******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/irx-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:9546401-9546481 1.0000 80 chrII:14892656-14892736 1.0000 80 chrI:9555139-9555219 1.0000 80 chrII:14903774-14903854 1.0000 80 chrI:9548847-9548927 1.0000 80 chrI:9539448-9539528 1.0000 80 chrI:9541226-9541306 1.0000 80 chrI:9551344-9551424 1.0000 80 chrI:9545577-9545657 1.0000 80 chrV:12300966-12301046 1.0000 80 chrI:10099320-10099400 1.0000 80 chrI:9553509-9553589 1.0000 80 chrI:3754625-3754705 1.0000 80 chrIV:8040802-8040882 1.0000 80 chrII:763159-763239 1.0000 80 chrV:8661431-8661511 1.0000 80 chrI:9539650-9539730 1.0000 80 chrIV:13695848-13695928 1.0000 80 chrX:13745761-13745841 1.0000 80 chrX:17424437-17424517 1.0000 80 chrII:232430-232510 1.0000 80 chrI:11062107-11062187 1.0000 80 chrX:9848781-9848861 1.0000 80 chrV:4508294-4508374 1.0000 80 chrII:1402329-1402409 1.0000 80 chrV:10441272-10441352 1.0000 80 chrII:484535-484615 1.0000 80 chrX:17427907-17427987 1.0000 80 chrX:2802887-2802967 1.0000 80 chrX:12008083-12008163 1.0000 80 chrIII:7858603-7858683 1.0000 80 chrIV:13682906-13682986 1.0000 80 chrV:265226-265306 1.0000 80 chrIV:5188216-5188296 1.0000 80 chrIII:12673518-12673598 1.0000 80 chrIV:11592933-11593013 1.0000 80 chrIV:6369648-6369728 1.0000 80 chrI:10751754-10751834 1.0000 80 chrV:18710166-18710246 1.0000 80 chrX:9403779-9403859 1.0000 80 chrI:5400286-5400366 1.0000 80 chrII:10714379-10714459 1.0000 80 chrX:14487485-14487565 1.0000 80 chrII:14891583-14891663 1.0000 80 chrIII:5190367-5190447 1.0000 80 chrV:156520-156600 1.0000 80 chrIV:13719053-13719133 1.0000 80 chrX:12025158-12025238 1.0000 80 chrX:13113572-13113652 1.0000 80 chrV:8774046-8774126 1.0000 80 chrX:14500477-14500557 1.0000 80 chrX:16777049-16777129 1.0000 80 chrX:3819849-3819929 1.0000 80 chrIII:1540287-1540367 1.0000 80 chrX:13539862-13539942 1.0000 80 chrIV:1623899-1623979 1.0000 80 chrI:7759146-7759226 1.0000 80 chrIII:7554987-7555067 1.0000 80 chrII:14569530-14569610 1.0000 80 chrIV:9790887-9790967 1.0000 80 chrV:20493683-20493763 1.0000 80 chrV:18718227-18718307 1.0000 80 chrV:19666488-19666568 1.0000 80 chrV:13409230-13409310 1.0000 80 chrII:5511890-5511970 1.0000 80 chrII:14043070-14043150 1.0000 80 chrIV:13721126-13721206 1.0000 80 chrII:2687091-2687171 1.0000 80 chrX:6275423-6275503 1.0000 80 chrI:323622-323702 1.0000 80 chrX:15327347-15327427 1.0000 80 chrII:3956893-3956973 1.0000 80 chrV:12599259-12599339 1.0000 80 chrIV:8824514-8824594 1.0000 80 chrIV:5160332-5160412 1.0000 80 chrI:13840068-13840148 1.0000 80 chrII:1500554-1500634 1.0000 80 chrIV:6954910-6954990 1.0000 80 chrIII:6009095-6009175 1.0000 80 chrIII:3322488-3322568 1.0000 80 chrV:8662358-8662438 1.0000 80 chrV:5939670-5939750 1.0000 80 chrX:7793789-7793869 1.0000 80 chrV:13788021-13788101 1.0000 80 chrX:6052935-6053015 1.0000 80 chrI:4215769-4215849 1.0000 80 chrIV:9403918-9403998 1.0000 80 chrV:5204333-5204413 1.0000 80 chrX:9086039-9086119 1.0000 80 chrIV:9063710-9063790 1.0000 80 chrIV:7816576-7816656 1.0000 80 chrIII:4343270-4343350 1.0000 80 chrX:1961383-1961463 1.0000 80 chrX:9643262-9643342 1.0000 80 chrIV:4042406-4042486 1.0000 80 chrX:6276997-6277077 1.0000 80 chrI:5281810-5281890 1.0000 80 chrX:6739166-6739246 1.0000 80 chrX:9547420-9547500 1.0000 80 chrII:4133579-4133659 1.0000 80 chrX:7743319-7743399 1.0000 80 chrI:6819523-6819603 1.0000 80 chrIV:1347150-1347230 1.0000 80 chrV:11889651-11889731 1.0000 80 chrV:12635403-12635483 1.0000 80 chrIII:13439568-13439648 1.0000 80 chrIV:2349082-2349162 1.0000 80 chrII:9977027-9977107 1.0000 80 chrX:12177618-12177698 1.0000 80 chrX:4927133-4927213 1.0000 80 chrX:3111310-3111390 1.0000 80 chrI:9701889-9701969 1.0000 80 chrV:14153802-14153882 1.0000 80 chrV:9166469-9166549 1.0000 80 chrX:10350306-10350386 1.0000 80 chrIII:534012-534092 1.0000 80 chrII:14884951-14885031 1.0000 80 chrV:19190196-19190276 1.0000 80 chrIV:8758793-8758873 1.0000 80 chrX:5799341-5799421 1.0000 80 chrII:14898077-14898157 1.0000 80 chrI:14756460-14756540 1.0000 80 chrI:14276750-14276830 1.0000 80 chrI:11993816-11993896 1.0000 80 chrIV:9615682-9615762 1.0000 80 chrV:9513747-9513827 1.0000 80 chrV:9536673-9536753 1.0000 80 chrII:6832848-6832928 1.0000 80 chrII:13083934-13084014 1.0000 80 chrIII:188577-188657 1.0000 80 chrII:7806976-7807056 1.0000 80 chrX:11471239-11471319 1.0000 80 chrIV:8529168-8529248 1.0000 80 chrII:6839143-6839223 1.0000 80 chrV:2603164-2603244 1.0000 80 chrIII:6362433-6362513 1.0000 80 chrIV:12021560-12021640 1.0000 80 chrI:9549048-9549128 1.0000 80 chrI:7993376-7993456 1.0000 80 chrV:3743368-3743448 1.0000 80 chrI:9333189-9333269 1.0000 80 chrIII:11445159-11445239 1.0000 80 chrIV:4171875-4171955 1.0000 80 chrX:7290987-7291067 1.0000 80 chrV:20339061-20339141 1.0000 80 chrX:4307741-4307821 1.0000 80 chrIII:7978852-7978932 1.0000 80 chrX:11470471-11470551 1.0000 80 chrV:8455228-8455308 1.0000 80 chrIII:3855018-3855098 1.0000 80 chrIII:2881383-2881463 1.0000 80 chrV:20424940-20425020 1.0000 80 chrX:9549132-9549212 1.0000 80 chrIII:4862074-4862154 1.0000 80 chrI:7479365-7479445 1.0000 80 chrIII:11286251-11286331 1.0000 80 chrIII:10064296-10064376 1.0000 80 chrV:12295552-12295632 1.0000 80 chrII:7323514-7323594 1.0000 80 chrI:13161957-13162037 1.0000 80 chrI:14928223-14928303 1.0000 80 chrIII:6348777-6348857 1.0000 80 chrIV:11841834-11841914 1.0000 80 chrIV:6156988-6157068 1.0000 80 chrX:7236878-7236958 1.0000 80 chrIII:4905573-4905653 1.0000 80 chrIII:3650848-3650928 1.0000 80 chrIV:9797498-9797578 1.0000 80 chrII:9012043-9012123 1.0000 80 chrIV:1496108-1496188 1.0000 80 chrV:13551747-13551827 1.0000 80 chrV:20704144-20704224 1.0000 80 chrV:16022767-16022847 1.0000 80 chrIV:7101234-7101314 1.0000 80 chrII:7339173-7339253 1.0000 80 chrIII:235309-235389 1.0000 80 chrI:5659101-5659181 1.0000 80 chrIV:2987048-2987128 1.0000 80 chrV:8570019-8570099 1.0000 80 chrV:9094389-9094469 1.0000 80 chrII:6821377-6821457 1.0000 80 chrII:12914873-12914953 1.0000 80 chrIV:1309984-1310064 1.0000 80 chrV:13591643-13591723 1.0000 80 chrII:7888909-7888989 1.0000 80 chrIII:3307545-3307625 1.0000 80 chrII:7327199-7327279 1.0000 80 chrV:18895149-18895229 1.0000 80 chrIV:11315050-11315130 1.0000 80 chrI:5118925-5119005 1.0000 80 