******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/hnd-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:5192-5272 1.0000 80 chrX:5056378-5056458 1.0000 80 chrI:11585439-11585519 1.0000 80 chrV:16699925-16700005 1.0000 80 chrI:12004890-12004970 1.0000 80 chrI:933475-933555 1.0000 80 chrM:9999-10079 1.0000 80 chrII:2570624-2570704 1.0000 80 chrV:9088872-9088952 1.0000 80 chrII:14408039-14408119 1.0000 80 chrIII:931568-931648 1.0000 80 chrX:8603155-8603235 1.0000 80 chrM:9709-9789 1.0000 80 chrI:11609195-11609275 1.0000 80 chrI:11584757-11584837 1.0000 80 chrM:10829-10909 1.0000 80 chrM:2992-3072 1.0000 80 chrM:3612-3692 1.0000 80 chrIV:15289636-15289716 1.0000 80 chrIII:3499999-3500079 1.0000 80 chrIV:14013849-14013929 1.0000 80 chrM:8220-8300 1.0000 80 chrI:12093762-12093842 1.0000 80 chrI:6135800-6135880 1.0000 80 chrI:6051182-6051262 1.0000 80 chrM:7248-7328 1.0000 80 chrX:8638911-8638991 1.0000 80 chrV:12510083-12510163 1.0000 80 chrI:11579701-11579781 1.0000 80 chrX:16602615-16602695 1.0000 80 chrM:9100-9180 1.0000 80 chrIV:11071072-11071152 1.0000 80 chrM:6040-6120 1.0000 80 chrM:1049-1129 1.0000 80 chrX:3994565-3994645 1.0000 80 chrI:9249361-9249441 1.0000 80 chrIII:9104229-9104309 1.0000 80 chrX:8624222-8624302 1.0000 80 chrI:8369759-8369839 1.0000 80 chrI:4175997-4176077 1.0000 80 chrV:19723066-19723146 1.0000 80 chrI:11978764-11978844 1.0000 80 chrIII:6805608-6805688 1.0000 80 chrIV:14576634-14576714 1.0000 80 chrV:15554002-15554082 1.0000 80 chrM:2149-2229 1.0000 80 chrV:265631-265711 1.0000 80 chrM:4606-4686 1.0000 80 chrM:1249-1329 1.0000 80 chrX:9024431-9024511 1.0000 80 chrX:14228941-14229021 1.0000 80 chrI:12225446-12225526 1.0000 80 chrX:12338031-12338111 1.0000 80 chrI:6136596-6136676 1.0000 80 chrX:3914477-3914557 1.0000 80 chrIV:1687238-1687318 1.0000 80 chrIII:4428985-4429065 1.0000 80 chrI:12229337-12229417 1.0000 80 chrI:8307654-8307734 1.0000 80 chrX:3348015-3348095 1.0000 80 chrX:16944110-16944190 1.0000 80 chrI:12008206-12008286 1.0000 80 chrI:4132285-4132365 1.0000 80 chrIV:5371033-5371113 1.0000 80 chrIII:4542508-4542588 1.0000 80 chrI:7527048-7527128 1.0000 80 chrX:13653732-13653812 1.0000 80 chrV:14689530-14689610 1.0000 80 chrII:6565217-6565297 1.0000 80 chrI:1575691-1575771 1.0000 80 chrX:5407415-5407495 1.0000 80 chrI:11788252-11788332 1.0000 80 chrIII:3664418-3664498 1.0000 80 chrX:12890293-12890373 1.0000 80 chrIII:10432252-10432332 1.0000 80 chrIII:8650353-8650433 1.0000 80 chrIV:16684400-16684480 1.0000 80 chrX:11666775-11666855 1.0000 80 chrV:19519625-19519705 1.0000 80 chrX:8944279-8944359 1.0000 80 chrX:16271313-16271393 1.0000 80 chrV:3098923-3099003 1.0000 80 chrIV:842755-842835 1.0000 80 chrI:11911015-11911095 1.0000 80 chrV:7231024-7231104 1.0000 80 chrI:7550408-7550488 1.0000 80 chrI:2487849-2487929 1.0000 80 chrX:8818041-8818121 1.0000 80 chrIII:2314943-2315023 1.0000 80 chrI:11675615-11675695 1.0000 80 chrII:3567748-3567828 1.0000 80 chrIV:15059343-15059423 1.0000 80 chrIV:385241-385321 1.0000 80 chrI:11803278-11803358 1.0000 80 chrX:13415147-13415227 1.0000 80 chrI:11746858-11746938 1.0000 80 chrII:4238066-4238146 1.0000 80 chrIII:7642174-7642254 1.0000 80 chrI:1175827-1175907 1.0000 80 chrII:8716534-8716614 1.0000 80 chrII:8790285-8790365 1.0000 80 chrIV:5334707-5334787 1.0000 80 chrI:14606050-14606130 1.0000 80 chrII:7001603-7001683 1.0000 80 chrM:12417-12497 1.0000 80 chrX:9296751-9296831 1.0000 80 chrX:14115652-14115732 1.0000 80 chrIII:3249183-3249263 1.0000 80 chrX:8156137-8156217 1.0000 80 chrV:3587775-3587855 1.0000 80 chrIII:12673504-12673584 1.0000 80 chrI:8333082-8333162 1.0000 80 chrIII:10857002-10857082 1.0000 80 chrI:14708109-14708189 1.0000 80 chrX:4789105-4789185 1.0000 80 chrIII:7030553-7030633 1.0000 80 chrI:9141749-9141829 1.0000 80 chrI:12044175-12044255 1.0000 80 chrII:5772918-5772998 1.0000 80 chrII:3267925-3268005 1.0000 80 chrI:9268982-9269062 1.0000 80 chrIV:2802352-2802432 1.0000 80 chrI:11670262-11670342 1.0000 80 chrII:5836509-5836589 1.0000 80 chrIII:1824647-1824727 1.0000 80 chrX:8925608-8925688 1.0000 80 chrII:3439413-3439493 1.0000 80 chrIII:3476405-3476485 1.0000 80 chrIII:8653053-8653133 1.0000 80 chrX:16928284-16928364 1.0000 80 chrIII:640579-640659 1.0000 80 chrV:12331940-12332020 1.0000 80 chrV:14855809-14855889 1.0000 80 chrIV:16776048-16776128 1.0000 80 chrI:11505524-11505604 1.0000 80 chrIII:9051286-9051366 1.0000 80 chrII:7708729-7708809 1.0000 80 chrI:6757136-6757216 1.0000 80 chrIII:11236951-11237031 1.0000 80 chrV:16553140-16553220 1.0000 80 chrX:14504391-14504471 1.0000 80 chrIII:343808-343888 1.0000 80 chrV:2674001-2674081 1.0000 80 chrIV:16863626-16863706 1.0000 80 chrV:265404-265484 1.0000 80 chrI:10026039-10026119 1.0000 80 chrI:4633663-4633743 1.0000 80 chrIII:5769873-5769953 1.0000 80 chrIII:3175131-3175211 1.0000 80 chrX:8646451-8646531 1.0000 80 chrIV:16995552-16995632 1.0000 80 chrIV:11928524-11928604 1.0000 80 chrIII:13225182-13225262 1.0000 80 chrX:10148631-10148711 1.0000 80 chrX:8386175-8386255 1.0000 80 chrIII:3916783-3916863 1.0000 80 chrV:18723741-18723821 1.0000 80 chrIV:16399169-16399249 1.0000 80 chrX:12367637-12367717 1.0000 80 chrI:3873915-3873995 1.0000 80 chrII:6898169-6898249 1.0000 80 chrI:7094973-7095053 1.0000 80 chrIII:535352-535432 1.0000 80 chrII:6859062-6859142 1.0000 80 chrV:14524326-14524406 1.0000 80 chrIV:2805595-2805675 1.0000 80 chrX:10821338-10821418 1.0000 80 chrX:7794391-7794471 1.0000 80 chrIII:4426850-4426930 1.0000 80 chrIII:8106633-8106713 1.0000 80 chrI:11578305-11578385 1.0000 80 chrI:9605754-9605834 1.0000 80 chrIII:4947376-4947456 1.0000 80 chrX:8969676-8969756 1.0000 80 chrV:8235439-8235519 1.0000 80 chrI:11323358-11323438 