******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/hmg-4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:7158141-7158221 1.0000 80 chrIV:9267737-9267817 1.0000 80 chrI:2708363-2708443 1.0000 80 chrI:3246542-3246622 1.0000 80 chrI:8028814-8028894 1.0000 80 chrIV:3767951-3768031 1.0000 80 chrX:14577830-14577910 1.0000 80 chrV:153993-154073 1.0000 80 chrX:11366125-11366205 1.0000 80 chrIII:9176133-9176213 1.0000 80 chrIII:10666783-10666863 1.0000 80 chrX:3223308-3223388 1.0000 80 chrII:10504956-10505036 1.0000 80 chrX:2583383-2583463 1.0000 80 chrI:7140702-7140782 1.0000 80 chrI:1967138-1967218 1.0000 80 chrIII:7656608-7656688 1.0000 80 chrIII:7378258-7378338 1.0000 80 chrI:10822542-10822622 1.0000 80 chrV:152294-152374 1.0000 80 chrII:12987976-12988056 1.0000 80 chrX:2878239-2878319 1.0000 80 chrX:10396706-10396786 1.0000 80 chrX:16457266-16457346 1.0000 80 chrX:10846400-10846480 1.0000 80 chrX:2706069-2706149 1.0000 80 chrII:10075954-10076034 1.0000 80 chrI:4746904-4746984 1.0000 80 chrX:11600617-11600697 1.0000 80 chrX:11306729-11306809 1.0000 80 chrI:9402930-9403010 1.0000 80 chrX:4498555-4498635 1.0000 80 chrI:9734108-9734188 1.0000 80 chrII:11537925-11538005 1.0000 80 chrX:5641495-5641575 1.0000 80 chrIV:8008359-8008439 1.0000 80 chrX:10849708-10849788 1.0000 80 chrII:11890818-11890898 1.0000 80 chrI:14325426-14325506 1.0000 80 chrII:13847541-13847621 1.0000 80 chrII:14166350-14166430 1.0000 80 chrII:15080704-15080784 1.0000 80 chrI:7942659-7942739 1.0000 80 chrI:14146840-14146920 1.0000 80 chrX:4513793-4513873 1.0000 80 chrX:10596668-10596748 1.0000 80 chrIII:7383412-7383492 1.0000 80 chrIV:173132-173212 1.0000 80 chrX:6806689-6806769 1.0000 80 chrV:14498356-14498436 1.0000 80 chrX:5360806-5360886 1.0000 80 chrIV:8819566-8819646 1.0000 80 chrI:532779-532859 1.0000 80 chrI:7214874-7214954 1.0000 80 chrX:9931582-9931662 1.0000 80 chrX:5518495-5518575 1.0000 80 chrX:21142-21222 1.0000 80 chrIV:174344-174424 1.0000 80 chrI:7713666-7713746 1.0000 80 chrX:7965656-7965736 1.0000 80 chrIII:179394-179474 1.0000 80 chrII:4517409-4517489 1.0000 80 chrII:5667594-5667674 1.0000 80 chrIV:12617384-12617464 1.0000 80 chrX:2452888-2452968 1.0000 80 chrI:14960452-14960532 1.0000 80 chrI:8984010-8984090 1.0000 80 chrIII:5107365-5107445 1.0000 80 chrIII:9969485-9969565 1.0000 80 chrI:10069965-10070045 1.0000 80 chrI:447839-447919 1.0000 80 chrIII:11887855-11887935 1.0000 80 chrX:4881452-4881532 1.0000 80 chrI:9447356-9447436 1.0000 80 chrX:7464561-7464641 1.0000 80 chrII:10065598-10065678 1.0000 80 chrX:13881949-13882029 1.0000 80 chrIV:13090030-13090110 1.0000 80 chrIV:175872-175952 1.0000 80 chrIV:4588605-4588685 1.0000 80 chrIV:5078102-5078182 1.0000 80 chrI:13997031-13997111 1.0000 80 chrX:9089662-9089742 1.0000 80 chrV:1570827-1570907 1.0000 80 chrIII:8132626-8132706 1.0000 80 chrII:9263122-9263202 1.0000 80 chrI:11209985-11210065 1.0000 80 chrII:7090965-7091045 1.0000 80 chrI:11077664-11077744 1.0000 80 chrI:14141758-14141838 1.0000 80 chrX:3040770-3040850 1.0000 80 chrI:7194933-7195013 1.0000 80 chrI:14067519-14067599 1.0000 80 chrX:3467503-3467583 1.0000 80 chrII:11979594-11979674 1.0000 80 chrIV:3337402-3337482 1.0000 80 chrI:6279391-6279471 1.0000 80 chrV:1578928-1579008 1.0000 80 chrX:14776483-14776563 1.0000 80 chrIV:572683-572763 1.0000 80 chrI:3861663-3861743 1.0000 80 chrIII:13713944-13714024 1.0000 80 chrI:12592986-12593066 1.0000 80 chrIII:5318577-5318657 1.0000 80 chrII:6831929-6832009 1.0000 80 chrV:19629693-19629773 1.0000 80 chrX:2700860-2700940 1.0000 80 chrX:7562814-7562894 1.0000 80 chrV:14501323-14501403 1.0000 80 chrV:5023594-5023674 1.0000 80 chrX:5344107-5344187 1.0000 80 chrX:15725706-15725786 1.0000 80 chrV:20423181-20423261 1.0000 80 chrV:9422891-9422971 1.0000 80 chrX:11210538-11210618 1.0000 80 chrX:852862-852942 1.0000 80 chrI:8046587-8046667 1.0000 80 chrI:11092114-11092194 1.0000 80 chrX:2924427-2924507 1.0000 80 chrI:11197226-11197306 1.0000 80 chrII:4571284-4571364 1.0000 80 chrII:10371056-10371136 1.0000 80 chrX:13948328-13948408 1.0000 80 chrIV:3807836-3807916 1.0000 80 chrII:5228807-5228887 1.0000 80 chrX:2731654-2731734 1.0000 80 chrX:2513813-2513893 1.0000 80 chrI:4697617-4697697 1.0000 80 chrII:11535640-11535720 1.0000 80 chrI:3250753-3250833 1.0000 80 chrX:8805653-8805733 1.0000 80 chrV:20410469-20410549 1.0000 80 chrI:648565-648645 1.0000 80 chrX:8569407-8569487 1.0000 80 chrI:9116195-9116275 1.0000 80 chrII:11543167-11543247 1.0000 80 chrX:10593978-10594058 1.0000 80 chrX:11072894-11072974 1.0000 80 chrX:2879790-2879870 1.0000 80 chrIII:4407669-4407749 1.0000 80 chrV:1568920-1569000 1.0000 80 chrX:15877145-15877225 1.0000 80 chrX:4576435-4576515 1.0000 80 chrX:3887788-3887868 1.0000 80 chrII:8224983-8225063 1.0000 80 chrX:2901256-2901336 1.0000 80 chrI:8281769-8281849 1.0000 80 chrX:10623302-10623382 1.0000 80 chrX:10074350-10074430 1.0000 80 chrV:14646373-14646453 1.0000 80 chrII:8769568-8769648 1.0000 80 chrI:7706134-7706214 1.0000 80 chrI:9435266-9435346 1.0000 80 chrI:6154438-6154518 1.0000 80 chrV:1572794-1572874 1.0000 80 chrII:6188990-6189070 1.0000 80 chrIII:12576001-12576081 1.0000 80 chrIV:11584162-11584242 1.0000 80 chrX:11297061-11297141 1.0000 80 chrII:6831070-6831150 1.0000 80 chrIII:13720513-13720593 1.0000 80 chrX:14027046-14027126 1.0000 80 chrX:10594961-10595041 1.0000 80 chrII:7813459-7813539 1.0000 80 chrIV:9263937-9264017 1.0000 80 chrIII:9112637-9112717 1.0000 80 chrV:14460882-14460962 1.0000 80 chrV:6679859-6679939 1.0000 80 chrI:3438166-3438246 1.0000 80 chrIII:1054260-1054340 1.0000 80 chrI:8978084-8978164 1.0000 80 chrIV:2398562-2398642 1.0000 80 chrI:2404777-2404857 1.0000 80 chrX:6040934-6041014 1.0000 80 chrX:12686506-12686586 1.0000 80 chrV:19242766-19242846 1.0000 80 chrX:16414720-16414800 1.0000 80 chrX:3102962-3103042 1.0000 80 chrX:7215603-7215683 1.0000 80 chrI:6577295-6577375 1.0000 80 chrX:2046425-2046505 1.0000 80 chrII:2461382-2461462 1.0000 80 