******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/hmg-11.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:2826976-2827056 1.0000 80 chrI:2126872-2126952 1.0000 80 chrII:12163142-12163222 1.0000 80 chrIV:833686-833766 1.0000 80 chrX:1096999-1097079 1.0000 80 chrI:13384679-13384759 1.0000 80 chrII:13847599-13847679 1.0000 80 chrV:8215304-8215384 1.0000 80 chrI:8011498-8011578 1.0000 80 chrI:3332773-3332853 1.0000 80 chrII:11916022-11916102 1.0000 80 chrI:13351203-13351283 1.0000 80 chrII:4323017-4323097 1.0000 80 chrIV:1804733-1804813 1.0000 80 chrIV:13272615-13272695 1.0000 80 chrI:9471254-9471334 1.0000 80 chrIII:5280422-5280502 1.0000 80 chrX:14744581-14744661 1.0000 80 chrV:4862857-4862937 1.0000 80 chrII:9557573-9557653 1.0000 80 chrIII:3127751-3127831 1.0000 80 chrIV:1842498-1842578 1.0000 80 chrII:401435-401515 1.0000 80 chrIV:13521970-13522050 1.0000 80 chrIII:1705487-1705567 1.0000 80 chrX:14711296-14711376 1.0000 80 chrIV:6053584-6053664 1.0000 80 chrIII:4335740-4335820 1.0000 80 chrIII:2089566-2089646 1.0000 80 chrIII:1591847-1591927 1.0000 80 chrIII:10604619-10604699 1.0000 80 chrII:3119041-3119121 1.0000 80 chrX:1062874-1062954 1.0000 80 chrV:6797107-6797187 1.0000 80 chrIII:2716381-2716461 1.0000 80 chrIV:264550-264630 1.0000 80 chrIV:5667351-5667431 1.0000 80 chrIV:4781230-4781310 1.0000 80 chrIV:15984425-15984505 1.0000 80 chrII:4456214-4456294 1.0000 80 chrIV:8986901-8986981 1.0000 80 chrI:1540578-1540658 1.0000 80 chrIII:12421884-12421964 1.0000 80 chrIV:10425297-10425377 1.0000 80 chrIV:17215221-17215301 1.0000 80 chrI:9114033-9114113 1.0000 80 chrX:5764910-5764990 1.0000 80 chrII:2787255-2787335 1.0000 80 chrII:15190226-15190306 1.0000 80 chrIII:4562247-4562327 1.0000 80 chrIV:12365088-12365168 1.0000 80 chrV:1049440-1049520 1.0000 80 chrIII:3220423-3220503 1.0000 80 chrIV:15275833-15275913 1.0000 80 chrIV:659717-659797 1.0000 80 chrI:10875243-10875323 1.0000 80 chrV:14368380-14368460 1.0000 80 chrV:7179003-7179083 1.0000 80 chrI:3412489-3412569 1.0000 80 chrIII:8127069-8127149 1.0000 80 chrIV:10062907-10062987 1.0000 80 chrX:12656775-12656855 1.0000 80 chrI:3059146-3059226 1.0000 80 chrI:7421419-7421499 1.0000 80 chrIII:11380664-11380744 1.0000 80 chrX:9774471-9774551 1.0000 80 chrIV:5848172-5848252 1.0000 80 chrX:16342420-16342500 1.0000 80 chrIV:8205467-8205547 1.0000 80 chrI:5999243-5999323 1.0000 80 chrIV:17331205-17331285 1.0000 80 chrX:954811-954891 1.0000 80 chrI:13650947-13651027 1.0000 80 chrIII:11208553-11208633 1.0000 80 chrII:13338090-13338170 1.0000 80 chrI:1717547-1717627 1.0000 80 chrI:3908538-3908618 1.0000 80 chrIII:11201252-11201332 1.0000 80 chrI:10237498-10237578 1.0000 80 chrI:3501237-3501317 1.0000 80 chrV:14447594-14447674 1.0000 80 chrI:4557218-4557298 1.0000 80 chrIII:13426136-13426216 1.0000 80 chrI:5673717-5673797 1.0000 80 chrIV:11038863-11038943 1.0000 80 chrIV:7400921-7401001 1.0000 80 chrI:716679-716759 1.0000 80 chrX:15441450-15441530 1.0000 80 chrIII:1430201-1430281 1.0000 80 chrIII:1243302-1243382 1.0000 80 chrI:3330948-3331028 1.0000 80 chrIV:3368810-3368890 1.0000 80 chrV:6538423-6538503 1.0000 80 chrX:15083957-15084037 1.0000 80 chrX:1965029-1965109 1.0000 80 chrX:2572788-2572868 1.0000 80 chrII:7615570-7615650 1.0000 80 chrI:14181327-14181407 1.0000 80 chrIV:13384079-13384159 1.0000 80 chrX:15614028-15614108 1.0000 80 chrX:370061-370141 1.0000 80 chrX:7327120-7327200 1.0000 80 chrIV:17118749-17118829 1.0000 80 chrIII:9240124-9240204 1.0000 80 chrIII:95032-95112 1.0000 80 chrV:19620246-19620326 1.0000 80 chrI:12966487-12966567 1.0000 80 chrI:3514462-3514542 1.0000 80 chrX:2939302-2939382 1.0000 80 chrIV:4208253-4208333 1.0000 80 chrX:1599427-1599507 1.0000 80 chrIII:952394-952474 1.0000 80 chrI:3956653-3956733 1.0000 80 chrX:5507968-5508048 1.0000 80 chrX:381174-381254 1.0000 80 chrI:12676266-12676346 1.0000 80 chrIV:1286539-1286619 1.0000 80 chrV:18689850-18689930 1.0000 80 chrX:15100743-15100823 1.0000 80 chrX:15600645-15600725 1.0000 80 chrIII:2314220-2314300 1.0000 80 chrV:9209062-9209142 1.0000 80 chrI:1295542-1295622 1.0000 80 chrII:12279353-12279433 1.0000 80 chrII:3054730-3054810 1.0000 80 chrX:12449480-12449560 1.0000 80 chrIV:5103465-5103545 1.0000 80 chrX:4933125-4933205 1.0000 80 chrX:16704223-16704303 1.0000 80 chrV:14364682-14364762 1.0000 80 chrIII:7166849-7166929 1.0000 80 chrV:11075781-11075861 1.0000 80 chrV:17981915-17981995 1.0000 80 chrI:7840283-7840363 1.0000 80 chrII:5042489-5042569 1.0000 80 chrIV:12282457-12282537 1.0000 80 chrIV:16024305-16024385 1.0000 80 