1.0000 80 chrX:9622826-9622906 1.0000 80 chrX:14804848-14804928 1.0000 80 chrIV:11310772-11310852 1.0000 80 chrX:4444195-4444275 1.0000 80 chrIV:1388248-1388328 1.0000 80 chrX:13781580-13781660 1.0000 80 chrII:12042367-12042447 1.0000 80 chrI:7872258-7872338 1.0000 80 chrI:1415935-1416015 1.0000 80 chrI:1823198-1823278 1.0000 80 chrII:6248653-6248733 1.0000 80 chrX:2885468-2885548 1.0000 80 chrIV:16498181-16498261 1.0000 80 chrI:7084524-7084604 1.0000 80 chrV:12780430-12780510 1.0000 80 chrII:3521487-3521567 1.0000 80 chrIII:10624733-10624813 1.0000 80 chrV:15551823-15551903 1.0000 80 chrII:5293395-5293475 1.0000 80 chrX:5319404-5319484 1.0000 80 chrX:16930876-16930956 1.0000 80 chrI:10927484-10927564 1.0000 80 chrI:14721596-14721676 1.0000 80 chrIII:1218397-1218477 1.0000 80 chrIV:3524817-3524897 1.0000 80 chrII:11157800-11157880 1.0000 80 chrII:11756783-11756863 1.0000 80 chrX:8971586-8971666 1.0000 80 chrX:1880843-1880923 1.0000 80 chrV:4731526-4731606 1.0000 80 chrX:11252618-11252698 1.0000 80 chrI:7866262-7866342 1.0000 80 chrX:5707980-5708060 1.0000 80 chrIV:9191339-9191419 1.0000 80 chrIII:1122427-1122507 1.0000 80 chrII:6721704-6721784 1.0000 80 chrV:13962192-13962272 1.0000 80 chrX:11935120-11935200 1.0000 80 chrIV:14225125-14225205 1.0000 80 chrV:9583080-9583160 1.0000 80 chrII:5577256-5577336 1.0000 80 chrX:6903145-6903225 1.0000 80 chrIII:1604744-1604824 1.0000 80 chrV:20694175-20694255 1.0000 80 chrIII:8971790-8971870 1.0000 80 chrX:6220015-6220095 1.0000 80 chrIII:1601613-1601693 1.0000 80 chrIII:12399873-12399953 1.0000 80 chrIV:620456-620536 1.0000 80 chrII:7756941-7757021 1.0000 80 chrII:6741549-6741629 1.0000 80 chrI:8530167-8530247 1.0000 80 chrI:6252936-6253016 1.0000 80 chrIV:11026161-11026241 1.0000 80 chrX:1837830-1837910 1.0000 80 chrIV:16400923-16401003 1.0000 80 chrV:11239331-11239411 1.0000 80 chrII:14635279-14635359 1.0000 80 chrI:488417-488497 1.0000 80 chrX:9637839-9637919 1.0000 80 chrII:9566206-9566286 1.0000 80 chrII:11959386-11959466 1.0000 80 chrX:10132647-10132727 1.0000 80 chrIII:4568714-4568794 1.0000 80 chrIV:16865668-16865748 1.0000 80 chrIV:9477714-9477794 1.0000 80 chrIII:8768060-8768140 1.0000 80 chrI:1444145-1444225 1.0000 80 chrIII:6887750-6887830 1.0000 80 chrI:2410092-2410172 1.0000 80 chrX:16604764-16604844 1.0000 80 chrX:9091594-9091674 1.0000 80 chrI:11517274-11517354 1.0000 80 chrIII:4171146-4171226 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_hnd-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/hnd-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.251 C 0.244 G 0.242 T 0.262 Background letter frequencies (from file dataset with add-one prior applied): A 0.251 C 0.244 G 0.242 T 0.262 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCGAACCC MEME-1 width = 8 sites = 32 llr = 292 E-value = 1.5e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a9::2 pos.-specific C :9:::997 probability G ::a:1::: matrix T a1:::111 bits 2.0 ** 1.8 * ** 1.6 **** ** 1.4 ******* Relative 1.2 ******* Entropy 1.0 ******* (13.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGAACCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:14635279-14635359 71 1.42e-05 AGAGTGGGAT TCGAACCC AC chrII:11157800-11157880 17 1.42e-05 AATGCGGGGC TCGAACCC GCGACAACCA chrV:8235439-8235519 34 1.42e-05 AGAGTGGGAT TCGAACCC ACGCCCCCGG chrI:9605754-9605834 65 1.42e-05 CCGCGTAGGT TCGAACCC TGCTCGCT chrX:10821338-10821418 4 1.42e-05 GAA TCGAACCC GGGCCGCGTG chrX:12367637-12367717 20 1.42e-05 ATGCCGGGAA TCGAACCC GGGCCGCGTG chrX:16928284-16928364 2 1.42e-05 a tcgaaccc gggccgcccg chrII:5772918-5772998 13 1.42e-05 CGAGTGGGGT TCGAACCC ACGAGGTGTT chrII:3567748-3567828 31 1.42e-05 AATGCGGGGC TCGAACCC GCGACAACCA chrIII:8650353-8650433 43 1.42e-05 GAACCGGGAA TCGAACCC GGGACCTCTC chrIV:14576634-14576714 3 1.42e-05 AA TCGAACCC CCGTCGAATG chrI:11579701-11579781 20 1.42e-05 AATGCGGGGC TCGAACCC GCGACAACCA chrX:1837830-1837910 13 2.87e-05 GAAGAAAAAA TCGAACCA CGGTCTTGTG chrIII:10624733-10624813 24 2.87e-05 CATGCTGGAA TCGAACCA GCGACCTTCT chrII:3521487-3521567 15 2.87e-05 GCGGCTGGAA TCGAACCA GCGTCGCCAC chrV:12331940-12332020 40 2.87e-05 CCGGGTGGGC TCGAACCA CCAACCTTTC chrIII:7030553-7030633 19 2.87e-05 CATGCTGGAA TCGAACCA GCGACCTTCT chrX:16602615-16602695 34 2.87e-05 GGTGTGGGGG TCGAACCA TTAACCCCCC chrX:6220015-6220095 70 4.39e-05 ACGGCAGGAT TCGAACCT ACA chrX:10148631-10148711 33 4.39e-05 ACGGCAGGAT TCGAACCT ACAATCTTCT chrI:11803278-11803358 53 4.39e-05 TCAGCAGGAT TCGAACCT ACGCGGGCAG chrI:6136596-6136676 55 5.76e-05 TGTCGCGGGT TCGAGCCC CGCATTGGGC chrIII:6805608-6805688 14 5.76e-05 GGTTGGTGGT TCGAGCCC ACCCGGGAGC chrV:19723066-19723146 19 5.76e-05 GGTTGGTGGT TCGAGCCC ACCCGGGAGC chrX:9637839-9637919 28 7.28e-05 GTATGGGGAA TTGAACCC CAGCCCTCTC chrX:9622826-9622906 13 7.28e-05 GTATGGGGAA TTGAACCC CAGCCCTCTC chrX:12890293-12890373 7 7.28e-05 GGGGAA TTGAACCC CGGACTTCTC chrIV:3524817-3524897 56 1.03e-04 GATTGCAGGT TCGAATCC TGCCGTGGTC chrIV:11928524-11928604 13 1.03e-04 CCAGTCGACC TCGAACTC GAGGCAAGCA chrX:5407415-5407495 13 1.03e-04 CCGGTGAGGC TCGAACTC ACGACCTTCA chrV:14689530-14689610 67 1.03e-04 GGTCACTGGT TCGAATCC GGTTCG chrII:11959386-11959466 43 1.18e-04 GGCCGCCGGT TCGATCCC GGCCAGGACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:14635279-14635359 1.4e-05 70_[+1]_2 chrII:11157800-11157880 1.4e-05 16_[+1]_56 chrV:8235439-8235519 1.4e-05 33_[+1]_39 chrI:9605754-9605834 1.4e-05 64_[+1]_8 chrX:10821338-10821418 1.4e-05 3_[+1]_69 chrX:12367637-12367717 1.4e-05 19_[+1]_53 chrX:16928284-16928364 1.4e-05 1_[+1]_71 chrII:5772918-5772998 1.4e-05 12_[+1]_60 chrII:3567748-3567828 1.4e-05 30_[+1]_42 chrIII:8650353-8650433 1.4e-05 42_[+1]_30 chrIV:14576634-14576714 1.4e-05 2_[+1]_70 