******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/hrde-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:11917821-11917901 1.0000 80 chrIV:5472221-5472301 1.0000 80 chrIII:10866660-10866740 1.0000 80 chrI:3028203-3028283 1.0000 80 chrIV:12084615-12084695 1.0000 80 chrI:9135726-9135806 1.0000 80 chrIII:5695011-5695091 1.0000 80 chrIII:9760340-9760420 1.0000 80 chrIII:6176357-6176437 1.0000 80 chrII:8159735-8159815 1.0000 80 chrIV:8514709-8514789 1.0000 80 chrV:8223590-8223670 1.0000 80 chrI:7255252-7255332 1.0000 80 chrII:11784411-11784491 1.0000 80 chrIV:8398008-8398088 1.0000 80 chrIV:8286517-8286597 1.0000 80 chrII:10242447-10242527 1.0000 80 chrV:12275883-12275963 1.0000 80 chrI:7832455-7832535 1.0000 80 chrIV:11323770-11323850 1.0000 80 chrI:2731623-2731703 1.0000 80 chrIII:13302746-13302826 1.0000 80 chrV:14460263-14460343 1.0000 80 chrII:5384460-5384540 1.0000 80 chrIV:11340944-11341024 1.0000 80 chrIV:6588478-6588558 1.0000 80 chrII:10574344-10574424 1.0000 80 chrII:8322453-8322533 1.0000 80 chrII:4696172-4696252 1.0000 80 chrV:6599335-6599415 1.0000 80 chrI:112405-112485 1.0000 80 chrIV:5548638-5548718 1.0000 80 chrI:7704480-7704560 1.0000 80 chrV:14420036-14420116 1.0000 80 chrV:1372586-1372666 1.0000 80 chrIV:7485741-7485821 1.0000 80 chrI:5815511-5815591 1.0000 80 chrI:14464747-14464827 1.0000 80 chrV:7779162-7779242 1.0000 80 chrIV:9320237-9320317 1.0000 80 chrIII:8969507-8969587 1.0000 80 chrV:5772665-5772745 1.0000 80 chrII:11130437-11130517 1.0000 80 chrIII:5203611-5203691 1.0000 80 chrIII:12870966-12871046 1.0000 80 chrI:11907370-11907450 1.0000 80 chrIII:4174253-4174333 1.0000 80 chrI:6464181-6464261 1.0000 80 chrIV:14799355-14799435 1.0000 80 chrIV:11401668-11401748 1.0000 80 chrIV:9696622-9696702 1.0000 80 chrIV:11603479-11603559 1.0000 80 chrV:4755447-4755527 1.0000 80 chrI:7318577-7318657 1.0000 80 chrIII:9225111-9225191 1.0000 80 chrIII:7170936-7171016 1.0000 80 chrIII:4759812-4759892 1.0000 80 chrV:18129008-18129088 1.0000 80 chrI:6798269-6798349 1.0000 80 chrII:10778223-10778303 1.0000 80 chrV:10659531-10659611 1.0000 80 chrV:13006954-13007034 1.0000 80 chrI:6468993-6469073 1.0000 80 chrIV:5811286-5811366 1.0000 80 chrII:11582869-11582949 1.0000 80 chrI:11527197-11527277 1.0000 80 chrIV:7543837-7543917 1.0000 80 chrIV:6121841-6121921 1.0000 80 chrI:5576911-5576991 1.0000 80 chrI:4920647-4920727 1.0000 80 chrX:9889523-9889603 1.0000 80 chrIII:7521679-7521759 1.0000 80 chrIV:9781462-9781542 1.0000 80 chrIII:9435119-9435199 1.0000 80 chrIV:17116538-17116618 1.0000 80 chrI:9660134-9660214 1.0000 80 chrII:11455844-11455924 1.0000 80 chrI:9516806-9516886 1.0000 80 chrI:4402120-4402200 1.0000 80 chrIII:8129419-8129499 1.0000 80 chrII:11259851-11259931 1.0000 80 chrV:7777284-7777364 1.0000 80 chrIV:6423512-6423592 1.0000 80 chrV:13309902-13309982 1.0000 80 chrI:8966796-8966876 1.0000 80 chrII:12923410-12923490 1.0000 80 chrI:5484597-5484677 1.0000 80 chrIV:7800523-7800603 1.0000 80 chrIV:7485994-7486074 1.0000 80 chrI:5171232-5171312 1.0000 80 chrV:12692277-12692357 1.0000 80 chrII:8066314-8066394 1.0000 80 chrI:3986832-3986912 1.0000 80 chrIII:6202611-6202691 1.0000 80 chrIV:9989627-9989707 1.0000 80 chrIV:10126545-10126625 1.0000 80 chrV:4169607-4169687 1.0000 80 chrIV:7312683-7312763 1.0000 80 chrI:3859103-3859183 1.0000 80 chrI:4135210-4135290 1.0000 80 chrI:3150292-3150372 1.0000 80 chrI:8815321-8815401 1.0000 80 chrIV:419881-419961 1.0000 80 chrIV:11123107-11123187 1.0000 80 chrI:9953321-9953401 1.0000 80 chrIV:12124839-12124919 1.0000 80 chrI:95064-95144 1.0000 80 chrII:11125188-11125268 1.0000 80 chrI:6517669-6517749 1.0000 80 chrI:9785567-9785647 1.0000 80 chrV:10021032-10021112 1.0000 80 