chrX:9637226-9637306 1.0000 80 chrIV:8002721-8002801 1.0000 80 chrI:13263080-13263160 1.0000 80 chrV:19308229-19308309 1.0000 80 chrII:9354672-9354752 1.0000 80 chrIV:12545940-12546020 1.0000 80 chrV:8950070-8950150 1.0000 80 chrX:3465384-3465464 1.0000 80 chrIII:347109-347189 1.0000 80 chrX:8392911-8392991 1.0000 80 chrII:5226490-5226570 1.0000 80 chrIV:14071653-14071733 1.0000 80 chrX:15102522-15102602 1.0000 80 chrX:2520752-2520832 1.0000 80 chrV:20763566-20763646 1.0000 80 chrV:6470268-6470348 1.0000 80 chrIII:12894343-12894423 1.0000 80 chrII:3962515-3962595 1.0000 80 chrX:1222584-1222664 1.0000 80 chrX:5205767-5205847 1.0000 80 chrV:9617021-9617101 1.0000 80 chrIII:7824886-7824966 1.0000 80 chrX:2780055-2780135 1.0000 80 chrII:7084566-7084646 1.0000 80 chrX:8201362-8201442 1.0000 80 chrX:16525817-16525897 1.0000 80 chrX:7713076-7713156 1.0000 80 chrX:1224049-1224129 1.0000 80 chrIV:8009487-8009567 1.0000 80 chrIII:9705336-9705416 1.0000 80 chrIV:11600367-11600447 1.0000 80 chrII:11636804-11636884 1.0000 80 chrX:15277944-15278024 1.0000 80 chrX:4157966-4158046 1.0000 80 chrX:1801101-1801181 1.0000 80 chrII:9939586-9939666 1.0000 80 chrI:1559213-1559293 1.0000 80 chrX:13143351-13143431 1.0000 80 chrV:1577444-1577524 1.0000 80 chrX:2871163-2871243 1.0000 80 chrV:15065248-15065328 1.0000 80 chrX:12188672-12188752 1.0000 80 chrI:14805031-14805111 1.0000 80 chrII:6522786-6522866 1.0000 80 chrIV:11573563-11573643 1.0000 80 chrX:3683178-3683258 1.0000 80 chrI:6843278-6843358 1.0000 80 chrV:1585761-1585841 1.0000 80 chrX:2907599-2907679 1.0000 80 chrX:17562398-17562478 1.0000 80 chrX:16447214-16447294 1.0000 80 chrIII:12609631-12609711 1.0000 80 chrV:14504903-14504983 1.0000 80 chrIII:869965-870045 1.0000 80 chrX:3655768-3655848 1.0000 80 chrI:13371344-13371424 1.0000 80 chrV:20455762-20455842 1.0000 80 chrII:6409220-6409300 1.0000 80 chrII:5933288-5933368 1.0000 80 chrI:11179320-11179400 1.0000 80 chrIII:11363005-11363085 1.0000 80 chrX:432483-432563 1.0000 80 chrX:7151626-7151706 1.0000 80 chrX:1529238-1529318 1.0000 80 chrX:10395929-10396009 1.0000 80 chrX:5099947-5100027 1.0000 80 chrX:2572837-2572917 1.0000 80 chrI:7709124-7709204 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_hmg-4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/hmg-4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.244 C 0.261 G 0.262 T 0.233 Background letter frequencies (from file dataset with add-one prior applied): A 0.244 C 0.261 G 0.262 T 0.233 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGAGARR MEME-1 width = 8 sites = 68 llr = 495 E-value = 8.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAGARR MEME-1 Description -------------------------------------------------------------------------------- Simplified A :7:a3745 pos.-specific C ::::::2: probability G a3a:7345 matrix T :::::::: bits 2.1 * 1.9 * ** 1.7 * ** 1.5 * ** Relative 1.3 * ** Entropy 1.0 ****** * (10.5 bits) 0.8 ****** * 0.6 ****** * 0.4 ****** * 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus G AGAG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2572837-2572917 28 1.67e-05 ACGAGAGGAT GAGAGAGA CCAGGCAATG chrIII:869965-870045 31 1.67e-05 ACAAGTGAAG GAGAGAGA CGGACCCTTC chrIV:8002721-8002801 9 1.67e-05 AGATGTGT GAGAGAGA GACCCATCTT chrV:6679859-6679939 64 1.67e-05 CAGATAGAGG GAGAGAGA AAGCTGAGA chrI:9116195-9116275 34 1.67e-05 GGCGAAGAGT GAGAGAGA GGCGGGGAGT chrX:852862-852942 45 1.67e-05 gggagaccga gagagaga AAAGGGACTG chrX:3040770-3040850 14 1.67e-05 AAGGAGGAGC GAGAGAGA AAAGCCATGC chrX:6806689-6806769 17 1.67e-05 CACGGAGAga gagagaga gggagaggga chrIV:8008359-8008439 15 1.67e-05 AGGACATAGA GAGAGAGA TGCAGAGGTA chrI:3246542-3246622 51 1.67e-05 CTGTAGGAGA GAGAGAGA GAGGGGACTA chrX:1224049-1224129 22 3.23e-05 AGAAGAAACA GAGAGAAA GAGCGACATA chrX:7464561-7464641 49 3.23e-05 CCAGCCAAGT GAGAGAAA ACGCCGCCGA chrIV:5078102-5078182 36 5.02e-05 AGGTCTCAAG GAGAGAGG GAAGGGGTCG chrIII:7656608-7656688 14 5.02e-05 GAACCACAGC GAGAGAGG GAAATGGCTA chrX:13881949-13882029 35 6.69e-05 CATCGTCGTC GAGAGAAG CAACAGAAGT chrX:1529238-1529318 38 1.18e-04 GATTCTTTGA GGGAGAGA GCACAGTGTG chrV:1570827-1570907 52 1.18e-04 TCTAGGACTA GAGAGGGA GGTCATCTTT chrIV:9267737-9267817 6 1.18e-04 TATAG GAGAAAGA GAGACGAAGA chrX:10395929-10396009 41 1.83e-04 CGCAGAAACG GAGAGACA GTGCGCCCTC chrIII:12894343-12894423 49 1.83e-04 GGAGGGCCCA GAGAGACA AGACAAGGAG chrX:2046425-2046505 71 1.83e-04 TCGATGGGAG GAGAGGAA AA chrII:8769568-8769648 34 1.83e-04 ATGGTGGGGT GAGAGACA TGATGAAGGG chrX:5344107-5344187 57 1.83e-04 ATCACACGAG GAGAGGAA GTACGCATAG chrII:6831929-6832009 64 1.83e-04 TCTGAACACA GAGAGACA CAGAGTGAG chrI:6279391-6279471 6 1.83e-04 CAACG GAGAAAAA GCGATAATGG chrIII:9969485-9969565 67 1.83e-04 CATCTTCAAA GAGAAAAA GAGTGA chrII:11537925-11538005 70 1.83e-04 CTCTATCACC GGGAGAAA AAC chrI:4746904-4746984 43 1.83e-04 CATTCTCTTT GAGAGGAA GAAGCAGCAG chrIII:11363005-11363085 70 2.38e-04 CCTTCTTCTA GAGAAAGG TGT chrX:16447214-16447294 15 2.38e-04 GGGGTTCATC GGGAGAGG ATAATATTAC chrI:13263080-13263160 69 2.38e-04 TGTATTGATT GAGAAAGG ACCA chrX:11210538-11210618 14 2.38e-04 GCCGTGAAAC GAGAGGGG AATGTAAAGT chrI:7194933-7195013 71 2.38e-04 GACGATGATC GGGAGAGG TC chrX:2706069-2706149 68 2.38e-04 GGTGAGGTGG GGGAGAGG AGAGA chrII:12987976-12988056 42 2.38e-04 GGGGAGGTGG GGGAGAGG GTGCGCAAAA chrX:8201362-8201442 43 3.07e-04 TGGTAGGAAA GAGAGGAG AGTAAAGAGT chrIII:9112637-9112717 10 3.07e-04 GGAGATGCG GAGAGACG AGCGTAGGGT chrIV:11584162-11584242 20 3.07e-04 GCTAGGCGAG GAGAGGAG CGCGCGCAGT chrX:2731654-2731734 68 3.07e-04 CAATAGACGA GGGAGAAG AGGGG chrI:3861663-3861743 21 3.07e-04 GGAGAGAACG GAGAGACG CAGGAAAAAA chrII:7090965-7091045 15 3.07e-04 AGAGTACGCG GGGAGAAG ATAGGTCACA chrI:9447356-9447436 60 3.07e-04 GAATTTAGAG GAGAAAAG AGTCATAGTT chrX:10849708-10849788 14 3.07e-04 TTAAGACAAC GAGAGGAG GGCCATACGA chrI:6577295-6577375 8 3.60e-04 TCCCGAA GGGAAAGA CCTCTTGCGC chrII:7813459-7813539 38 3.60e-04 GTGAAGAATG GGGAAAGA AGGAGACCTA chrIV:3807836-3807916 39 3.60e-04 