chrV:14006975-14007055 1.0000 80 chrIII:12870433-12870513 1.0000 80 chrV:19391418-19391498 1.0000 80 chrII:15258832-15258912 1.0000 80 chrII:12693128-12693208 1.0000 80 chrII:626082-626162 1.0000 80 chrII:8786094-8786174 1.0000 80 chrIV:1838713-1838793 1.0000 80 chrI:8839241-8839321 1.0000 80 chrI:9110944-9111024 1.0000 80 chrIII:2130190-2130270 1.0000 80 chrIII:12369595-12369675 1.0000 80 chrI:8582732-8582812 1.0000 80 chrIII:10628492-10628572 1.0000 80 chrIII:11971597-11971677 1.0000 80 chrII:10863076-10863156 1.0000 80 chrIII:13377368-13377448 1.0000 80 chrI:5344389-5344469 1.0000 80 chrIV:81648-81728 1.0000 80 chrIII:2881251-2881331 1.0000 80 chrIV:15574061-15574141 1.0000 80 chrIII:5906240-5906320 1.0000 80 chrIII:220524-220604 1.0000 80 chrV:18868744-18868824 1.0000 80 chrI:2421805-2421885 1.0000 80 chrI:8702447-8702527 1.0000 80 chrX:15566840-15566920 1.0000 80 chrIII:3152612-3152692 1.0000 80 chrI:8101592-8101672 1.0000 80 chrII:347933-348013 1.0000 80 chrX:4504265-4504345 1.0000 80 chrV:9191512-9191592 1.0000 80 chrV:10441737-10441817 1.0000 80 chrI:1598584-1598664 1.0000 80 chrX:8017438-8017518 1.0000 80 chrV:6095995-6096075 1.0000 80 chrX:15630885-15630965 1.0000 80 chrX:13754622-13754702 1.0000 80 chrI:2603758-2603838 1.0000 80 chrII:4726211-4726291 1.0000 80 chrI:1610088-1610168 1.0000 80 chrX:13959781-13959861 1.0000 80 chrII:13187396-13187476 1.0000 80 chrII:13641451-13641531 1.0000 80 chrI:14073120-14073200 1.0000 80 chrX:16997381-16997461 1.0000 80 chrI:10757115-10757195 1.0000 80 chrIV:13313301-13313381 1.0000 80 chrI:10866694-10866774 1.0000 80 chrIII:11334470-11334550 1.0000 80 chrIV:14261008-14261088 1.0000 80 chrIV:9647970-9648050 1.0000 80 chrV:13625731-13625811 1.0000 80 chrII:2962689-2962769 1.0000 80 chrV:7224171-7224251 1.0000 80 chrIV:15259704-15259784 1.0000 80 chrII:14810776-14810856 1.0000 80 chrII:11621742-11621822 1.0000 80 chrIII:4612728-4612808 1.0000 80 chrIII:13697965-13698045 1.0000 80 chrX:1529190-1529270 1.0000 80 chrIV:664194-664274 1.0000 80 chrIII:11347758-11347838 1.0000 80 chrI:5866056-5866136 1.0000 80 chrI:9862709-9862789 1.0000 80 chrX:2131787-2131867 1.0000 80 chrIV:13877816-13877896 1.0000 80 chrIII:10399091-10399171 1.0000 80 chrX:11948275-11948355 1.0000 80 chrII:10529533-10529613 1.0000 80 chrII:7879458-7879538 1.0000 80 chrI:973161-973241 1.0000 80 chrIV:3521196-3521276 1.0000 80 chrII:6601187-6601267 1.0000 80 chrIII:3396230-3396310 1.0000 80 chrIII:13687332-13687412 1.0000 80 chrIII:3899068-3899148 1.0000 80 chrX:17369739-17369819 1.0000 80 chrIII:1053212-1053292 1.0000 80 chrII:4571250-4571330 1.0000 80 chrIV:14833657-14833737 1.0000 80 chrII:13725898-13725978 1.0000 80 chrV:6427536-6427616 1.0000 80 chrIII:12528129-12528209 1.0000 80 chrV:122910-122990 1.0000 80 chrII:10527784-10527864 1.0000 80 chrIV:3633323-3633403 1.0000 80 chrI:7515949-7516029 1.0000 80 chrI:5294574-5294654 1.0000 80 chrII:12603840-12603920 1.0000 80 chrII:6197047-6197127 1.0000 80 chrIII:11981674-11981754 1.0000 80 chrI:5540810-5540890 1.0000 80 chrX:5140415-5140495 1.0000 80 chrX:2939559-2939639 1.0000 80 chrI:3334603-3334683 1.0000 80 chrIII:1496036-1496116 1.0000 80 chrX:2770012-2770092 1.0000 80 chrIV:13370495-13370575 1.0000 80 chrIII:9776449-9776529 1.0000 80 chrII:8769535-8769615 1.0000 80 chrX:15431143-15431223 1.0000 80 chrIV:8040807-8040887 1.0000 80 chrIII:12472616-12472696 1.0000 80 chrV:12037476-12037556 1.0000 80 chrV:20380503-20380583 1.0000 80 chrV:9422924-9423004 1.0000 80 chrI:4906783-4906863 1.0000 80 chrIII:13002299-13002379 1.0000 80 chrX:2140804-2140884 1.0000 80 chrX:2488859-2488939 1.0000 80 chrIV:17210896-17210976 1.0000 80 chrI:1296667-1296747 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_hmg-11/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/hmg-11.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.258 C 0.238 G 0.244 T 0.26 Background letter frequencies (from file dataset with add-one prior applied): A 0.258 C 0.238 G 0.244 T 0.26 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGAVRMA MEME-1 width = 8 sites = 95 llr = 690 E-value = 4.3e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAVRMA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2a:a4338 pos.