chrI:11579701-11579781 1.4e-05 19_[+1]_53 chrX:1837830-1837910 2.9e-05 12_[+1]_60 chrIII:10624733-10624813 2.9e-05 23_[+1]_49 chrII:3521487-3521567 2.9e-05 14_[+1]_58 chrV:12331940-12332020 2.9e-05 39_[+1]_33 chrIII:7030553-7030633 2.9e-05 18_[+1]_54 chrX:16602615-16602695 2.9e-05 33_[+1]_39 chrX:6220015-6220095 4.4e-05 69_[+1]_3 chrX:10148631-10148711 4.4e-05 32_[+1]_40 chrI:11803278-11803358 4.4e-05 52_[+1]_20 chrI:6136596-6136676 5.8e-05 54_[+1]_18 chrIII:6805608-6805688 5.8e-05 13_[+1]_59 chrV:19723066-19723146 5.8e-05 18_[+1]_54 chrX:9637839-9637919 7.3e-05 27_[+1]_45 chrX:9622826-9622906 7.3e-05 12_[+1]_60 chrX:12890293-12890373 7.3e-05 6_[+1]_66 chrIV:3524817-3524897 0.0001 55_[+1]_17 chrIV:11928524-11928604 0.0001 12_[+1]_60 chrX:5407415-5407495 0.0001 12_[+1]_60 chrV:14689530-14689610 0.0001 66_[+1]_6 chrII:11959386-11959466 0.00012 42_[+1]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAACCC width=8 seqs=32 chrII:14635279-14635359 ( 71) TCGAACCC 1 chrII:11157800-11157880 ( 17) TCGAACCC 1 chrV:8235439-8235519 ( 34) TCGAACCC 1 chrI:9605754-9605834 ( 65) TCGAACCC 1 chrX:10821338-10821418 ( 4) TCGAACCC 1 chrX:12367637-12367717 ( 20) TCGAACCC 1 chrX:16928284-16928364 ( 2) TCGAACCC 1 chrII:5772918-5772998 ( 13) TCGAACCC 1 chrII:3567748-3567828 ( 31) TCGAACCC 1 chrIII:8650353-8650433 ( 43) TCGAACCC 1 chrIV:14576634-14576714 ( 3) TCGAACCC 1 chrI:11579701-11579781 ( 20) TCGAACCC 1 chrX:1837830-1837910 ( 13) TCGAACCA 1 chrIII:10624733-10624813 ( 24) TCGAACCA 1 chrII:3521487-3521567 ( 15) TCGAACCA 1 chrV:12331940-12332020 ( 40) TCGAACCA 1 chrIII:7030553-7030633 ( 19) TCGAACCA 1 chrX:16602615-16602695 ( 34) TCGAACCA 1 chrX:6220015-6220095 ( 70) TCGAACCT 1 chrX:10148631-10148711 ( 33) TCGAACCT 1 chrI:11803278-11803358 ( 53) TCGAACCT 1 chrI:6136596-6136676 ( 55) TCGAGCCC 1 chrIII:6805608-6805688 ( 14) TCGAGCCC 1 chrV:19723066-19723146 ( 19) TCGAGCCC 1 chrX:9637839-9637919 ( 28) TTGAACCC 1 chrX:9622826-9622906 ( 13) TTGAACCC 1 chrX:12890293-12890373 ( 7) TTGAACCC 1 chrIV:3524817-3524897 ( 56) TCGAATCC 1 chrIV:11928524-11928604 ( 13) TCGAACTC 1 chrX:5407415-5407495 ( 13) TCGAACTC 1 chrV:14689530-14689610 ( 67) TCGAATCC 1 chrII:11959386-11959466 ( 43) TCGATCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.15308 E= 1.5e-011 -1164 -1164 -1164 193 -1164 189 -1164 -148 -1164 -1164 204 -1164 199 -1164 -1164 -1164 180 -1164 -137 -307 -1164 194 -1164 -207 -1164 194 -1164 -207 -42 156 -1164 -148 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.5e-011 0.000000 0.000000 0.000000 1.000000 0.000000 0.906250 0.000000 0.093750 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.093750 0.031250 0.000000 0.937500 0.000000 0.062500 0.000000 0.937500 0.000000 0.062500 0.187500 0.718750 0.000000 0.093750 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 regular expression -------------------------------------------------------------------------------- TCGAACCC -------------------------------------------------------------------------------- Time 8.72 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-2 width = 8 sites = 18 llr = 194 E-value = 2.1e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::::a: pos.-specific C :::a:a:: probability G ::a:1::a matrix T a:::9::: bits 2.0 *** *** 1.8 **** *** 1.6 **** *** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (15.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13781580-13781660 67 1.51e-05 GCCGCCCGGT TAGCTCAG TCGGTA chrX:14804848-14804928 36 1.51e-05 CACGGGGGTA TAGCTCAG TGGCAGAGCA chrIII:535352-535432 37 1.51e-05 GTGCCGTCGA TAGCTCAG TTGGTAGAGC chrIV:16399169-16399249 22 1.51e-05 TGCGGGGGTA TAGCTCAG TGGTAGAGCG chrI:11505524-11505604 34 1.51e-05 ATCGGGGGTA TAGCTCAG TGGCAGAGCA chrIII:8653053-8653133 9 1.51e-05 TGCCTCGA TAGCTCAG TTGGGAGAGC chrX:4789105-4789185 34 1.51e-05 TGGGCCTCCT TAGCTCAG TTGGTAGAGC chrII:7001603-7001683 31 1.51e-05 GTTACCTGTG TAGCTCAG GGGTAGAGCG chrII:6565217-6565297 38 1.51e-05 CTGGCCTCCT TAGCTCAG TTGGTAGAGC chrV:14689530-14689610 9 1.51e-05 GCCGTCGA TAGCTCAG TTGGTAGAGC chrX:13653732-13653812 3 1.51e-05 TA TAGCTCAG TGGTAGAGCG chrI:6136596-6136676 8 1.51e-05 GCCCGGT TAGCTCAG TCGGTAGAGC chrX:8624222-8624302 67 1.51e-05 TGTGGGGGTA TAGCTCAG TGGCAG chrX:8638911-8638991 18 1.51e-05 TGTGGGGGTA TAGCTCAG TGGCAGAGCA chrI:6135800-6135880 37 1.51e-05 GTGCCGTCGA TAGCTCAG TTGGTAGAGC chrI:11584757-11584837 37 1.51e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrIII:1122427-1122507 14 2.90e-05 TGTTGCCGTT TAGCGCAG GCGGGAGTGG chrIII:8106633-8106713 27 2.90e-05 GCCGCTTCCG TAGCGCAG TAGGCAGCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13781580-13781660 1.5e-05 66_[+2]_6 chrX:14804848-14804928 1.5e-05 35_[+2]_37 chrIII:535352-535432 1.5e-05 36_[+2]_36 chrIV:16399169-16399249 1.5e-05 21_[+2]_51 chrI:11505524-11505604 1.5e-05 33_[+2]_39 chrIII:8653053-8653133 1.5e-05 8_[+2]_64 chrX:4789105-4789185 1.5e-05 33_[+2]_39 chrII:7001603-7001683 1.5e-05 30_[+2]_42 chrII:6565217-6565297 1.5e-05 37_[+2]_35 chrV:14689530-14689610 1.5e-05 8_[+2]_64 chrX:13653732-13653812 1.5e-05 2_[+2]_70 chrI:6136596-6136676 1.5e-05 7_[+2]_65 chrX:8624222-8624302 1.5e-05 66_[+2]_6 chrX:8638911-8638991 1.5e-05 17_[+2]_55 chrI:6135800-6135880 1.5e-05 36_[+2]_36 chrI:11584757-11584837 1.5e-05 36_[+2]_36 chrIII:1122427-1122507 2.9e-05 13_[+2]_59 chrIII:8106633-8106713 2.9e-05 26_[+2]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=18 chrX:13781580-13781660 ( 67) TAGCTCAG 1 chrX:14804848-14804928 ( 36) TAGCTCAG 1 chrIII:535352-535432 ( 37) TAGCTCAG 1 chrIV:16399169-16399249 ( 22) TAGCTCAG 1 chrI:11505524-11505604 ( 34) TAGCTCAG 1 chrIII:8653053-8653133 ( 9) TAGCTCAG 1 chrX:4789105-4789185 ( 34) TAGCTCAG 1 chrII:7001603-7001683 ( 31) TAGCTCAG 1 