gggggggggg gggaggga ggtggTACAA chrI:8984010-8984090 63 3.60e-04 CCTTTTCCGA GGGAGGGA TATAGATAGA chrIV:11573563-11573643 5 4.60e-04 CGTT GAGAAGAA AGAAGGAGCG chrX:7713076-7713156 53 4.60e-04 GATGTGCAAA GAGAAGAA GACTGCGCGG chrII:11535640-11535720 68 4.60e-04 CATTGTGCAT GGGAGACA CATCG chrX:4498555-4498635 5 4.60e-04 TAAG GAGAGGCA TGCGCAGAGA chrII:10504956-10505036 25 4.60e-04 AGAGCCAGAT GGGAGGAA ACGTTTCTCT chrIV:8009487-8009567 49 5.17e-04 ATTTTCTGTA GAGAAGGG AATGGTGACG chrIII:13720513-13720593 67 5.17e-04 ATGCGCACAC GGGAGGGG AAGAAG chrI:11092114-11092194 7 5.17e-04 GGAACG GGGAAAGG AAGAGGCAAG chrV:14504903-14504983 68 6.24e-04 CCGGGGCGGT GGGAGGAG GGCGC chrII:2461382-2461462 40 6.24e-04 GGCTCTAGCT GGGAAAAG CGGCCCAAAA chrII:11543167-11543247 19 6.24e-04 GTGGTTCGGC GAGAAACG TGGCAGGTGC chrV:20410469-20410549 63 6.24e-04 GCGGCGGGCA GAGAAGAG GGGGTTGTAA chrIV:4588605-4588685 34 6.24e-04 GTAGGGAAAA GAGAAGAG GCCGCGCGCC chrX:2452888-2452968 63 6.24e-04 CAGAGATGAG GGGAGACG CGATCTGCTG chrX:11306729-11306809 30 6.24e-04 GAAGTGTGCG GAGAAGAG TGTTCGACGG chrX:10846400-10846480 22 6.24e-04 GCAAGACCTT GGGAGGAG TAGGGCGAGG chrII:13847541-13847621 72 6.39e-04 TGGAGACGAC GAGAGATA T chrX:9931582-9931662 28 6.55e-04 GTTAGTGACA GAGAGATG AGCGGTTGTG chrIII:9176133-9176213 46 6.55e-04 AGGAAGAACC GAGAGATG TAGTGTTGAA chrIII:12576001-12576081 42 7.42e-04 GGTGGCGGAG GGGAAACA TTCGGGACAT chrX:4881452-4881532 24 7.42e-04 AGCGTTTGGT GGGAAACA GGGGGAACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2572837-2572917 1.7e-05 27_[+1]_45 chrIII:869965-870045 1.7e-05 30_[+1]_42 chrIV:8002721-8002801 1.7e-05 8_[+1]_64 chrV:6679859-6679939 1.7e-05 63_[+1]_9 chrI:9116195-9116275 1.7e-05 33_[+1]_39 chrX:852862-852942 1.7e-05 44_[+1]_28 chrX:3040770-3040850 1.7e-05 13_[+1]_59 chrX:6806689-6806769 1.7e-05 16_[+1]_56 chrIV:8008359-8008439 1.7e-05 14_[+1]_58 chrI:3246542-3246622 1.7e-05 50_[+1]_22 chrX:1224049-1224129 3.2e-05 21_[+1]_51 chrX:7464561-7464641 3.2e-05 48_[+1]_24 chrIV:5078102-5078182 5e-05 35_[+1]_37 chrIII:7656608-7656688 5e-05 13_[+1]_59 chrX:13881949-13882029 6.7e-05 34_[+1]_38 chrX:1529238-1529318 0.00012 37_[+1]_35 chrV:1570827-1570907 0.00012 51_[+1]_21 chrIV:9267737-9267817 0.00012 5_[+1]_67 chrX:10395929-10396009 0.00018 40_[+1]_32 chrIII:12894343-12894423 0.00018 48_[+1]_24 chrX:2046425-2046505 0.00018 70_[+1]_2 chrII:8769568-8769648 0.00018 33_[+1]_39 chrX:5344107-5344187 0.00018 56_[+1]_16 chrII:6831929-6832009 0.00018 63_[+1]_9 chrI:6279391-6279471 0.00018 5_[+1]_67 chrIII:9969485-9969565 0.00018 66_[+1]_6 chrII:11537925-11538005 0.00018 69_[+1]_3 chrI:4746904-4746984 0.00018 42_[+1]_30 chrIII:11363005-11363085 0.00024 69_[+1]_3 chrX:16447214-16447294 0.00024 14_[+1]_58 chrI:13263080-13263160 0.00024 68_[+1]_4 chrX:11210538-11210618 0.00024 13_[+1]_59 chrI:7194933-7195013 0.00024 70_[+1]_2 chrX:2706069-2706149 0.00024 67_[+1]_5 chrII:12987976-12988056 0.00024 41_[+1]_31 chrX:8201362-8201442 0.00031 42_[+1]_30 chrIII:9112637-9112717 0.00031 9_[+1]_63 chrIV:11584162-11584242 0.00031 19_[+1]_53 chrX:2731654-2731734 0.00031 67_[+1]_5 chrI:3861663-3861743 0.00031 20_[+1]_52 chrII:7090965-7091045 0.00031 14_[+1]_58 chrI:9447356-9447436 0.00031 59_[+1]_13 chrX:10849708-10849788 0.00031 13_[+1]_59 chrI:6577295-6577375 0.00036 7_[+1]_65 chrII:7813459-7813539 0.00036 37_[+1]_35 chrIV:3807836-3807916 0.00036 38_[+1]_34 chrI:8984010-8984090 0.00036 62_[+1]_10 chrIV:11573563-11573643 0.00046 4_[+1]_68 chrX:7713076-7713156 0.00046 52_[+1]_20 chrII:11535640-11535720 0.00046 67_[+1]_5 chrX:4498555-4498635 0.00046 4_[+1]_68 chrII:10504956-10505036 0.00046 24_[+1]_48 chrIV:8009487-8009567 0.00052 48_[+1]_24 chrIII:13720513-13720593 0.00052 66_[+1]_6 chrI:11092114-11092194 0.00052 6_[+1]_66 chrV:14504903-14504983 0.00062 67_[+1]_5 chrII:2461382-2461462 0.00062 39_[+1]_33 chrII:11543167-11543247 0.00062 18_[+1]_54 chrV:20410469-20410549 0.00062 62_[+1]_10 chrIV:4588605-4588685 0.00062 33_[+1]_39 chrX:2452888-2452968 0.00062 62_[+1]_10 chrX:11306729-11306809 0.00062 29_[+1]_43 chrX:10846400-10846480 0.00062 21_[+1]_51 chrII:13847541-13847621 0.00064 71_[+1]_1 chrX:9931582-9931662 0.00066 27_[+1]_45 chrIII:9176133-9176213 0.00066 45_[+1]_27 chrIII:12576001-12576081 0.00074 41_[+1]_31 chrX:4881452-4881532 0.00074 23_[+1]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAGARR width=8 seqs=68 chrX:2572837-2572917 ( 28) GAGAGAGA 1 chrIII:869965-870045 ( 31) GAGAGAGA 1 chrIV:8002721-8002801 ( 9) GAGAGAGA 1 chrV:6679859-6679939 ( 64) GAGAGAGA 1 chrI:9116195-9116275 ( 34) GAGAGAGA 1 chrX:852862-852942 ( 45) GAGAGAGA 1 chrX:3040770-3040850 ( 14) GAGAGAGA 1 chrX:6806689-6806769 ( 17) GAGAGAGA 1 chrIV:8008359-8008439 ( 15) GAGAGAGA 1 chrI:3246542-3246622 ( 51) GAGAGAGA 1 chrX:1224049-1224129 ( 22) GAGAGAAA 1 chrX:7464561-7464641 ( 49) GAGAGAAA 1 chrIV:5078102-5078182 ( 36) GAGAGAGG 1 chrIII:7656608-7656688 ( 14) GAGAGAGG 1 chrX:13881949-13882029 ( 35) GAGAGAAG 1 chrX:1529238-1529318 ( 38) GGGAGAGA 1 chrV:1570827-1570907 ( 52) GAGAGGGA 1 chrIV:9267737-9267817 ( 6) GAGAAAGA 1 chrX:10395929-10396009 ( 41) GAGAGACA 1 chrIII:12894343-12894423 ( 49) GAGAGACA 1 chrX:2046425-2046505 ( 71) GAGAGGAA 1 chrII:8769568-8769648 ( 34) GAGAGACA 1 chrX:5344107-5344187 ( 57) GAGAGGAA 1 chrII:6831929-6832009 ( 64) GAGAGACA 1 chrI:6279391-6279471 ( 6) GAGAAAAA 1 chrIII:9969485-9969565 ( 67) GAGAAAAA 1 chrII:11537925-11538005 ( 70) GGGAGAAA 1 chrI:4746904-4746984 ( 43) GAGAGGAA 1 chrIII:11363005-11363085 ( 70) GAGAAAGG 1 chrX:16447214-16447294 ( 15) GGGAGAGG 1 chrI:13263080-13263160 ( 69) GAGAAAGG 1 chrX:11210538-11210618 ( 14) GAGAGGGG 1 chrI:7194933-7195013 ( 71) GGGAGAGG 1 chrX:2706069-2706149 ( 68) GGGAGAGG 1 chrII:12987976-12988056 ( 42) GGGAGAGG 1 chrX:8201362-8201442 ( 43) GAGAGGAG 1 chrIII:9112637-9112717 ( 10) GAGAGACG 1 chrIV:11584162-11584242 ( 20) GAGAGGAG 1 chrX:2731654-2731734 ( 68) GGGAGAAG 1 chrI:3861663-3861743 ( 21) GAGAGACG 1 chrII:7090965-7091045 ( 15) GGGAGAAG 1 chrI:9447356-9447436 ( 