-specific C ::::4:5: probability G 8:a:2722 matrix T :::::::: bits 2.1 1.9 *** 1.7 *** 1.4 *** Relative 1.2 **** * Entropy 1.0 **** * * (10.5 bits) 0.8 **** * * 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGACGCA consensus AAA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAVRMA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:1296667-1296747 31 1.41e-05 TGAAATCTGA GAGACGCA GAGATAAACG chrI:3334603-3334683 41 1.41e-05 CAGTTGGGTG GAGACGCA GACACTCACA chrIII:1053212-1053292 69 1.41e-05 AGAGGGGGCA GAGACGCA GACG chrI:973161-973241 12 1.41e-05 GAGAGAAACG GAGACGCA GGCGGTGAGC chrX:1529190-1529270 28 1.41e-05 GCCGCGTGAA GAGACGCA GACGGTGTGA chrIII:13697965-13698045 61 1.41e-05 AGTAACGAAA GAGACGCA GAGTAAAAGA chrIII:4612728-4612808 21 1.41e-05 CAAACAAAAA GAGACGCA GAATGTGTGA chrIV:9647970-9648050 59 1.41e-05 CGGAATGTCA GAGACGCA GATAGATTGC chrIII:10628492-10628572 59 1.41e-05 GCGAGGGGAA GAGACGCA GACACGGGAA chrII:626082-626162 37 1.41e-05 GGGGACGGGA GAGACGCA GACAATAAAG chrIV:16024305-16024385 37 1.41e-05 AAGAGAGTGT GAGACGCA GAGTGGAGAG chrII:3054730-3054810 59 1.41e-05 GCCGAACAAG GAGACGCA GACGGTTGAA chrV:9209062-9209142 2 1.41e-05 G GAGACGCA GAGAATCAGG chrX:1965029-1965109 28 1.41e-05 TTGCAATTGA GAGACGCA GACGGAAAAC chrIII:1430201-1430281 24 1.41e-05 CAGAGTGGAG GAGACGCA GACAGTGTAA chrIV:7400921-7401001 64 1.41e-05 GAGAGGCATC GAGACGCA GGTGCTAAA chrI:4557218-4557298 73 1.41e-05 CGAACATAGG GAGACGCA chrX:5764910-5764990 40 1.41e-05 ACGAGACGTA GAGACGCA GAGAAAAATA chrIV:15984425-15984505 16 1.41e-05 GAAATGACGA GAGACGCA GAGAAAAGGA chrIII:1591847-1591927 50 1.41e-05 gagatagaga gagaCGCA GACACTCGAA chrIV:13272615-13272695 60 1.41e-05 GTGAATAGAA GAGACGCA GAAAAATGCA chrIV:1804733-1804813 56 1.41e-05 GGGAAGACGA GAGACGCA GGCGGTACAA chrV:2826976-2827056 47 1.41e-05 GGGGAATGAG GAGACGCA GACACAAAAA chrV:19391418-19391498 47 2.95e-05 GGTTGAGGTA GAGAAGCA GAGTAATACG chrIV:8040807-8040887 32 4.48e-05 GAGAGATAGA GAGACGAA AAGATGCATT chrV:18868744-18868824 10 4.48e-05 AAGGAAAAG GAGACGAA AAAAAACGAC chrIV:5103465-5103545 12 4.48e-05 CGGAGGTGAC GAGACGAA GAGAAGTTGG chrI:10866694-10866774 9 7.59e-05 AAAAAGAA GAGAAGAA ACACGGGAGG chrX:8017438-8017518 73 7.59e-05 gaagaagaag gagaagaa chrV:11075781-11075861 49 7.59e-05 AGAATGGCGA GAGAAGAA GAGAGGCCAG chrIV:11038863-11038943 2 7.59e-05 C GAGAAGAA GCAGCGAGGA chrIII:11201252-11201332 61 7.59e-05 CCCTGCAACG GAGAAGAA GAAAACGACG chrX:1062874-1062954 45 7.59e-05 AAAAAGCTGA GAGAGGCA GAATAGAAAA chrX:17369739-17369819 30 1.07e-04 GGATTGGGAA GAGACACA GGCAAAATGA chrII:14810776-14810856 55 1.07e-04 TGGGGTCGGA GAGAGGAA ATGACGGAAG chrI:9110944-9111024 59 1.07e-04 GATGTGGTAA GAGAGGAA AAGACGCGGC chrI:3514462-3514542 16 1.07e-04 AGAGACCACA GAGACACA GAAGGGACGA chrX:15614028-15614108 7 1.07e-04 TGTGTT GAGAGGAA AGGTGGGAAG chrIV:4781230-4781310 32 1.07e-04 CAAAATGAGA GAGACACA GGATGTGGTG chrII:4726211-4726291 51 1.23e-04 GACGCAGACA GAGAAACA CTTTACTCTT chrIII:9776449-9776529 12 1.37e-04 GCAAATCTGA GAGACGGA GAGACGGCGA chrI:9862709-9862789 30 1.37e-04 TGTGTGGCGA GAGACGGA AACTGACACA chrX:15630885-15630965 71 1.69e-04 ATATTGAGAA GAGAAGGA CG chrII:401435-401515 53 1.69e-04 GTAGTATGTA GAGAAGGA AGGAGGAGGA chrX:15431143-15431223 65 2.02e-04 TGGAGGAGTA GAGAAAAA GAGAAGTG chrII:8769535-8769615 67 2.02e-04 ATGGTGGGGT GAGAGACA TGATGA chrX:2770012-2770092 40 2.02e-04 AATGAGGGGG GAGAGACA TGGAAAAAGA chrIII:3899068-3899148 29 2.02e-04 ATCTGTGTAG GAGAAAAA AGTTGAAGAA chrIV:13313301-13313381 73 2.02e-04 AAGAAAAAAC GAGAAAAA chrII:347933-348013 37 2.02e-04 GCCGGAAAAA GAGAAAAA AGATTTTATA chrIV:81648-81728 3 2.02e-04 GA GAGAGACA GTACTGCCTG chrIII:13377368-13377448 28 2.02e-04 ATGGCGCAGA GAGAAAAA GAAAGAAGCG chrIV:833686-833766 47 2.02e-04 TAGAGAAAAA GAGAAAAA AAAGTGAAAT chrII:12163142-12163222 60 2.02e-04 AGAGACGTCA GAGAAAAA GGGGACGCGT chrX:15083957-15084037 1 2.17e-04 . GAGAGGGA GGAAAGACGC chrX:16342420-16342500 31 2.17e-04 GAAGGAAAAG GAGAGGGA GGACGCGGCT chrX:9774471-9774551 43 2.17e-04 AGACGAGAGA GAGAGGGA GGATTGGTGT chrII:11621742-11621822 68 2.62e-04 AAAGAAGAAG AAGACGCA TGAGG chrX:381174-381254 72 2.62e-04 GTGGAGAAGA GAGACGCG G chrI:13650947-13651027 45 2.62e-04 agagagtaca gagagaAA ACTGTTTTAT chrIV:14261008-14261088 16 2.92e-04 GTGACAAGGG Gagaagcg aaataagaag chrI:10237498-10237578 55 2.92e-04 AAAAGGGACG AAGAAGCA GAAAAAGGGC chrIII:10604619-10604699 2 2.92e-04 A GAGAAGCG AACTTGTGAC chrII:15258832-15258912 23 3.55e-04 CATCATCATC GAGAAAGA GCAGCAGAGC chrI:7515949-7516029 10 4.17e-04 aagacaaag aagaagaa gaagaCGTGC chrX:2131787-2131867 72 4.17e-04 CTGGAGCaag aagaagaa g chrIV:15259704-15259784 45 4.17e-04 TATTCTGTGG GAGAAGAG GAGATGCTGA chrI:7421419-7421499 69 4.17e-04 GGAGCAGAAG AAGAAGAA AGCA chrII:10863076-10863156 45 4.33e-04 GGAATAGACG GAGAGAGA GTGGAAATTC chrI:8582732-8582812 7 4.33e-04 GTCGTT GAGAGAGA GTACTTGTGA chrX:12656775-12656855 20 4.94e-04 GCGAGGCGCC GAGAGGAG CGCTTGACTC chrII:7879458-7879538 6 5.27e-04 GCCGT