chrII:6565217-6565297 ( 38) TAGCTCAG 1 chrV:14689530-14689610 ( 9) TAGCTCAG 1 chrX:13653732-13653812 ( 3) TAGCTCAG 1 chrI:6136596-6136676 ( 8) TAGCTCAG 1 chrX:8624222-8624302 ( 67) TAGCTCAG 1 chrX:8638911-8638991 ( 18) TAGCTCAG 1 chrI:6135800-6135880 ( 37) TAGCTCAG 1 chrI:11584757-11584837 ( 37) TAGCTCAG 1 chrIII:1122427-1122507 ( 14) TAGCGCAG 1 chrIII:8106633-8106713 ( 27) TAGCGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 2.1e-010 -1081 -1081 -1081 193 199 -1081 -1081 -1081 -1081 -1081 204 -1081 -1081 203 -1081 -1081 -1081 -1081 -112 176 -1081 203 -1081 -1081 199 -1081 -1081 -1081 -1081 -1081 204 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.1e-010 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 12.46 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGAGCTA MEME-3 width = 8 sites = 18 llr = 194 E-value = 2.1e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a:::a pos.-specific C a::::a1: probability G ::a:a::: matrix T :a::::9: bits 2.0 * **** * 1.8 ****** * 1.6 ****** * 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (15.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGAGCTA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6887750-6887830 36 1.51e-05 GCTCTACCAA CTGAGCTA AGGAGGCCAT chrX:9637839-9637919 70 1.51e-05 CGCTCTACCA CTGAGCTA TAC chrV:20694175-20694255 3 1.51e-05 CA CTGAGCTA TACCCCCACG chrX:11935120-11935200 17 1.51e-05 CGCTCTGCCA CTGAGCTA TACGGGCTAC chrII:11157800-11157880 60 1.51e-05 GCTCTACCGA CTGAGCTA ACCGGGCAGC chrIII:1218397-1218477 38 1.51e-05 CTCTAACCGA CTGAGCTA TGGCGGCACG chrX:5319404-5319484 39 1.51e-05 GCTCTCCCAA CTGAGCTA TTGAGGCAGA chrX:9622826-9622906 55 1.51e-05 CGCTCTACCA CTGAGCTA TACCCCCGCC chrV:14855809-14855889 35 1.51e-05 TGCTCTGCCA CTGAGCTA TACCCCCGAC chrII:3439413-3439493 39 1.51e-05 GCTCTACCGA CTGAGCTA ACCGGGCCCG chrX:13415147-13415227 32 1.51e-05 CTCTAACCGA CTGAGCTA TGGCGGCTGA chrX:12890293-12890373 49 1.51e-05 CGCTCTACCC CTGAGCTA TGCCCCCACA chrIII:4428985-4429065 25 1.51e-05 CGCTCTACCA CTGAGCTA TACCCCGACG chrX:9024431-9024511 39 1.51e-05 CGCTCTACCA CTGAGCTA TAAGGGCGAT chrI:11579701-11579781 63 1.51e-05 GCTCTACCGA CTGAGCTA ACCGGGCGGC chrIV:14013849-14013929 13 1.51e-05 CGCTCTACCC CTGAGCTA TACCCCCGGA chrIII:10624733-10624813 66 2.91e-05 CGCTCTGCCA CTGAGCCA ATGAGGC chrIII:7030553-7030633 61 2.91e-05 CGCTCTGCCA CTGAGCCA ATGAGGCGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6887750-6887830 1.5e-05 35_[+3]_37 chrX:9637839-9637919 1.5e-05 69_[+3]_3 chrV:20694175-20694255 1.5e-05 2_[+3]_70 chrX:11935120-11935200 1.5e-05 16_[+3]_56 chrII:11157800-11157880 1.5e-05 59_[+3]_13 chrIII:1218397-1218477 1.5e-05 37_[+3]_35 chrX:5319404-5319484 1.5e-05 38_[+3]_34 chrX:9622826-9622906 1.5e-05 54_[+3]_18 chrV:14855809-14855889 1.5e-05 34_[+3]_38 chrII:3439413-3439493 1.5e-05 38_[+3]_34 chrX:13415147-13415227 1.5e-05 31_[+3]_41 chrX:12890293-12890373 1.5e-05 48_[+3]_24 chrIII:4428985-4429065 1.5e-05 24_[+3]_48 chrX:9024431-9024511 1.5e-05 38_[+3]_34 chrI:11579701-11579781 1.5e-05 62_[+3]_10 chrIV:14013849-14013929 1.5e-05 12_[+3]_60 chrIII:10624733-10624813 2.9e-05 65_[+3]_7 chrIII:7030553-7030633 2.9e-05 60_[+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGAGCTA width=8 seqs=18 chrIII:6887750-6887830 ( 36) CTGAGCTA 1 chrX:9637839-9637919 ( 70) CTGAGCTA 1 chrV:20694175-20694255 ( 3) CTGAGCTA 1 chrX:11935120-11935200 ( 17) CTGAGCTA 1 chrII:11157800-11157880 ( 60) CTGAGCTA 1 chrIII:1218397-1218477 ( 38) CTGAGCTA 1 chrX:5319404-5319484 ( 39) CTGAGCTA 1 chrX:9622826-9622906 ( 55) CTGAGCTA 1 chrV:14855809-14855889 ( 35) CTGAGCTA 1 chrII:3439413-3439493 ( 39) CTGAGCTA 1 chrX:13415147-13415227 ( 32) CTGAGCTA 1 chrX:12890293-12890373 ( 49) CTGAGCTA 1 chrIII:4428985-4429065 ( 25) CTGAGCTA 1 chrX:9024431-9024511 ( 39) CTGAGCTA 1 chrI:11579701-11579781 ( 63) CTGAGCTA 1 chrIV:14013849-14013929 ( 13) CTGAGCTA 1 chrIII:10624733-10624813 ( 66) CTGAGCCA 1 chrIII:7030553-7030633 ( 61) CTGAGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 2.1e-010 -1081 203 -1081 -1081 -1081 -1081 -1081 193 -1081 -1081 204 -1081 199 -1081 -1081 -1081 -1081 -1081 204 -1081 -1081 203 -1081 -1081 -1081 -113 -1081 176 199 -1081 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.1e-010 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.888889 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-3 regular expression -------------------------------------------------------------------------------- CTGAGCTA -------------------------------------------------------------------------------- Time 16.05 secs. ******************************************************************************** ******************************************************************************** MOTIF RCTCYGCC MEME-4 width = 8 sites = 52 llr = 412 E-value = 1.4e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCTCYGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3::::3:: pos.