60) GAGAAAAG 1 chrX:10849708-10849788 ( 14) GAGAGGAG 1 chrI:6577295-6577375 ( 8) GGGAAAGA 1 chrII:7813459-7813539 ( 38) GGGAAAGA 1 chrIV:3807836-3807916 ( 39) GGGAGGGA 1 chrI:8984010-8984090 ( 63) GGGAGGGA 1 chrIV:11573563-11573643 ( 5) GAGAAGAA 1 chrX:7713076-7713156 ( 53) GAGAAGAA 1 chrII:11535640-11535720 ( 68) GGGAGACA 1 chrX:4498555-4498635 ( 5) GAGAGGCA 1 chrII:10504956-10505036 ( 25) GGGAGGAA 1 chrIV:8009487-8009567 ( 49) GAGAAGGG 1 chrIII:13720513-13720593 ( 67) GGGAGGGG 1 chrI:11092114-11092194 ( 7) GGGAAAGG 1 chrV:14504903-14504983 ( 68) GGGAGGAG 1 chrII:2461382-2461462 ( 40) GGGAAAAG 1 chrII:11543167-11543247 ( 19) GAGAAACG 1 chrV:20410469-20410549 ( 63) GAGAAGAG 1 chrIV:4588605-4588685 ( 34) GAGAAGAG 1 chrX:2452888-2452968 ( 63) GGGAGACG 1 chrX:11306729-11306809 ( 30) GAGAAGAG 1 chrX:10846400-10846480 ( 22) GGGAGGAG 1 chrII:13847541-13847621 ( 72) GAGAGATA 1 chrX:9931582-9931662 ( 28) GAGAGATG 1 chrIII:9176133-9176213 ( 46) GAGAGATG 1 chrIII:12576001-12576081 ( 42) GGGAAACA 1 chrX:4881452-4881532 ( 24) GGGAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.8321 E= 8.5e-007 -1273 -1273 193 -1273 147 -1273 31 -1273 -1273 -1273 193 -1273 204 -1273 -1273 -1273 20 -1273 146 -1273 150 -1273 24 -1273 53 -57 71 -240 116 -1273 80 -1273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 8.5e-007 0.000000 0.000000 1.000000 0.000000 0.676471 0.000000 0.323529 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.279412 0.000000 0.720588 0.000000 0.691176 0.000000 0.308824 0.000000 0.352941 0.176471 0.426471 0.044118 0.544118 0.000000 0.455882 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARR MEME-1 regular expression -------------------------------------------------------------------------------- G[AG]GA[GA][AG][GA][AG] -------------------------------------------------------------------------------- Time 9.85 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTYYYTC MEME-2 width = 8 sites = 60 llr = 448 E-value = 6.3e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTYYYTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::2::::: pos.-specific C :a2546:8 probability G :::1:::: matrix T a:6474a2 bits 2.1 * * 1.9 * * 1.7 ** * 1.5 ** * Relative 1.3 ** ** Entropy 1.0 ** **** (10.8 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus CTCT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYYYTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:1559213-1559293 64 2.59e-05 tctctgaatc tctttctc tctctcact chrIII:9705336-9705416 68 2.59e-05 CTACTCACTC TCTCTCTC GCTCA chrX:16414720-16414800 32 2.59e-05 CCTCTATCTC TCTCTCTC CCTGTGTTCT chrII:10371056-10371136 28 2.59e-05 GGATTTCTCG TCTCTCTC GCACATCTAT chrIII:5318577-5318657 46 2.59e-05 cctccttctt tctttctc tctctctatc chrI:7194933-7195013 22 2.59e-05 ACGCAGACAT TCTTTCTC CCGGGGACCG chrX:4513793-4513873 29 2.59e-05 ACCCTTCTTT TCTCTCTC CGTAGGGCTA chrI:9402930-9403010 17 2.59e-05 GGTTCTTTTT TCTTTCTC TTCCTCTTGC chrIII:7656608-7656688 58 2.59e-05 GAGGTACCCT TCTCTCTC ACTCACAGTT chrX:7151626-7151706 69 4.90e-05 GTCTCCTTTC TCTCTTTC TTTC chrX:17562398-17562478 73 4.90e-05 GGATGACCAT TCTTTTTC chrV:1577444-1577524 12 4.90e-05 ATCTTCATGC TCTTTTTC CCCCGTTCTA chrI:9435266-9435346 23 4.90e-05 CCTTCCTCAC TCTCTTTC CGTCCGTTTG chrX:2901256-2901336 15 4.90e-05 ACCTCCTCCT TCTTTTTC TTCTCCATAG chrV:1570827-1570907 65 4.90e-05 AGGGAGGTCA TCTTTTTC TGCACAGA chrIII:13720513-13720593 5 7.80e-05 GTCC TCTTCCTC CGAGTTGCCT chrX:13948328-13948408 70 7.80e-05 CTTCTGCCAC TCTTCCTC TTT chrV:14501323-14501403 52 7.80e-05 TCGTATACCC TCTCCCTC ACTCAAACAG chrIV:8819566-8819646 4 7.80e-05 TTT TCTCCCTC TGTATATCTC chrI:9734108-9734188 47 7.80e-05 AGCGGCCACT tcttcctc ctcctcctcc chrI:10822542-10822622 35 7.80e-05 AACCTGCGTC TCTTCCTC TCCACACTAT chrX:2879790-2879870 51 1.04e-04 ttcttcttca tcttcttc gtctCACCGG chrI:11197226-11197306 65 1.04e-04 GATTCCTTTG TCTCCTTC TGGGCTGC chrX:1801101-1801181 3 1.56e-04 AT TCCCTCTC ACTTTTCCCC chrII:4571284-4571364 49 1.56e-04 CAAAGGCCTA TCTTTCTT GGTTTCTGCT chrIII:5107365-5107445 29 1.56e-04 CTTCTCTGCG TCTCTCTT GTCCCACAAG chrX:10849708-10849788 41 1.56e-04 ATGATGTCCA TCCCTCTC GTATCTCTAC chrX:432483-432563 32 2.03e-04 CCAAAATGTA TCTTTTTT CAGCCACCGC chrIII:12609631-12609711 69 2.03e-04 GATGTGGCTT TCCTTTTC GATC chrI:14805031-14805111 30 2.03e-04 CCCACCATCA TCTCTTTT GGCCGCTGGT chrII:5228807-5228887 12 2.03e-04 ATTGGAGAAC TCCTTTTC ATTGGCTTCA chrI:8046587-8046667 13 2.03e-04 AACTGCGGGT TCTCTTTT GATGATGAAG chrIV:175872-175952 38 2.03e-04 GTCTGTTGTG TCCCTTTC CCTTTTCTCA chrI:8984010-8984090 52 2.03e-04 GATTTCCGTC TCCTTTTC CGAGGGAGGG chrX:5360806-5360886 44 2.03e-04 CGGAGGACGC TCTCTTTT GCATGTCAAC chrII:6522786-6522866 19 2.30e-04 GCATCTTCTC TCACTCTC TGTTCAGGCG chrI:4746904-4746984 32 2.30e-04 TGGGAGCCAG TCATTCTC TTTGAGAGGA chrII:10075954-10076034 27 2.30e-04 TTTTTTTCTC TCATTCTC TAGAGTTCTC chrX:13143351-13143431 54 2.54e-04 ACCATCTGCT TCACTTTC CCTTCAGCTA chrV:14646373-14646453 5 2.54e-04 TGCC TCACTTTC TCCTGTCCCC chrX:5099947-5100027 2 3.12e-04 C TCCTCCTC CTTCTTACTA chrX:8392911-8392991 14 3.12e-04 GATTTGCTCA TCCTCCTC CTTCAGGCCA chrIV:173132-173212 68 3.12e-04 CGAAGGACCA TCCCCCTC CTCAA chrI:14325426-14325506 51 3.12e-04 atcctcctcc tcctcctc ctGTTGCCTA chrX:10396706-10396786 8 3.12e-04 ATCGCTC TCTCCCTT CACTGTATTT chrII:11636804-11636884 10 3.64e-04 GTGGTTCGT TCTTCTTT GTCCTCCTAT chrII:11979594-11979674 53 3.64e-04 GAGCAATCGC TCCTCTTC GGACCTGAAA chrII:4517409-4517489 2 3.64e-04 T TCTTCTTT TACATAATTC chrX:1222584-1222664 69 3.95e-04 TTTTACCACC TCACCCTC TCGC chrX:10623302-10623382 18 3.95e-04 AGAGGATCTC TCACCCTC CCCACACCCT chrIII:11363005-11363085 57 4.22e-04 TCGAGATCCT TCACCTTC TTCTAGAGAA chrII:5667594-5667674 47 4.84e-04 CTGCCAAAAA TCTGTCTC GGTGGGTGCT chrII:13847541-13847621 30 4.84e-04 AACCAGGCGG TCCCTTTT TGTGTGAAGA chrIII:7824886-7824966 23 5.21e-04 CACCTCCTTG TCTGTTTC GAAGATGGGG chrIII:1054260-1054340 54 5.21e-04 ATATCTCTCC TCACTCTT CCACTTTTCC chrX:3887788-3887868 73 5.21e-04 TGCGGTGATC TCACTCTT chrV:9422891-9422971 