GAGAAACG GGATTTTTGG chrX:2939302-2939382 4 5.27e-04 TTG GAGAAACG AGGGGCAAGG chrIV:15574061-15574141 63 5.56e-04 GGTGATGACG AAGACGGA GCGACGATAG chrII:13847599-13847679 30 5.56e-04 TATTGAGATG GAGACGGG CAATGTCTCT chrX:11948275-11948355 51 6.20e-04 ACCGCAAAAA AAGAAGGA AAACAACCAA chrI:5866056-5866136 54 6.20e-04 GATAGAGTGG GAGACAAG ACGAGTGCGT chrI:12676266-12676346 62 6.20e-04 GGAAAAAGAA AAGAAGGA GTTCGTAAAT chrIII:3396230-3396310 4 6.86e-04 AAC AAGAAAAA ATCGATTTAA chrII:10529533-10529613 21 6.86e-04 GCCCAGTGGC GAGAGACG TTTTTTGTAG chrIII:11347758-11347838 28 6.86e-04 GGCGAAAAAG GAGAAAAG AAATGAAAGG chrI:14073120-14073200 42 6.86e-04 AAGGAAATAA AAGAAAAA AATCGTTACT chrIII:95032-95112 11 6.86e-04 AGTTAGATAT AAGAGACA TAGACAAATA chrII:9557573-9557653 12 6.86e-04 TAACTAGAGT GAGAGACG TAGGAATGGG chrIII:7166849-7166929 72 7.15e-04 AGAGTGGAAG AAGAGGGA G chrV:14364682-14364762 18 7.15e-04 GAAGGAACTA GAGAGGGG CGGCGCCCAC chrIII:9240124-9240204 36 7.63e-04 GAAGTGAGTT GAGAGAAG GCAGGGAGAG chrI:10875243-10875323 63 7.63e-04 AAGAGAGTGG AAGAGAAA TAGAAATTAG chrI:14181327-14181407 63 7.78e-04 AAAAACCTTG AAGAAGCG GCACTTTTTG chrIII:2716381-2716461 50 8.57e-04 ATCGGCAAAA AAGACGAG GACGACGACG chrIII:10399091-10399171 72 8.88e-04 TCAAGCAAAA AAGAAGAG C chrI:716679-716759 59 9.20e-04 CTCTGTCCAA AAGAGAGA GCATGGGAAT chrV:8215304-8215384 34 9.20e-04 AAACGGACCG AAGAGAGA CTGGCGCCTC chrIV:10062907-10062987 2 1.14e-03 A GAAAAGAA AATCGATGAG chrII:12279353-12279433 64 1.24e-03 AAAAAGTAAT GAAAAACA GCAAAATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAVRMA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:1296667-1296747 1.4e-05 30_[+1]_42 chrI:3334603-3334683 1.4e-05 40_[+1]_32 chrIII:1053212-1053292 1.4e-05 68_[+1]_4 chrI:973161-973241 1.4e-05 11_[+1]_61 chrX:1529190-1529270 1.4e-05 27_[+1]_45 chrIII:13697965-13698045 1.4e-05 60_[+1]_12 chrIII:4612728-4612808 1.4e-05 20_[+1]_52 chrIV:9647970-9648050 1.4e-05 58_[+1]_14 chrIII:10628492-10628572 1.4e-05 58_[+1]_14 chrII:626082-626162 1.4e-05 36_[+1]_36 chrIV:16024305-16024385 1.4e-05 36_[+1]_36 chrII:3054730-3054810 1.4e-05 58_[+1]_14 chrV:9209062-9209142 1.4e-05 1_[+1]_71 chrX:1965029-1965109 1.4e-05 27_[+1]_45 chrIII:1430201-1430281 1.4e-05 23_[+1]_49 chrIV:7400921-7401001 1.4e-05 63_[+1]_9 chrI:4557218-4557298 1.4e-05 72_[+1] chrX:5764910-5764990 1.4e-05 39_[+1]_33 chrIV:15984425-15984505 1.4e-05 15_[+1]_57 chrIII:1591847-1591927 1.4e-05 49_[+1]_23 chrIV:13272615-13272695 1.4e-05 59_[+1]_13 chrIV:1804733-1804813 1.4e-05 55_[+1]_17 chrV:2826976-2827056 1.4e-05 46_[+1]_26 chrV:19391418-19391498 2.9e-05 46_[+1]_26 chrIV:8040807-8040887 4.5e-05 31_[+1]_41 chrV:18868744-18868824 4.5e-05 9_[+1]_63 chrIV:5103465-5103545 4.5e-05 11_[+1]_61 chrI:10866694-10866774 7.6e-05 8_[+1]_64 chrX:8017438-8017518 7.6e-05 72_[+1] chrV:11075781-11075861 7.6e-05 48_[+1]_24 chrIV:11038863-11038943 7.6e-05 1_[+1]_71 chrIII:11201252-11201332 7.6e-05 60_[+1]_12 chrX:1062874-1062954 7.6e-05 44_[+1]_28 chrX:17369739-17369819 0.00011 29_[+1]_43 chrII:14810776-14810856 0.00011 54_[+1]_18 chrI:9110944-9111024 0.00011 58_[+1]_14 chrI:3514462-3514542 0.00011 15_[+1]_57 chrX:15614028-15614108 0.00011 6_[+1]_66 chrIV:4781230-4781310 0.00011 31_[+1]_41 chrII:4726211-4726291 0.00012 50_[+1]_22 chrIII:9776449-9776529 0.00014 11_[+1]_61 chrI:9862709-9862789 0.00014 29_[+1]_43 chrX:15630885-15630965 0.00017 70_[+1]_2 chrII:401435-401515 0.00017 52_[+1]_20 chrX:15431143-15431223 0.0002 64_[+1]_8 chrII:8769535-8769615 0.0002 66_[+1]_6 chrX:2770012-2770092 0.0002 39_[+1]_33 chrIII:3899068-3899148 0.0002 28_[+1]_44 chrIV:13313301-13313381 0.0002 72_[+1] chrII:347933-348013 0.0002 36_[+1]_36 chrIV:81648-81728 0.0002 2_[+1]_70 chrIII:13377368-13377448 0.0002 27_[+1]_45 chrIV:833686-833766 0.0002 46_[+1]_26 chrII:12163142-12163222 0.0002 59_[+1]_13 chrX:15083957-15084037 0.00022 [+1]_72 chrX:16342420-16342500 0.00022 30_[+1]_42 chrX:9774471-9774551 0.00022 42_[+1]_30 chrII:11621742-11621822 0.00026 67_[+1]_5 chrX:381174-381254 0.00026 71_[+1]_1 chrI:13650947-13651027 0.00026 44_[+1]_28 chrIV:14261008-14261088 0.00029 15_[+1]_57 chrI:10237498-10237578 0.00029 54_[+1]_18 chrIII:10604619-10604699 0.00029 1_[+1]_71 chrII:15258832-15258912 0.00036 22_[+1]_50 chrI:7515949-7516029 0.00042 9_[+1]_63 chrX:2131787-2131867 0.00042 71_[+1]_1 chrIV:15259704-15259784 0.00042 44_[+1]_28 chrI:7421419-7421499 0.00042 68_[+1]_4 chrII:10863076-10863156 0.00043 44_[+1]_28 chrI:8582732-8582812 0.00043 6_[+1]_66 chrX:12656775-12656855 0.00049 19_[+1]_53 chrII:7879458-7879538 0.00053 5_[+1]_67 chrX:2939302-2939382 