chrIII:13296676-13296756 1.0000 80 chrV:5842723-5842803 1.0000 80 chrIV:1953226-1953306 1.0000 80 chrII:2157697-2157777 1.0000 80 chrX:7798484-7798564 1.0000 80 chrX:6639788-6639868 1.0000 80 chrX:4574617-4574697 1.0000 80 chrII:1085107-1085187 1.0000 80 chrI:5025625-5025705 1.0000 80 chrIII:7560004-7560084 1.0000 80 chrV:14500847-14500927 1.0000 80 chrI:12227945-12228025 1.0000 80 chrX:6743020-6743100 1.0000 80 chrII:9262225-9262305 1.0000 80 chrX:2252472-2252552 1.0000 80 chrV:8652395-8652475 1.0000 80 chrX:12210556-12210636 1.0000 80 chrX:2457589-2457669 1.0000 80 chrIII:8631026-8631106 1.0000 80 chrII:10557431-10557511 1.0000 80 chrII:7714902-7714982 1.0000 80 chrI:11038929-11039009 1.0000 80 chrIV:11521088-11521168 1.0000 80 chrIV:6879074-6879154 1.0000 80 chrX:3788643-3788723 1.0000 80 chrI:2577093-2577173 1.0000 80 chrI:4433247-4433327 1.0000 80 chrI:4671882-4671962 1.0000 80 chrX:4818455-4818535 1.0000 80 chrX:13170372-13170452 1.0000 80 chrIV:12209119-12209199 1.0000 80 chrV:7804515-7804595 1.0000 80 chrI:4299583-4299663 1.0000 80 chrX:9528033-9528113 1.0000 80 chrX:2709385-2709465 1.0000 80 chrV:1285853-1285933 1.0000 80 chrIII:10882144-10882224 1.0000 80 chrV:10320334-10320414 1.0000 80 chrI:2830383-2830463 1.0000 80 chrX:7569807-7569887 1.0000 80 chrX:5121958-5122038 1.0000 80 chrIV:5731766-5731846 1.0000 80 chrII:9177278-9177358 1.0000 80 chrIII:12528158-12528238 1.0000 80 chrV:9425713-9425793 1.0000 80 chrIII:13187915-13187995 1.0000 80 chrII:12800305-12800385 1.0000 80 chrIII:11719600-11719680 1.0000 80 chrII:15089586-15089666 1.0000 80 chrV:177051-177131 1.0000 80 chrIV:9777713-9777793 1.0000 80 chrIII:1558612-1558692 1.0000 80 chrIII:2151632-2151712 1.0000 80 chrV:13259631-13259711 1.0000 80 chrI:2024733-2024813 1.0000 80 chrI:4201610-4201690 1.0000 80 chrV:14506866-14506946 1.0000 80 chrX:4588082-4588162 1.0000 80 chrIII:8529065-8529145 1.0000 80 chrX:15668930-15669010 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_irx-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/irx-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.282 C 0.209 G 0.206 T 0.303 Background letter frequencies (from file dataset with add-one prior applied): A 0.282 C 0.209 G 0.206 T 0.303 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTCGGCCA MEME-1 width = 8 sites = 31 llr = 287 E-value = 7.8e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCGGCCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :23::1:6 pos.-specific C a:7::9a: probability G :3:aa::3 matrix T :5:::::1 bits 2.3 * ** * 2.1 * ** * 1.8 * **** 1.6 * **** Relative 1.4 * ***** Entropy 1.1 * ***** (13.3 bits) 0.9 * ***** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTCGGCCA consensus GA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:8529065-8529145 47 6.92e-06 TTCTCTTTTA CTCGGCCA TGGCATACAT chrV:10320334-10320414 36 6.92e-06 CACGCGTTCT CTCGGCCA TGTACTCCTC chrV:20424940-20425020 73 6.92e-06 CTCCATTGCA CTCGGCCA chrI:5281810-5281890 31 6.92e-06 GAACGAATTT CTCGGCCA CGGCCATCAG chrIII:12673518-12673598 63 6.92e-06 GAGACCCCGA CTCGGCCA GGCAAGtttt chrIII:11286251-11286331 25 1.16e-05 TCCGGAGCCC CGCGGCCA CGGCCCCCAC chrIV:11592933-11593013 69 1.16e-05 AATGCTAGTC CGCGGCCA TGAC chrII:12914873-12914953 26 1.67e-05 TTGGCGGATT CTCGGCCG TGTACTCCAC chrIII:5190367-5190447 25 1.67e-05 TTCTGTAGTT CTCGGCCG TGTACTCCTC chrIV:5188216-5188296 26 1.67e-05 GTTTGTGAAA CTCGGCCG TGTACTCCAC chrII:15089586-15089666 31 2.66e-05 TCCTAGGCCA CGCGGCCG TGTAGTCCTC chrV:2603164-2603244 48 2.66e-05 CTTCCTCGTC CACGGCCA TGCGAAATGC chrI:14756460-14756540 14 2.66e-05 AAACCTCGGT CACGGCCA TGCCACTTTT chrIV:9777713-9777793 17 3.59e-05 ATGGAGTTTT CTAGGCCA CATGAACACA chrI:5118925-5119005 45 3.59e-05 CATCAGAAAA CTAGGCCA TTTTTTCACA chrIV:2987048-2987128 46 3.59e-05 TTTGGGAATT CTAGGCCA TCAGGGAATC chrI:5659101-5659181 72 3.59e-05 TTGTCGGTTC CTAGGCCA C chrV:16022767-16022847 67 3.59e-05 AGTGACGCCG CTAGGCCA TTTGGC chrIV:9797498-9797578 66 3.59e-05 AAGGAGACTT CTAGGCCA TATTTGA chrII:5511890-5511970 22 3.59e-05 GCTTGGGTTT CTAGGCCA TACTTTCTAG chrIII:7858603-7858683 4 3.59e-05 TTC CTAGGCCA TCACTCCATA chrX:7569807-7569887 29 4.06e-05 GAGAGTACTT CACGGCCG CGTGGCCTAG chrIII:4343270-4343350 37 4.06e-05 ACGAGGAGTA CACGGCCG ATGGACTAGG chrV:13409230-13409310 26 4.06e-05 GAGAGGAGTA CACGGCCG AGAATCACAA chrIV:6369648-6369728 31 4.06e-05 GAGAGGAGTA CACGGCCG AGTATCACAC chrIV:4171875-4171955 60 6.62e-05 ATTTTCTGCC CGCGGCCT AGAAACCTCC chrIV:4042406-4042486 43 6.62e-05 TTCTCGTGGC CGCGGCCT AGAAATCCCG chrIII:1540287-1540367 1 6.62e-05 . CGCGGCCT AGAAATCCCA chrV:10441272-10441352 13 6.62e-05 GTTTTATGGC CGCGGCCT AGAATCCGAC chrIII:10064296-10064376 63 1.12e-04 GTGTACTCCA CTCGGACA ACATTTTCTT chrII:1085107-1085187 11 1.25e-04 TCCATGTCGT CGCGGACA CCCAACCCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:8529065-8529145 6.9e-06 46_[+1]_26 chrV:10320334-10320414 6.9e-06 35_[+1]_37 chrV:20424940-20425020 6.9e-06 72_[+1] chrI:5281810-5281890 6.9e-06 30_[+1]_42 chrIII:12673518-12673598 6.9e-06 62_[+1]_10 chrIII:11286251-11286331 1.2e-05 24_[+1]_48 chrIV:11592933-11593013 1.2e-05 68_[+1]_4 chrII:12914873-12914953 1.7e-05 25_[+1]_47 chrIII:5190367-5190447 1.7e-05 24_[+1]_48 chrIV:5188216-5188296 1.7e-05 25_[+1]_47 chrII:15089586-15089666 2.7e-05 30_[+1]_42 chrV:2603164-2603244 2.7e-05 47_[+1]_25 chrI:14756460-14756540 2.7e-05 13_[+1]_59 chrIV:9777713-9777793 3.6e-05 16_[+1]_56 chrI:5118925-5119005 3.6e-05 44_[+1]_28 chrIV:2987048-2987128 3.6e-05 45_[+1]_27 chrI:5659101-5659181 3.6e-05 71_[+1]_1 chrV:16022767-16022847 3.6e-05 66_[+1]_6 chrIV:9797498-9797578 3.6e-05 65_[+1]_7 chrII:5511890-5511970 3.6e-05 21_[+1]_51 chrIII:7858603-7858683 3.6e-05 3_[+1]_69 chrX:7569807-7569887 4.1e-05 28_[+1]_44 chrIII:4343270-4343350 4.1e-05 36_[+1]_36 chrV:13409230-13409310 4.1e-05 25_[+1]_47 chrIV:6369648-6369728 4.1e-05 30_[+1]_42 chrIV:4171875-4171955 6.6e-05 59_[+1]_13 chrIV:4042406-4042486 6.6e-05 42_[+1]_30 chrIII:1540287-1540367 6.6e-05 [+1]_72 chrV:10441272-10441352 6.6e-05 12_[+1]_60 chrIII:10064296-10064376 0.00011 62_[+1]_10 chrII:1085107-1085187 0.00013 10_[+1]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCGGCCA width=8 seqs=31 chrIII:8529065-8529145 ( 47) CTCGGCCA 1 chrV:10320334-10320414 ( 36) CTCGGCCA 1 chrV:20424940-20425020 ( 73) CTCGGCCA 1 chrI:5281810-5281890 ( 31) CTCGGCCA 1 chrIII:12673518-12673598 ( 63) CTCGGCCA 1 chrIII:11286251-11286331 ( 25) CGCGGCCA 1 chrIV:11592933-11593013 ( 69) CGCGGCCA 1 chrII:12914873-12914953 ( 26) CTCGGCCG 1 chrIII:5190367-5190447 ( 25) CTCGGCCG 1 chrIV:5188216-5188296 ( 26) CTCGGCCG 1 chrII:15089586-15089666 ( 31) CGCGGCCG 1 chrV:2603164-2603244 ( 48) CACGGCCA 1 chrI:14756460-14756540 ( 14) CACGGCCA 1 chrIV:9777713-9777793 ( 17) CTAGGCCA 1 chrI:5118925-5119005 ( 45) CTAGGCCA 1 chrIV:2987048-2987128 ( 46) CTAGGCCA 1 chrI:5659101-5659181 ( 72) CTAGGCCA 1 chrV:16022767-16022847 ( 67) CTAGGCCA 1 chrIV:9797498-9797578 ( 66) CTAGGCCA 1 chrII:5511890-5511970 ( 22) CTAGGCCA 1 chrIII:7858603-7858683 ( 4) CTAGGCCA 1 chrX:7569807-7569887 ( 29) CACGGCCG 1 chrIII:4343270-4343350 ( 37) CACGGCCG 1 chrV:13409230-13409310 ( 26) CACGGCCG 1 chrIV:6369648-6369728 ( 31) CACGGCCG 1 chrIV:4171875-4171955 ( 60) CGCGGCCT 1 chrIV:4042406-4042486 ( 43) CGCGGCCT 1 chrIII:1540287-1540367 ( 1) CGCGGCCT 1 chrV:10441272-10441352 ( 13) CGCGGCCT 1 chrIII:10064296-10064376 ( 63) CTCGGACA 1 chrII:1085107-1085187 ( 11) CGCGGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.90618 E= 7.8e-012 -1160 226 -1160 -1160 -54 -1160 33 86 -13 183 -1160 -1160 -1160 -1160 228 -1160 -1160 -1160 228 -1160 -213 216 -1160 -1160 -1160 226 -1160 -1160 112 -1160 33 -123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 7.8e-012 0.000000 1.000000 0.000000 0.000000 0.193548 0.000000 0.258065 0.548387 0.258065 0.741935 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.064516 0.935484 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.612903 0.000000 0.258065 0.129032 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCA MEME-1 regular expression -------------------------------------------------------------------------------- C[TG][CA]GGCC[AG] -------------------------------------------------------------------------------- Time 5.52 secs. ******************************************************************************** ******************************************************************************** MOTIF RCGCGCSA MEME-2 width = 8 sites = 49 llr = 390 E-value = 2.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCGCGCSA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 62::::26 pos.-specific C :7:a:733 probability G 41a:a351 matrix T :::::::: bits 2.3 *** 2.1 *** 1.8 *** 1.6 *** Relative 1.4 **** Entropy 1.1 * **** (11.5 bits) 0.9 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACGCGCGA consensus GA GCC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCGCGCSA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:7806976-7807056 19 4.64e-06 CAGCTGCGGG GCGCGCGA AAATGACCAT chrIV:12209119-12209199 67 1.10e-05 ACGGTAAACA ACGCGCGA TTCGTA chrV:13409230-13409310 53 1.10e-05 AAACTCATTC ACGCGCGA AATTCAAATT chrV:177051-177131 27 1.57e-05 CGCACGAGGA GCGCGCCA GCAAACCCGC chrIII:235309-235389 35 1.57e-05 AGGAGAGTGC GCGCGCCA GAGGACGAAA chrIV:1347150-1347230 72 1.57e-05 TGAATTTTAA GCGCGCCA A chrI:5281810-5281890 55 1.57e-05 TCAGTTATTT GCGCGCCA ATTTTGAAAT chrX:4588082-4588162 39 2.56e-05 AGCACGCAAA ACGCGCCA ACCGTTACTT chrIII:11719600-11719680 23 2.56e-05 CTGCTCATTT GCGCGCGC ATTCAAATTT chrV:8570019-8570099 35 2.56e-05 TGCACGAGAA ACGCGCCA ACAAATCGCG chrIV:1496108-1496188 18 2.56e-05 AACACGAGAA ACGCGCCA GCAAACGATA chrIV:2349082-2349162 15 2.56e-05 ACGTCAAGAA ACGCGCCA GCAGACTTTG chrII:1402329-1402409 30 2.56e-05 CTAACGCAAA ACGCGCCA GCAGCCACCC chrV:20704144-20704224 7 3.03e-05 TAAACA ACGCGCGC TGGCGGGATA chrIV:13719053-13719133 39 3.48e-05 GCCGGACAAA GCGCGGGA TATCTTGACA chrI:2830383-2830463 66 4.46e-05 GAGGGGAAAG ACGCGGGA AATTTGA chrX:12177618-12177698 24 4.46e-05 ACTCTTCTTC GCGCGCCC TGGGACAAAA chrI:4433247-4433327 72 6.84e-05 TGAAACAACA ACGCGCGG C chrIII:11286251-11286331 51 6.84e-05 ACGCCTTTTT GCGCGGCA ATTCAAATCA chrIV:5188216-5188296 3 6.84e-05 TC GCGCGCAA AAAAAGTTTG chrV:2603164-2603244 64 9.30e-05 CATGCGAAAT GCGCGGGC ATTCAAATT chrII:6839143-6839223 12 9.30e-05 CCGTCATATG ACGCGGCA AACCGGAGAG chrIII:6009095-6009175 33 9.30e-05 GGTTTATTTG GAGCGCGA CTTGCTCGAC chrI:11038929-11039009 4 1.53e-04 ACA ACGCGCAC TAGCGGGATT chrII:13083934-13084014 8 1.53e-04 TGTACGC AAGCGCCA GAGCCTACGA chrV:9513747-9513827 22 1.53e-04 AAATAAATCA ACGCGCAC ATAATGCGCC chrI:13840068-13840148 34 1.53e-04 TTTGCGTACA AAGCGCCA CACCTGACGC chrIV:5160332-5160412 53 1.53e-04 CTTGTCAATG GAGCGCGC TTACGCAGCT chrIII:1540287-1540367 33 1.53e-04 TTTCTCACTG GAGCGCGC TTGCTCGCTC chrV:18895149-18895229 20 1.68e-04 AAAAATCCGG AAGCGCGC CTTGGACTTT chrV:13591643-13591723 41 1.68e-04 AAAGGGTGGT AAGCGCGC TCCGTTGCAC chrIII:3650848-3650928 29 1.68e-04 TTCGCAAAAT GGGCGCGA GCTATTTGCA chrI:7993376-7993456 14 1.68e-04 GCGAGAAACG GCGCGGGG GCACCATTCT chrII:10714379-10714459 72 1.68e-04 TGTGCACAAA GCGCGGGG A chrII:9262225-9262305 29 1.85e-04 TCAGATACAC ACGCGGGG ACATTTCCCT chrII:12914873-12914953 2 1.85e-04 C GCGCGGAA TTGAGTTTGG chrI:9549048-9549128 1 1.85e-04 . AGGCGCGA ATAATCACAC chrIV:7816576-7816656 31 1.85e-04 GGAAACTCTT GCGCGGAA GTTCAAATTT chrIV:6954910-6954990 54 1.85e-04 CTTCTTGAAA AGGCGCGA AATTCAAATA chrII:763159-763239 40 1.85e-04 GTGTCAAATT ACGCGGGG TAATTTGATC chrX:2709385-2709465 47 1.99e-04 CATGGTCATT ACGCGGAA CAAAAAAAAT chrX:4574617-4574697 8 2.32e-04 CCACATG AAGCGCCC ACTTCCAATA chrIV:1309984-1310064 53 2.57e-04 ATTGGCGCGA ACGCGCAG GTGTTCAAAC chrV:156520-156600 50 2.57e-04 ACACTAAACA GGGCGCGC TAACGACACT chrII:14903774-14903854 21 3.18e-04 TTAACCCATT AAGCGGCA TCTGGTCTCA chrV:5204333-5204413 52 3.69e-04 TGTTGCAATA GAGCGCAC ATGCATTTTC chrV:9094389-9094469 37 4.33e-04 TGAAGGGAGC AGGCGCAA AGAACGATTG chrI:9539448-9539528 55 4.52e-04 CACATTAATT AAGCGGGG TACGAGGTGT chrII:9177278-9177358 15 4.67e-04 ACAAGGCGCT AAGCGGAA TGCCGGAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCGCGCSA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:7806976-7807056 4.6e-06 18_[+2]_54 chrIV:12209119-12209199 1.1e-05 66_[+2]_6 chrV:13409230-13409310 1.1e-05 52_[+2]_20 chrV:177051-177131 1.6e-05 26_[+2]_46 chrIII:235309-235389 1.6e-05 34_[+2]_38 chrIV:1347150-1347230 1.6e-05 71_[+2]_1 chrI:5281810-5281890 1.6e-05 54_[+2]_18 chrX:4588082-4588162 2.6e-05 38_[+2]_34 chrIII:11719600-11719680 2.6e-05 22_[+2]_50 chrV:8570019-8570099 