chrIV:7558775-7558855 1.0000 80 chrI:2072679-2072759 1.0000 80 chrV:7814747-7814827 1.0000 80 chrIV:7551417-7551497 1.0000 80 chrI:3862532-3862612 1.0000 80 chrI:5123851-5123931 1.0000 80 chrI:3731220-3731300 1.0000 80 chrII:4229238-4229318 1.0000 80 chrV:9327056-9327136 1.0000 80 chrII:13014035-13014115 1.0000 80 chrIV:6905582-6905662 1.0000 80 chrI:2304132-2304212 1.0000 80 chrIII:6124179-6124259 1.0000 80 chrIV:11332861-11332941 1.0000 80 chrI:10085736-10085816 1.0000 80 chrIII:6471791-6471871 1.0000 80 chrI:368461-368541 1.0000 80 chrV:8563916-8563996 1.0000 80 chrIV:11561820-11561900 1.0000 80 chrIII:3069330-3069410 1.0000 80 chrIV:2919744-2919824 1.0000 80 chrV:14999730-14999810 1.0000 80 chrI:7238952-7239032 1.0000 80 chrIII:7209925-7210005 1.0000 80 chrIV:8901327-8901407 1.0000 80 chrV:12760820-12760900 1.0000 80 chrIII:8898457-8898537 1.0000 80 chrI:9514738-9514818 1.0000 80 chrII:5712322-5712402 1.0000 80 chrIV:10372864-10372944 1.0000 80 chrV:6367-6447 1.0000 80 chrI:14104560-14104640 1.0000 80 chrV:9927628-9927708 1.0000 80 chrIV:14953904-14953984 1.0000 80 chrI:6320439-6320519 1.0000 80 chrV:15397344-15397424 1.0000 80 chrII:6252929-6253009 1.0000 80 chrIV:11406139-11406219 1.0000 80 chrII:8280837-8280917 1.0000 80 chrIII:7571909-7571989 1.0000 80 chrX:14324351-14324431 1.0000 80 chrIII:13165304-13165384 1.0000 80 chrI:12906222-12906302 1.0000 80 chrV:14991656-14991736 1.0000 80 chrII:13522278-13522358 1.0000 80 chrII:11972454-11972534 1.0000 80 chrIII:9004682-9004762 1.0000 80 chrIV:359028-359108 1.0000 80 chrI:4759713-4759793 1.0000 80 chrI:4168869-4168949 1.0000 80 chrIII:10750134-10750214 1.0000 80 chrIII:5702151-5702231 1.0000 80 chrIV:4806445-4806525 1.0000 80 chrIII:4176399-4176479 1.0000 80 chrV:16744902-16744982 1.0000 80 chrIV:7925104-7925184 1.0000 80 chrIII:7824195-7824275 1.0000 80 chrIV:8188833-8188913 1.0000 80 chrIV:13510121-13510201 1.0000 80 chrIII:5717247-5717327 1.0000 80 chrIII:5680283-5680363 1.0000 80 chrIV:4047807-4047887 1.0000 80 chrIV:7488606-7488686 1.0000 80 chrI:12902757-12902837 1.0000 80 chrV:10023315-10023395 1.0000 80 chrV:8358071-8358151 1.0000 80 chrII:8326683-8326763 1.0000 80 chrV:11558150-11558230 1.0000 80 chrI:2297039-2297119 1.0000 80 chrII:101147-101227 1.0000 80 chrV:13175887-13175967 1.0000 80 chrIII:5730241-5730321 1.0000 80 chrIV:11407404-11407484 1.0000 80 chrV:17514004-17514084 1.0000 80 chrIII:7575417-7575497 1.0000 80 chrII:5509093-5509173 1.0000 80 chrI:6317365-6317445 1.0000 80 chrV:11990824-11990904 1.0000 80 chrIII:6210638-6210718 1.0000 80 chrII:577728-577808 1.0000 80 chrV:5722129-5722209 1.0000 80 chrIII:6963585-6963665 1.0000 80 chrIV:5265162-5265242 1.0000 80 chrIII:4476992-4477072 1.0000 80 chrI:1341320-1341400 1.0000 80 chrII:7866236-7866316 1.0000 80 chrIII:8071814-8071894 1.0000 80 chrII:10870717-10870797 1.0000 80 chrIII:7058336-7058416 1.0000 80 chrIII:7773817-7773897 1.0000 80 chrI:10331825-10331905 1.0000 80 chrII:14256035-14256115 1.0000 80 chrIV:386858-386938 1.0000 80 chrII:12208866-12208946 1.0000 80 chrIII:4914075-4914155 1.0000 80 chrIV:5544871-5544951 1.0000 80 chrIV:8294691-8294771 1.0000 80 chrV:14277828-14277908 1.0000 80 chrIV:9739248-9739328 1.0000 80 chrIII:4093161-4093241 1.0000 80 chrIII:5588881-5588961 1.0000 80 chrI:3682657-3682737 1.0000 80 chrIII:5480024-5480104 1.0000 80 chrII:11977629-11977709 1.0000 80 chrIII:2788127-2788207 1.0000 80 chrIII:8450743-8450823 1.0000 80 chrI:6857546-6857626 1.0000 80 chrIV:13096835-13096915 1.0000 80 chrIII:7101987-7102067 1.0000 80 chrI:5182785-5182865 1.0000 80 chrII:6478209-6478289 1.0000 80 chrII:6201740-6201820 1.0000 80 chrII:10657880-10657960 1.0000 80 chrII:11094850-11094930 1.0000 80 chrI:9630884-9630964 