 17_[+2]_55 chrI:7156943-7157023 9.4e-06 13_[+2]_59 chrIV:4020026-4020106 2.2e-05 68_[+2]_4 chrIV:6083751-6083831 2.2e-05 43_[+2]_29 chrIII:11834930-11835010 3.1e-05 8_[+2]_64 chrV:16000614-16000694 4.1e-05 58_[+2]_14 chrX:727923-728003 4.1e-05 64_[+2]_8 chrIV:4026038-4026118 5.3e-05 66_[+2]_6 chrIII:12003403-12003483 5.3e-05 46_[+2]_26 chrX:13165868-13165948 5.3e-05 65_[+2]_7 chrI:10752167-10752247 5.3e-05 9_[+2]_63 chrIV:5657222-5657302 6.2e-05 29_[+2]_43 chrII:11619255-11619335 7.2e-05 64_[+2]_8 chrX:12630679-12630759 8.4e-05 43_[+2]_29 chrIV:10469761-10469841 8.4e-05 10_[+2]_62 chrIV:13919384-13919464 0.00012 17_[+2]_55 chrX:2667968-2668048 0.00013 27_[+2]_45 chrX:10480753-10480833 0.00013 12_[+2]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACVSAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGACVSAG width=8 seqs=24 chrII:2800974-2801054 ( 32) AGACGCAG 1 chrIV:11522696-11522776 ( 1) AGACGCAG 1 chrIII:7153995-7154075 ( 72) AGACGCAG 1 chrX:11710457-11710537 ( 2) AGACGCAG 1 chrIV:3548508-3548588 ( 31) AGACGCAG 1 chrV:12300368-12300448 ( 42) AGACGCAG 1 chrI:9275349-9275429 ( 18) AGACGCAG 1 chrI:7156943-7157023 ( 14) AGACGCAG 1 chrIV:4020026-4020106 ( 69) AGACACAG 1 chrIV:6083751-6083831 ( 44) AGACACAG 1 chrIII:11834930-11835010 ( 9) AGACGGAG 1 chrV:16000614-16000694 ( 59) AGACCCAG 1 chrX:727923-728003 ( 65) AGACCCAG 1 chrIV:4026038-4026118 ( 67) AGACAGAG 1 chrIII:12003403-12003483 ( 47) AGACAGAG 1 chrX:13165868-13165948 ( 66) AGACAGAG 1 chrI:10752167-10752247 ( 10) AGACAGAG 1 chrIV:5657222-5657302 ( 30) ACACGCAG 1 chrII:11619255-11619335 ( 65) AGACCGAG 1 chrX:12630679-12630759 ( 44) ACACACAG 1 chrIV:10469761-10469841 ( 11) ACACACAG 1 chrIV:13919384-13919464 ( 18) ACACAGAG 1 chrX:2667968-2668048 ( 28) ACACCGAG 1 chrX:10480753-10480833 ( 13) ACACCGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACVSAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0167 E= 1.1e-003 185 -1123 -1123 -1123 -1123 21 182 -1123 185 -1123 -1123 -1123 -1123 221 -1123 -1123 44 -5 97 -1123 -1123 154 82 -1123 185 -1123 -1123 -1123 -1123 -1123 223 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACVSAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.1e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.208333 0.416667 0.000000 0.000000 0.625000 0.375000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACVSAG MEME-2 regular expression -------------------------------------------------------------------------------- A[GC]AC[GAC][CG]AG -------------------------------------------------------------------------------- Time 9.14 secs. ******************************************************************************** ******************************************************************************** MOTIF RSGRGARR MEME-3 width = 8 sites = 47 llr = 362 E-value = 7.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif RSGRGARR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 62:6:a56 pos.-specific C :3:::::: probability G 45a4a:54 matrix T :::::::: bits 2.2 * * 2.0 * * 1.8 * ** 1.6 * ** Relative 1.3 * ** Entropy 1.1 * ****** (11.1 bits) 0.9 * ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGAGAAA consensus GC G GG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSGRGARR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:1681176-1681256 5 1.19e-05 gggt aggagaga gtggcagaga chrIV:5657222-5657302 7 1.19e-05 AAGACG AGGAGAGA TGGCTGAAAC chrIII:6447718-6447798 44 1.19e-05 GGACAAAAAG AGGAGAGA CTACAAATCT chrII:3245949-3246029 14 2.74e-05 TCCGACGAGC AGGAGAAA