39 5.21e-04 CGCTGGTATC TCTGTTTC TCTAAATTCT chrX:7562814-7562894 23 6.13e-04 GGTCGCACAG TCCCCTTT CACCATAAAT chrII:10504956-10505036 36 7.01e-04 GGAGGAAACG TTTCTCTC GTCTGTCCAC chrII:6831929-6832009 48 8.27e-04 GTGGGAGGCC TTTCCCTC TGAACACAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYYYTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:1559213-1559293 2.6e-05 63_[+2]_9 chrIII:9705336-9705416 2.6e-05 67_[+2]_5 chrX:16414720-16414800 2.6e-05 31_[+2]_41 chrII:10371056-10371136 2.6e-05 27_[+2]_45 chrIII:5318577-5318657 2.6e-05 45_[+2]_27 chrI:7194933-7195013 2.6e-05 21_[+2]_51 chrX:4513793-4513873 2.6e-05 28_[+2]_44 chrI:9402930-9403010 2.6e-05 16_[+2]_56 chrIII:7656608-7656688 2.6e-05 57_[+2]_15 chrX:7151626-7151706 4.9e-05 68_[+2]_4 chrX:17562398-17562478 4.9e-05 72_[+2] chrV:1577444-1577524 4.9e-05 11_[+2]_61 chrI:9435266-9435346 4.9e-05 22_[+2]_50 chrX:2901256-2901336 4.9e-05 14_[+2]_58 chrV:1570827-1570907 4.9e-05 64_[+2]_8 chrIII:13720513-13720593 7.8e-05 4_[+2]_68 chrX:13948328-13948408 7.8e-05 69_[+2]_3 chrV:14501323-14501403 7.8e-05 51_[+2]_21 chrIV:8819566-8819646 7.8e-05 3_[+2]_69 chrI:9734108-9734188 7.8e-05 46_[+2]_26 chrI:10822542-10822622 7.8e-05 34_[+2]_38 chrX:2879790-2879870 0.0001 50_[+2]_22 chrI:11197226-11197306 0.0001 64_[+2]_8 chrX:1801101-1801181 0.00016 2_[+2]_70 chrII:4571284-4571364 0.00016 48_[+2]_24 chrIII:5107365-5107445 0.00016 28_[+2]_44 chrX:10849708-10849788 0.00016 40_[+2]_32 chrX:432483-432563 0.0002 31_[+2]_41 chrIII:12609631-12609711 0.0002 68_[+2]_4 chrI:14805031-14805111 0.0002 29_[+2]_43 chrII:5228807-5228887 0.0002 11_[+2]_61 chrI:8046587-8046667 0.0002 12_[+2]_60 chrIV:175872-175952 0.0002 37_[+2]_35 chrI:8984010-8984090 0.0002 51_[+2]_21 chrX:5360806-5360886 0.0002 43_[+2]_29 chrII:6522786-6522866 0.00023 18_[+2]_54 chrI:4746904-4746984 0.00023 31_[+2]_41 chrII:10075954-10076034 0.00023 26_[+2]_46 chrX:13143351-13143431 0.00025 53_[+2]_19 chrV:14646373-14646453 0.00025 4_[+2]_68 chrX:5099947-5100027 0.00031 1_[+2]_71 chrX:8392911-8392991 0.00031 13_[+2]_59 chrIV:173132-173212 0.00031 67_[+2]_5 chrI:14325426-14325506 0.00031 50_[+2]_22 chrX:10396706-10396786 0.00031 7_[+2]_65 chrII:11636804-11636884 0.00036 9_[+2]_63 chrII:11979594-11979674 0.00036 52_[+2]_20 chrII:4517409-4517489 0.00036 1_[+2]_71 chrX:1222584-1222664 0.00039 68_[+2]_4 chrX:10623302-10623382 0.00039 17_[+2]_55 chrIII:11363005-11363085 0.00042 56_[+2]_16 chrII:5667594-5667674 0.00048 46_[+2]_26 chrII:13847541-13847621 0.00048 29_[+2]_43 chrIII:7824886-7824966 0.00052 22_[+2]_50 chrIII:1054260-1054340 0.00052 53_[+2]_19 chrX:3887788-3887868 0.00052 72_[+2] chrV:9422891-9422971 0.00052 38_[+2]_34 chrX:7562814-7562894 0.00061 22_[+2]_50 chrII:10504956-10505036 0.0007 35_[+2]_37 chrII:6831929-6832009 0.00083 47_[+2]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYYYTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTYYYTC width=8 seqs=60 chrI:1559213-1559293 ( 64) TCTTTCTC 1 chrIII:9705336-9705416 ( 68) TCTCTCTC 1 chrX:16414720-16414800 ( 32) TCTCTCTC 1 chrII:10371056-10371136 ( 28) TCTCTCTC 1 chrIII:5318577-5318657 ( 46) TCTTTCTC 1 chrI:7194933-7195013 ( 22) TCTTTCTC 1 chrX:4513793-4513873 ( 29) TCTCTCTC 1 chrI:9402930-9403010 ( 17) TCTTTCTC 1 chrIII:7656608-7656688 ( 58) TCTCTCTC 1 chrX:7151626-7151706 ( 69) TCTCTTTC 1 chrX:17562398-17562478 ( 73) TCTTTTTC 1 chrV:1577444-1577524 ( 12) TCTTTTTC 1 chrI:9435266-9435346 ( 23) TCTCTTTC 1 chrX:2901256-2901336 ( 15) TCTTTTTC 1 chrV:1570827-1570907 ( 65) TCTTTTTC 1 chrIII:13720513-13720593 ( 5) TCTTCCTC 1 chrX:13948328-13948408 ( 70) TCTTCCTC 1 chrV:14501323-14501403 ( 52) TCTCCCTC 1 chrIV:8819566-8819646 ( 4) TCTCCCTC 1 chrI:9734108-9734188 ( 47) TCTTCCTC 1 chrI:10822542-10822622 ( 35) TCTTCCTC 1 chrX:2879790-2879870 ( 51) TCTTCTTC 1 chrI:11197226-11197306 ( 65) TCTCCTTC 1 chrX:1801101-1801181 ( 3) TCCCTCTC 1 chrII:4571284-4571364 ( 49) TCTTTCTT 1 chrIII:5107365-5107445 ( 29) TCTCTCTT 1 chrX:10849708-10849788 ( 41) TCCCTCTC 1 chrX:432483-432563 ( 32) TCTTTTTT 1 chrIII:12609631-12609711 ( 69) TCCTTTTC 1 chrI:14805031-14805111 ( 30) TCTCTTTT 1 chrII:5228807-5228887 ( 12) TCCTTTTC 1 chrI:8046587-8046667 ( 13) TCTCTTTT 1 chrIV:175872-175952 ( 38) TCCCTTTC 1 chrI:8984010-8984090 ( 52) TCCTTTTC 1 chrX:5360806-5360886 ( 44) TCTCTTTT 1 chrII:6522786-6522866 ( 19) TCACTCTC 1 chrI:4746904-4746984 ( 32) TCATTCTC 1 chrII:10075954-10076034 ( 27) TCATTCTC 1 chrX:13143351-13143431 ( 54) TCACTTTC 1 chrV:14646373-14646453 ( 5) TCACTTTC 1 chrX:5099947-5100027 ( 2) TCCTCCTC 1 chrX:8392911-8392991 ( 14) TCCTCCTC 1 chrIV:173132-173212 ( 68) TCCCCCTC 1 chrI:14325426-14325506 ( 51) TCCTCCTC 1 chrX:10396706-10396786 ( 8) TCTCCCTT 1 chrII:11636804-11636884 ( 10) TCTTCTTT 1 chrII:11979594-11979674 ( 53) TCCTCTTC 1 chrII:4517409-4517489 ( 2) TCTTCTTT 1 chrX:1222584-1222664 ( 69) TCACCCTC 1 chrX:10623302-10623382 ( 18) TCACCCTC 1 chrIII:11363005-11363085 ( 57) TCACCTTC 1 chrII:5667594-5667674 ( 47) TCTGTCTC 1 chrII:13847541-13847621 ( 30) TCCCTTTT 1 chrIII:7824886-7824966 ( 23) TCTGTTTC 1 chrIII:1054260-1054340 ( 54) TCACTCTT 1 chrX:3887788-3887868 ( 73) TCACTCTT 1 chrV:9422891-9422971 ( 39) TCTGTTTC 1 chrX:7562814-7562894 ( 23) TCCCCTTT 1 chrII:10504956-10505036 ( 36) TTTCTCTC 1 chrII:6831929-6832009 ( 48) TTTCCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYYYTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.95252 E= 6.3e-005 -1255 -1255 -1255 210 -1255 189 -1255 -281 -55 -27 -1255 140 -1255 98 -239 89 -1255 42 -1255 148 -1255 112 -1255 89 -1255 -1255 -1255 210 -1255 158 -1255 -11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYYYTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 6.3e-005 0.000000 0.000000 0.000000 1.000000 0.000000 0.966667 0.000000 0.033333 0.166667 0.216667 0.000000 0.616667 0.000000 0.516667 0.050000 0.433333 0.000000 0.350000 0.000000 0.650000 0.000000 0.566667 0.000000 0.433333 0.000000 0.000000 0.000000 1.000000 0.000000 0.783333 0.000000 0.216667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYYYTC MEME-2 regular expression -------------------------------------------------------------------------------- TC[TC][CT][TC][CT]T[CT] -------------------------------------------------------------------------------- Time 15.17 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTTTTTT MEME-3 width = 8 sites = 9 llr = 93 E-value = 3.