1.0000 80 chrII:8939074-8939154 1.0000 80 chrI:7585871-7585951 1.0000 80 chrIV:12570682-12570762 1.0000 80 chrIV:8399973-8400053 1.0000 80 chrIII:10209831-10209911 1.0000 80 chrIV:4388984-4389064 1.0000 80 chrII:12736712-12736792 1.0000 80 chrIII:9814362-9814442 1.0000 80 chrIII:8013794-8013874 1.0000 80 chrIII:12974771-12974851 1.0000 80 chrI:509130-509210 1.0000 80 chrI:5103336-5103416 1.0000 80 chrIII:7855746-7855826 1.0000 80 chrV:4349825-4349905 1.0000 80 chrIV:5473349-5473429 1.0000 80 chrIV:11482458-11482538 1.0000 80 chrIV:4748919-4748999 1.0000 80 chrI:3789130-3789210 1.0000 80 chrIV:6421157-6421237 1.0000 80 chrIII:4208444-4208524 1.0000 80 chrIV:6974299-6974379 1.0000 80 chrII:4703169-4703249 1.0000 80 chrI:10569277-10569357 1.0000 80 chrIII:5953387-5953467 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_hrde-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/hrde-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.311 C 0.19 G 0.188 T 0.311 Background letter frequencies (from file dataset with add-one prior applied): A 0.311 C 0.19 G 0.188 T 0.311 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CGKCTCCG MEME-1 width = 8 sites = 17 llr = 157 E-value = 2.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGKCTCCG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :1::2::: pos.-specific C 9::8:aa: probability G 18611::9 matrix T :2417::1 bits 2.4 ** 2.2 * ** 1.9 * *** 1.7 * *** Relative 1.4 * *** Entropy 1.2 **** *** (13.3 bits) 1.0 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGCTCCG consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGKCTCCG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:14953904-14953984 44 2.69e-06 AAGACTGGTT CGGCTCCG ACGTGGCTCT chrI:11527197-11527277 11 2.69e-06 GGCCCACCAC CGGCTCCG CCAGCTTCAT chrIV:6974299-6974379 56 9.84e-06 ACCAATCATT CGGCACCG TCGATTCAGA chrI:3682657-3682737 33 9.84e-06 cagaacttag cgtctccg taataCTTGC chrIII:7824195-7824275 17 9.84e-06 CCACTCATGA CGTCTCCG TCTCTACAAT chrV:17514004-17514084 44 1.25e-05 TGCGCTGGTT CGGGTCCG CGGGGTGGTG chrIII:5717247-5717327 4 1.70e-05 GAC CTGCTCCG CCCTCCATCT chrII:10242447-10242527 19 1.70e-05 AGTAGGTCCG CTGCTCCG CGGAGTGCCC chrII:11972454-11972534 71 2.30e-05 CTGCCGACCT CGTCACCG GC chrII:10657880-10657960 25 2.75e-05 AGAATGCAAC CGGTTCCG GGAGGTTTAT chrII:11582869-11582949 17 3.01e-05 GTTTGATAAG GGGCTCCG TGGGAGCACT chrIII:3069330-3069410 27 3.72e-05 CAAGATCTCA CGTGTCCG CCTTCTCAAA chrIV:13096835-13096915 52 5.62e-05 TTGAAGGATT CGTCGCCG CTTTCATGGA chrIV:386858-386938 56 5.62e-05 AGCCAGAGCA CAGCTCCG TAAGTTTCAT chrII:12736712-12736792 56 6.06e-05 CCTCGCCAGT CGGCTCCT CTCTGCCACG chrI:95064-95144 47 7.23e-05 TTAATGGGTT CGGTACCG CTGAAAAGTT chrII:11130437-11130517 26 9.99e-05 TATGCCAACT CTTCACCG ACACCTTCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGKCTCCG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:14953904-14953984 2.7e-06 43_[+1]_29 chrI:11527197-11527277 2.7e-06 10_[+1]_62 chrIV:6974299-6974379 9.8e-06 55_[+1]_17 chrI:3682657-3682737 9.8e-06 32_[+1]_40 chrIII:7824195-7824275 9.8e-06 16_[+1]_56 chrV:17514004-17514084 1.3e-05 43_[+1]_29 chrIII:5717247-5717327 1.7e-05 3_[+1]_69 chrII:10242447-10242527 1.7e-05 18_[+1]_54 chrII:11972454-11972534 2.3e-05 70_[+1]_2 chrII:10657880-10657960 2.7e-05 24_[+1]_48 chrII:11582869-11582949 3e-05 16_[+1]_56 chrIII:3069330-3069410 3.7e-05 26_[+1]_46 chrIV:13096835-13096915 5.6e-05 51_[+1]_21 chrIV:386858-386938 5.6e-05 55_[+1]_17 chrII:12736712-12736792 6.1e-05 55_[+1]_17 chrI:95064-95144 7.2e-05 46_[+1]_26 chrII:11130437-11130517 0.0001 25_[+1]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGKCTCCG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGKCTCCG width=8 