2.6e-05 34_[+2]_38 chrIV:1496108-1496188 2.6e-05 17_[+2]_55 chrIV:2349082-2349162 2.6e-05 14_[+2]_58 chrII:1402329-1402409 2.6e-05 29_[+2]_43 chrV:20704144-20704224 3e-05 6_[+2]_66 chrIV:13719053-13719133 3.5e-05 38_[+2]_34 chrI:2830383-2830463 4.5e-05 65_[+2]_7 chrX:12177618-12177698 4.5e-05 23_[+2]_49 chrI:4433247-4433327 6.8e-05 71_[+2]_1 chrIII:11286251-11286331 6.8e-05 50_[+2]_22 chrIV:5188216-5188296 6.8e-05 2_[+2]_70 chrV:2603164-2603244 9.3e-05 63_[+2]_9 chrII:6839143-6839223 9.3e-05 11_[+2]_61 chrIII:6009095-6009175 9.3e-05 32_[+2]_40 chrI:11038929-11039009 0.00015 3_[+2]_69 chrII:13083934-13084014 0.00015 7_[+2]_65 chrV:9513747-9513827 0.00015 21_[+2]_51 chrI:13840068-13840148 0.00015 33_[+2]_39 chrIV:5160332-5160412 0.00015 52_[+2]_20 chrIII:1540287-1540367 0.00015 32_[+2]_40 chrV:18895149-18895229 0.00017 19_[+2]_53 chrV:13591643-13591723 0.00017 40_[+2]_32 chrIII:3650848-3650928 0.00017 28_[+2]_44 chrI:7993376-7993456 0.00017 13_[+2]_59 chrII:10714379-10714459 0.00017 71_[+2]_1 chrII:9262225-9262305 0.00018 28_[+2]_44 chrII:12914873-12914953 0.00018 1_[+2]_71 chrI:9549048-9549128 0.00018 [+2]_72 chrIV:7816576-7816656 0.00018 30_[+2]_42 chrIV:6954910-6954990 0.00018 53_[+2]_19 chrII:763159-763239 0.00018 39_[+2]_33 chrX:2709385-2709465 0.0002 46_[+2]_26 chrX:4574617-4574697 0.00023 7_[+2]_65 chrIV:1309984-1310064 0.00026 52_[+2]_20 chrV:156520-156600 0.00026 49_[+2]_23 chrII:14903774-14903854 0.00032 20_[+2]_52 chrV:5204333-5204413 0.00037 51_[+2]_21 chrV:9094389-9094469 0.00043 36_[+2]_36 chrI:9539448-9539528 0.00045 54_[+2]_18 chrII:9177278-9177358 0.00047 14_[+2]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCGCGCSA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCGCGCSA width=8 seqs=49 chrII:7806976-7807056 ( 19) GCGCGCGA 1 chrIV:12209119-12209199 ( 67) ACGCGCGA 1 chrV:13409230-13409310 ( 53) ACGCGCGA 1 chrV:177051-177131 ( 27) GCGCGCCA 1 chrIII:235309-235389 ( 35) GCGCGCCA 1 chrIV:1347150-1347230 ( 72) GCGCGCCA 1 chrI:5281810-5281890 ( 55) GCGCGCCA 1 chrX:4588082-4588162 ( 39) ACGCGCCA 1 chrIII:11719600-11719680 ( 23) GCGCGCGC 1 chrV:8570019-8570099 ( 35) ACGCGCCA 1 chrIV:1496108-1496188 ( 18) ACGCGCCA 1 chrIV:2349082-2349162 ( 15) ACGCGCCA 1 chrII:1402329-1402409 ( 30) ACGCGCCA 1 chrV:20704144-20704224 ( 7) ACGCGCGC 1 chrIV:13719053-13719133 ( 39) GCGCGGGA 1 chrI:2830383-2830463 ( 66) ACGCGGGA 1 chrX:12177618-12177698 ( 24) GCGCGCCC 1 chrI:4433247-4433327 ( 72) ACGCGCGG 1 chrIII:11286251-11286331 ( 51) GCGCGGCA 1 chrIV:5188216-5188296 ( 3) GCGCGCAA 1 chrV:2603164-2603244 ( 64) GCGCGGGC 1 chrII:6839143-6839223 ( 12) ACGCGGCA 1 chrIII:6009095-6009175 ( 33) GAGCGCGA 1 chrI:11038929-11039009 ( 4) ACGCGCAC 1 chrII:13083934-13084014 ( 8) AAGCGCCA 1 chrV:9513747-9513827 ( 22) ACGCGCAC 1 chrI:13840068-13840148 ( 34) AAGCGCCA 1 chrIV:5160332-5160412 ( 53) GAGCGCGC 1 chrIII:1540287-1540367 ( 33) GAGCGCGC 1 chrV:18895149-18895229 ( 20) AAGCGCGC 1 chrV:13591643-13591723 ( 41) AAGCGCGC 1 chrIII:3650848-3650928 ( 29) GGGCGCGA 1 chrI:7993376-7993456 ( 14) GCGCGGGG 1 chrII:10714379-10714459 ( 72) GCGCGGGG 1 chrII:9262225-9262305 ( 29) ACGCGGGG 1 chrII:12914873-12914953 ( 2) GCGCGGAA 1 chrI:9549048-9549128 ( 1) AGGCGCGA 1 chrIV:7816576-7816656 ( 31) GCGCGGAA 1 chrIV:6954910-6954990 ( 54) AGGCGCGA 1 chrII:763159-763239 ( 40) ACGCGGGG 1 chrX:2709385-2709465 ( 47) ACGCGGAA 1 chrX:4574617-4574697 ( 8) AAGCGCCC 1 chrIV:1309984-1310064 ( 53) ACGCGCAG 1 chrV:156520-156600 ( 50) GGGCGCGC 1 chrII:14903774-14903854 ( 21) AAGCGGCA 1 chrV:5204333-5204413 ( 52) GAGCGCAC 1 chrV:9094389-9094469 ( 37) AGGCGCAA 1 chrI:9539448-9539528 ( 55) AAGCGGGG 1 chrII:9177278-9177358 ( 15) AAGCGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCGCGCSA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6437 E= 2.5e-007 102 -1226 106 -1226 -20 164 -101 -1226 -1226 -1226 228 -1226 -1226 226 -1226 -1226 -1226 -1226 228 -1226 -1226 173 57 -1226 -47 64 119 -1226 107 34 -53 -1226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCGCGCSA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 2.5e-007 0.571429 0.000000 0.428571 0.000000 0.244898 0.653061 0.102041 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.693878 0.306122 0.000000 0.204082 0.326531 0.469388 0.000000 0.591837 0.265306 0.142857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCGCGCSA MEME-2 regular expression -------------------------------------------------------------------------------- [AG][CA]GCG[CG][GCA][AC] -------------------------------------------------------------------------------- Time 10.15 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCCKAG MEME-3 width = 8 sites = 23 llr = 215 E-value = 1.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::2::8: pos.-specific C :::8a:1: probability G :a9::5:a matrix T a:1::51: bits 2.3 * * * 2.1 * * * 1.8 * * * 1.6 ***** * Relative 1.4 ***** * Entropy 1.1 ***** * (13.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGCCTAG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:10064296-10064376 21 6.72e-06 AAATCAAGCC TGGCCGAG GTGGCCGTGG chrIII:12673518-12673598 48 6.72e-06 CACGGCGTGG TGGCCGAG ACCCCGACTC chrIII:8529065-8529145 27 1.66e-05 GAATCGTCGC TGGCCTAG TTTTCTCTTT chrX:7569807-7569887 39 1.66e-05 CACGGCCGCG TGGCCTAG TTTTTTCAAT chrI:5118925-5119005 6 1.66e-05 CAAGA TGGCCTAG AATTTCAACT chrI:5659101-5659181 44 1.66e-05 AACGAAAATA TGGCCTAG AAATATTCGC chrIV:9797498-9797578 38 1.66e-05 ACAAACGCCT TGGCCTAG AACTTTCACA chrV:20424940-20425020 34 1.66e-05 TTCCCAATGG TGGCCTAG AAAACCCCGA chrV:9536673-9536753 46 1.66e-05 CACCCAAACG TGGCCTAG CAATACCCAA chrIII:13439568-13439648 18 1.66e-05 AAAATATCGG TGGCCTAG TGGCCGTGGA chrIV:7816576-7816656 14 1.66e-05 CACCACCGTG TGGCCTAG GAAACTCTTG chrIII:11286251-11286331 5 2.57e-05 GAGA TGGACGAG GTTCCGGAGC chrII:10714379-10714459 23 2.57e-05 TAATAATTAA TGGACGAG GTTTTGAAGA chrV:16022767-16022847 44 3.07e-05 GGTGGCCGCG TGGCCGCG GACTAAGTGA chrIII:3855018-3855098 73 3.07e-05 AAAGCTAACG TGGCCGCG chrIV:11315050-11315130 20 4.40e-05 ACACGCAACA TGGACTAG AATTTCGTGC chrIII:4343270-4343350 46 4.40e-05 ACACGGCCGA TGGACTAG GAACACACTG chrX:7798484-7798564 39 6.84e-05 ATGGAGGGTG TGGCCGTG TAAGAGGGGG chrIII:13296676-13296756 14 6.84e-05 TCTTCTCGTT TGTCCGAG AGGACTACAC chrV:13409230-13409310 