CAGAACTGAT chrX:4395605-4395685 42 2.74e-05 GATGGACGGG AGGAGAAA GATGGAGAAC chrX:2432688-2432768 27 4.56e-05 AAAGTGAATG AGGAGAGG GAAAAGATAG chrV:6229571-6229651 60 4.56e-05 AGGACGATGG AGGAGAGG TGTCACATGT chrV:19158845-19158925 66 4.56e-05 TGCACTGGGT AGGAGAGG CGCAGAG chrV:18346253-18346333 51 4.56e-05 GAAAGTGATA AGGGGAGA ACTGTAGTGA chrX:16205980-16206060 17 7.85e-05 ATAAAGCGAC AGGGGAAA TTGTCAGGCG chrX:14790447-14790527 69 7.85e-05 GCTGGTCGGT AGGAGAAG AGAG chrII:5336969-5337049 50 7.85e-05 CCGATGGTGG GGGAGAGA GATCGAGAGA chrIV:14594437-14594517 29 7.85e-05 CTGTAGCAAA AGGGGAAA AAGTGATGAT chrX:1909539-1909619 13 9.74e-05 CATTCTTTTT AGGGGAGG GTAGCAAGCG chrV:1474389-1474469 34 9.74e-05 ACTGAAGCCC GGGAGAAA GTGCAAACGG chrX:6750283-6750363 69 1.20e-04 GTGACGAAAT GGGGGAGA ATTT chrX:7782590-7782670 59 1.20e-04 AACACCAAAC GGGAGAGG TAGATGGATA chrX:17181431-17181511 25 1.20e-04 CTTATTTGAA AGGGGAAG GGGCAAAGCG chrV:20164703-20164783 39 1.20e-04 TACTGTTTTA GGGAGAGG AAAATTCGGG chrII:2800974-2801054 73 1.51e-04 TGTGGTGATA ACGAGAGA chrIV:15570888-15570968 28 1.51e-04 tagagatgtg acgagaga GTGTGTAGAA chrV:14849821-14849901 4 1.51e-04 ACC GGGGGAAA CATTCACTCC chrIV:3548508-3548588 42 1.51e-04 gacgcagaca acgagaga ttgagggaAA chrIV:4020026-4020106 14 1.51e-04 gaCGCCTACA ACGAGAGA CCCCTTTCTC chrI:4490550-4490630 73 1.51e-04 GTAGAGGACT GGGGGAAA chrIV:6083751-6083831 63 1.51e-04 CATAGAAAAA ACGAGAGA GTTTTAGACG chrV:177031-177111 21 1.72e-04 AAGCTTCCTC ACGAGAAA AGCGCCAACG chrIV:14611051-14611131 71 1.97e-04 TTGTCAGAGA GGGGGAAG AC chrV:13657558-13657638 14 1.97e-04 AGCACGTGGT GGGGGAAG ACCCCTGTCG chrII:11150061-11150141 8 2.31e-04 TCAATGG ACGAGAAG CTGATGATGA chrIII:12003403-12003483 20 2.66e-04 AGAAACAGAC ACGGGAGG ACACCGGGCC chrIV:9197019-9197099 53 2.66e-04 ACTCGTCTCG GCGAGAAA ACGAACGAAA chrIV:2676439-2676519 33 2.66e-04 GTCAGCGCGT GCGAGAAA CGCGCCAGCA chrIV:15049752-15049832 55 2.66e-04 TCTTAAAACC GCGAGAAA GTGAAAAAAG chrIV:16490141-16490221 66 2.66e-04 TCTTGTGTga aagagaga gagagag chrIII:3809202-3809282 13 2.66e-04 aaaacaaaaa aagagaga taaagagaaa chrI:10752167-10752247 68 3.09e-04 tcttctctct ACGGGAAG GAAGC chrIII:8425244-8425324 29 3.52e-04 TGGCCGGACA GCGAGAAG ACTAGAGCCC chrIII:7278652-7278732 45 4.00e-04 ATAAACAACC AAGAGAAG ACAACTTTCA chrV:7854707-7854787 67 4.00e-04 GTTACGGGTT GAGAGAGA AAACAT chrI:9275349-9275429 54 4.00e-04 CGTGACTGTA AAGGGAAA CGGAATGACG chrIII:4796211-4796291 68 4.00e-04 CAGTCGGGAC AAGGGAAA TACGA chrII:13780964-13781044 50 4.00e-04 CTTCGACTTG AAGGGAAA GGATTTGAGT chrI:10105080-10105160 40 4.32e-04 AAAGTGGTCG AAGGGAGG AGAGTGCACA chrIV:4026038-4026118 25 4.86e-04 ACCGGACGCC GAGAGAAG CTAGCCGAAC chrX:1445901-1445981 54 4.86e-04 TAGGCCCAAA GAGGGAAA AAGAGAAGAG chrI:1067127-1067207 64 5.02e-04 ACGAATTTTG GAGGGAAG TTTGAATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSGRGARR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:1681176-1681256 1.2e-05 4_[+3]_68 chrIV:5657222-5657302 1.2e-05 6_[+3]_66 chrIII:6447718-6447798 1.2e-05 43_[+3]_29 chrII:3245949-3246029 2.7e-05 13_[+3]_59 chrX:4395605-4395685 2.7e-05 41_[+3]_31 chrX:2432688-2432768 4.6e-05 26_[+3]_46 chrV:6229571-6229651 4.6e-05 59_[+3]_13 chrV:19158845-19158925 4.6e-05 65_[+3]_7 chrV:18346253-18346333 4.6e-05 50_[+3]_22 chrX:16205980-16206060 7.9e-05 16_[+3]_56 chrX:14790447-14790527 7.9e-05 68_[+3]_4 chrII:5336969-5337049 7.9e-05 49_[+3]_23 chrIV:14594437-14594517 7.9e-05 28_[+3]_44 chrX:1909539-1909619 9.7e-05 12_[+3]_60 chrV:1474389-1474469 9.7e-05 33_[+3]_39 chrX:6750283-6750363 0.00012 68_[+3]_4 chrX:7782590-7782670 