seqs=17 chrIV:14953904-14953984 ( 44) CGGCTCCG 1 chrI:11527197-11527277 ( 11) CGGCTCCG 1 chrIV:6974299-6974379 ( 56) CGGCACCG 1 chrI:3682657-3682737 ( 33) CGTCTCCG 1 chrIII:7824195-7824275 ( 17) CGTCTCCG 1 chrV:17514004-17514084 ( 44) CGGGTCCG 1 chrIII:5717247-5717327 ( 4) CTGCTCCG 1 chrII:10242447-10242527 ( 19) CTGCTCCG 1 chrII:11972454-11972534 ( 71) CGTCACCG 1 chrII:10657880-10657960 ( 25) CGGTTCCG 1 chrII:11582869-11582949 ( 17) GGGCTCCG 1 chrIII:3069330-3069410 ( 27) CGTGTCCG 1 chrIV:13096835-13096915 ( 52) CGTCGCCG 1 chrIV:386858-386938 ( 56) CAGCTCCG 1 chrII:12736712-12736792 ( 56) CGGCTCCT 1 chrI:95064-95144 ( 47) CGGTACCG 1 chrII:11130437-11130517 ( 26) CTTCACCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGKCTCCG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8333 E= 2.5e+003 -1073 230 -167 -1073 -240 -1073 203 -82 -1073 -1073 179 18 -1073 200 -67 -140 -40 -1073 -167 118 -1073 239 -1073 -1073 -1073 239 -1073 -1073 -1073 -1073 233 -240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGKCTCCG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.5e+003 0.000000 0.941176 0.058824 0.000000 0.058824 0.000000 0.764706 0.176471 0.000000 0.000000 0.647059 0.352941 0.000000 0.764706 0.117647 0.117647 0.235294 0.000000 0.058824 0.705882 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.941176 0.058824 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGKCTCCG MEME-1 regular expression -------------------------------------------------------------------------------- CG[GT]C[TA]CCG -------------------------------------------------------------------------------- Time 5.56 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCCTTT MEME-2 width = 8 sites = 10 llr = 103 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::3::: pos.-specific C 1a:a7:2: probability G 9:a::::: matrix T :::::a8a bits 2.4 *** 2.2 *** 1.9 **** 1.7 **** * * Relative 1.4 **** * * Entropy 1.2 ******** (14.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCTTT consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:2788127-2788207 60 7.29e-06 gaagagggat gcgccttt aaaaagtact chrI:6317365-6317445 38 7.29e-06 AAAATTGTCT GCGCCTTT AATCTGGACT chrII:11972454-11972534 25 7.29e-06 CTCCGAATTC GCGCCTTT CTGCGATTTC chrII:13014035-13014115 16 7.29e-06 aaaatcccat gcgccttt aaataggcaa chrV:13309902-13309982 8 7.29e-06 aatgtgt gcgccttt gagtagtact chrII:11094850-11094930 42 1.17e-05 AACCAAAAAG GCGCCTCT CCATGTAGAG chrIII:9225111-9225191 50 2.37e-05 AATCGAAAGG GCGCATTT GAAATCTGCT chrI:7318577-7318657 18 2.37e-05 TGAATGACGG GCGCATTT CAGCGAATCC chrV:8563916-8563996 73 3.11e-05 AGGTTGTGGA CCGCCTTT chrII:12736712-12736792 17 3.83e-05 TCTTCATTTT GCGCATCT CCTTATCCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:2788127-2788207 7.3e-06 59_[+2]_13 chrI:6317365-6317445 7.3e-06 37_[+2]_35 chrII:11972454-11972534 7.3e-06 24_[+2]_48 chrII:13014035-13014115 7.3e-06 15_[+2]_57 chrV:13309902-13309982 7.3e-06 7_[+2]_65 chrII:11094850-11094930 1.2e-05 41_[+2]_31 chrIII:9225111-9225191 2.4e-05 49_[+2]_23 chrI:7318577-7318657 2.4e-05 17_[+2]_55 chrV:8563916-8563996 3.1e-05 72_[+2] chrII:12736712-12736792 3.8e-05 16_[+2]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCTTT width=8 seqs=10 chrIII:2788127-2788207 ( 60) GCGCCTTT 1 chrI:6317365-6317445 ( 38) GCGCCTTT 1 chrII:11972454-11972534 ( 25) GCGCCTTT 1 chrII:13014035-13014115 ( 16) GCGCCTTT 1 chrV:13309902-13309982 ( 8) GCGCCTTT 1 chrII:11094850-11094930 ( 42) GCGCCTCT 1 chrIII:9225111-9225191 ( 50) GCGCATTT 1 chrI:7318577-7318657 ( 18) GCGCATTT 1 chrV:8563916-8563996 ( 73) CCGCCTTT 1 chrII:12736712-12736792 ( 17) GCGCATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0846 E= 1.9e+003 -997 -93 226 -997 -997 239 -997 -997 -997 -997 241 -997 -997 239 -997 -997 -5 188 -997 -997 -997 -997 -997 168 -997 7 -997 136 -997 -997 -997 168 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.9e+003 0.000000 0.100000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.300000 0.700000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCTTT MEME-2 regular expression -------------------------------------------------------------------------------- GCGC[CA]T[TC]T -------------------------------------------------------------------------------- Time 10.