11 6.84e-05 ATTAACTAAT TGTCCGAG AGGAGTACAC chrIV:6369648-6369728 16 6.84e-05 ATTAATTAAT TGTCCGAG AGGAGTACAC chrV:13259631-13259711 4 9.36e-05 GAA TGGCCTTG AAAAACATCT chrIV:1347150-1347230 2 9.82e-05 G CGGCCGAG GAGGAAACCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:10064296-10064376 6.7e-06 20_[+3]_52 chrIII:12673518-12673598 6.7e-06 47_[+3]_25 chrIII:8529065-8529145 1.7e-05 26_[+3]_46 chrX:7569807-7569887 1.7e-05 38_[+3]_34 chrI:5118925-5119005 1.7e-05 5_[+3]_67 chrI:5659101-5659181 1.7e-05 43_[+3]_29 chrIV:9797498-9797578 1.7e-05 37_[+3]_35 chrV:20424940-20425020 1.7e-05 33_[+3]_39 chrV:9536673-9536753 1.7e-05 45_[+3]_27 chrIII:13439568-13439648 1.7e-05 17_[+3]_55 chrIV:7816576-7816656 1.7e-05 13_[+3]_59 chrIII:11286251-11286331 2.6e-05 4_[+3]_68 chrII:10714379-10714459 2.6e-05 22_[+3]_50 chrV:16022767-16022847 3.1e-05 43_[+3]_29 chrIII:3855018-3855098 3.1e-05 72_[+3] chrIV:11315050-11315130 4.4e-05 19_[+3]_53 chrIII:4343270-4343350 4.4e-05 45_[+3]_27 chrX:7798484-7798564 6.8e-05 38_[+3]_34 chrIII:13296676-13296756 6.8e-05 13_[+3]_59 chrV:13409230-13409310 6.8e-05 10_[+3]_62 chrIV:6369648-6369728 6.8e-05 15_[+3]_57 chrV:13259631-13259711 9.4e-05 3_[+3]_69 chrIV:1347150-1347230 9.8e-05 1_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCCKAG width=8 seqs=23 chrIII:10064296-10064376 ( 21) TGGCCGAG 1 chrIII:12673518-12673598 ( 48) TGGCCGAG 1 chrIII:8529065-8529145 ( 27) TGGCCTAG 1 chrX:7569807-7569887 ( 39) TGGCCTAG 1 chrI:5118925-5119005 ( 6) TGGCCTAG 1 chrI:5659101-5659181 ( 44) TGGCCTAG 1 chrIV:9797498-9797578 ( 38) TGGCCTAG 1 chrV:20424940-20425020 ( 34) TGGCCTAG 1 chrV:9536673-9536753 ( 46) TGGCCTAG 1 chrIII:13439568-13439648 ( 18) TGGCCTAG 1 chrIV:7816576-7816656 ( 14) TGGCCTAG 1 chrIII:11286251-11286331 ( 5) TGGACGAG 1 chrII:10714379-10714459 ( 23) TGGACGAG 1 chrV:16022767-16022847 ( 44) TGGCCGCG 1 chrIII:3855018-3855098 ( 73) TGGCCGCG 1 chrIV:11315050-11315130 ( 20) TGGACTAG 1 chrIII:4343270-4343350 ( 46) TGGACTAG 1 chrX:7798484-7798564 ( 39) TGGCCGTG 1 chrIII:13296676-13296756 ( 14) TGTCCGAG 1 chrV:13409230-13409310 ( 11) TGTCCGAG 1 chrIV:6369648-6369728 ( 16) TGTCCGAG 1 chrV:13259631-13259711 ( 4) TGGCCTTG 1 chrIV:1347150-1347230 ( 2) CGGCCGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6953 E= 1.2e-003 -1117 -226 -1117 166 -1117 -1117 228 -1117 -1117 -1117 208 -121 -70 198 -1117 -1117 -1117 226 -1117 -1117 -1117 -1117 122 78 155 -127 -1117 -180 -1117 -1117 228 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.2e-003 0.000000 0.043478 0.000000 0.956522 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.869565 0.130435 0.173913 0.826087 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.478261 0.521739 0.826087 0.086957 0.000000 0.086957 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-3 regular expression -------------------------------------------------------------------------------- TGGCC[TG]AG -------------------------------------------------------------------------------- Time 13.67 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTACTCC MEME-4 width = 8 sites = 11 llr = 114 E-value = 1.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTACTCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C ::::8:aa probability G 1a::2::: matrix T 9:a::a:: bits 2.3 * ** 2.1 * ** 1.8 *** *** 1.6 ******* Relative 1.4 ******** Entropy 1.1 ******** (15.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTACTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTACTCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:10320334-10320414 44 1.48e-05 CTCTCGGCCA TGTACTCC TCTCGGACAA chrV:13591643-13591723 65 1.48e-05 GCACAGCCTG TGTACTCC TCTCGGCC chrII:12914873-12914953 34 1.48e-05 TTCTCGGCCG TGTACTCC ACTCGGACAA chrIII:10064296-10064376 54 1.48e-05 AAGTGGCGCG TGTACTCC ACTCGGACAA chrIV:1347150-1347230 33 1.48e-05 CCCCGCTCGG TGTACTCC TCTCGGATAA chrIII:5190367-5190447 33 1.48e-05 TTCTCGGCCG TGTACTCC TCTCGGATAA chrIV:5188216-5188296 34 1.48e-05 AACTCGGCCG TGTACTCC ACTCGGACAA chrV:10441272-10441352 36 1.48e-05 CCGACAACCG TGTACTCC TCCTAGACAA chrII:15089586-15089666 39 2.93e-05 CACGCGGCCG TGTAGTCC TCCTGGACAA chrV:9536673-9536753 67 2.93e-05 TACCCAAGTG TGTAGTCC TCTCCG chrI:9555139-9555219 32 3.93e-05 ATCGTGTATA GGTACTCC ACAATTGACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTACTCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:10320334-10320414 1.5e-05 43_[+4]_29 chrV:13591643-13591723 1.5e-05 64_[+4]_8 chrII:12914873-12914953 1.5e-05 33_[+4]_39 chrIII:10064296-10064376 1.5e-05 53_[+4]_19 chrIV:1347150-1347230 1.5e-05 32_[+4]_40 chrIII:5190367-5190447 1.5e-05 32_[+4]_40 chrIV:5188216-5188296 1.5e-05 33_[+4]_39 chrV:10441272-10441352 1.5e-05 35_[+4]_37 chrII:15089586-15089666 2.9e-05 38_[+4]_34 chrV:9536673-9536753 2.9e-05 66_[+4]_6 chrI:9555139-9555219 3.9e-05 31_[+4]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTACTCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTACTCC width=8 seqs=11 chrV:10320334-10320414 ( 44) TGTACTCC 1 chrV:13591643-13591723 ( 65) TGTACTCC 1 chrII:12914873-12914953 ( 34) TGTACTCC 1 chrIII:10064296-10064376 ( 54) TGTACTCC 1 chrIV:1347150-1347230 ( 33) TGTACTCC 1 chrIII:5190367-5190447 ( 33) TGTACTCC 1 chrIV:5188216-5188296 ( 34) TGTACTCC 1 chrV:10441272-10441352 ( 36) TGTACTCC 1 chrII:15089586-15089666 ( 39) TGTAGTCC 1 chrV:9536673-9536753 ( 67) TGTAGTCC 1 chrI:9555139-9555219 ( 32) GGTACTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTACTCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 1.8e+002 -1010 -1010 -118 158 -1010 -1010 228 -1010 -1010 -1010 -1010 172 182 -1010 -1010 -1010 -1010 197 -18 -1010 -1010 -1010 -1010 172 -1010 226 -1010 -1010 -1010 226 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTACTCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.8e+002 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.818182 0.181818 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTACTCC MEME-4 regular expression -------------------------------------------------------------------------------- TGTACTCC -------------------------------------------------------------------------------- Time 17.15 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAARAA MEME-5 width = 8 sites = 46 llr = 349 E-value = 1.