0.00012 58_[+3]_14 chrX:17181431-17181511 0.00012 24_[+3]_48 chrV:20164703-20164783 0.00012 38_[+3]_34 chrII:2800974-2801054 0.00015 72_[+3] chrIV:15570888-15570968 0.00015 27_[+3]_45 chrV:14849821-14849901 0.00015 3_[+3]_69 chrIV:3548508-3548588 0.00015 41_[+3]_31 chrIV:4020026-4020106 0.00015 13_[+3]_59 chrI:4490550-4490630 0.00015 72_[+3] chrIV:6083751-6083831 0.00015 62_[+3]_10 chrV:177031-177111 0.00017 20_[+3]_52 chrIV:14611051-14611131 0.0002 70_[+3]_2 chrV:13657558-13657638 0.0002 13_[+3]_59 chrII:11150061-11150141 0.00023 7_[+3]_65 chrIII:12003403-12003483 0.00027 19_[+3]_53 chrIV:9197019-9197099 0.00027 52_[+3]_20 chrIV:2676439-2676519 0.00027 32_[+3]_40 chrIV:15049752-15049832 0.00027 54_[+3]_18 chrIV:16490141-16490221 0.00027 65_[+3]_7 chrIII:3809202-3809282 0.00027 12_[+3]_60 chrI:10752167-10752247 0.00031 67_[+3]_5 chrIII:8425244-8425324 0.00035 28_[+3]_44 chrIII:7278652-7278732 0.0004 44_[+3]_28 chrV:7854707-7854787 0.0004 66_[+3]_6 chrI:9275349-9275429 0.0004 53_[+3]_19 chrIII:4796211-4796291 0.0004 67_[+3]_5 chrII:13780964-13781044 0.0004 49_[+3]_23 chrI:10105080-10105160 0.00043 39_[+3]_33 chrIV:4026038-4026118 0.00049 24_[+3]_48 chrX:1445901-1445981 0.00049 53_[+3]_19 chrI:1067127-1067207 0.0005 63_[+3]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSGRGARR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RSGRGARR width=8 seqs=47 chrIII:1681176-1681256 ( 5) AGGAGAGA 1 chrIV:5657222-5657302 ( 7) AGGAGAGA 1 chrIII:6447718-6447798 ( 44) AGGAGAGA 1 chrII:3245949-3246029 ( 14) AGGAGAAA 1 chrX:4395605-4395685 ( 42) AGGAGAAA 1 chrX:2432688-2432768 ( 27) AGGAGAGG 1 chrV:6229571-6229651 ( 60) AGGAGAGG 1 chrV:19158845-19158925 ( 66) AGGAGAGG 1 chrV:18346253-18346333 ( 51) AGGGGAGA 1 chrX:16205980-16206060 ( 17) AGGGGAAA 1 chrX:14790447-14790527 ( 69) AGGAGAAG 1 chrII:5336969-5337049 ( 50) GGGAGAGA 1 chrIV:14594437-14594517 ( 29) AGGGGAAA 1 chrX:1909539-1909619 ( 13) AGGGGAGG 1 chrV:1474389-1474469 ( 34) GGGAGAAA 1 chrX:6750283-6750363 ( 69) GGGGGAGA 1 chrX:7782590-7782670 ( 59) GGGAGAGG 1 chrX:17181431-17181511 ( 25) AGGGGAAG 1 chrV:20164703-20164783 ( 39) GGGAGAGG 1 chrII:2800974-2801054 ( 73) ACGAGAGA 1 chrIV:15570888-15570968 ( 28) ACGAGAGA 1 chrV:14849821-14849901 ( 4) GGGGGAAA 1 chrIV:3548508-3548588 ( 42) ACGAGAGA 1 chrIV:4020026-4020106 ( 14) ACGAGAGA 1 chrI:4490550-4490630 ( 73) GGGGGAAA 1 chrIV:6083751-6083831 ( 63) ACGAGAGA 1 chrV:177031-177111 ( 21) ACGAGAAA 1 chrIV:14611051-14611131 ( 71) GGGGGAAG 1 chrV:13657558-13657638 ( 14) GGGGGAAG 1 chrII:11150061-11150141 ( 8) ACGAGAAG 1 chrIII:12003403-12003483 ( 20) ACGGGAGG 1 chrIV:9197019-9197099 ( 53) GCGAGAAA 1 chrIV:2676439-2676519 ( 33) GCGAGAAA 1 chrIV:15049752-15049832 ( 55) GCGAGAAA 1 chrIV:16490141-16490221 ( 66) AAGAGAGA 1 chrIII:3809202-3809282 ( 13) AAGAGAGA 1 chrI:10752167-10752247 ( 68) ACGGGAAG 1 chrIII:8425244-8425324 ( 29) GCGAGAAG 1 chrIII:7278652-7278732 ( 45) AAGAGAAG 1 chrV:7854707-7854787 ( 67) GAGAGAGA 1 chrI:9275349-9275429 ( 54) AAGGGAAA 1 chrIII:4796211-4796291 ( 68) AAGGGAAA 1 chrII:13780964-13781044 ( 50) AAGGGAAA 1 chrI:10105080-10105160 ( 40) AAGGGAGG 1 chrIV:4026038-4026118 ( 25) GAGAGAAG 1 chrX:1445901-1445981 ( 54) GAGGGAAA 1 chrI:1067127-1067207 ( 64) GAGGGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSGRGARR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1725 E= 7.0e+000 120 -1220 77 -1220 -24 36 120 -1220 -1220 -1220 224 -1220 115 -1220 85 -1220 -1220 -1220 224 -1220 185 -1220 -1220 -1220 94 -1220 114 -1220 115 -1220 85 -1220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSGRGARR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 7.0e+000 0.638298 0.000000 0.361702 0.000000 0.234043 0.276596 0.489362 0.000000 0.000000 0.000000 1.000000 0.000000 0.617021 0.000000 0.382979 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.531915 0.000000 0.468085 0.000000 0.617021 0.000000 0.382979 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSGRGARR MEME-3 regular expression -------------------------------------------------------------------------------- [AG][GCA]G[AG]GA[AG][AG] -------------------------------------------------------------------------------- Time 13.12 secs. ******************************************************************************** ******************************************************************************** MOTIF CACTCTCT MEME-4 width = 8 sites = 17 llr = 161 E-value = 2.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACTCTCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a::2::: pos.-specific C a:9:7:91 probability G ::::1:1: matrix T ::1a:a:9 bits 2.2 * 2.0 * 1.8 **** ** 1.6 **** ** Relative 1.3 **** *** Entropy 1.1 **** *** (13.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACTCTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTCTCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:14200254-14200334 25 1.55e-05 TCGTCTCGCA CACTCTCT CGCCCATCCA chrII:7809230-7809310 32 1.55e-05 ATTTCTTCAG CACTCTCT CTGTTCTTGG chrX:2667968-2668048 36 1.55e-05 CCACACCGAG CACTCTCT AATTTTCCCT chrIV:9197019-9197099 18 1.55e-05 AAACTGTCTA CACTCTCT CGTGTCTCTC chrIV:16181007-16181087 47 1.55e-05 TTCAATTTTC CACTCTCT CTCCTGTTCT chrI:9380259-9380339 2 1.55e-05 T CACTCTCT CTTCATCTCT chrIV:3612041-3612121 3 1.55e-05 CC CACTCTCT CTTACCAGCT chrV:6213996-6214076 57 1.55e-05 GTGAAAGTCC CACTCTCT CACACCGCCT chrIV:13322601-13322681 10 3.53e-05 AAATCTCAA CACTATCT CACAAGGGCA chrX:13950850-13950930 17 3.53e-05 TCTCGCGACA CACTATCT CTGCCGTCTC chrV:12300368-12300448 33 3.53e-05 CGTCGTAAGA CACTATCT AAGACGCAGG chrI:12654768-12654848 40 4.67e-05 GTGACACGCC CACTCTCC TGGTGCAGCT chrX:13528713-13528793 60 4.67e-05 GTTCGATGGT CACTCTCC GGGGTTTTCC chrV:20729095-20729175 29 6.19e-05 CCATTGTGAA CACTGTCT TTTTCTCTGC chrX:17419864-17419944 18 6.19e-05 TTCTCTCTGA CACTGTCT TCAAAGAGCG chrI:5025559-5025639 73 7.71e-05 tttcttCCCG CACTCTGT chrIV:11522696-11522776 10 9.82e-05 AGACGCAGA CATTCTCT GCACAAATTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTCTCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:14200254-14200334 1.5e-05 24_[+4]_48 chrII:7809230-7809310 1.5e-05 31_[+4]_41 chrX:2667968-2668048 1.5e-05 35_[+4]_37 chrIV:9197019-9197099 1.5e-05 17_[+4]_55 chrIV:16181007-16181087 1.5e-05 46_[+4]_26 chrI:9380259-9380339 1.5e-05 1_[+4]_71 chrIV:3612041-3612121 1.5e-05 2_[+4]_70 chrV:6213996-6214076 1.5e-05 56_[+4]_16 chrIV:13322601-13322681 3.5e-05 9_[+4]_63 chrX:13950850-13950930 3.5e-05 16_[+4]_56 chrV:12300368-12300448 3.5e-05 32_[+4]_40 chrI:12654768-12654848 4.7e-05 39_[+4]_33 chrX:13528713-13528793 4.7e-05 59_[+4]_13 chrV:20729095-20729175 6.2e-05 28_[+4]_44 chrX:17419864-17419944 6.2e-05 17_[+4]_55 chrI:5025559-5025639 7.7e-05 72_[+4] chrIV:11522696-11522776 9.8e-05 9_[+4]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTCTCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACTCTCT width=8 seqs=17 chrV:14200254-14200334 ( 25) CACTCTCT 1 chrII:7809230-7809310 ( 32) CACTCTCT 1 chrX:2667968-2668048 ( 36) CACTCTCT 1 chrIV:9197019-9197099 ( 18) CACTCTCT 1 chrIV:16181007-16181087 ( 47) CACTCTCT 1 chrI:9380259-9380339 ( 2) CACTCTCT 1 chrIV:3612041-3612121 ( 3) CACTCTCT 1 chrV:6213996-6214076 ( 57) CACTCTCT 1 chrIV:13322601-13322681 ( 10) CACTATCT 1 chrX:13950850-13950930 ( 17) CACTATCT 1 chrV:12300368-12300448 ( 33) CACTATCT 1 chrI:12654768-12654848 ( 40) CACTCTCC 1 chrX:13528713-13528793 ( 60) CACTCTCC 1 chrV:20729095-20729175 ( 29) CACTGTCT 1 chrX:17419864-17419944 ( 18) CACTGTCT 1 chrI:5025559-5025639 ( 73) CACTCTGT 1 chrIV:11522696-11522776 ( 10) CATTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTCTCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8621 E= 2.0e+002 -1073 221 -1073 -1073 185 -1073 -1073 -1073 -1073 213 -1073 -232 -1073 -1073 -1073 176 -65 171 -85 -1073 -1073 -1073 -1073 176 -1073 213 -185 -1073 -1073 -87 -1073 158 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTCTCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.0e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.941176 0.000000 0.058824 0.000000 0.000000 0.000000 1.000000 0.176471 0.705882 0.117647 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.941176 0.058824 0.000000 0.000000 0.117647 0.000000 0.882353 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTCTCT MEME-4 regular expression -------------------------------------------------------------------------------- CACTCTCT -------------------------------------------------------------------------------- Time 16.68 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCAGGG MEME-5 width = 8 sites = 7 llr = 75 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCAGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::37::: pos.-specific C :a:7:::: probability G a:a:1aaa matrix T ::::1::: bits 2.2 *** *** 2.0 *** *** 1.8 *** *** 1.6 *** *** Relative 1.3 **** *** Entropy 1.1 **** *** (15.4 bits) 0.9 **** *** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCAGGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13514552-13514632 6 5.53e-06 TTATC GCGCAGGG ATATTGAAAT chrX:4395605-4395685 10 5.53e-06 AGGAGACAA GCGCAGGG AGAACTGGTG chrX:4208695-4208775 44 5.53e-06 AAGTCTCATT GCGCAGGG ACACCCTTTC chrX:1492310-1492390 31 1.26e-05 AATTCATATC GCGAAGGG TGCATATATC chrX:7181748-7181828 15 1.26e-05 ACCCAGAAAA GCGAAGGG TATAGAACAG chrV:18346253-18346333 18 1.69e-05 AATGCGGAAC GCGCGGGG GCTAGTGATA chrIII:7278652-7278732 13 2.28e-05 AAAATGTCTG GCGCTGGG AGAGTATGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13514552-13514632 5.5e-06 5_[+5]_67 chrX:4395605-4395685 5.5e-06 9_[+5]_63 chrX:4208695-4208775 5.5e-06 43_[+5]_29 chrX:1492310-1492390 1.3e-05 30_[+5]_42 chrX:7181748-7181828 1.3e-05 14_[+5]_58 chrV:18346253-18346333 1.7e-05 17_[+5]_55 chrIII:7278652-7278732 2.3e-05 12_[+5]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCAGGG width=8 seqs=7 chrX:13514552-13514632 ( 6) GCGCAGGG 1 chrX:4395605-4395685 ( 10) GCGCAGGG 1 chrX:4208695-4208775 ( 44) GCGCAGGG 1 chrX:1492310-1492390 ( 31) GCGAAGGG 1 chrX:7181748-7181828 ( 15) GCGAAGGG 1 chrV:18346253-18346333 ( 18) GCGCGGGG 1 chrIII:7278652-7278732 ( 13) GCGCTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1915 E= 1.5e+004 -945 -945 223 -945 -945 221 -945 -945 -945 -945 223 -945 4 173 -945 -945 136 -945 -57 -104 -945 -945 223 -945 -945 -945 223 -945 -945 -945 223 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.5e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.714286 0.000000 0.142857 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGGG MEME-5 regular expression -------------------------------------------------------------------------------- GCG[CA]AGGG -------------------------------------------------------------------------------- Time 20.18 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:9132513-9132593 9.61e-01 80 chrV:14542306-14542386 3.22e-01 80 chrII:9131662-9131742 9.96e-01 80 chrIV:3988778-3988858 4.88e-01 80 chrIII:8519149-8519229 9.70e-01 80 chrIV:3899983-3900063 1.96e-01 47_[+1(5.55e-05)]_25 chrII:2378757-2378837 2.43e-01 80 chrI:10752167-10752247 3.23e-05 9_[+2(5.28e-05)]_6_[+1(7.17e-05)]_\ 49 chrIII:3809202-3809282 6.31e-02 80 chrV:6016285-6016365 3.16e-01 80 chrII:8566852-8566932 5.51e-01 80 chrII:13780964-13781044 1.32e-01 80 chrIII:11050703-11050783 1.71e-02 41_[+1(1.16e-05)]_31 chrX:9446250-9446330 2.68e-01 80 chrII:915421-915501 9.97e-01 80 chrV:6213996-6214076 7.79e-04 26_[+1(1.16e-05)]_22_[+4(1.55e-05)]_\ 16 chrI:7156943-7157023 8.30e-03 13_[+2(9.45e-06)]_59 chrIV:13919384-13919464 3.30e-01 80 chrV:6223032-6223112 1.65e-01 80 chrV:18346253-18346333 3.81e-03 17_[+5(1.69e-05)]_25_[+3(4.56e-05)]_\ 22 chrV:13268114-13268194 7.93e-01 80 chrV:8651508-8651588 1.54e-01 80 chrV:20164703-20164783 1.58e-02 80 chrX:10480753-10480833 2.07e-02 80 chrIII:908228-908308 7.61e-01 80 chrIII:154367-154447 9.98e-01 80 chrIV:16490141-16490221 1.86e-02 80 chrV:15497887-15497967 2.24e-02 33_[+1(1.16e-05)]_18_[+1(1.16e-05)]_\ 13 chrIII:12614710-12614790 9.26e-01 80 chrX:15736634-15736714 2.82e-01 80 chrX:10142133-10142213 1.26e-01 80 chrII:1103827-1103907 8.15e-01 80 chrII:9501059-9501139 2.86e-01 80 chrX:11792065-11792145 2.87e-01 80 chrIV:7189022-7189102 5.57e-02 80 chrIV:17245353-17245433 3.60e-01 80 chrIV:14594437-14594517 1.97e-01 28_[+3(7.85e-05)]_44 chrI:14620916-14620996 9.01e-01 80 chrIII:10533479-10533559 2.96e-01 80 chrV:726453-726533 5.25e-03 39_[+5(3.58e-05)]_33 chrIII:3703574-3703654 5.63e-03 13_[+1(1.16e-05)]_59 chrII:14811597-14811677 4.41e-01 80 chrV:6223233-6223313 8.57e-01 80 chrV:10855565-10855645 3.04e-01 80 chrIII:12318962-12319042 5.08e-01 80 chrIV:3612041-3612121 2.85e-03 2_[+4(1.55e-05)]_70 chrX:4208695-4208775 3.88e-02 43_[+5(5.53e-06)]_29 chrIII:9929346-9929426 6.12e-01 80 chrII:5336969-5337049 2.50e-02 49_[+3(7.85e-05)]_23 chrX:2917945-2918025 2.32e-01 80 chrIII:4796211-4796291 1.57e-03 12_[+4(6.19e-05)]_60 chrII:8388358-8388438 4.32e-01 80 chrX:11464295-11464375 5.37e-01 80 chrIV:6083751-6083831 4.14e-03 43_[+2(2.18e-05)]_29 chrV:17659413-17659493 1.18e-01 80 chrX:1445901-1445981 4.04e-02 80 chrIV:4014590-4014670 3.26e-01 80 chrX:7962362-7962442 3.74e-01 80 chrIII:833072-833152 2.06e-01 80 chrIV:14624283-14624363 9.31e-01 80 chrII:11492959-11493039 8.94e-01 80 chrIV:10697238-10697318 4.85e-01 80 chrI:7661316-7661396 6.12e-01 80 chrV:13269493-13269573 3.48e-01 80 chrIV:7240844-7240924 8.92e-01 80 chrV:13657558-13657638 1.74e-01 80 chrX:3235589-3235669 7.07e-01 80 chrX:12873806-12873886 6.92e-01 80 chrIV:4024356-4024436 4.49e-01 80 chrIV:13318892-13318972 9.54e-01 80 chrI:5025559-5025639 7.91e-02 72_[+4(7.71e-05)] chrI:9862890-9862970 9.34e-01 80 chrX:13528713-13528793 5.46e-02 59_[+4(4.67e-05)]_13 chrI:4773119-4773199 7.89e-01 80 chrX:13165868-13165948 2.19e-02 65_[+2(5.28e-05)]_7 chrX:13470419-13470499 3.15e-01 80 chrV:532192-532272 7.03e-02 5_[+1(1.16e-05)]_67 chrII:1851893-1851973 7.16e-01 80 chrX:4526723-4526803 9.47e-01 80 chrX:6326037-6326117 1.25e-01 80 chrI:9177325-9177405 7.59e-01 80 chrX:7181748-7181828 1.45e-02 14_[+5(1.26e-05)]_58 chrI:7476931-7477011 7.70e-01 80 chrI:9275349-9275429 2.47e-03 17_[+2(9.45e-06)]_55 