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTGGGAA MEME-3 width = 8 sites = 4 llr = 47 E-value = 5.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTGGGAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::aa pos.-specific C :::::::: probability G aa:aaa:: matrix T ::a::::: bits 2.4 ** *** 2.2 ** *** 1.9 ** *** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTGGGAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGGAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:17514004-17514084 58 7.06e-06 TCCGCGGGGT GGTGGGAA ATTTCTGACA chrI:14104560-14104640 9 7.06e-06 ATGTGATT GGTGGGAA GGGAATAGAA chrIV:6905582-6905662 33 7.06e-06 CGATTAGATT GGTGGGAA ATGTTAAAAA chrIV:6121841-6121921 14 7.06e-06 CATAGAAAAT GGTGGGAA AAAGGCACGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGGAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:17514004-17514084 7.1e-06 57_[+3]_15 chrI:14104560-14104640 7.1e-06 8_[+3]_64 chrIV:6905582-6905662 7.1e-06 32_[+3]_40 chrIV:6121841-6121921 7.1e-06 13_[+3]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGGAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTGGGAA width=8 seqs=4 chrV:17514004-17514084 ( 58) GGTGGGAA 1 chrI:14104560-14104640 ( 9) GGTGGGAA 1 chrIV:6905582-6905662 ( 33) GGTGGGAA 1 chrIV:6121841-6121921 ( 14) GGTGGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGGAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 5.2e+003 -865 -865 241 -865 -865 -865 241 -865 -865 -865 -865 168 -865 -865 241 -865 -865 -865 241 -865 -865 -865 241 -865 168 -865 -865 -865 168 -865 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGGAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 5.2e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGGAA MEME-3 regular expression -------------------------------------------------------------------------------- GGTGGGAA -------------------------------------------------------------------------------- Time 14.12 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCCGTCG MEME-4 width = 8 sites = 2 llr = 26 E-value = 1.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCCGTCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::aa::a: probability G aa::a::a matrix T :::::a:: bits 2.4 ***** ** 2.2 ***** ** 1.9 ***** ** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCCGTCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCGTCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:3862532-3862612 34 2.66e-06 TACCTCAACG GGCCGTCG CTTATTTATA chrV:7814747-7814827 4 2.66e-06 GGA GGCCGTCG TGGATCCTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCGTCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:3862532-3862612 2.7e-06 33_[+4]_39 chrV:7814747-7814827 2.7e-06 3_[+4]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCGTCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCCGTCG width=8 seqs=2 chrI:3862532-3862612 ( 34) GGCCGTCG 1 chrV:7814747-7814827 ( 4) GGCCGTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCGTCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 1.9e+004 -765 -765 241 -765 -765 -765 241 -765 -765 239 -765 -765 -765 239 -765 -765 -765 -765 241 -765 -765 -765 -765 168 -765 239 -765 -765 -765 -765 241 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCGTCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.9e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCGTCG MEME-4 regular expression -------------------------------------------------------------------------------- GGCCGTCG -------------------------------------------------------------------------------- Time 17.75 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCGCCG MEME-5 width = 8 sites = 2 llr = 27 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCGCCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aa:aa: probability G :a::a::a matrix T :::::::: bits 2.4 ******** 2.2 ******** 1.9 ******** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (19.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCCGCCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:10209831-10209911 31 1.65e-06 CTACTAAGCC CGCCGCCG CGAAGACGAA chrI:11527197-11527277 47 1.65e-06 TCTTCAGCTC CGCCGCCG GCCGCTTCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:10209831-10209911 1.6e-06 30_[+5]_42 chrI:11527197-11527277 1.6e-06 46_[+5]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCGCCG width=8 seqs=2 chrIII:10209831-10209911 ( 31) CGCCGCCG 1 chrI:11527197-11527277 ( 47) CGCCGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 1.2e+004 -765 239 -765 -765 -765 -765 241 -765 -765 239 -765 -765 -765 239 -765 -765 -765 -765 241 -765 -765 239 -765 -765 -765 239 -765 -765 -765 -765 241 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCCG MEME-5 regular expression -------------------------------------------------------------------------------- CGCCGCCG -------------------------------------------------------------------------------- Time 21.38 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:11917821-11917901 9.06e-01 80 chrIV:5472221-5472301 4.94e-01 80 chrIII:10866660-10866740 3.77e-01 80 chrI:3028203-3028283 2.61e-01 80 chrIV:12084615-12084695 9.98e-01 80 chrI:9135726-9135806 9.59e-01 80 chrIII:5695011-5695091 6.65e-01 80 chrIII:9760340-9760420 9.92e-01 80 chrIII:6176357-6176437 6.96e-01 80 chrII:8159735-8159815 3.03e-01 80 chrIV:8514709-8514789 4.68e-01 80 chrV:8223590-8223670 6.24e-01 80 chrI:7255252-7255332 5.58e-01 80 chrII:11784411-11784491 5.72e-01 80 chrIV:8398008-8398088 1.67e-01 80 chrIV:8286517-8286597 1.00e+00 80 chrII:10242447-10242527 8.53e-03 18_[+1(1.70e-05)]_54 chrV:12275883-12275963 5.28e-01 80 chrI:7832455-7832535 8.84e-01 80 chrIV:11323770-11323850 9.68e-01 80 chrI:2731623-2731703 2.98e-01 80 chrIII:13302746-13302826 1.00e+00 80 chrV:14460263-14460343 2.39e-01 80 chrII:5384460-5384540 6.98e-01 80 chrIV:11340944-11341024 1.00e+00 80 chrIV:6588478-6588558 5.67e-01 80 chrII:10574344-10574424 7.81e-01 80 chrII:8322453-8322533 6.15e-01 80 chrII:4696172-4696252 5.49e-01 80 chrV:6599335-6599415 9.50e-01 80 chrI:112405-112485 9.53e-01 80 chrIV:5548638-5548718 9.60e-01 80 chrI:7704480-7704560 9.99e-01 80 chrV:14420036-14420116 1.00e+00 80 chrV:1372586-1372666 8.40e-01 80 chrIV:7485741-7485821 1.06e-02 54_[+4(8.87e-05)]_18 chrI:5815511-5815591 1.00e+00 80 chrI:14464747-14464827 5.02e-01 80 chrV:7779162-7779242 9.74e-01 80 chrIV:9320237-9320317 2.28e-01 80 chrIII:8969507-8969587 4.45e-01 80 chrV:5772665-5772745 9.74e-01 80 chrII:11130437-11130517 1.32e-02 25_[+1(9.99e-05)]_47 chrIII:5203611-5203691 9.48e-01 80 chrIII:12870966-12871046 8.63e-01 80 chrI:11907370-11907450 4.83e-01 80 chrIII:4174253-4174333 2.53e-01 80 chrI:6464181-6464261 1.00e+00 80 chrIV:14799355-14799435 8.23e-01 80 chrIV:11401668-11401748 9.77e-01 80 chrIV:9696622-9696702 5.66e-02 80 chrIV:11603479-11603559 9.99e-01 80 chrV:4755447-4755527 3.43e-01 80 chrI:7318577-7318657 3.63e-02 17_[+2(2.37e-05)]_55 