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTTTTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2::::::: pos.-specific C 8a::::2: probability G :::::::: matrix T ::aaaa8a bits 2.1 **** * 1.9 ***** * 1.7 ***** * 1.5 ***** * Relative 1.3 ******** Entropy 1.0 ******** (14.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTTTTTT consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:432483-432563 70 1.09e-05 GAGTTTTCCC CCTTTTTT CCT chrI:14805031-14805111 73 1.09e-05 TTCCTTTTTG CCTTTTTT chrX:11072894-11072974 61 1.09e-05 CCCCAAAACA CCTTTTTT CCCGACTCGT chrI:4697617-4697697 19 1.09e-05 TTTCCACGTG CCTTTTTT GCAggtggtg chrX:9089662-9089742 67 1.09e-05 ATAGACGGCA CCTTTTTT GTCTTC chrV:20763566-20763646 18 2.11e-05 CCCCGAAGAG ACTTTTTT GGCGGCTTGG chrII:10075954-10076034 15 2.11e-05 CAGTCAAAAA ACTTTTTT TCTCTCATTC chrI:8046587-8046667 51 3.33e-05 CCGTGCTCTC CCTTTTCT CTTCACTCTG chrIV:175872-175952 46 3.33e-05 TGTCCCTTTC CCTTTTCT CAAGGAGACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:432483-432563 1.1e-05 69_[+3]_3 chrI:14805031-14805111 1.1e-05 72_[+3] chrX:11072894-11072974 1.1e-05 60_[+3]_12 chrI:4697617-4697697 1.1e-05 18_[+3]_54 chrX:9089662-9089742 1.1e-05 66_[+3]_6 chrV:20763566-20763646 2.1e-05 17_[+3]_55 chrII:10075954-10076034 2.1e-05 14_[+3]_58 chrI:8046587-8046667 3.3e-05 50_[+3]_22 chrIV:175872-175952 3.3e-05 45_[+3]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTTTTTT width=8 seqs=9 chrX:432483-432563 ( 70) CCTTTTTT 1 chrI:14805031-14805111 ( 73) CCTTTTTT 1 chrX:11072894-11072974 ( 61) CCTTTTTT 1 chrI:4697617-4697697 ( 19) CCTTTTTT 1 chrX:9089662-9089742 ( 67) CCTTTTTT 1 chrV:20763566-20763646 ( 18) ACTTTTTT 1 chrII:10075954-10076034 ( 15) ACTTTTTT 1 chrI:8046587-8046667 ( 51) CCTTTTCT 1 chrIV:175872-175952 ( 46) CCTTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8333 E= 3.8e+003 -13 157 -982 -982 -982 193 -982 -982 -982 -982 -982 210 -982 -982 -982 210 -982 -982 -982 210 -982 -982 -982 210 -982 -23 -982 174 -982 -982 -982 210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 3.8e+003 0.222222 0.777778 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.222222 0.000000 0.777778 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTTTT MEME-3 regular expression -------------------------------------------------------------------------------- [CA]CTTTT[TC]T -------------------------------------------------------------------------------- Time 18.75 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTCCTCC MEME-4 width = 8 sites = 13 llr = 128 E-value = 9.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTCCTCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::3::::: pos.-specific C aa:aa:a8 probability G :::::::: matrix T ::7::a:2 bits 2.1 * 1.9 ** **** 1.7 ** **** 1.5 ** **** Relative 1.3 ******** Entropy 1.0 ******** (14.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCCTCC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCTCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:6831070-6831150 8 1.72e-05 CCATTGC CCTCCTCC CACAGGACAG chrII:8769568-8769648 1 1.72e-05 . CCTCCTCC GAATGCGGCG chrX:2901256-2901336 6 1.72e-05 CAAAA CCTCCTCC TTCTTTTTCT chrII:10065598-10065678 50 1.72e-05 TGCGGGAGAC CCTCCTCC CGTCTCTGTG chrI:14325426-14325506 43 1.72e-05 ACAGGctcat cctcctcc tcctcctcct chrI:9734108-9734188 57 1.72e-05 tcttcctcct cctcctcc tgctTTTCAC chrI:13371344-13371424 63 3.51e-05 TTTCCATACT CCACCTCC ACCTACTTCT chrV:1577444-1577524 61 3.51e-05 CCGGGTCGGA CCACCTCC ATCCGACCTC chrIII:7824886-7824966 12 3.51e-05 ACCTGCTCCA CCACCTCC TTGTCTGTTT chrIV:3337402-3337482 30 3.51e-05 tccccagcca ccacctcc ttgctgctgt chrIII:9705336-9705416 27 5.05e-05 TGCCCGTCGT CCTCCTCT GCTGTCCCGG chrX:16414720-16414800 19 5.05e-05 GGCGGTGTTC CCTCCTCT ATCTCTCTCT chrX:3467503-3467583 19 5.05e-05 TCGTGGCCGC CCTCCTCT CACATTCGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCTCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6831070-6831150 1.7e-05 7_[+4]_65 chrII:8769568-8769648 1.7e-05 [+4]_72 chrX:2901256-2901336 1.7e-05 5_[+4]_67 chrII:10065598-10065678 1.7e-05 49_[+4]_23 chrI:14325426-14325506 1.7e-05 42_[+4]_30 chrI:9734108-9734188 1.7e-05 56_[+4]_16 chrI:13371344-13371424 3.5e-05 62_[+4]_10 chrV:1577444-1577524 3.5e-05 60_[+4]_12 chrIII:7824886-7824966 3.5e-05 11_[+4]_61 chrIV:3337402-3337482 3.5e-05 29_[+4]_43 chrIII:9705336-9705416 5e-05 26_[+4]_46 chrX:16414720-16414800 5e-05 18_[+4]_54 chrX:3467503-3467583 5e-05 18_[+4]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCTCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTCCTCC width=8 seqs=13 chrII:6831070-6831150 ( 8) CCTCCTCC 1 chrII:8769568-8769648 ( 1) CCTCCTCC 1 chrX:2901256-2901336 ( 6) CCTCCTCC 1 chrII:10065598-10065678 ( 50) CCTCCTCC 1 chrI:14325426-14325506 ( 43) CCTCCTCC 1 chrI:9734108-9734188 ( 57) CCTCCTCC 1 chrI:13371344-13371424 ( 63) CCACCTCC 1 chrV:1577444-1577524 ( 61) CCACCTCC 1 chrIII:7824886-7824966 ( 12) CCACCTCC 1 chrIV:3337402-3337482 ( 30) CCACCTCC 1 chrIII:9705336-9705416 ( 27) CCTCCTCT 1 chrX:16414720-16414800 ( 19) CCTCCTCT 1 chrX:3467503-3467583 ( 19) CCTCCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCTCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.985 E= 9.4e+003 -1035 193 -1035 -1035 -1035 193 -1035 -1035 34 -1035 -1035 157 -1035 193 -1035 -1035 -1035 193 -1035 -1035 -1035 -1035 -1035 210 -1035 193 -1035 -1035 -1035 156 -1035 -2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCTCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 9.4e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.307692 0.000000 0.000000 0.692308 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.769231 0.000000 0.230769 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCTCC MEME-4 regular expression -------------------------------------------------------------------------------- CC[TA]CCTC[CT] -------------------------------------------------------------------------------- Time 22.26 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCAATT MEME-5 width = 8 sites = 2 llr = 23 E-value = 1.0e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCAATT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::aa:: pos.