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAARAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A aa7a837a pos.-specific C ::::::2: probability G ::3::51: matrix T ::::22:: bits 2.3 2.1 1.8 ** * * 1.6 ** * * Relative 1.4 ** * * Entropy 1.1 ***** * (10.9 bits) 0.9 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAGAA consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAARAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:1085107-1085187 35 2.92e-05 CCTCGTCATC AAAAAGAA GCCTGCGTCT chrIV:12021560-12021640 65 2.92e-05 TCCGATTGGA AAAAAGAA CAGAGAAT chrIV:9403918-9403998 29 2.92e-05 AATGAAAATA AAAAAGAA AGTGCGGTGG chrIII:12673518-12673598 1 2.92e-05 . aaaaagaa tTGTTTGTCC chrV:12300966-12301046 61 2.92e-05 ACCTGATTAG AAAAAGAA GAAGGTTATA chrX:2709385-2709465 56 9.06e-05 TACGCGGAAC AAAAAAAA TTCCAGCTCA chrV:7804515-7804595 68 9.06e-05 TAAACATGCG AAAAAAAA TCACA chrIV:12209119-12209199 20 9.06e-05 TTTTCAATTA AAAAAAAA TTTCAGAGAA chrIII:10064296-10064376 6 9.06e-05 AACGA AAAAAAAA TCAAGCCTGG chrI:14276750-14276830 69 9.06e-05 TTTTTTTTTG AAAAAAAA ATTT chrV:14153802-14153882 27 9.06e-05 CTGAAGGGAG AAGAAGAA GCAGGATTTC chrV:5204333-5204413 5 9.06e-05 TTGA AAAAAAAA ACTAAATTTG chrIV:8824514-8824594 50 9.06e-05 ATTTTTTGTT AAGAAGAA GATGCCCGTT chrV:18718227-18718307 39 9.06e-05 ttgaaattta aaaaaaaa atttttaatc chrII:7327199-7327279 64 1.12e-04 ACGACGAGGA AAAAAGCA GAAGAGAGA chrX:3819849-3819929 54 1.12e-04 TTTGAACGAT AAAAAGCA CTGCTGTGGT chrIV:5731766-5731846 49 1.34e-04 GACACACATG AAAAAGGA GGGAGTTCAA chrX:2457589-2457669 58 1.34e-04 TTTGTGAACA AAAAAGGA CGAAGAGAGA chrV:13259631-13259711 65 2.37e-04 AAACATTTGG AAGAAAAA CGTGATTT chrI:2830383-2830463 14 2.37e-04 CATTTAAAAC AAGAAAAA AGGGGGACTA chrX:9528033-9528113 72 2.37e-04 TTTGATTAAA AAAATGAA A chrX:3788643-3788723 59 2.37e-04 CGATTTTCGA AAAATGAA CAATAAAACT chrII:7714902-7714982 53 2.37e-04 GAATGTACAT AAAATGAA GAGATTGAAA chrV:13591643-13591723 25 2.37e-04 TTTTTCAAAT AAAATGAA AGGGTGGTAA chrIV:9797498-9797578 4 2.37e-04 ATT AAAAATAA ATTTAAAATT chrIII:2881383-2881463 34 2.37e-04 ACACCCGTAG AAAAATAA GACTGACGAA chrV:9513747-9513827 10 2.37e-04 ATACAACAA AAAAATAA ATCAACGCGC chrIII:13439568-13439648 35 2.37e-04 GTGGCCGTGG AAGAAAAA ACAATACATA chrV:11889651-11889731 45 2.37e-04 TACTTCTATT AAAAATAA CACGAAACAA chrX:6276997-6277077 6 2.37e-04 AGGGC AAAATGAA CAATAAAGGA chrX:7793789-7793869 12 2.37e-04 atcttcggga aaaatgaa aggaaatgcg chrII:1500554-1500634 22 2.37e-04 TAAAAATTGA AAAATGAA AAAGTTCCTC chrI:323622-323702 68 2.37e-04 ACGTGCATAA AAAAATAA ATTAA chrV:19666488-19666568 59 2.37e-04 TCACAGTGAC AAGAAAAA AACAGCTGCC chrII:14891583-14891663 1 2.37e-04 . AAAAATAA TTTTCAAGAA chrII:10714379-10714459 1 2.37e-04 . AAAAATAA AATTTAATAA chrIV:11592933-11593013 5 2.37e-04 AATT AAGAAAAA CTAATTTCCC chrX:15668930-15669010 23 2.83e-04 TTATGTGCAA AAGAAGCA TTAAACCTCC chrIII:8631026-8631106 52 2.83e-04 AGACAGCTTG AAAAAACa tttatttttt chrI:9548847-9548927 40 2.83e-04 TCTAGCAGGG AAGAAGCA AGAAGTAGAT chrIII:6348777-6348857 71 3.27e-04 GGAAGCATTG AAGAAGGA AT chrI:14928223-14928303 48 3.27e-04 AGAGTGAGAG AAGAAGGA CGCACATACT chrII:763159-763239 15 3.27e-04 CATTGTGGGG AAAAAAGA GGAAAAAGTG chrII:10557431-10557511 50 5.01e-04 TATATTCTTG AAGAAACA TTTACAAGAA chrIII:6362433-6362513 12 5.01e-04 AGACATAGAG AAAATGCA GAACAAAACG chrX:6739166-6739246 18 5.77e-04 TGATTGGTAC AAAATGGA ATTTAGTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAARAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:1085107-1085187 2.9e-05 34_[+5]_38 chrIV:12021560-12021640 2.9e-05 64_[+5]_8 chrIV:9403918-9403998 2.9e-05 28_[+5]_44 chrIII:12673518-12673598 2.9e-05 [+5]_72 chrV:12300966-12301046 2.9e-05 60_[+5]_12 chrX:2709385-2709465 9.1e-05 55_[+5]_17 chrV:7804515-7804595 9.1e-05 67_[+5]_5 chrIV:12209119-12209199 9.1e-05 19_[+5]_53 chrIII:10064296-10064376 9.1e-05 5_[+5]_67 chrI:14276750-14276830 9.1e-05 68_[+5]_4 chrV:14153802-14153882 9.1e-05 26_[+5]_46 chrV:5204333-5204413 9.1e-05 4_[+5]_68 chrIV:8824514-8824594 9.1e-05 49_[+5]_23 chrV:18718227-18718307 9.1e-05 38_[+5]_34 chrII:7327199-7327279 0.00011 63_[+5]_9 chrX:3819849-3819929 0.00011 53_[+5]_19 chrIV:5731766-5731846 0.00013 48_[+5]_24 chrX:2457589-2457669 0.00013 57_[+5]_15 chrV:13259631-13259711 0.00024 64_[+5]_8 chrI:2830383-2830463 0.00024 13_[+5]_59 chrX:9528033-9528113 0.00024 71_[+5]_1 chrX:3788643-3788723 0.00024 58_[+5]_14 chrII:7714902-7714982 0.00024 52_[+5]_20 chrV:13591643-13591723 0.00024 24_[+5]_48 chrIV:9797498-9797578 0.00024 3_[+5]_69 chrIII:2881383-2881463 0.00024 33_[+5]_39 chrV:9513747-9513827 0.00024 9_[+5]_63 chrIII:13439568-13439648 0.00024 34_[+5]_38 chrV:11889651-11889731 0.00024 44_[+5]_28 chrX:6276997-6277077 0.00024 5_[+5]_67 chrX:7793789-7793869 0.00024 11_[+5]_61 chrII:1500554-1500634 0.00024 21_[+5]_51 chrI:323622-323702 0.00024 67_[+5]_5 chrV:19666488-19666568 0.00024 58_[+5]_14 chrII:14891583-14891663 0.00024 [+5]_72 chrII:10714379-10714459 0.00024 [+5]_72 chrIV:11592933-11593013 0.00024 4_[+5]_68 chrX:15668930-15669010 0.00028 22_[+5]_50 chrIII:8631026-8631106 0.00028 51_[+5]_21 chrI:9548847-9548927 0.00028 39_[+5]_33 chrIII:6348777-6348857 0.00033 70_[+5]_2 chrI:14928223-14928303 0.00033 47_[+5]_25 chrII:763159-763239 0.00033 14_[+5]_58 chrII:10557431-10557511 0.0005 49_[+5]_23 chrIII:6362433-6362513 0.0005 11_[+5]_61 chrX:6739166-6739246 0.00058 17_[+5]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAARAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAARAA width=8 seqs=46 chrII:1085107-1085187 ( 35) AAAAAGAA 1 chrIV:12021560-12021640 ( 65) AAAAAGAA 1 chrIV:9403918-9403998 ( 29) AAAAAGAA 1 chrIII:12673518-12673598 ( 1) AAAAAGAA 1 chrV:12300966-12301046 ( 61) AAAAAGAA 1 chrX:2709385-2709465 ( 56) AAAAAAAA 1 chrV:7804515-7804595 ( 68) AAAAAAAA 1 chrIV:12209119-12209199 ( 20) AAAAAAAA 1 chrIII:10064296-10064376 ( 6) AAAAAAAA 1 chrI:14276750-14276830 ( 69) AAAAAAAA 1 chrV:14153802-14153882 ( 27) AAGAAGAA 1 chrV:5204333-5204413 ( 5) AAAAAAAA 1 chrIV:8824514-8824594 ( 50) AAGAAGAA 1 chrV:18718227-18718307 ( 39) AAAAAAAA 1 chrII:7327199-7327279 ( 64) AAAAAGCA 1 chrX:3819849-3819929 ( 54) AAAAAGCA 1 chrIV:5731766-5731846 ( 49) AAAAAGGA 1 chrX:2457589-2457669 ( 58) AAAAAGGA 1 chrV:13259631-13259711 ( 65) AAGAAAAA 1 chrI:2830383-2830463 ( 14) AAGAAAAA 1 chrX:9528033-9528113 ( 72) AAAATGAA 1 chrX:3788643-3788723 ( 59) AAAATGAA 1 chrII:7714902-7714982 ( 53) AAAATGAA 1 chrV:13591643-13591723 ( 25) AAAATGAA 1 chrIV:9797498-9797578 ( 4) AAAAATAA 1 chrIII:2881383-2881463 ( 34) AAAAATAA 1 chrV:9513747-9513827 ( 10) AAAAATAA 1 chrIII:13439568-13439648 ( 35) AAGAAAAA 1 chrV:11889651-11889731 ( 45) AAAAATAA 1 chrX:6276997-6277077 ( 6) AAAATGAA 1 chrX:7793789-7793869 ( 12) AAAATGAA 1 chrII:1500554-1500634 ( 22) AAAATGAA 1 chrI:323622-323702 ( 68) AAAAATAA 1 chrV:19666488-19666568 ( 59) AAGAAAAA 1 chrII:14891583-14891663 ( 1) AAAAATAA 1 chrII:10714379-10714459 ( 1) AAAAATAA 1 chrIV:11592933-11593013 ( 5) AAGAAAAA 1 chrX:15668930-15669010 ( 23) AAGAAGCA 1 chrIII:8631026-8631106 ( 52) AAAAAACA 1 chrI:9548847-9548927 ( 40) AAGAAGCA 1 chrIII:6348777-6348857 ( 71) AAGAAGGA 1 chrI:14928223-14928303 ( 48) AAGAAGGA 1 chrII:763159-763239 ( 15) AAAAAAGA 1 chrII:10557431-10557511 ( 50) AAGAAACA 1 chrIII:6362433-6362513 ( 12) AAAATGCA 1 chrX:6739166-6739246 ( 18) AAAATGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAARAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1909 E= 1.1e+003 183 -1217 -1217 -1217 183 -1217 -1217 -1217 139 -1217 34 -1217 183 -1217 -1217 -1217 151 -1217 -1217 -63 21 -1217 134 -99 135 -46 -66 -1217 183 -1217 -1217 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAARAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 1.1e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.739130 0.000000 0.260870 0.000000 1.000000 0.000000 0.000000 0.000000 0.804348 0.000000 0.000000 0.195652 0.326087 0.000000 0.521739 0.152174 0.717391 0.152174 0.130435 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAARAA MEME-5 regular expression -------------------------------------------------------------------------------- AA[AG]AA[GA]AA -------------------------------------------------------------------------------- Time 20.64 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:9546401-9546481 5.31e-01 80 chrII:14892656-14892736 8.84e-02 80 chrI:9555139-9555219 4.53e-02 31_[+4(3.93e-05)]_41 chrII:14903774-14903854 4.22e-01 80 chrI:9548847-9548927 2.09e-01 80 chrI:9539448-9539528 2.60e-01 80 chrI:9541226-9541306 1.26e-01 80 chrI:9551344-9551424 8.75e-01 80 chrI:9545577-9545657 8.72e-01 80 chrV:12300966-12301046 1.60e-01 60_[+5(2.92e-05)]_12 chrI:10099320-10099400 4.89e-01 80 chrI:9553509-9553589 7.37e-01 80 chrI:3754625-3754705 6.24e-01 80 chrIV:8040802-8040882 4.66e-01 80 chrII:763159-763239 6.83e-02 80 chrV:8661431-8661511 2.73e-01 80 chrI:9539650-9539730 6.61e-01 80 chrIV:13695848-13695928 4.05e-01 80 chrX:13745761-13745841 4.11e-01 80 chrX:17424437-17424517 2.88e-01 80 chrII:232430-232510 9.88e-01 80 chrI:11062107-11062187 8.97e-01 80 chrX:9848781-9848861 7.86e-01 80 chrV:4508294-4508374 7.29e-01 80 chrII:1402329-1402409 7.20e-02 29_[+2(2.56e-05)]_43 chrV:10441272-10441352 1.16e-05 8_[+3(3.07e-05)]_19_[+4(1.48e-05)]_\ 37 chrII:484535-484615 1.00e+00 80 chrX:17427907-17427987 3.26e-03 59_[+4(4.92e-05)]_13 chrX:2802887-2802967 4.76e-01 80 chrX:12008083-12008163 5.23e-01 80 chrIII:7858603-7858683 4.41e-02 3_[+1(3.59e-05)]_69 chrIV:13682906-13682986 8.22e-01 80 chrV:265226-265306 7.95e-01 80 chrIV:5188216-5188296 3.49e-07 2_[+2(6.84e-05)]_15_[+1(1.67e-05)]_\ [+4(1.48e-05)]_39 chrIII:12673518-12673598 9.68e-07 [+5(2.92e-05)]_14_[+3(9.36e-05)]_17_\ [+3(6.72e-06)]_7_[+1(6.92e-06)]_10 chrIV:11592933-11593013 5.39e-05 68_[+1(1.16e-05)]_4 chrIV:6369648-6369728 2.00e-04 15_[+3(6.84e-05)]_7_[+1(4.06e-05)]_\ 42 chrI:10751754-10751834 2.46e-01 80 chrV:18710166-18710246 6.60e-01 80 chrX:9403779-9403859 7.53e-01 80 chrI:5400286-5400366 1.70e-01 80 chrII:10714379-10714459 5.50e-05 22_[+3(2.57e-05)]_50 chrX:14487485-14487565 8.76e-01 80 chrII:14891583-14891663 5.49e-01 80 chrIII:5190367-5190447 3.65e-05 24_[+1(1.67e-05)]_[+4(1.48e-05)]_40 chrV:156520-156600 1.19e-01 80 chrIV:13719053-13719133 1.26e-01 38_[+2(3.48e-05)]_34 chrX:12025158-12025238 6.09e-01 80 chrX:13113572-13113652 1.00e+00 80 chrV:8774046-8774126 9.14e-01 80 chrX:14500477-14500557 9.13e-01 80 chrX:16777049-16777129 3.97e-01 80 chrX:3819849-3819929 5.75e-02 80 chrIII:1540287-1540367 6.84e-04 [+1(6.62e-05)]_72 chrX:13539862-13539942 7.77e-01 80 chrIV:1623899-1623979 7.92e-01 80 chrI:7759146-7759226 4.55e-01 80 chrIII:7554987-7555067 7.62e-01 80 chrII:14569530-14569610 2.09e-01 80 chrIV:9790887-9790967 7.69e-01 80 chrV:20493683-20493763 9.25e-01 80 chrV:18718227-18718307 8.16e-03 37_[+5(9.06e-05)]_35 chrV:19666488-19666568 1.62e-01 80 chrV:13409230-13409310 2.28e-05 10_[+3(6.84e-05)]_7_[+1(4.06e-05)]_\ 19_[+2(1.10e-05)]_20 chrII:5511890-5511970 1.46e-01 21_[+1(3.59e-05)]_6_[+1(3.59e-05)]_\ 37 chrII:14043070-14043150 9.66e-01 80 chrIV:13721126-13721206 8.19e-01 80 chrII:2687091-2687171 7.55e-01 80 chrX:6275423-6275503 5.15e-01 80 chrI:323622-323702 1.84e-01 80 chrX:15327347-15327427 9.59e-01 80 chrII:3956893-3956973 6.36e-01 80 chrV:12599259-12599339 7.85e-01 80 chrIV:8824514-8824594 3.52e-01 49_[+5(9.06e-05)]_23 chrIV:5160332-5160412 9.84e-02 80 chrI:13840068-13840148 1.83e-01 80 chrII:1500554-1500634 5.01e-01 80 chrIV:6954910-6954990 4.16e-01 80 chrIII:6009095-6009175 1.20e-01 32_[+2(9.30e-05)]_40 chrIII:3322488-3322568 7.38e-01 80 chrV:8662358-8662438 8.03e-01 80 chrV:5939670-5939750 7.93e-01 80 chrX:7793789-7793869 4.13e-02 80 chrV:13788021-13788101 3.86e-01 80 chrX:6052935-6053015 5.42e-01 80 chrI:4215769-4215849 3.15e-01 80 chrIV:9403918-9403998 2.91e-02 28_[+5(2.92e-05)]_44 chrV:5204333-5204413 4.10e-02 3_[+5(9.06e-05)]_69 chrX:9086039-9086119 9.39e-01 80 chrIV:9063710-9063790 2.97e-01 80 chrIV:7816576-7816656 2.96e-03 13_[+3(1.66e-05)]_59 chrIII:4343270-4343350 2.61e-03 36_[+1(4.06e-05)]_1_[+3(4.40e-05)]_\ 27 chrX:1961383-1961463 2.61e-01 80 chrX:9643262-9643342 4.85e-01 80 chrIV:4042406-4042486 6.75e-04 38_[+3(3.07e-05)]_34 chrX:6276997-6277077 5.38e-01 80 chrI:5281810-5281890 2.46e-05 30_[+1(6.92e-06)]_16_[+2(1.57e-05)]_\ 18 chrX:6739166-6739246 2.17e-01 80 chrX:9547420-9547500 9.72e-01 80 chrII:4133579-4133659 1.78e-01 80 chrX:7743319-7743399 2.04e-01 80 chrI:6819523-6819603 8.01e-01 80 chrIV:1347150-1347230 1.03e-05 1_[+3(9.82e-05)]_23_[+4(1.48e-05)]_\ 31_[+2(1.57e-05)]_1 chrV:11889651-11889731 4.67e-01 80 chrV:12635403-12635483 