0.00053 3_[+1]_69 chrIV:15574061-15574141 0.00056 62_[+1]_10 chrII:13847599-13847679 0.00056 29_[+1]_43 chrX:11948275-11948355 0.00062 50_[+1]_22 chrI:5866056-5866136 0.00062 53_[+1]_19 chrI:12676266-12676346 0.00062 61_[+1]_11 chrIII:3396230-3396310 0.00069 3_[+1]_69 chrII:10529533-10529613 0.00069 20_[+1]_52 chrIII:11347758-11347838 0.00069 27_[+1]_45 chrI:14073120-14073200 0.00069 41_[+1]_31 chrIII:95032-95112 0.00069 10_[+1]_62 chrII:9557573-9557653 0.00069 11_[+1]_61 chrIII:7166849-7166929 0.00072 71_[+1]_1 chrV:14364682-14364762 0.00072 17_[+1]_55 chrIII:9240124-9240204 0.00076 35_[+1]_37 chrI:10875243-10875323 0.00076 62_[+1]_10 chrI:14181327-14181407 0.00078 62_[+1]_10 chrIII:2716381-2716461 0.00086 49_[+1]_23 chrIII:10399091-10399171 0.00089 71_[+1]_1 chrI:716679-716759 0.00092 58_[+1]_14 chrV:8215304-8215384 0.00092 33_[+1]_39 chrIV:10062907-10062987 0.0011 1_[+1]_71 chrII:12279353-12279433 0.0012 63_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAVRMA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAVRMA width=8 seqs=95 chrI:1296667-1296747 ( 31) GAGACGCA 1 chrI:3334603-3334683 ( 41) GAGACGCA 1 chrIII:1053212-1053292 ( 69) GAGACGCA 1 chrI:973161-973241 ( 12) GAGACGCA 1 chrX:1529190-1529270 ( 28) GAGACGCA 1 chrIII:13697965-13698045 ( 61) GAGACGCA 1 chrIII:4612728-4612808 ( 21) GAGACGCA 1 chrIV:9647970-9648050 ( 59) GAGACGCA 1 chrIII:10628492-10628572 ( 59) GAGACGCA 1 chrII:626082-626162 ( 37) GAGACGCA 1 chrIV:16024305-16024385 ( 37) GAGACGCA 1 chrII:3054730-3054810 ( 59) GAGACGCA 1 chrV:9209062-9209142 ( 2) GAGACGCA 1 chrX:1965029-1965109 ( 28) GAGACGCA 1 chrIII:1430201-1430281 ( 24) GAGACGCA 1 chrIV:7400921-7401001 ( 64) GAGACGCA 1 chrI:4557218-4557298 ( 73) GAGACGCA 1 chrX:5764910-5764990 ( 40) GAGACGCA 1 chrIV:15984425-15984505 ( 16) GAGACGCA 1 chrIII:1591847-1591927 ( 50) GAGACGCA 1 chrIV:13272615-13272695 ( 60) GAGACGCA 1 chrIV:1804733-1804813 ( 56) GAGACGCA 1 chrV:2826976-2827056 ( 47) GAGACGCA 1 chrV:19391418-19391498 ( 47) GAGAAGCA 1 chrIV:8040807-8040887 ( 32) GAGACGAA 1 chrV:18868744-18868824 ( 10) GAGACGAA 1 chrIV:5103465-5103545 ( 12) GAGACGAA 1 chrI:10866694-10866774 ( 9) GAGAAGAA 1 chrX:8017438-8017518 ( 73) GAGAAGAA 1 chrV:11075781-11075861 ( 49) GAGAAGAA 1 chrIV:11038863-11038943 ( 2) GAGAAGAA 1 chrIII:11201252-11201332 ( 61) GAGAAGAA 1 chrX:1062874-1062954 ( 45) GAGAGGCA 1 chrX:17369739-17369819 ( 30) GAGACACA 1 chrII:14810776-14810856 ( 55) GAGAGGAA 1 chrI:9110944-9111024 ( 59) GAGAGGAA 1 chrI:3514462-3514542 ( 16) GAGACACA 1 chrX:15614028-15614108 ( 7) GAGAGGAA 1 chrIV:4781230-4781310 ( 32) GAGACACA 1 chrII:4726211-4726291 ( 51) GAGAAACA 1 chrIII:9776449-9776529 ( 12) GAGACGGA 1 chrI:9862709-9862789 ( 30) GAGACGGA 1 chrX:15630885-15630965 ( 71) GAGAAGGA 1 chrII:401435-401515 ( 53) GAGAAGGA 1 chrX:15431143-15431223 ( 65) GAGAAAAA 1 chrII:8769535-8769615 ( 67) GAGAGACA 1 chrX:2770012-2770092 ( 40) GAGAGACA 1 chrIII:3899068-3899148 ( 29) GAGAAAAA 1 chrIV:13313301-13313381 ( 73) GAGAAAAA 1 chrII:347933-348013 ( 37) GAGAAAAA 1 chrIV:81648-81728 ( 3) GAGAGACA 1 chrIII:13377368-13377448 ( 28) GAGAAAAA 1 chrIV:833686-833766 ( 47) GAGAAAAA 1 chrII:12163142-12163222 ( 60) GAGAAAAA 1 chrX:15083957-15084037 ( 1) GAGAGGGA 1 chrX:16342420-16342500 ( 31) GAGAGGGA 1 chrX:9774471-9774551 ( 43) GAGAGGGA 1 chrII:11621742-11621822 ( 68) AAGACGCA 1 chrX:381174-381254 ( 72) GAGACGCG 1 chrI:13650947-13651027 ( 45) GAGAGAAA 1 chrIV:14261008-14261088 ( 16) GAGAAGCG 1 chrI:10237498-10237578 ( 55) AAGAAGCA 1 chrIII:10604619-10604699 ( 2) GAGAAGCG 1 chrII:15258832-15258912 ( 23) GAGAAAGA 1 chrI:7515949-7516029 ( 10) AAGAAGAA 1 chrX:2131787-2131867 ( 72) AAGAAGAA 1 chrIV:15259704-15259784 ( 45) GAGAAGAG 1 chrI:7421419-7421499 ( 69) AAGAAGAA 1 chrII:10863076-10863156 ( 45) GAGAGAGA 1 chrI:8582732-8582812 ( 7) GAGAGAGA 1 chrX:12656775-12656855 ( 20) GAGAGGAG 1 chrII:7879458-7879538 ( 6) GAGAAACG 1 chrX:2939302-2939382 ( 4) GAGAAACG 1 chrIV:15574061-15574141 ( 63) AAGACGGA 1 chrII:13847599-13847679 ( 30) GAGACGGG 1 chrX:11948275-11948355 ( 51) AAGAAGGA 1 chrI:5866056-5866136 ( 54) GAGACAAG 1 chrI:12676266-12676346 ( 62) AAGAAGGA 1 chrIII:3396230-3396310 ( 4) AAGAAAAA 1 chrII:10529533-10529613 ( 21) GAGAGACG 1 chrIII:11347758-11347838 ( 28) GAGAAAAG 1 chrI:14073120-14073200 ( 42) AAGAAAAA 1 chrIII:95032-95112 ( 11) AAGAGACA 1 chrII:9557573-9557653 ( 12) GAGAGACG 1 chrIII:7166849-7166929 ( 72) AAGAGGGA 1 chrV:14364682-14364762 ( 18) GAGAGGGG 1 chrIII:9240124-9240204 ( 36) GAGAGAAG 1 chrI:10875243-10875323 ( 63) AAGAGAAA 1 chrI:14181327-14181407 ( 63) AAGAAGCG 1 chrIII:2716381-2716461 ( 50) AAGACGAG 1 chrIII:10399091-10399171 ( 72) AAGAAGAG 1 chrI:716679-716759 ( 59) AAGAGAGA 1 chrV:8215304-8215384 ( 34) AAGAGAGA 1 chrIV:10062907-10062987 ( 2) GAAAAGAA 1 chrII:12279353-12279433 ( 64) GAAAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAVRMA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.67311 E= 4.3e-031 -45 -1321 173 -1321 195 -1321 -1321 -1321 -361 -1321 201 -1321 195 -1321 -1321 -1321 51 71 -1 -1321 38 -1321 145 -1321 43 96 -36 -1321 167 -1321 -44 -1321 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAVRMA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 4.3e-031 0.189474 0.000000 0.810526 0.000000 1.000000 0.000000 0.000000 0.000000 0.021053 0.000000 0.978947 0.000000 1.000000 0.000000 0.000000 0.000000 0.368421 0.389474 0.242105 0.000000 0.336842 0.000000 0.663158 0.000000 0.347368 0.463158 0.189474 0.000000 0.821053 0.000000 0.178947 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAVRMA MEME-1 regular expression -------------------------------------------------------------------------------- GAGA[CAG][GA][CA]A -------------------------------------------------------------------------------- Time 5.19 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTTYBTC MEME-2 width = 8 sites = 98 llr = 700 E-value = 9.6e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTTYBTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :7:243:7 probability G :::2:3:: matrix T a3a665a3 bits 2.1 1.9 * * * 1.7 * * * 1.4 * * * Relative 1.2 *** ** Entropy 1.0 *** * ** (10.3 bits) 0.8 *** * ** 0.6 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTTTTC consensus T CCC T sequence G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTYBTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:10441737-10441817 17 1.75e-05 CGTCTGTTTC TCTTTTTC TTTTCCTTCT chrIII:220524-220604 44 1.75e-05 CCTTCCTCTG TCTTTTTC TGGGTGTCCC chrIV:4208253-4208333 57 1.75e-05 TACTCATTCT TCTTTTTC TCCTTTTCTT chrII:7615570-7615650 25 1.75e-05 TACTCTCTCG TCTTTTTC TCTGCGTATC chrI:3501237-3501317 49 1.75e-05 CAGTActctc tctttttc tctatctctc chrI:3908538-3908618 9 1.75e-05 CAAAGAGC TCTTTTTC TTCTAAAAGC chrII:15190226-15190306 46 1.75e-05 GTTTTTCCAC TCTTTTTC TCGTGTCGCA chrII:3119041-3119121 50 1.75e-05 GCCTTTTCCC TCTTTTTC TCTCGTCTCT chrI:8011498-8011578 28 1.75e-05 CTCTCACTAT TCTTTTTC TTTTCGTTTC chrX:1096999-1097079 56 1.75e-05 ACTCATCCTC TCTTTTTC TTTGTCTTTT chrI:5540810-5540890 61 3.35e-05 ACGTTTTTTT TCTTCTTC GAGTATATCC chrIII:1053212-1053292 8 3.35e-05 ACGCCAT TCTTCTTC CTCCTCGCCG chrIII:3899068-3899148 72 3.35e-05 GACGTATACT TCTTCTTC C chrIII:11334470-11334550 9 3.35e-05 CGActtct tcttcttc ttctcctCAA chrIV:13313301-13313381 47 3.35e-05 CACCAATTTT TCTTCTTC CGCCCAACAA chrII:15258832-15258912 46 3.35e-05 AGAGCAGTGG TCTTCTTC TACTTCTTAT chrIV:659717-659797 21 3.35e-05 CGCCCTtttt tcttcttc ttcttcttcc chrV:7224171-7224251 8 4.95e-05 TCTCTTT TCTTTCTC CCGCGCTGGG chrI:2603758-2603838 17 4.95e-05 TTTCGCGCAC TCTTTCTC TCTGCGTCTC chrV:9191512-9191592 18 4.95e-05 CCTTTTCATG TCTTTCTC CCCCGTATGT chrX:4504265-4504345 11 4.95e-05 ACCGCTGCAC TCTTTCTC TCTTGTTCTT chrIII:2881251-2881331 36 4.95e-05 CAAATGTTGA TCTTTCTC TGTCTGCGTC chrX:16704223-16704303 59 4.95e-05 GTTCGCACAC TCTTTCTC ATCCAGCGTC chrX:2939302-2939382 68 4.95e-05 TCTCTCGATC TCTTTCTC CGTGT chrIV:7400921-7401001 1 4.95e-05 . TCTTTCTC TGAAAGAAAA chrI:1540578-1540658 69 4.95e-05 CCCGTGTGTT TCTTTCTC CATT chrIV:15275833-15275913 23 6.60e-05 CGGGGTTTTC TCTTTGTC TCTCCGCCCT chrV:20380503-20380583 57 8.06e-05 ctctagtccc tctTCCTC ACCGTTCAGA chrV:19620246-19620326 71 9.56e-05 TTTCTGCGTC TCTTCGTC TT chrX:14744581-14744661 13 9.56e-05 TCGCTGCGTC TCTTCGTC TCCGTATGCT chrX:12449480-12449560 40 1.12e-04 CACTTTTTAT TCTCTTTC TACGGTTTGC chrV:9422924-9423004 6 1.28e-04 GTATC TCTGTTTC TCTAAATTCT chrX:13754622-13754702 33 1.28e-04 CTCCCATCCT TCTGTTTC TTCATTTTGC chrI:3332773-3332853 27 1.28e-04 tgtgtgtctc tctgtTTC GATTGCTAAT chrI:2126872-2126952 33 1.43e-04 TCCATCTGGG TCTCCTTC TAGATGCAGA chrV:12037476-12037556 30 1.96e-04 TGTCCCTCTC TCTTTTTT CATGGCATTC chrIV:664194-664274 22 1.96e-04 AACCGAGACT TTTTTTTC ATTTTTTTTC chrII:14810776-14810856 9 1.96e-04 CTTCTCAA TTTTTTTC CCGCAATTTT chrII:13187396-13187476 35 1.96e-04 CACTCTTTTT TTTTTTTC AAAACAACGA chrIV:12282457-12282537 69 1.96e-04 CCGAACTGTT TTTTTTTC AGGG chrII:5042489-5042569 24 1.96e-04 CCGTTTTCTC TCTTTTTT ATTTGGATCT chrIII:12421884-12421964 27 1.96e-04 GCATGGAGCC TCTTTTTT GTTTAGAATT chrII:4323017-4323097 69 1.96e-04 TTTCGATTTA TTTTTTTC CAGA chrIII:9776449-9776529 