-specific C :::a:::: probability G :::::::: matrix T aaa:::aa bits 2.1 *** **** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (16.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCAATT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCAATT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:1578928-1579008 22 1.07e-05 ACAAATTTCC TTTCAATT CAAACGATAG chrX:21142-21222 17 1.07e-05 tatcgagagc tttcaatt aagtataatc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCAATT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:1578928-1579008 1.1e-05 21_[+5]_51 chrX:21142-21222 1.1e-05 16_[+5]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCAATT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCAATT width=8 seqs=2 chrV:1578928-1579008 ( 22) TTTCAATT 1 chrX:21142-21222 ( 17) TTTCAATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCAATT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.3073 E= 1.0e+005 -765 -765 -765 209 -765 -765 -765 209 -765 -765 -765 209 -765 193 -765 -765 203 -765 -765 -765 203 -765 -765 -765 -765 -765 -765 209 -765 -765 -765 209 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCAATT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.0e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCAATT MEME-5 regular expression -------------------------------------------------------------------------------- TTTCAATT -------------------------------------------------------------------------------- Time 25.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:7158141-7158221 1.92e-01 80 chrIV:9267737-9267817 4.33e-01 80 chrI:2708363-2708443 8.28e-01 80 chrI:3246542-3246622 1.85e-01 46_[+1(1.67e-05)]_[+1(5.02e-05)]_18 chrI:8028814-8028894 9.65e-01 80 chrIV:3767951-3768031 3.90e-02 80 chrX:14577830-14577910 1.00e+00 80 chrV:153993-154073 5.18e-02 80 chrX:11366125-11366205 7.31e-01 80 chrIII:9176133-9176213 2.07e-01 80 chrIII:10666783-10666863 3.52e-01 80 chrX:3223308-3223388 2.97e-01 80 chrII:10504956-10505036 2.13e-02 80 chrX:2583383-2583463 3.61e-02 80 chrI:7140702-7140782 6.33e-01 80 chrI:1967138-1967218 6.01e-01 80 chrIII:7656608-7656688 1.08e-04 13_[+1(5.02e-05)]_36_[+2(2.59e-05)]_\ 15 chrIII:7378258-7378338 1.86e-03 80 chrI:10822542-10822622 2.50e-03 34_[+2(7.80e-05)]_38 chrV:152294-152374 3.00e-01 80 chrII:12987976-12988056 5.98e-01 80 chrX:2878239-2878319 6.08e-01 80 chrX:10396706-10396786 9.46e-02 80 chrX:16457266-16457346 2.64e-01 80 chrX:10846400-10846480 6.96e-01 80 chrX:2706069-2706149 6.17e-01 80 chrII:10075954-10076034 6.05e-03 14_[+3(2.11e-05)]_58 chrI:4746904-4746984 1.95e-02 80 chrX:11600617-11600697 9.98e-01 80 chrX:11306729-11306809 7.77e-01 80 chrI:9402930-9403010 2.12e-04 16_[+2(2.59e-05)]_56 chrX:4498555-4498635 7.34e-01 80 chrI:9734108-9734188 2.92e-05 50_[+4(1.72e-05)]_22 chrII:11537925-11538005 1.67e-02 80 chrX:5641495-5641575 9.96e-01 80 chrIV:8008359-8008439 2.01e-01 12_[+1(1.67e-05)]_60 chrX:10849708-10849788 3.58e-02 80 chrII:11890818-11890898 6.67e-01 80 chrI:14325426-14325506 8.42e-03 42_[+4(1.72e-05)]_1_[+4(1.72e-05)]_\ 21 chrII:13847541-13847621 6.48e-03 80 chrII:14166350-14166430 7.27e-01 80 chrII:15080704-15080784 2.33e-01 80 chrI:7942659-7942739 2.61e-01 80 chrI:14146840-14146920 9.88e-01 80 chrX:4513793-4513873 1.13e-02 28_[+2(2.59e-05)]_44 chrX:10596668-10596748 9.77e-01 80 chrIII:7383412-7383492 1.77e-01 80 chrIV:173132-173212 3.85e-02 80 chrX:6806689-6806769 3.53e-02 10_[+1(1.67e-05)]_[+1(5.02e-05)]_54 chrV:14498356-14498436 9.37e-01 80 chrX:5360806-5360886 1.72e-02 80 chrIV:8819566-8819646 9.10e-02 3_[+2(7.80e-05)]_69 chrI:532779-532859 9.29e-01 80 chrI:7214874-7214954 9.29e-01 80 chrX:9931582-9931662 7.92e-01 80 chrX:5518495-5518575 2.36e-01 80 chrX:21142-21222 8.98e-02 16_[+5(1.07e-05)]_56 chrIV:174344-174424 9.28e-01 80 chrI:7713666-7713746 4.57e-02 80 chrX:7965656-7965736 3.17e-01 80 chrIII:179394-179474 6.90e-01 80 chrII:4517409-4517489 8.38e-02 80 chrII:5667594-5667674 2.46e-01 80 chrIV:12617384-12617464 8.29e-01 80 chrX:2452888-2452968 6.94e-01 80 chrI:14960452-14960532 3.51e-01 80 chrI:8984010-8984090 9.56e-04 80 chrIII:5107365-5107445 4.61e-02 80 chrIII:9969485-9969565 2.51e-01 80 chrI:10069965-10070045 6.51e-02 80 chrI:447839-447919 9.94e-01 80 chrIII:11887855-11887935 4.78e-02 60_[+5(1.07e-05)]_12 chrX:4881452-4881532 5.69e-01 80 chrI:9447356-9447436 3.70e-03 80 chrX:7464561-7464641 2.05e-01 48_[+1(3.23e-05)]_24 chrII:10065598-10065678 2.02e-02 49_[+4(1.72e-05)]_23 chrX:13881949-13882029 6.02e-02 34_[+1(6.69e-05)]_38 chrIV:13090030-13090110 3.26e-01 80 chrIV:175872-175952 2.51e-03 45_[+3(3.33e-05)]_27 chrIV:4588605-4588685 1.80e-01 80 chrIV:5078102-5078182 1.60e-01 35_[+1(5.02e-05)]_37 chrI:13997031-13997111 8.85e-01 80 chrX:9089662-9089742 6.53e-03 66_[+3(1.09e-05)]_6 chrV:1570827-1570907 1.40e-03 64_[+2(4.90e-05)]_8 chrIII:8132626-8132706 9.91e-01 80 chrII:9263122-9263202 9.72e-01 80 chrI:11209985-11210065 2.93e-01 80 chrII:7090965-7091045 4.43e-01 80 chrI:11077664-11077744 8.44e-01 80 chrI:14141758-14141838 1.19e-01 80 chrX:3040770-3040850 6.73e-02 13_[+1(1.67e-05)]_59 chrI:7194933-7195013 2.52e-03 21_[+2(2.59e-05)]_51 chrI:14067519-14067599 9.05e-01 80 chrX:3467503-3467583 9.73e-03 18_[+4(5.05e-05)]_54 chrII:11979594-11979674 3.11e-02 80 chrIV:3337402-3337482 5.37e-02 29_[+4(3.51e-05)]_43 chrI:6279391-6279471 4.03e-01 80 chrV:1578928-1579008 1.13e-02 21_[+5(1.07e-05)]_51 