-specific C :a:a3:aa probability G 5:3:27:: matrix T 2:7:5::: bits 2.0 * * ** 1.8 * * ** 1.6 * * ** 1.4 * * ** Relative 1.2 * * *** Entropy 1.0 *** *** (11.4 bits) 0.8 *** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTCTGCC consensus A G CA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTCYGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11935120-11935200 8 1.42e-05 GACAGAC GCTCTGCC ACTGAGCTAT chrX:8971586-8971666 60 1.42e-05 AATCAATTGG GCTCTGCC CGCGTAGGTT chrIII:10624733-10624813 57 1.42e-05 CTAGACAGAC GCTCTGCC ACTGAGCCAA chrV:14855809-14855889 26 1.42e-05 GCAGTCGAAT GCTCTGCC ACTGAGCTAT chrIII:7030553-7030633 52 1.42e-05 CTAGACAGAC GCTCTGCC ACTGAGCCAA chrIII:4171146-4171226 64 2.75e-05 TGCAAAGAAC GCTCCGCC CACAAACAT chrI:14606050-14606130 32 2.75e-05 GCACCCCCTG GCTCCGCC CATTTTTCTG chrII:4238066-4238146 57 2.75e-05 TTGCAACTTA GCTCCGCC CACCCTTTGA chrI:11911015-11911095 58 2.75e-05 TTGCGTTCGC GCTCCGCC CCCTTTAGTC chrIII:6887750-6887830 26 8.34e-05 AAAGTCTCAC GCTCTACC AACTGAGCTA chrX:9637839-9637919 61 8.34e-05 CTAAGGGAGC GCTCTACC ACTGAGCTAT chrX:6903145-6903225 35 8.34e-05 GCCTTAGACC GCTCGGCC ATCTCTCCAC chrII:11157800-11157880 50 8.34e-05 AGAGTCTGGT GCTCTACC GACTGAGCTA chrX:9622826-9622906 46 8.34e-05 CTAAGGGAGC GCTCTACC ACTGAGCTAT chrIII:13225182-13225262 28 8.34e-05 ACAGCCGAAC GCGCTGCC TATTGCGCCA chrV:12331940-12332020 73 8.34e-05 ACAGCCGAAC GCGCTGCC chrII:3439413-3439493 29 8.34e-05 AGAGTCTGGT GCTCTACC GACTGAGCTA chrII:3567748-3567828 64 8.34e-05 AGAGTCTGGT GCTCTACC GACTGAGCT chrX:12890293-12890373 40 8.34e-05 CGAAGCGAGC GCTCTACC CCTGAGCTAT chrX:5407415-5407495 46 8.34e-05 TGAGACTGAC GCGCTGCC TACTGCGCTA chrIII:4428985-4429065 16 8.34e-05 CTAAGGGAGC GCTCTACC ACTGAGCTAT chrX:9024431-9024511 30 8.34e-05 CAAGACCAAC GCTCTACC ACTGAGCTAT chrIII:9104229-9104309 26 8.34e-05 ACAGCCGAAC GCGCTGCC TATTGCGCCA chrI:11579701-11579781 53 8.34e-05 AGAGTCTGGT GCTCTACC GACTGAGCTA chrI:6051182-6051262 39 8.34e-05 GCCTTGGACC GCTCGGCC ATCTCTCCGA chrIV:14013849-14013929 4 8.34e-05 AGC GCTCTACC CCTGAGCTAT chrI:11323358-11323438 47 9.72e-05 CAATTGAGCC ACTCCGCC CCTTTTCTCT chrI:14708109-14708189 16 9.72e-05 AATTCTCCAA ACTCCGCC CATTTGCAAC chrV:3587775-3587855 58 9.72e-05 CGATTTCGCA ACTCCGCC GCACAGTTTT chrI:9249361-9249441 53 9.72e-05 CGGGGTTGAG ACTCCGCC CACCGCAAGG chrV:18723741-18723821 35 1.39e-04 TGCCATGTTT TCTCTGCC ACTCTCTCAC chrX:1837830-1837910 54 1.81e-04 CGCGCTCGCC ACTCGGCC GCGCAGGGCA chrIV:11928524-11928604 57 1.81e-04 GCCTTAGACC ACTCGGCC ATCCGTGCGT chrII:5772918-5772998 66 1.81e-04 CGCCTTAACC ACTCGGCC ATCGTGC chrIII:3664418-3664498 19 1.81e-04 GCATTTCGCA ACGCTGCC GCACGTAGTT chrI:14721596-14721676 5 2.35e-04 CGAG TCTCCGCC CCTTTGCAAT chrX:8944279-8944359 1 2.35e-04 . GCGCTACC ATTGCGCCAA chrI:4132285-4132365 33 2.35e-04 GCCGAGCAAG TCTCCGCC CACTTTAACC chrI:12008206-12008286 71 2.35e-04 GCAAAAGAGG TCTCCGCC CA chrX:14228941-14229021 27 2.35e-04 GGAGTCGAAC GCGCTACC ATTGCGCCAA chrI:11585439-11585519 8 2.35e-04 GGCCATC TCTCCGCC GGCGACTAAC chrI:11584757-11584837 25 2.62e-04 GTAAGAGTTA ACGCCGCC CGGTTAGCTC chrX:3994565-3994645 24 3.19e-04 CTATCTTTCG TCGCTGCC AACACGCGTT chrIV:15289636-15289716 21 3.19e-04 CTCTCCTTTC TCTCTACC CCTTTCGTGT chrX:11252618-11252698 37 3.60e-04 CCATTGCGCC ACGCGGCC ACACAGACTG chrII:6898169-6898249 65 3.60e-04 GTTTTCACCC ACGCGGCC CGGGTTCG chrIV:16995552-16995632 67 3.60e-04 TTCCACGGCC ACGCGGCC CCCACC chrX:8646451-8646531 69 3.60e-04 GTTTTCACCC ACGCGGCC CGGG chrX:12338031-12338111 32 3.60e-04 CCATTAGGCC ACGCGGCC ACATTTTTGT chrX:13781580-13781660 55 4.01e-04 TCACTCGCTA TCGCCGCC CGGTTAGCTC chrIII:8971790-8971870 55 4.14e-04 TCGCCACTTG ACGCCACC TCAATTTTTG chrX:6220015-6220095 52 4.57e-04 AAGCAAAAAG TCTCGACC ACGGCAGGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTCYGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11935120-11935200 1.4e-05 7_[+4]_65 chrX:8971586-8971666 1.4e-05 59_[+4]_13 chrIII:10624733-10624813 1.4e-05 56_[+4]_16 chrV:14855809-14855889 1.4e-05 25_[+4]_47 chrIII:7030553-7030633 1.4e-05 51_[+4]_21 chrIII:4171146-4171226 2.8e-05 63_[+4]_9 chrI:14606050-14606130 2.8e-05 31_[+4]_41 chrII:4238066-4238146 2.8e-05 56_[+4]_16 chrI:11911015-11911095 2.8e-05 57_[+4]_15 chrIII:6887750-6887830 8.3e-05 25_[+4]_47 chrX:9637839-9637919 8.3e-05 60_[+4]_12 chrX:6903145-6903225 8.3e-05 34_[+4]_38 chrII:11157800-11157880 8.3e-05 49_[+4]_23 chrX:9622826-9622906 8.3e-05 45_[+4]_27 chrIII:13225182-13225262 8.3e-05 27_[+4]_45 chrV:12331940-12332020 8.3e-05 72_[+4] chrII:3439413-3439493 8.3e-05 28_[+4]_44 chrII:3567748-3567828 8.3e-05 63_[+4]_9 chrX:12890293-12890373 8.3e-05 39_[+4]_33 chrX:5407415-5407495 8.3e-05 45_[+4]_27 chrIII:4428985-4429065 8.3e-05 15_[+4]_57 chrX:9024431-9024511 8.3e-05 29_[+4]_43 chrIII:9104229-9104309 8.3e-05 25_[+4]_47 chrI:11579701-11579781 8.3e-05 52_[+4]_20 chrI:6051182-6051262 8.3e-05 38_[+4]_34 chrIV:14013849-14013929 8.3e-05 3_[+4]_69 chrI:11323358-11323438 9.7e-05 46_[+4]_26 chrI:14708109-14708189 9.7e-05 15_[+4]_57 chrV:3587775-3587855 9.7e-05 57_[+4]_15 chrI:9249361-9249441 9.7e-05 52_[+4]_20 chrV:18723741-18723821 0.00014 34_[+4]_38 chrX:1837830-1837910 0.00018 53_[+4]_19 chrIV:11928524-11928604 0.00018 56_[+4]_16 chrII:5772918-5772998 0.00018 65_[+4]_7 chrIII:3664418-3664498 0.00018 18_[+4]_54 chrI:14721596-14721676 0.00024 4_[+4]_68 chrX:8944279-8944359 0.00024 [+4]_72 chrI:4132285-4132365 0.00024 32_[+4]_40 chrI:12008206-12008286 0.00024 70_[+4]_2 chrX:14228941-14229021 0.00024 26_[+4]_46 chrI:11585439-11585519 0.00024 7_[+4]_65 chrI:11584757-11584837 0.00026 24_[+4]_48 chrX:3994565-3994645 0.00032 23_[+4]_49 chrIV:15289636-15289716 0.00032 20_[+4]_52 chrX:11252618-11252698 0.00036 36_[+4]_36 chrII:6898169-6898249 0.00036 64_[+4]_8 chrIV:16995552-16995632 0.00036 66_[+4]_6 chrX:8646451-8646531 0.00036 68_[+4]_4 chrX:12338031-12338111 0.00036 31_[+4]_41 chrX:13781580-13781660 0.0004 54_[+4]_18 chrIII:8971790-8971870 0.00041 54_[+4]_18 chrX:6220015-6220095 0.00046 51_[+4]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTCYGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCTCYGCC width=8 seqs=52 chrX:11935120-11935200 ( 8) GCTCTGCC 1 chrX:8971586-8971666 ( 60) GCTCTGCC 1 chrIII:10624733-10624813 ( 57) GCTCTGCC 1 chrV:14855809-14855889 ( 26) GCTCTGCC 1 chrIII:7030553-7030633 ( 52) GCTCTGCC 1 chrIII:4171146-4171226 ( 64) GCTCCGCC 1 chrI:14606050-14606130 ( 32) GCTCCGCC 1 chrII:4238066-4238146 ( 57) GCTCCGCC 1 chrI:11911015-11911095 ( 58) GCTCCGCC 1 chrIII:6887750-6887830 ( 26) GCTCTACC 1 chrX:9637839-9637919 ( 61) GCTCTACC 1 