9.03e-01 80 chrIII:13439568-13439648 5.39e-03 17_[+3(1.66e-05)]_[+3(6.84e-05)]_47 chrIV:2349082-2349162 2.89e-02 14_[+2(2.56e-05)]_58 chrII:9977027-9977107 3.52e-01 80 chrX:12177618-12177698 2.51e-02 23_[+2(4.46e-05)]_49 chrX:4927133-4927213 6.18e-01 80 chrX:3111310-3111390 4.32e-02 80 chrI:9701889-9701969 3.41e-01 80 chrV:14153802-14153882 4.41e-02 26_[+5(9.06e-05)]_46 chrV:9166469-9166549 9.45e-01 80 chrX:10350306-10350386 5.99e-01 80 chrIII:534012-534092 9.27e-01 80 chrII:14884951-14885031 2.67e-01 80 chrV:19190196-19190276 6.63e-01 80 chrIV:8758793-8758873 6.70e-01 80 chrX:5799341-5799421 1.28e-01 80 chrII:14898077-14898157 9.35e-01 80 chrI:14756460-14756540 5.08e-02 13_[+1(2.66e-05)]_59 chrI:14276750-14276830 1.85e-02 68_[+5(9.06e-05)]_4 chrI:11993816-11993896 5.57e-01 80 chrIV:9615682-9615762 9.47e-01 80 chrV:9513747-9513827 1.37e-02 80 chrV:9536673-9536753 1.58e-04 45_[+3(1.66e-05)]_13_[+4(2.93e-05)]_\ 6 chrII:6832848-6832928 6.28e-01 80 chrII:13083934-13084014 5.58e-02 80 chrIII:188577-188657 8.92e-01 80 chrII:7806976-7807056 1.14e-02 18_[+2(4.64e-06)]_54 chrX:11471239-11471319 6.28e-01 80 chrIV:8529168-8529248 5.27e-01 80 chrII:6839143-6839223 2.97e-02 11_[+2(9.30e-05)]_61 chrV:2603164-2603244 6.03e-04 47_[+1(2.66e-05)]_8_[+2(9.30e-05)]_\ 9 chrIII:6362433-6362513 3.94e-01 80 chrIV:12021560-12021640 8.78e-02 64_[+5(2.92e-05)]_8 chrI:9549048-9549128 2.59e-01 80 chrI:7993376-7993456 1.54e-01 80 chrV:3743368-3743448 1.81e-01 80 chrI:9333189-9333269 9.98e-01 80 chrIII:11445159-11445239 7.04e-01 80 chrIV:4171875-4171955 1.90e-03 59_[+1(6.62e-05)]_13 chrX:7290987-7291067 9.99e-01 80 chrV:20339061-20339141 7.23e-01 80 chrX:4307741-4307821 7.39e-01 80 chrIII:7978852-7978932 9.61e-01 80 chrX:11470471-11470551 9.13e-01 80 chrV:8455228-8455308 4.63e-01 80 chrIII:3855018-3855098 3.77e-03 72_[+3(3.07e-05)] chrIII:2881383-2881463 4.00e-01 80 chrV:20424940-20425020 1.09e-04 33_[+3(1.66e-05)]_31_[+1(6.92e-06)] chrX:9549132-9549212 2.24e-01 80 chrIII:4862074-4862154 8.79e-01 80 chrI:7479365-7479445 5.43e-01 80 chrIII:11286251-11286331 2.89e-05 4_[+3(2.57e-05)]_12_[+1(1.16e-05)]_\ 18_[+2(6.84e-05)]_22 chrIII:10064296-10064376 2.07e-07 4_[+5(9.06e-05)]_8_[+3(6.72e-06)]_7_\ [+3(1.66e-05)]_10_[+4(1.48e-05)]_19 chrV:12295552-12295632 5.13e-01 80 chrII:7323514-7323594 8.83e-01 80 chrI:13161957-13162037 5.57e-01 80 chrI:14928223-14928303 2.80e-01 80 chrIII:6348777-6348857 1.25e-01 80 chrIV:11841834-11841914 7.75e-01 80 chrIV:6156988-6157068 7.29e-01 80 chrX:7236878-7236958 2.08e-01 80 chrIII:4905573-4905653 9.56e-01 80 chrIII:3650848-3650928 9.42e-03 80 chrIV:9797498-9797578 8.54e-05 37_[+3(1.66e-05)]_20_[+1(3.59e-05)]_\ 7 chrII:9012043-9012123 6.61e-01 80 chrIV:1496108-1496188 9.89e-02 17_[+2(2.56e-05)]_55 chrV:13551747-13551827 6.01e-01 80 chrV:20704144-20704224 1.41e-01 6_[+2(3.03e-05)]_66 chrV:16022767-16022847 8.01e-04 35_[+3(3.07e-05)]_[+3(3.07e-05)]_15_\ [+1(3.59e-05)]_6 chrIV:7101234-7101314 8.77e-01 80 chrII:7339173-7339253 6.31e-01 80 chrIII:235309-235389 1.90e-02 34_[+2(1.57e-05)]_38 chrI:5659101-5659181 6.33e-04 43_[+3(1.66e-05)]_20_[+1(3.59e-05)]_\ 1 chrIV:2987048-2987128 4.03e-03 45_[+1(3.59e-05)]_27 chrV:8570019-8570099 2.09e-02 34_[+2(2.56e-05)]_38 chrV:9094389-9094469 9.97e-02 80 chrII:6821377-6821457 9.29e-01 80 chrII:12914873-12914953 3.68e-06 25_[+1(1.67e-05)]_[+4(1.48e-05)]_39 chrIV:1309984-1310064 1.05e-01 80 chrV:13591643-13591723 6.23e-05 64_[+4(1.48e-05)]_8 chrII:7888909-7888989 6.64e-01 80 chrIII:3307545-3307625 4.16e-01 80 chrII:7327199-7327279 9.64e-02 80 chrV:18895149-18895229 8.56e-02 80 chrIV:11315050-11315130 4.26e-03 19_[+3(4.40e-05)]_53 chrI:5118925-5119005 2.12e-03 5_[+3(1.66e-05)]_31_[+1(3.59e-05)]_\ 28 chrIII:13296676-13296756 7.80e-02 13_[+3(6.84e-05)]_59 chrV:5842723-5842803 2.80e-01 80 chrIV:1953226-1953306 9.99e-01 80 chrII:2157697-2157777 8.25e-01 80 chrX:7798484-7798564 5.66e-03 38_[+3(6.84e-05)]_34 chrX:6639788-6639868 8.55e-01 80 chrX:4574617-4574697 7.95e-02 80 chrII:1085107-1085187 1.07e-03 34_[+5(2.92e-05)]_38 chrI:5025625-5025705 6.86e-01 80 chrIII:7560004-7560084 9.95e-01 80 chrV:14500847-14500927 2.47e-01 80 chrI:12227945-12228025 6.86e-01 80 chrX:6743020-6743100 6.83e-01 80 chrII:9262225-9262305 7.64e-02 80 chrX:2252472-2252552 5.84e-01 80 chrV:8652395-8652475 4.48e-01 80 chrX:12210556-12210636 8.83e-01 80 chrX:2457589-2457669 1.67e-01 80 chrIII:8631026-8631106 3.56e-01 80 chrII:10557431-10557511 3.73e-01 80 chrII:7714902-7714982 3.68e-01 80 chrI:11038929-11039009 1.55e-01 80 chrIV:11521088-11521168 1.37e-01 80 chrIV:6879074-6879154 8.12e-01 80 chrX:3788643-3788723 1.05e-01 80 chrI:2577093-2577173 7.52e-02 80 chrI:4433247-4433327 8.79e-02 71_[+2(6.84e-05)]_1 chrI:4671882-4671962 6.39e-01 80 chrX:4818455-4818535 6.58e-01 80 chrX:13170372-13170452 6.01e-01 80 chrIV:12209119-12209199 2.83e-03 18_[+5(9.06e-05)]_40_[+2(1.10e-05)]_\ 6 chrV:7804515-7804595 1.61e-01 67_[+5(9.06e-05)]_5 chrI:4299583-4299663 8.90e-01 80 chrX:9528033-9528113 3.47e-01 80 chrX:2709385-2709465 2.82e-02 55_[+5(9.06e-05)]_17 chrV:1285853-1285933 4.69e-01 80 chrIII:10882144-10882224 8.15e-02 80 chrV:10320334-10320414 1.20e-04 19_[+1(2.66e-05)]_8_[+1(6.92e-06)]_\ [+4(1.48e-05)]_29 chrI:2830383-2830463 4.63e-04 65_[+2(4.46e-05)]_7 chrX:7569807-7569887 2.27e-04 28_[+1(4.06e-05)]_2_[+3(1.66e-05)]_\ 34 chrX:5121958-5122038 5.09e-01 80 chrIV:5731766-5731846 2.22e-01 80 chrII:9177278-9177358 3.37e-01 80 chrIII:12528158-12528238 5.29e-01 80 chrV:9425713-9425793 3.11e-01 80 chrIII:13187915-13187995 3.13e-02 80 chrII:12800305-12800385 9.84e-02 80 chrIII:11719600-11719680 2.79e-02 22_[+2(2.56e-05)]_50 chrII:15089586-15089666 8.30e-06 22_[+1(3.59e-05)]_[+1(2.66e-05)]_\ [+4(2.93e-05)]_34 chrV:177051-177131 2.61e-03 26_[+2(1.57e-05)]_46 chrIV:9777713-9777793 1.02e-02 16_[+1(3.59e-05)]_56 chrIII:1558612-1558692 3.94e-01 80 chrIII:2151632-2151712 5.21e-01 80 chrV:13259631-13259711 3.78e-02 3_[+3(9.36e-05)]_69 chrI:2024733-2024813 9.61e-01 80 chrI:4201610-4201690 7.04e-01 80 chrV:14506866-14506946 9.98e-01 80 chrX:4588082-4588162 8.22e-02 38_[+2(2.56e-05)]_34 chrIII:8529065-8529145 1.78e-04 26_[+3(1.66e-05)]_12_[+1(6.92e-06)]_\ 26 chrX:15668930-15669010 1.47e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************