55 2.11e-04 ATGGCTGTGT TCTCTCTC ATCGCTATTG chrIII:2130190-2130270 15 2.11e-04 tcgcactctc tctctctc tctcGGCTCA chrI:8839241-8839321 52 2.11e-04 gcgcgcgcgc tctctctc actctctctT chrV:14006975-14007055 21 2.11e-04 tctatttctc tctctctc tcCTATTCCG chrIV:5103465-5103545 45 2.11e-04 CAAAACATTT tctctctc aattctctct chrI:3956653-3956733 11 2.11e-04 ACGCTCTAAA TCTCTCTC CTACTAACCC chrIV:6053584-6053664 45 2.11e-04 GCACTCTCTA TCTCTCTC GTGCTCTGCC chrIII:11981674-11981754 66 2.76e-04 ACTTGGCCAC TCTTCTTT CGTGTCT chrII:12693128-12693208 51 2.76e-04 TGTTCTTCTG TCTTCTTT GACGTCTGCG chrX:1599427-1599507 2 2.76e-04 C TCTTCTTT ATACTAATTC chrIII:13426136-13426216 57 2.76e-04 AAATAAATTA TTTTCTTC TTTTATTGAA chrIII:4335740-4335820 64 2.76e-04 CATTCCTATC TCTCTGTC ACTTCCAAC chrII:11916022-11916102 57 2.76e-04 TCGACCCATT TTTTCTTC TTATACACTC chrIV:17215221-17215301 62 3.05e-04 GCTCACCAGC TCTGTGTC TGCGTCTCTT chrII:4456214-4456294 18 3.05e-04 CCTACTACTC TCTGTGTC TCTTGGAAAA chrX:2488859-2488939 44 3.67e-04 TTACGCTCTA TCTGCCTC GTCCTCTCCG chrIII:13002299-13002379 51 3.67e-04 TGTCTGCTCA TCTCCGTC TCTTCAAATT chrX:5140415-5140495 45 3.67e-04 CAAATAGCCT TCTCCGTC AGGCAAGCGT chrII:12603840-12603920 39 3.67e-04 CCTCTCACTC TCTCCGTC TCCGCGGTCT chrIII:12528129-12528209 2 3.67e-04 T TCTTTCTT TGTTCCTCAA chrII:10529533-10529613 70 3.67e-04 TTTTAAACGC TTTTTCTC GCC chrX:4933125-4933205 32 3.67e-04 GAGCCCCTTC TCTGCCTC ATCTAGCGCC chrI:1295542-1295622 37 3.67e-04 TCAAAACTTT TCTCCGTC TCGTTTTCTC chrII:2962689-2962769 35 4.17e-04 CTCTAGGCCG TCTGCGTC TCCGGTGTCG chrIV:1838713-1838793 52 4.17e-04 CGTCTAACcg tctgcgtc tctcgtgcac chrI:1717547-1717627 47 4.17e-04 TGCACATGTG TCTGCGTC TCTTCACTTT chrII:13338090-13338170 61 4.17e-04 GTCGTTAGTG TCTGCGTC TTTTCGATTT chrIV:10425297-10425377 45 4.17e-04 CAAAAATGCC TCTGCGTC TCCACAGGCC chrIV:1842498-1842578 1 4.17e-04 . TCTGCGTC TCTCACACAA chrI:13351203-13351283 23 4.17e-04 GTTCCACTTG TCTGCGTC TCTTATATGG chrIII:12472616-12472696 57 4.49e-04 CTTTTCTTGC TTTTCCTC CTCCTTCCCT chrIII:2089566-2089646 52 4.49e-04 CGCCGTCAGC TTTTCCTC TATATTTTGT chrI:9471254-9471334 19 4.49e-04 ACTCTGCGTC TCTTCCTT TGTGTGTACA chrIV:3633323-3633403 69 5.17e-04 TTTCTCTGTT TTTCTTTC AAAA chrII:13641451-13641531 9 5.17e-04 tgtctatt tctctttt ccatctcCAC chrX:954811-954891 55 5.17e-04 CTCGTCCTGT TCTCTTTT CTTTATTTCC chrIII:952394-952474 63 5.53e-04 GGCAGCAATT TCTGTTTT GGCAATTGTC chrI:5294574-5294654 16 6.39e-04 AGAAATTGTG TTTTTTTT GTTCGTGTTG chrI:1598584-1598664 51 6.39e-04 GTCTTCTACT TTTTTTTT TGCTCGCTGC chrX:370061-370141 31 6.39e-04 TCTGCTACCA TCTGCTTT GTGTCTTTTC chrV:14447594-14447674 43 6.39e-04 TCACACCGAT TTTTTTTT ATTTTCGCGA chrIV:5848172-5848252 41 6.39e-04 TTTTTGGGCC TTTTTTTT GTGCATTTTT chrII:6197047-6197127 58 7.55e-04 GCTTTCCCCA TTTCTGTC TTCAGTTGCT chrI:9114033-9114113 64 7.55e-04 ATCATCGTCA TTTCTGTC CGTCACTGC chrX:9774471-9774551 22 8.18e-04 CGCTTGCATT TTTGTGTC TGCAGACGAG chrX:16997381-16997461 44 8.98e-04 ATGCATGGCA TTTGCCTC TCTCGATTTC chrX:15566840-15566920 70 8.98e-04 GCctccttcc tttttctt ttt chrIII:3152612-3152692 49 9.48e-04 CGTCTAGCCA TCTGCGTT TACATTTTTC chrX:14711296-14711376 34 9.48e-04 GTCGCTTCTC TCTGCGTT CTCTTCTTGC chrI:8702447-8702527 46 9.84e-04 TCAATTTTAA TTTTCGTT TTTCTGGACA chrII:8786094-8786174 65 9.84e-04 ATCGCCCCTC TTTTCGTT CATTTCTT chrIV:1286539-1286619 44 9.84e-04 AAAATCCGAA TTTTCGTT ATCACTGGAA chrV:13625731-13625811 47 1.00e-03 GACTAGTTCC TTTCTTTT CGAAATCGCC chrIII:5280422-5280502 1 1.04e-03 . TTTCCTTT TGTAGTGGTC chrX:7327120-7327200 8 1.15e-03 TTTACGC TTTCCCTT CATGGTCGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTYBTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:10441737-10441817 1.7e-05 16_[+2]_56 chrIII:220524-220604 1.7e-05 43_[+2]_29 chrIV:4208253-4208333 1.7e-05 56_[+2]_16 chrII:7615570-7615650 1.7e-05 24_[+2]_48 chrI:3501237-3501317 1.7e-05 48_[+2]_24 chrI:3908538-3908618 1.7e-05 8_[+2]_64 chrII:15190226-15190306 1.7e-05 45_[+2]_27 chrII:3119041-3119121 1.7e-05 49_[+2]_23 chrI:8011498-8011578 1.7e-05 27_[+2]_45 chrX:1096999-1097079 1.7e-05 55_[+2]_17 chrI:5540810-5540890 3.4e-05 60_[+2]_12 chrIII:1053212-1053292 3.4e-05 7_[+2]_65 chrIII:3899068-3899148 3.4e-05 71_[+2]_1 chrIII:11334470-11334550 3.4e-05 8_[+2]_64 chrIV:13313301-13313381 3.4e-05 46_[+2]_26 chrII:15258832-15258912 3.4e-05 45_[+2]_27 chrIV:659717-659797 3.4e-05 20_[+2]_52 chrV:7224171-7224251 5e-05 7_[+2]_65 chrI:2603758-2603838 5e-05 16_[+2]_56 chrV:9191512-9191592 5e-05 17_[+2]_55 chrX:4504265-4504345 5e-05 10_[+2]_62 chrIII:2881251-2881331 5e-05 35_[+2]_37 chrX:16704223-16704303 5e-05 58_[+2]_14 