chrX:6903145-6903225 ( 35) GCTCGGCC 1 chrII:11157800-11157880 ( 50) GCTCTACC 1 chrX:9622826-9622906 ( 46) GCTCTACC 1 chrIII:13225182-13225262 ( 28) GCGCTGCC 1 chrV:12331940-12332020 ( 73) GCGCTGCC 1 chrII:3439413-3439493 ( 29) GCTCTACC 1 chrII:3567748-3567828 ( 64) GCTCTACC 1 chrX:12890293-12890373 ( 40) GCTCTACC 1 chrX:5407415-5407495 ( 46) GCGCTGCC 1 chrIII:4428985-4429065 ( 16) GCTCTACC 1 chrX:9024431-9024511 ( 30) GCTCTACC 1 chrIII:9104229-9104309 ( 26) GCGCTGCC 1 chrI:11579701-11579781 ( 53) GCTCTACC 1 chrI:6051182-6051262 ( 39) GCTCGGCC 1 chrIV:14013849-14013929 ( 4) GCTCTACC 1 chrI:11323358-11323438 ( 47) ACTCCGCC 1 chrI:14708109-14708189 ( 16) ACTCCGCC 1 chrV:3587775-3587855 ( 58) ACTCCGCC 1 chrI:9249361-9249441 ( 53) ACTCCGCC 1 chrV:18723741-18723821 ( 35) TCTCTGCC 1 chrX:1837830-1837910 ( 54) ACTCGGCC 1 chrIV:11928524-11928604 ( 57) ACTCGGCC 1 chrII:5772918-5772998 ( 66) ACTCGGCC 1 chrIII:3664418-3664498 ( 19) ACGCTGCC 1 chrI:14721596-14721676 ( 5) TCTCCGCC 1 chrX:8944279-8944359 ( 1) GCGCTACC 1 chrI:4132285-4132365 ( 33) TCTCCGCC 1 chrI:12008206-12008286 ( 71) TCTCCGCC 1 chrX:14228941-14229021 ( 27) GCGCTACC 1 chrI:11585439-11585519 ( 8) TCTCCGCC 1 chrI:11584757-11584837 ( 25) ACGCCGCC 1 chrX:3994565-3994645 ( 24) TCGCTGCC 1 chrIV:15289636-15289716 ( 21) TCTCTACC 1 chrX:11252618-11252698 ( 37) ACGCGGCC 1 chrII:6898169-6898249 ( 65) ACGCGGCC 1 chrIV:16995552-16995632 ( 67) ACGCGGCC 1 chrX:8646451-8646531 ( 69) ACGCGGCC 1 chrX:12338031-12338111 ( 32) ACGCGGCC 1 chrX:13781580-13781660 ( 55) TCGCCGCC 1 chrIII:8971790-8971870 ( 55) ACGCCACC 1 chrX:6220015-6220095 ( 52) TCTCGACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTCYGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.20587 E= 1.4e-009 20 -1234 115 -60 -1234 203 -1234 -1234 -1234 -1234 34 140 -1234 203 -1234 -1234 -1234 24 -20 93 29 -1234 151 -1234 -1234 203 -1234 -1234 -1234 203 -1234 -1234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTCYGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.4e-009 0.288462 0.000000 0.538462 0.173077 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.307692 0.692308 0.000000 1.000000 0.000000 0.000000 0.000000 0.288462 0.211538 0.500000 0.307692 0.000000 0.692308 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTCYGCC MEME-4 regular expression -------------------------------------------------------------------------------- [GA]C[TG]C[TCG][GA]CC -------------------------------------------------------------------------------- Time 19.66 secs. ******************************************************************************** ******************************************************************************** MOTIF GGYAGAGC MEME-5 width = 8 sites = 16 llr = 166 E-value = 7.4e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGYAGAGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a:a:: pos.-specific C ::3::::a probability G aa1:a:a: matrix T ::6::::: bits 2.0 ** ***** 1.8 ** ***** 1.6 ** ***** 1.4 ** ***** Relative 1.2 ** ***** Entropy 1.0 ** ***** (15.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTAGAGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYAGAGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:535352-535432 47 1.38e-05 TAGCTCAGTT GGTAGAGC GGAGGACTGT chrIV:16399169-16399249 31 1.38e-05 ATAGCTCAGT GGTAGAGC GCTCCCTTAG chrX:4789105-4789185 44 1.38e-05 TAGCTCAGTT GGTAGAGC GTGAGACTTT chrII:7001603-7001683 40 1.38e-05 GTAGCTCAGG GGTAGAGC GCTCGCTTTG chrII:6565217-6565297 48 1.38e-05 TAGCTCAGTT GGTAGAGC GTGAGACTTT chrV:14689530-14689610 19 1.38e-05 TAGCTCAGTT GGTAGAGC GGAGGACTGT chrX:13653732-13653812 12 1.38e-05 ATAGCTCAGT GGTAGAGC GTTGGTCTTG chrI:6136596-6136676 18 1.38e-05 TAGCTCAGTC GGTAGAGC ACCAGACTCT chrI:6135800-6135880 47 1.38e-05 TAGCTCAGTT GGTAGAGC GGAGGACTGT chrI:11584757-11584837 47 1.38e-05 TAGCTCAGTC GGTAGAGC ACCAGACTCT chrX:14804848-14804928 45 2.67e-05 ATAGCTCAGT GGCAGAGC ATTCGACTGC chrV:2674001-2674081 25 2.67e-05 TTGGCTCAGT GGCAGAGC GTCTGTCTAG chrI:11505524-11505604 43 2.67e-05 ATAGCTCAGT GGCAGAGC ATTCGACTGC chrI:11803278-11803358 66 2.67e-05 AACCTACGCG GGCAGAGC CCATTTG chrX:8638911-8638991 27 2.67e-05 ATAGCTCAGT GGCAGAGC ATTCGACTGC chrIII:8653053-8653133 19 3.94e-05 TAGCTCAGTT GGGAGAGC GTACGACTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYAGAGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:535352-535432 1.4e-05 46_[+5]_26 chrIV:16399169-16399249 1.4e-05 30_[+5]_42 chrX:4789105-4789185 1.4e-05 43_[+5]_29 chrII:7001603-7001683 1.4e-05 39_[+5]_33 chrII:6565217-6565297 1.4e-05 47_[+5]_25 chrV:14689530-14689610 1.4e-05 18_[+5]_54 chrX:13653732-13653812 1.4e-05 11_[+5]_61 chrI:6136596-6136676 1.4e-05 17_[+5]_55 chrI:6135800-6135880 1.4e-05 46_[+5]_26 chrI:11584757-11584837 1.4e-05 46_[+5]_26 chrX:14804848-14804928 2.7e-05 44_[+5]_28 chrV:2674001-2674081 2.7e-05 24_[+5]_48 chrI:11505524-11505604 2.7e-05 42_[+5]_30 chrI:11803278-11803358 2.7e-05 65_[+5]_7 chrX:8638911-8638991 2.7e-05 26_[+5]_46 chrIII:8653053-8653133 3.9e-05 18_[+5]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYAGAGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGYAGAGC width=8 seqs=16 chrIII:535352-535432 ( 47) GGTAGAGC 1 chrIV:16399169-16399249 ( 31) GGTAGAGC 1 chrX:4789105-4789185 ( 44) GGTAGAGC 1 chrII:7001603-7001683 ( 40) GGTAGAGC 1 chrII:6565217-6565297 ( 48) GGTAGAGC 1 chrV:14689530-14689610 ( 19) GGTAGAGC 1 chrX:13653732-13653812 ( 12) GGTAGAGC 1 chrI:6136596-6136676 ( 18) GGTAGAGC 1 chrI:6135800-6135880 ( 47) GGTAGAGC 1 chrI:11584757-11584837 ( 47) GGTAGAGC 1 chrX:14804848-14804928 ( 45) GGCAGAGC 1 chrV:2674001-2674081 ( 25) GGCAGAGC 1 chrI:11505524-11505604 ( 43) GGCAGAGC 1 chrI:11803278-11803358 ( 66) GGCAGAGC 1 chrX:8638911-8638991 ( 27) GGCAGAGC 1 chrIII:8653053-8653133 ( 19) GGGAGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYAGAGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 7.4e-005 -1064 -1064 204 -1064 -1064 -1064 204 -1064 -1064 36 -195 125 199 -1064 -1064 -1064 -1064 -1064 204 -1064 199 -1064 -1064 -1064 -1064 -1064 204 -1064 -1064 203 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYAGAGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 7.4e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.312500 0.062500 0.625000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYAGAGC MEME-5 regular expression -------------------------------------------------------------------------------- GG[TC]AGAGC -------------------------------------------------------------------------------- Time 23.14 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:5192-5272 7.29e-01 80 chrX:5056378-5056458 9.69e-01 80 chrI:11585439-11585519 3.40e-01 80 chrV:16699925-16700005 9.83e-01 80 chrI:12004890-12004970 9.92e-01 80 chrI:933475-933555 9.59e-01 80 chrM:9999-10079 6.33e-01 80 chrII:2570624-2570704 9.97e-01 80 chrV:9088872-9088952 7.11e-01 80 chrII:14408039-14408119 9.92e-01 80 chrIII:931568-931648 9.64e-01 80 chrX:8603155-8603235 9.99e-01 80 chrM:9709-9789 9.06e-01 80 chrI:11609195-11609275 6.02e-01 80 chrI:11584757-11584837 6.84e-05 36_[+2(1.51e-05)]_2_[+5(1.38e-05)]_\ 26 chrM:10829-10909 7.01e-01 80 chrM:2992-3072 6.68e-01 80 chrM:3612-3692 1.04e-01 80 chrIV:15289636-15289716 4.49e-01 80 chrIII:3499999-3500079 6.02e-01 80 chrIV:14013849-14013929 1.91e-03 3_[+4(8.34e-05)]_1_[+3(1.51e-05)]_\ 60 chrM:8220-8300 5.99e-01 80 chrI:12093762-12093842 9.99e-01 80 chrI:6135800-6135880 2.12e-04 36_[+2(1.51e-05)]_2_[+5(1.38e-05)]_\ 26 chrI:6051182-6051262 6.25e-02 38_[+4(8.34e-05)]_34 chrM:7248-7328 9.57e-01 80 chrX:8638911-8638991 8.34e-04 17_[+2(1.51e-05)]_1_[+5(2.67e-05)]_\ 46 chrV:12510083-12510163 8.33e-01 80 chrI:11579701-11579781 1.09e-05 19_[+1(1.42e-05)]_25_[+4(8.34e-05)]_\ 2_[+3(1.51e-05)]_10 chrX:16602615-16602695 2.56e-02 33_[+1(2.87e-05)]_39 chrM:9100-9180 9.98e-01 80 chrIV:11071072-11071152 9.99e-01 80 chrM:6040-6120 8.22e-01 80 chrM:1049-1129 8.91e-01 80 chrX:3994565-3994645 5.44e-01 80 chrI:9249361-9249441 8.77e-03 52_[+4(9.72e-05)]_20 chrIII:9104229-9104309 1.51e-01 25_[+4(8.34e-05)]_47 chrX:8624222-8624302 5.68e-03 66_[+2(1.51e-05)]_6 chrI:8369759-8369839 2.13e-01 80 chrI:4175997-4176077 8.37e-01 80 chrV:19723066-19723146 7.37e-02 18_[+1(5.76e-05)]_54 chrI:11978764-11978844 3.14e-01 80 chrIII:6805608-6805688 7.37e-02 13_[+1(5.76e-05)]_59 chrIV:14576634-14576714 1.08e-01 2_[+1(1.42e-05)]_70 chrV:15554002-15554082 8.64e-01 80 chrM:2149-2229 9.17e-01 80 chrV:265631-265711 8.08e-01 80 chrM:4606-4686 9.96e-01 80 chrM:1249-1329 7.70e-01 80 chrX:9024431-9024511 3.44e-03 29_[+4(8.34e-05)]_1_[+3(1.51e-05)]_\ 34 chrX:14228941-14229021 7.68e-02 80 chrI:12225446-12225526 1.96e-01 80 chrX:12338031-12338111 1.71e-01 80 chrI:6136596-6136676 1.54e-05 7_[+2(1.51e-05)]_2_[+5(1.38e-05)]_\ 29_[+1(5.76e-05)]_18 chrX:3914477-3914557 6.26e-02 80 chrIV:1687238-1687318 8.53e-01 80 chrIII:4428985-4429065 4.90e-04 15_[+4(8.34e-05)]_1_[+3(1.51e-05)]_\ 48 chrI:12229337-12229417 6.79e-02 80 chrI:8307654-8307734 4.42e-01 80 chrX:3348015-3348095 7.33e-01 80 chrX:16944110-16944190 9.59e-01 80 chrI:12008206-12008286 2.08e-01 80 chrI:4132285-4132365 6.50e-02 80 chrIV:5371033-5371113 9.97e-01 80 chrIII:4542508-4542588 7.23e-01 80 chrI:7527048-7527128 9.95e-01 80 chrX:13653732-13653812 8.25e-04 2_[+2(1.51e-05)]_1_[+5(1.38e-05)]_\ 61 chrV:14689530-14689610 4.56e-05 8_[+2(1.51e-05)]_2_[+5(1.38e-05)]_\ 54 chrII:6565217-6565297 5.72e-05 37_[+2(1.51e-05)]_2_[+5(1.38e-05)]_\ 25 chrI:1575691-1575771 8.02e-01 80 chrX:5407415-5407495 3.65e-04 45_[+4(8.34e-05)]_27 chrI:11788252-11788332 7.81e-01 80 chrIII:3664418-3664498 3.19e-01 80 chrX:12890293-12890373 6.15e-05 6_[+1(7.28e-05)]_25_[+4(8.34e-05)]_\ 1_[+3(1.51e-05)]_24 chrIII:10432252-10432332 7.61e-01 80 chrIII:8650353-8650433 5.86e-02 42_[+1(1.42e-05)]_30 chrIV:16684400-16684480 7.18e-01 80 chrX:11666775-11666855 8.52e-01 80 chrV:19519625-19519705 8.94e-01 80 chrX:8944279-8944359 2.63e-01 80 chrX:16271313-16271393 3.16e-01 80 chrV:3098923-3099003 9.99e-01 80 chrIV:842755-842835 9.87e-01 80 chrI:11911015-11911095 4.76e-02 57_[+4(2.75e-05)]_15 chrV:7231024-7231104 6.41e-01 80 chrI:7550408-7550488 4.23e-01 80 chrI:2487849-2487929 6.50e-01 80 chrX:8818041-8818121 9.93e-01 80 chrIII:2314943-2315023 9.01e-01 80 chrI:11675615-11675695 9.77e-01 80 chrII:3567748-3567828 1.77e-03 30_[+1(1.42e-05)]_25_[+4(8.34e-05)]_\ 9 chrIV:15059343-15059423 8.77e-01 80 chrIV:385241-385321 2.10e-01 80 chrI:11803278-11803358 8.76e-04 52_[+1(4.39e-05)]_5_[+5(2.67e-05)]_\ 7 chrX:13415147-13415227 1.04e-02 31_[+3(1.51e-05)]_41 chrI:11746858-11746938 9.03e-01 80 chrII:4238066-4238146 9.70e-03 56_[+4(2.75e-05)]_16 chrIII:7642174-7642254 3.16e-01 80 chrI:1175827-1175907 9.98e-01 80 chrII:8716534-8716614 5.69e-01 80 chrII:8790285-8790365 7.16e-01 80 chrIV:5334707-5334787 7.03e-01 80 chrI:14606050-14606130 4.99e-03 31_[+4(2.75e-05)]_41 chrII:7001603-7001683 1.00e-03 30_[+2(1.51e-05)]_1_[+5(1.38e-05)]_\ 33 chrM:12417-12497 9.96e-01 80 chrX:9296751-9296831 7.58e-01 80 chrX:14115652-14115732 9.29e-01 80 chrIII:3249183-3249263 9.96e-01 80 chrX:8156137-8156217 2.24e-01 80 chrV:3587775-3587855 1.17e-01 57_[+4(9.72e-05)]_15 chrIII:12673504-12673584 8.79e-01 80 chrI:8333082-8333162 6.48e-01 80 chrIII:10857002-10857082 9.95e-01 80 chrI:14708109-14708189 1.89e-01 15_[+4(9.72e-05)]_57 chrX:4789105-4789185 4.21e-04 33_[+2(1.51e-05)]_2_[+5(1.38e-05)]_\ 29 chrIII:7030553-7030633 2.44e-05 18_[+1(2.87e-05)]_25_[+4(1.42e-05)]_\ 