chrIII:9225111-9225191 8.19e-02 49_[+2(2.37e-05)]_23 chrIII:7170936-7171016 7.48e-01 80 chrIII:4759812-4759892 3.50e-01 80 chrV:18129008-18129088 9.76e-01 80 chrI:6798269-6798349 6.41e-02 80 chrII:10778223-10778303 8.78e-01 80 chrV:10659531-10659611 8.69e-01 80 chrV:13006954-13007034 6.01e-01 80 chrI:6468993-6469073 2.55e-01 80 chrIV:5811286-5811366 9.05e-01 80 chrII:11582869-11582949 6.97e-03 16_[+1(3.01e-05)]_56 chrI:11527197-11527277 4.97e-07 10_[+1(2.69e-06)]_28_[+5(1.65e-06)]_\ 26 chrIV:7543837-7543917 7.88e-01 80 chrIV:6121841-6121921 3.43e-02 13_[+3(7.06e-06)]_59 chrI:5576911-5576991 1.00e+00 80 chrI:4920647-4920727 9.95e-01 80 chrX:9889523-9889603 5.58e-01 80 chrIII:7521679-7521759 3.91e-01 80 chrIV:9781462-9781542 6.90e-01 80 chrIII:9435119-9435199 3.97e-01 80 chrIV:17116538-17116618 7.62e-02 80 chrI:9660134-9660214 2.47e-01 80 chrII:11455844-11455924 9.15e-01 80 chrI:9516806-9516886 9.41e-01 80 chrI:4402120-4402200 9.99e-01 80 chrIII:8129419-8129499 8.79e-01 80 chrII:11259851-11259931 4.33e-01 80 chrV:7777284-7777364 9.19e-01 80 chrIV:6423512-6423592 4.84e-01 80 chrV:13309902-13309982 4.84e-03 7_[+2(7.29e-06)]_65 chrI:8966796-8966876 9.78e-01 80 chrII:12923410-12923490 7.49e-01 80 chrI:5484597-5484677 3.34e-01 80 chrIV:7800523-7800603 9.53e-01 80 chrIV:7485994-7486074 4.90e-01 80 chrI:5171232-5171312 1.77e-01 80 chrV:12692277-12692357 8.41e-01 80 chrII:8066314-8066394 8.26e-01 80 chrI:3986832-3986912 6.28e-01 80 chrIII:6202611-6202691 9.29e-01 80 chrIV:9989627-9989707 5.68e-01 80 chrIV:10126545-10126625 6.68e-01 80 chrV:4169607-4169687 1.72e-01 80 chrIV:7312683-7312763 9.81e-01 80 chrI:3859103-3859183 9.96e-01 80 chrI:4135210-4135290 1.00e+00 80 chrI:3150292-3150372 9.14e-01 80 chrI:8815321-8815401 5.05e-01 80 chrIV:419881-419961 4.30e-01 80 chrIV:11123107-11123187 9.92e-01 80 chrI:9953321-9953401 9.79e-01 80 chrIV:12124839-12124919 5.70e-01 80 chrI:95064-95144 9.08e-02 46_[+1(7.23e-05)]_26 chrII:11125188-11125268 5.08e-01 80 chrI:6517669-6517749 6.08e-01 80 chrI:9785567-9785647 9.97e-01 80 chrV:10021032-10021112 7.55e-01 80 chrIV:7558775-7558855 8.18e-01 80 chrI:2072679-2072759 3.58e-01 80 chrV:7814747-7814827 2.41e-03 3_[+4(2.66e-06)]_69 chrIV:7551417-7551497 7.10e-01 80 chrI:3862532-3862612 1.78e-04 33_[+4(2.66e-06)]_39 chrI:5123851-5123931 9.36e-01 80 chrI:3731220-3731300 9.86e-01 80 chrII:4229238-4229318 9.79e-01 80 chrV:9327056-9327136 9.75e-01 80 chrII:13014035-13014115 1.29e-02 15_[+2(7.29e-06)]_57 chrIV:6905582-6905662 9.98e-02 32_[+3(7.06e-06)]_40 chrI:2304132-2304212 5.81e-02 80 chrIII:6124179-6124259 7.34e-01 80 chrIV:11332861-11332941 6.89e-01 80 chrI:10085736-10085816 6.52e-01 80 chrIII:6471791-6471871 3.27e-01 80 chrI:368461-368541 9.98e-01 80 chrV:8563916-8563996 7.54e-03 72_[+2(3.11e-05)] chrIV:11561820-11561900 8.01e-01 80 chrIII:3069330-3069410 1.07e-02 26_[+1(3.72e-05)]_46 chrIV:2919744-2919824 8.71e-01 80 chrV:14999730-14999810 4.09e-01 80 chrI:7238952-7239032 9.31e-01 80 chrIII:7209925-7210005 9.50e-01 80 chrIV:8901327-8901407 5.68e-01 80 chrV:12760820-12760900 3.71e-01 80 chrIII:8898457-8898537 4.20e-01 80 chrI:9514738-9514818 3.72e-01 80 chrII:5712322-5712402 4.17e-01 80 chrIV:10372864-10372944 9.50e-01 80 chrV:6367-6447 7.76e-03 80 chrI:14104560-14104640 1.15e-01 8_[+3(7.06e-06)]_64 chrV:9927628-9927708 3.41e-01 80 chrIV:14953904-14953984 4.48e-04 43_[+1(2.69e-06)]_29 chrI:6320439-6320519 1.57e-01 80 chrV:15397344-15397424 6.83e-02 80 chrII:6252929-6253009 4.19e-01 80 chrIV:11406139-11406219 6.73e-01 80 chrII:8280837-8280917 9.98e-01 80 chrIII:7571909-7571989 3.90e-01 80 chrX:14324351-14324431 6.27e-01 80 chrIII:13165304-13165384 7.15e-01 80 chrI:12906222-12906302 8.65e-01 80 chrV:14991656-14991736 