chrIII:6857644-6857724 3.42e-01 80 chrV:19158845-19158925 3.41e-04 65_[+3(4.56e-05)]_7 chrIII:13747511-13747591 5.80e-01 80 chrX:14975796-14975876 4.30e-01 80 chrX:11515557-11515637 4.54e-01 80 chrX:6748056-6748136 7.93e-01 80 chrX:17181431-17181511 1.61e-02 80 chrII:11150061-11150141 2.13e-01 80 chrII:5191891-5191971 5.99e-01 80 chrX:1888577-1888657 1.10e-01 80 chrI:2421827-2421907 9.91e-01 80 chrV:12300368-12300448 3.92e-04 32_[+4(3.53e-05)]_1_[+2(9.45e-06)]_\ 31 chrX:17419864-17419944 8.03e-03 17_[+4(6.19e-05)]_55 chrIII:8806392-8806472 8.57e-01 80 chrIII:9956866-9956946 6.40e-01 80 chrIV:12834470-12834550 2.30e-01 80 chrIII:4276000-4276080 3.78e-01 80 chrIV:15049752-15049832 4.01e-01 80 chrV:1474389-1474469 1.46e-02 33_[+3(9.74e-05)]_39 chrV:8054355-8054435 4.94e-01 80 chrV:11799387-11799467 6.57e-01 80 chrIII:2090887-2090967 2.10e-02 37_[+1(1.16e-05)]_4_[+1(3.94e-05)]_\ 23 chrIV:8527777-8527857 4.71e-02 80 chrV:7854707-7854787 3.62e-01 80 chrII:11153925-11154005 2.30e-01 80 chrIV:13254008-13254088 9.42e-01 80 chrX:14558114-14558194 2.33e-01 80 chrX:1504843-1504923 7.72e-01 80 chrX:6818197-6818277 6.47e-01 80 chrV:6614523-6614603 8.37e-02 80 chrIV:11284235-11284315 7.58e-02 80 chrV:20729095-20729175 4.96e-03 28_[+4(6.19e-05)]_7_[+1(1.16e-05)]_\ 29 chrV:10852112-10852192 9.53e-01 80 chrI:4490550-4490630 1.30e-01 80 chrX:13144393-13144473 1.90e-02 80 chrIII:1279341-1279421 4.47e-01 80 chrIII:12919979-12920059 2.01e-03 45_[+1(2.75e-05)]_27 chrII:1820093-1820173 7.66e-01 80 chrIV:292021-292101 8.80e-01 80 chrIV:3227794-3227874 3.77e-01 80 chrIII:12931976-12932056 2.39e-01 80 chrX:1339082-1339162 4.13e-01 80 chrII:162384-162464 4.84e-01 80 chrIV:2676439-2676519 2.41e-01 80 chrII:24605-24685 4.82e-01 80 chrX:7782590-7782670 6.64e-02 80 chrIII:10133097-10133177 2.21e-01 80 chrII:5338426-5338506 7.92e-01 80 chrIII:11834930-11835010 2.08e-03 8_[+2(3.11e-05)]_64 chrIV:8530801-8530881 4.82e-01 80 chrV:3391137-3391217 3.22e-02 80 chrIV:4020026-4020106 4.57e-04 68_[+2(2.18e-05)]_4 chrX:4193325-4193405 5.03e-01 80 chrI:9380259-9380339 1.29e-02 1_[+4(1.55e-05)]_71 chrIII:6447718-6447798 1.06e-03 18_[+1(2.75e-05)]_17_[+3(1.19e-05)]_\ 29 chrX:13950850-13950930 7.40e-03 16_[+4(3.53e-05)]_56 chrII:4999290-4999370 1.43e-02 17_[+1(2.75e-05)]_55 chrIV:16181007-16181087 1.58e-03 28_[+1(1.16e-05)]_10_[+4(1.55e-05)]_\ 26 chrI:378796-378876 4.17e-01 80 chrX:1909539-1909619 2.55e-02 12_[+3(9.74e-05)]_60 chrI:10105080-10105160 6.96e-02 80 chrIV:13322601-13322681 5.16e-03 9_[+4(3.53e-05)]_63 chrV:20162234-20162314 9.75e-01 80 chrX:13401455-13401535 7.06e-02 [+1(5.55e-05)]_72 chrIV:10469761-10469841 2.44e-02 10_[+2(8.45e-05)]_62 chrX:4395605-4395685 2.05e-04 9_[+5(5.53e-06)]_24_[+3(2.74e-05)]_\ 31 chrX:2971692-2971772 6.34e-01 80 chrIV:3548508-3548588 4.63e-03 30_[+2(9.45e-06)]_42 chrI:10777406-10777486 8.05e-02 80 chrX:11710457-11710537 8.73e-03 1_[+2(9.45e-06)]_71 chrII:3245949-3246029 4.44e-03 13_[+3(2.74e-05)]_59 chrIII:600648-600728 9.73e-01 80 chrII:8395075-8395155 9.38e-01 80 chrV:13658750-13658830 8.14e-01 80 chrX:727923-728003 1.06e-01 64_[+2(4.07e-05)]_8 chrIII:7165975-7166055 7.57e-01 80 chrI:12654768-12654848 9.86e-02 39_[+4(4.67e-05)]_33 chrIII:4195460-4195540 2.86e-01 80 chrIII:11922038-11922118 9.49e-01 80 chrIII:7278652-7278732 1.74e-02 12_[+5(2.28e-05)]_60 chrX:13917489-13917569 1.20e-01 80 chrV:16000614-16000694 3.56e-02 58_[+2(4.07e-05)]_14 chrIII:8326342-8326422 4.21e-01 80 chrII:8016941-8017021 9.55e-01 80 chrIV:9197019-9197099 3.92e-05 17_[+4(1.55e-05)]_2_[+1(7.17e-05)]_\ 