chrX:14776483-14776563 6.34e-01 80 chrIV:572683-572763 1.25e-02 2_[+4(6.65e-05)]_70 chrI:3861663-3861743 2.14e-01 80 chrIII:13713944-13714024 8.04e-01 80 chrI:12592986-12593066 5.14e-01 80 chrIII:5318577-5318657 1.49e-03 45_[+2(2.59e-05)]_27 chrII:6831929-6832009 6.67e-02 80 chrV:19629693-19629773 1.61e-01 80 chrX:2700860-2700940 2.01e-01 80 chrX:7562814-7562894 4.21e-01 80 chrV:14501323-14501403 6.54e-02 51_[+2(7.80e-05)]_21 chrV:5023594-5023674 1.00e+00 80 chrX:5344107-5344187 2.67e-01 80 chrX:15725706-15725786 7.11e-01 80 chrV:20423181-20423261 4.00e-01 80 chrV:9422891-9422971 8.35e-02 80 chrX:11210538-11210618 5.10e-01 80 chrX:852862-852942 1.30e-02 28_[+1(5.02e-05)]_6_[+1(1.67e-05)]_\ 30 chrI:8046587-8046667 1.20e-03 50_[+3(3.33e-05)]_22 chrI:11092114-11092194 4.62e-01 80 chrX:2924427-2924507 1.18e-01 80 chrI:11197226-11197306 6.62e-02 80 chrII:4571284-4571364 1.59e-02 80 chrII:10371056-10371136 1.10e-02 27_[+2(2.59e-05)]_45 chrX:13948328-13948408 1.20e-02 69_[+2(7.80e-05)]_3 chrIV:3807836-3807916 5.00e-01 80 chrII:5228807-5228887 5.70e-03 80 chrX:2731654-2731734 8.11e-02 80 chrX:2513813-2513893 7.29e-01 80 chrI:4697617-4697697 5.04e-03 18_[+3(1.09e-05)]_54 chrII:11535640-11535720 1.41e-01 80 chrI:3250753-3250833 3.16e-01 80 chrX:8805653-8805733 5.53e-01 80 chrV:20410469-20410549 5.94e-01 80 chrI:648565-648645 4.70e-01 80 chrX:8569407-8569487 6.13e-03 80 chrI:9116195-9116275 2.90e-02 33_[+1(1.67e-05)]_39 chrII:11543167-11543247 7.83e-01 80 chrX:10593978-10594058 5.40e-01 80 chrX:11072894-11072974 1.75e-02 60_[+3(1.09e-05)]_12 chrX:2879790-2879870 1.52e-01 80 chrIII:4407669-4407749 2.32e-01 80 chrV:1568920-1569000 4.06e-02 [+5(4.09e-05)]_72 chrX:15877145-15877225 7.41e-01 80 chrX:4576435-4576515 8.62e-01 80 chrX:3887788-3887868 3.55e-01 80 chrII:8224983-8225063 8.59e-01 80 chrX:2901256-2901336 1.09e-04 5_[+4(1.72e-05)]_1_[+2(4.90e-05)]_\ 58 chrI:8281769-8281849 8.15e-02 80 chrX:10623302-10623382 2.67e-01 80 chrX:10074350-10074430 1.13e-01 80 chrV:14646373-14646453 1.40e-01 80 chrII:8769568-8769648 1.41e-02 [+4(1.72e-05)]_72 chrI:7706134-7706214 1.11e-01 80 chrI:9435266-9435346 8.57e-03 22_[+2(4.90e-05)]_50 chrI:6154438-6154518 3.92e-01 80 chrV:1572794-1572874 7.74e-01 80 chrII:6188990-6189070 5.25e-02 80 chrIII:12576001-12576081 8.20e-01 80 chrIV:11584162-11584242 5.77e-02 80 chrX:11297061-11297141 9.99e-01 80 chrII:6831070-6831150 3.18e-02 7_[+4(1.72e-05)]_65 chrIII:13720513-13720593 3.68e-03 4_[+2(7.80e-05)]_68 chrX:14027046-14027126 5.53e-02 80 chrX:10594961-10595041 4.31e-01 80 chrII:7813459-7813539 3.28e-01 80 chrIV:9263937-9264017 8.86e-01 80 chrIII:9112637-9112717 5.58e-01 80 chrV:14460882-14460962 4.99e-01 80 chrV:6679859-6679939 7.02e-02 63_[+1(1.67e-05)]_9 chrI:3438166-3438246 1.59e-01 80 chrIII:1054260-1054340 5.54e-03 80 chrI:8978084-8978164 4.58e-01 80 chrIV:2398562-2398642 1.00e+00 80 chrI:2404777-2404857 4.43e-01 80 chrX:6040934-6041014 7.65e-01 80 chrX:12686506-12686586 9.97e-01 80 chrV:19242766-19242846 1.54e-01 80 chrX:16414720-16414800 2.76e-03 18_[+4(5.05e-05)]_1_[+2(2.59e-05)]_\ 45 chrX:3102962-3103042 9.99e-01 80 chrX:7215603-7215683 2.96e-01 80 chrI:6577295-6577375 5.69e-02 80 chrX:2046425-2046505 4.45e-01 80 chrII:2461382-2461462 2.84e-01 80 chrX:9637226-9637306 9.08e-01 80 chrIV:8002721-8002801 5.97e-02 8_[+1(1.67e-05)]_64 chrI:13263080-13263160 7.74e-02 80 chrV:19308229-19308309 7.67e-01 80 chrII:9354672-9354752 9.66e-02 80 chrIV:12545940-12546020 1.45e-01 80 chrV:8950070-8950150 2.35e-01 80 chrX:3465384-3465464 3.17e-01 80 chrIII:347109-347189 3.57e-01 80 chrX:8392911-8392991 4.25e-03 14_[+4(1.72e-05)]_58 chrII:5226490-5226570 7.73e-01 80 chrIV:14071653-14071733 1.30e-01 80 chrX:15102522-15102602 8.13e-01 80 chrX:2520752-2520832 7.36e-02 80 chrV:20763566-20763646 8.08e-02 17_[+3(2.11e-05)]_55 chrV:6470268-6470348 1.05e-01 80 chrIII:12894343-12894423 2.94e-01 80 chrII:3962515-3962595 9.51e-01 80 chrX:1222584-1222664 1.24e-02 80 chrX:5205767-5205847 3.56e-01 80 chrV:9617021-9617101 9.93e-01 80 chrIII:7824886-7824966 6.79e-04 11_[+4(3.51e-05)]_61 chrX:2780055-2780135 5.24e-01 80 chrII:7084566-7084646 3.52e-01 80 chrX:8201362-8201442 5.28e-01 80 chrX:16525817-16525897 2.52e-01 80 chrX:7713076-7713156 4.24e-01 80 chrX:1224049-1224129 1.85e-01 21_[+1(3.23e-05)]_51 chrIV:8009487-8009567 6.89e-02 80 chrIII:9705336-9705416 5.88e-04 26_[+4(5.05e-05)]_31_[+2(2.59e-05)]_\ 7 chrIV:11600367-11600447 5.26e-01 80 chrII:11636804-11636884 3.56e-02 80 chrX:15277944-15278024 8.54e-01 80 chrX:4157966-4158046 7.27e-01 80 chrX:1801101-1801181 1.65e-02 80 chrII:9939586-9939666 9.97e-01 80 chrI:1559213-1559293 2.55e-02 63_[+2(2.59e-05)]_9 chrX:13143351-13143431 2.99e-02 80 chrV:1577444-1577524 1.58e-03 11_[+2(4.90e-05)]_41_[+4(3.51e-05)]_\ 12 chrX:2871163-2871243 7.39e-01 80 chrV:15065248-15065328 5.28e-01 80 chrX:12188672-12188752 4.48e-01 80 chrI:14805031-14805111 2.53e-05 6_[+4(1.72e-05)]_58_[+3(1.09e-05)] chrII:6522786-6522866 1.02e-01 80 chrIV:11573563-11573643 4.46e-02 80 chrX:3683178-3683258 6.67e-02 80 chrI:6843278-6843358 8.17e-01 80 chrV:1585761-1585841 9.23e-01 80 chrX:2907599-2907679 3.48e-01 80 chrX:17562398-17562478 1.70e-02 72_[+2(4.90e-05)] chrX:16447214-16447294 3.93e-02 80 chrIII:12609631-12609711 1.41e-02 80 chrV:14504903-14504983 2.11e-01 80 chrIII:869965-870045 3.95e-02 30_[+1(1.67e-05)]_42 chrX:3655768-3655848 8.61e-01 80 chrI:13371344-13371424 4.78e-03 62_[+4(3.51e-05)]_10 chrV:20455762-20455842 9.63e-01 80 chrII:6409220-6409300 5.33e-01 80 chrII:5933288-5933368 1.69e-01 80 chrI:11179320-11179400 5.13e-01 80 chrIII:11363005-11363085 1.89e-02 80 chrX:432483-432563 5.32e-05 31_[+3(6.54e-05)]_30_[+3(1.09e-05)]_\ 3 chrX:7151626-7151706 2.97e-02 68_[+2(4.90e-05)]_4 chrX:1529238-1529318 2.22e-01 80 chrX:10395929-10396009 5.88e-02 80 chrX:5099947-5100027 5.36e-03 2_[+4(1.72e-05)]_70 chrX:2572837-2572917 4.68e-02 27_[+1(1.67e-05)]_45 chrI:7709124-7709204 9.08e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************