1_[+3(2.91e-05)]_12 chrI:9141749-9141829 3.92e-01 80 chrI:12044175-12044255 9.15e-01 80 chrII:5772918-5772998 6.10e-03 12_[+1(1.42e-05)]_60 chrII:3267925-3268005 9.80e-01 80 chrI:9268982-9269062 1.36e-01 80 chrIV:2802352-2802432 8.22e-01 80 chrI:11670262-11670342 7.87e-01 80 chrII:5836509-5836589 9.42e-01 80 chrIII:1824647-1824727 9.82e-01 80 chrX:8925608-8925688 2.92e-01 80 chrII:3439413-3439493 1.65e-03 28_[+4(8.34e-05)]_2_[+3(1.51e-05)]_\ 34 chrIII:3476405-3476485 9.67e-01 80 chrIII:8653053-8653133 1.59e-04 8_[+2(1.51e-05)]_2_[+5(3.94e-05)]_\ 54 chrX:16928284-16928364 2.82e-03 1_[+1(1.42e-05)]_71 chrIII:640579-640659 9.39e-01 80 chrV:12331940-12332020 6.22e-03 39_[+1(2.87e-05)]_25_[+4(8.34e-05)] chrV:14855809-14855889 2.69e-04 25_[+4(1.42e-05)]_1_[+3(1.51e-05)]_\ 38 chrIV:16776048-16776128 9.70e-01 80 chrI:11505524-11505604 1.73e-03 33_[+2(1.51e-05)]_1_[+5(2.67e-05)]_\ 30 chrIII:9051286-9051366 9.86e-01 80 chrII:7708729-7708809 9.54e-01 80 chrI:6757136-6757216 2.23e-01 80 chrIII:11236951-11237031 3.12e-01 80 chrV:16553140-16553220 8.17e-01 80 chrX:14504391-14504471 9.14e-01 80 chrIII:343808-343888 9.97e-01 80 chrV:2674001-2674081 1.27e-03 24_[+5(2.67e-05)]_48 chrIV:16863626-16863706 2.18e-01 80 chrV:265404-265484 9.67e-01 80 chrI:10026039-10026119 6.03e-01 80 chrI:4633663-4633743 6.81e-01 80 chrIII:5769873-5769953 3.31e-01 80 chrIII:3175131-3175211 6.39e-01 80 chrX:8646451-8646531 5.90e-01 80 chrIV:16995552-16995632 1.88e-01 80 chrIV:11928524-11928604 1.70e-02 80 chrIII:13225182-13225262 2.66e-02 27_[+4(8.34e-05)]_45 chrX:10148631-10148711 9.00e-02 32_[+1(4.39e-05)]_40 chrX:8386175-8386255 9.44e-01 80 chrIII:3916783-3916863 4.97e-01 80 chrV:18723741-18723821 2.53e-01 80 chrIV:16399169-16399249 1.21e-04 21_[+2(1.51e-05)]_1_[+5(1.38e-05)]_\ 42 chrX:12367637-12367717 4.82e-02 19_[+1(1.42e-05)]_53 chrI:3873915-3873995 7.66e-01 80 chrII:6898169-6898249 2.48e-01 80 chrI:7094973-7095053 9.61e-01 80 chrIII:535352-535432 1.05e-03 36_[+2(1.51e-05)]_2_[+5(1.38e-05)]_\ 26 chrII:6859062-6859142 8.94e-01 80 chrV:14524326-14524406 9.95e-01 80 chrIV:2805595-2805675 5.56e-01 80 chrX:10821338-10821418 4.82e-02 3_[+1(1.42e-05)]_69 chrX:7794391-7794471 8.59e-01 80 chrIII:4426850-4426930 5.75e-01 80 chrIII:8106633-8106713 1.43e-02 26_[+2(2.90e-05)]_46 chrI:11578305-11578385 6.99e-01 80 chrI:9605754-9605834 2.71e-02 64_[+1(1.42e-05)]_8 chrIII:4947376-4947456 7.10e-01 80 chrX:8969676-8969756 9.63e-01 80 chrV:8235439-8235519 4.62e-02 33_[+1(1.42e-05)]_39 chrI:11323358-11323438 8.46e-03 46_[+4(9.72e-05)]_26 chrX:9622826-9622906 9.66e-06 12_[+1(7.28e-05)]_25_[+4(8.34e-05)]_\ 1_[+3(1.51e-05)]_18 chrX:14804848-14804928 3.63e-04 35_[+2(1.51e-05)]_1_[+5(2.67e-05)]_\ 28 chrIV:11310772-11310852 6.48e-01 80 chrX:4444195-4444275 7.59e-01 80 chrIV:1388248-1388328 5.29e-01 80 chrX:13781580-13781660 1.48e-02 66_[+2(1.51e-05)]_6 chrII:12042367-12042447 9.15e-01 80 chrI:7872258-7872338 9.38e-01 80 chrI:1415935-1416015 1.46e-01 80 chrI:1823198-1823278 6.72e-01 80 chrII:6248653-6248733 1.23e-01 80 chrX:2885468-2885548 5.62e-01 80 chrIV:16498181-16498261 7.63e-01 80 chrI:7084524-7084604 9.08e-01 80 chrV:12780430-12780510 3.88e-01 80 chrII:3521487-3521567 9.15e-02 14_[+1(2.87e-05)]_58 chrIII:10624733-10624813 2.44e-05 23_[+1(2.87e-05)]_25_[+4(1.42e-05)]_\ 1_[+3(2.91e-05)]_7 chrV:15551823-15551903 9.98e-01 80 chrII:5293395-5293475 7.65e-01 80 chrX:5319404-5319484 6.65e-03 38_[+3(1.51e-05)]_34 chrX:16930876-16930956 7.94e-01 80 chrI:10927484-10927564 4.85e-01 80 chrI:14721596-14721676 3.32e-01 80 chrIII:1218397-1218477 2.08e-02 37_[+3(1.51e-05)]_35 chrIV:3524817-3524897 1.31e-01 80 chrII:11157800-11157880 1.87e-06 16_[+1(1.42e-05)]_25_[+4(8.34e-05)]_\ 2_[+3(1.51e-05)]_13 chrII:11756783-11756863 9.80e-01 80 chrX:8971586-8971666 9.33e-02 59_[+4(1.42e-05)]_13 chrX:1880843-1880923 4.72e-01 80 chrV:4731526-4731606 9.65e-01 80 chrX:11252618-11252698 7.92e-03 55_[+2(5.75e-05)]_17 chrI:7866262-7866342 6.96e-01 80 chrX:5707980-5708060 8.86e-01 80 chrIV:9191339-9191419 7.56e-01 80 chrIII:1122427-1122507 4.29e-02 13_[+2(2.90e-05)]_59 chrII:6721704-6721784 2.74e-01 80 chrV:13962192-13962272 1.93e-01 80 chrX:11935120-11935200 3.70e-04 7_[+4(1.42e-05)]_1_[+3(1.51e-05)]_\ 56 chrIV:14225125-14225205 5.22e-01 80 chrV:9583080-9583160 9.20e-01 80 chrII:5577256-5577336 7.81e-01 80 chrX:6903145-6903225 8.82e-02 34_[+4(8.34e-05)]_38 chrIII:1604744-1604824 3.45e-01 80 chrV:20694175-20694255 1.81e-02 2_[+3(1.51e-05)]_70 chrIII:8971790-8971870 4.78e-01 80 chrX:6220015-6220095 1.59e-02 69_[+1(4.39e-05)]_3 chrIII:1601613-1601693 8.35e-02 80 chrIII:12399873-12399953 2.90e-01 80 chrIV:620456-620536 6.26e-01 80 chrII:7756941-7757021 2.49e-01 80 chrII:6741549-6741629 9.51e-01 80 chrI:8530167-8530247 5.00e-01 80 chrI:6252936-6253016 6.60e-01 80 chrIV:11026161-11026241 9.85e-01 80 chrX:1837830-1837910 8.79e-04 12_[+1(2.87e-05)]_60 chrIV:16400923-16401003 6.59e-01 80 chrV:11239331-11239411 6.58e-01 80 chrII:14635279-14635359 3.35e-02 70_[+1(1.42e-05)]_2 chrI:488417-488497 4.40e-01 80 chrX:9637839-9637919 9.66e-06 27_[+1(7.28e-05)]_25_[+4(8.34e-05)]_\ 1_[+3(1.51e-05)]_3 chrII:9566206-9566286 3.36e-01 80 chrII:11959386-11959466 2.15e-01 80 chrX:10132647-10132727 5.74e-01 80 chrIII:4568714-4568794 5.58e-01 80 chrIV:16865668-16865748 9.82e-01 80 chrIV:9477714-9477794 4.70e-01 80 chrIII:8768060-8768140 6.56e-01 80 chrI:1444145-1444225 5.36e-01 80 chrIII:6887750-6887830 1.28e-03 25_[+4(8.34e-05)]_2_[+3(1.51e-05)]_\ 37 chrI:2410092-2410172 1.04e-01 80 chrX:16604764-16604844 9.10e-01 80 chrX:9091594-9091674 7.05e-01 80 chrI:11517274-11517354 7.34e-01 80 chrIII:4171146-4171226 6.73e-02 63_[+4(2.75e-05)]_9 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************