45 chrX:11924293-11924373 7.38e-02 80 chrIII:8425244-8425324 6.60e-02 80 chrX:12630679-12630759 7.32e-02 43_[+2(8.45e-05)]_29 chrII:6842835-6842915 2.01e-01 40_[+1(3.94e-05)]_32 chrIV:6093731-6093811 4.98e-01 80 chrI:6964513-6964593 2.67e-01 80 chrV:8936304-8936384 8.06e-02 80 chrX:2667968-2668048 4.80e-04 8_[+4(6.19e-05)]_19_[+4(1.55e-05)]_\ 37 chrV:8040766-8040846 5.78e-01 80 chrII:7809230-7809310 3.02e-05 12_[+1(1.16e-05)]_11_[+4(1.55e-05)]_\ 41 chrIV:5582445-5582525 9.07e-01 80 chrX:6808831-6808911 3.53e-01 80 chrIV:8826522-8826602 7.73e-01 80 chrIII:11689487-11689567 2.22e-01 80 chrII:11979836-11979916 4.33e-01 80 chrIV:5593988-5594068 4.80e-02 69_[+1(3.94e-05)]_3 chrX:13514552-13514632 1.86e-03 5_[+5(5.53e-06)]_67 chrX:2971085-2971165 1.34e-01 80 chrI:5311744-5311824 4.10e-02 80 chrV:177031-177111 1.10e-02 80 chrX:6750283-6750363 2.39e-01 80 chrX:11522237-11522317 7.16e-02 80 chrIII:12003403-12003483 2.24e-02 46_[+2(5.28e-05)]_26 chrIII:8797484-8797564 1.20e-01 80 chrV:6229571-6229651 3.13e-02 59_[+3(4.56e-05)]_13 chrII:11619255-11619335 3.06e-02 64_[+2(7.19e-05)]_8 chrX:1492310-1492390 1.49e-02 30_[+5(1.26e-05)]_42 chrI:7595597-7595677 6.94e-01 80 chrX:8089620-8089700 1.76e-01 80 chrV:14849821-14849901 8.61e-02 80 chrIII:1926575-1926655 5.89e-02 14_[+1(1.16e-05)]_58 chrII:5330385-5330465 4.12e-01 80 chrIV:5657222-5657302 1.82e-04 6_[+3(1.19e-05)]_15_[+2(6.24e-05)]_\ 43 chrX:15607633-15607713 1.09e-01 80 chrX:14790447-14790527 9.36e-02 68_[+3(7.85e-05)]_4 chrIII:1681176-1681256 1.49e-02 4_[+3(1.19e-05)]_68 chrX:2364878-2364958 9.98e-01 80 chrIII:2172122-2172202 8.54e-02 80 chrX:16611526-16611606 1.30e-02 80 chrX:12872465-12872545 2.98e-02 80 chrX:14813548-14813628 3.86e-01 80 chrI:9934500-9934580 3.47e-01 80 chrII:6026847-6026927 4.62e-01 80 chrIII:10214566-10214646 5.12e-01 80 chrV:14200254-14200334 6.51e-03 24_[+4(1.55e-05)]_48 chrII:13954204-13954284 5.84e-01 80 chrV:11532450-11532530 7.80e-02 37_[+4(9.82e-05)]_10_[+4(3.53e-05)]_\ 17 chrIII:4015560-4015640 4.19e-01 80 chrV:6275430-6275510 2.70e-01 80 chrX:5480210-5480290 1.13e-03 34_[+1(1.16e-05)]_38 chrII:6926756-6926836 3.95e-02 80 chrIV:8528533-8528613 2.70e-01 80 chrII:13976332-13976412 1.47e-01 80 chrIII:12568349-12568429 9.91e-02 80 chrX:6743000-6743080 2.48e-01 80 chrI:1701124-1701204 8.29e-01 80 chrV:5271603-5271683 6.43e-02 80 chrI:7490186-7490266 3.78e-01 80 chrIV:3012538-3012618 9.62e-01 80 chrI:108599-108679 9.22e-01 80 chrIV:13388992-13389072 1.68e-01 80 chrIII:7153995-7154075 9.13e-03 71_[+2(9.45e-06)]_1 chrX:8231969-8232049 2.38e-03 55_[+1(2.75e-05)]_17 chrIII:9780774-9780854 6.29e-01 80 chrIV:10366179-10366259 7.70e-01 80 chrIV:14611051-14611131 8.97e-03 80 chrV:19053402-19053482 8.43e-01 80 chrIV:11522696-11522776 1.57e-03 [+2(9.45e-06)]_1_[+4(9.82e-05)]_63 chrX:382877-382957 3.95e-02 80 chrIV:15570888-15570968 7.66e-02 80 chrX:2432688-2432768 1.83e-02 26_[+3(4.56e-05)]_46 chrX:8477575-8477655 4.79e-02 80 chrV:731383-731463 6.00e-01 80 chrIV:7103445-7103525 6.34e-01 80 chrIV:4026038-4026118 1.44e-03 66_[+2(5.28e-05)]_6 chrI:1067127-1067207 1.99e-01 80 chrII:11464572-11464652 4.18e-01 80 chrIV:3384706-3384786 9.82e-04 4_[+1(1.16e-05)]_34_[+1(1.16e-05)]_\ 26 chrX:16205980-16206060 3.18e-02 16_[+3(7.85e-05)]_56 chrV:10040076-10040156 5.24e-01 80 chrII:2800974-2801054 2.16e-03 31_[+2(9.45e-06)]_8_[+2(3.11e-05)]_\ 25 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c26n02.farnam.hpc.yale.internal ********************************************************************************