8.00e-01 80 chrII:13522278-13522358 3.72e-01 80 chrII:11972454-11972534 2.90e-05 24_[+2(7.29e-06)]_38_[+1(2.30e-05)]_\ 2 chrIII:9004682-9004762 8.81e-01 80 chrIV:359028-359108 1.86e-01 80 chrI:4759713-4759793 5.36e-01 80 chrI:4168869-4168949 5.92e-01 80 chrIII:10750134-10750214 1.28e-01 12_[+4(8.87e-05)]_60 chrIII:5702151-5702231 6.49e-01 80 chrIV:4806445-4806525 4.81e-01 80 chrIII:4176399-4176479 8.45e-01 80 chrV:16744902-16744982 8.57e-01 80 chrIV:7925104-7925184 6.50e-01 80 chrIII:7824195-7824275 3.33e-03 16_[+1(9.84e-06)]_56 chrIV:8188833-8188913 9.81e-01 80 chrIV:13510121-13510201 1.17e-01 24_[+3(5.40e-05)]_48 chrIII:5717247-5717327 1.03e-02 3_[+1(1.70e-05)]_69 chrIII:5680283-5680363 4.49e-01 80 chrIV:4047807-4047887 3.26e-01 80 chrIV:7488606-7488686 1.34e-01 80 chrI:12902757-12902837 5.93e-01 80 chrV:10023315-10023395 6.56e-01 80 chrV:8358071-8358151 4.61e-01 80 chrII:8326683-8326763 1.07e-01 80 chrV:11558150-11558230 9.99e-01 80 chrI:2297039-2297119 7.95e-01 80 chrII:101147-101227 1.11e-02 80 chrV:13175887-13175967 4.32e-01 80 chrIII:5730241-5730321 9.40e-01 80 chrIV:11407404-11407484 3.11e-01 80 chrV:17514004-17514084 1.44e-04 43_[+1(1.25e-05)]_6_[+3(7.06e-06)]_\ 15 chrIII:7575417-7575497 7.69e-01 80 chrII:5509093-5509173 9.59e-01 80 chrI:6317365-6317445 1.59e-04 37_[+2(7.29e-06)]_35 chrV:11990824-11990904 8.54e-01 80 chrIII:6210638-6210718 9.89e-01 80 chrII:577728-577808 6.30e-01 80 chrV:5722129-5722209 6.04e-01 80 chrIII:6963585-6963665 1.00e+00 80 chrIV:5265162-5265242 9.18e-01 80 chrIII:4476992-4477072 7.36e-01 80 chrI:1341320-1341400 8.89e-01 80 chrII:7866236-7866316 9.99e-01 80 chrIII:8071814-8071894 1.88e-02 80 chrII:10870717-10870797 1.00e+00 80 chrIII:7058336-7058416 8.28e-01 80 chrIII:7773817-7773897 9.99e-01 80 chrI:10331825-10331905 1.33e-01 80 chrII:14256035-14256115 7.54e-01 80 chrIV:386858-386938 1.19e-01 55_[+1(5.62e-05)]_17 chrII:12208866-12208946 9.89e-01 80 chrIII:4914075-4914155 9.40e-01 80 chrIV:5544871-5544951 9.81e-01 80 chrIV:8294691-8294771 9.25e-01 80 chrV:14277828-14277908 8.36e-01 80 chrIV:9739248-9739328 9.95e-01 80 chrIII:4093161-4093241 9.98e-01 80 chrIII:5588881-5588961 7.94e-01 80 chrI:3682657-3682737 7.64e-03 32_[+1(9.84e-06)]_40 chrIII:5480024-5480104 6.13e-01 80 chrII:11977629-11977709 2.45e-01 80 chrIII:2788127-2788207 1.72e-02 59_[+2(7.29e-06)]_13 chrIII:8450743-8450823 7.70e-01 80 chrI:6857546-6857626 9.99e-01 80 chrIV:13096835-13096915 1.21e-03 51_[+1(5.62e-05)]_21 chrIII:7101987-7102067 3.99e-01 80 chrI:5182785-5182865 9.96e-01 80 chrII:6478209-6478289 8.00e-02 80 chrII:6201740-6201820 1.00e+00 80 chrII:10657880-10657960 1.84e-02 24_[+1(2.75e-05)]_48 chrII:11094850-11094930 4.99e-02 41_[+2(1.17e-05)]_31 chrI:9630884-9630964 9.94e-01 80 chrII:8939074-8939154 9.84e-01 80 chrI:7585871-7585951 9.70e-01 80 chrIV:12570682-12570762 1.00e-01 80 chrIV:8399973-8400053 2.52e-01 80 chrIII:10209831-10209911 5.79e-05 30_[+5(1.65e-06)]_42 chrIV:4388984-4389064 7.53e-01 80 chrII:12736712-12736792 1.98e-04 16_[+2(3.83e-05)]_31_[+1(6.06e-05)]_\ 17 chrIII:9814362-9814442 1.00e+00 80 chrIII:8013794-8013874 1.00e+00 80 chrIII:12974771-12974851 6.11e-01 80 chrI:509130-509210 9.81e-01 80 chrI:5103336-5103416 4.91e-01 80 chrIII:7855746-7855826 9.57e-01 80 chrV:4349825-4349905 4.69e-01 80 chrIV:5473349-5473429 4.59e-01 80 chrIV:11482458-11482538 8.50e-01 80 chrIV:4748919-4748999 4.22e-01 80 chrI:3789130-3789210 3.47e-01 80 chrIV:6421157-6421237 3.66e-02 80 chrIII:4208444-4208524 9.19e-01 80 chrIV:6974299-6974379 3.04e-03 55_[+1(9.84e-06)]_17 chrII:4703169-4703249 7.62e-01 80 chrI:10569277-10569357 6.07e-01 80 chrIII:5953387-5953467 8.43e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************