chrX:2939302-2939382 5e-05 67_[+2]_5 chrIV:7400921-7401001 5e-05 [+2]_72 chrI:1540578-1540658 5e-05 68_[+2]_4 chrIV:15275833-15275913 6.6e-05 22_[+2]_50 chrV:20380503-20380583 8.1e-05 56_[+2]_16 chrV:19620246-19620326 9.6e-05 70_[+2]_2 chrX:14744581-14744661 9.6e-05 12_[+2]_60 chrX:12449480-12449560 0.00011 39_[+2]_33 chrV:9422924-9423004 0.00013 5_[+2]_67 chrX:13754622-13754702 0.00013 32_[+2]_40 chrI:3332773-3332853 0.00013 26_[+2]_46 chrI:2126872-2126952 0.00014 32_[+2]_40 chrV:12037476-12037556 0.0002 29_[+2]_43 chrIV:664194-664274 0.0002 21_[+2]_51 chrII:14810776-14810856 0.0002 8_[+2]_64 chrII:13187396-13187476 0.0002 34_[+2]_38 chrIV:12282457-12282537 0.0002 68_[+2]_4 chrII:5042489-5042569 0.0002 23_[+2]_49 chrIII:12421884-12421964 0.0002 26_[+2]_46 chrII:4323017-4323097 0.0002 68_[+2]_4 chrIII:9776449-9776529 0.00021 54_[+2]_18 chrIII:2130190-2130270 0.00021 14_[+2]_58 chrI:8839241-8839321 0.00021 51_[+2]_21 chrV:14006975-14007055 0.00021 20_[+2]_52 chrIV:5103465-5103545 0.00021 44_[+2]_28 chrI:3956653-3956733 0.00021 10_[+2]_62 chrIV:6053584-6053664 0.00021 44_[+2]_28 chrIII:11981674-11981754 0.00028 65_[+2]_7 chrII:12693128-12693208 0.00028 50_[+2]_22 chrX:1599427-1599507 0.00028 1_[+2]_71 chrIII:13426136-13426216 0.00028 56_[+2]_16 chrIII:4335740-4335820 0.00028 63_[+2]_9 chrII:11916022-11916102 0.00028 56_[+2]_16 chrIV:17215221-17215301 0.0003 61_[+2]_11 chrII:4456214-4456294 0.0003 17_[+2]_55 chrX:2488859-2488939 0.00037 43_[+2]_29 chrIII:13002299-13002379 0.00037 50_[+2]_22 chrX:5140415-5140495 0.00037 44_[+2]_28 chrII:12603840-12603920 0.00037 38_[+2]_34 chrIII:12528129-12528209 0.00037 1_[+2]_71 chrII:10529533-10529613 0.00037 69_[+2]_3 chrX:4933125-4933205 0.00037 31_[+2]_41 chrI:1295542-1295622 0.00037 36_[+2]_36 chrII:2962689-2962769 0.00042 34_[+2]_38 chrIV:1838713-1838793 0.00042 51_[+2]_21 chrI:1717547-1717627 0.00042 46_[+2]_26 chrII:13338090-13338170 0.00042 60_[+2]_12 chrIV:10425297-10425377 0.00042 44_[+2]_28 chrIV:1842498-1842578 0.00042 [+2]_72 chrI:13351203-13351283 0.00042 22_[+2]_50 chrIII:12472616-12472696 0.00045 56_[+2]_16 chrIII:2089566-2089646 0.00045 51_[+2]_21 chrI:9471254-9471334 0.00045 18_[+2]_54 chrIV:3633323-3633403 0.00052 68_[+2]_4 chrII:13641451-13641531 0.00052 8_[+2]_64 chrX:954811-954891 0.00052 54_[+2]_18 chrIII:952394-952474 0.00055 62_[+2]_10 chrI:5294574-5294654 0.00064 15_[+2]_57 chrI:1598584-1598664 0.00064 50_[+2]_22 chrX:370061-370141 0.00064 30_[+2]_42 chrV:14447594-14447674 0.00064 42_[+2]_30 chrIV:5848172-5848252 0.00064 40_[+2]_32 chrII:6197047-6197127 0.00076 57_[+2]_15 chrI:9114033-9114113 0.00076 63_[+2]_9 chrX:9774471-9774551 0.00082 21_[+2]_51 chrX:16997381-16997461 0.0009 43_[+2]_29 chrX:15566840-15566920 0.0009 69_[+2]_3 chrIII:3152612-3152692 0.00095 48_[+2]_24 chrX:14711296-14711376 0.00095 33_[+2]_39 chrI:8702447-8702527 0.00098 45_[+2]_27 chrII:8786094-8786174 0.00098 64_[+2]_8 chrIV:1286539-1286619 0.00098 43_[+2]_29 chrV:13625731-13625811 0.001 46_[+2]_26 chrIII:5280422-5280502 0.001 [+2]_72 chrX:7327120-7327200 0.0011 7_[+2]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTYBTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTTYBTC width=8 seqs=98 chrV:10441737-10441817 ( 17) TCTTTTTC 1 chrIII:220524-220604 ( 44) TCTTTTTC 1 chrIV:4208253-4208333 ( 57) TCTTTTTC 1 chrII:7615570-7615650 ( 25) TCTTTTTC 1 chrI:3501237-3501317 ( 49) TCTTTTTC 1 chrI:3908538-3908618 ( 9) TCTTTTTC 1 chrII:15190226-15190306 ( 46) TCTTTTTC 1 chrII:3119041-3119121 ( 50) TCTTTTTC 1 chrI:8011498-8011578 ( 28) TCTTTTTC 1 chrX:1096999-1097079 ( 56) TCTTTTTC 1 chrI:5540810-5540890 ( 61) TCTTCTTC 1 chrIII:1053212-1053292 ( 8) TCTTCTTC 1 chrIII:3899068-3899148 ( 72) TCTTCTTC 1 chrIII:11334470-11334550 ( 9) TCTTCTTC 1 chrIV:13313301-13313381 ( 47) TCTTCTTC 1 chrII:15258832-15258912 ( 46) TCTTCTTC 1 chrIV:659717-659797 ( 21) TCTTCTTC 1 chrV:7224171-7224251 ( 8) TCTTTCTC 1 chrI:2603758-2603838 ( 17) TCTTTCTC 1 chrV:9191512-9191592 ( 18) TCTTTCTC 1 chrX:4504265-4504345 ( 11) TCTTTCTC 1 chrIII:2881251-2881331 ( 36) TCTTTCTC 1 chrX:16704223-16704303 ( 59) TCTTTCTC 1 chrX:2939302-2939382 ( 68) TCTTTCTC 1 chrIV:7400921-7401001 ( 1) TCTTTCTC 1 chrI:1540578-1540658 ( 69) TCTTTCTC 1 chrIV:15275833-15275913 ( 23) TCTTTGTC 1 chrV:20380503-20380583 ( 57) TCTTCCTC 1 chrV:19620246-19620326 ( 71) TCTTCGTC 1 chrX:14744581-14744661 ( 13) TCTTCGTC 1 chrX:12449480-12449560 ( 40) TCTCTTTC 1 chrV:9422924-9423004 ( 6) TCTGTTTC 1 chrX:13754622-13754702 ( 33) TCTGTTTC 1 chrI:3332773-3332853 ( 27) TCTGTTTC 1 chrI:2126872-2126952 ( 33) TCTCCTTC 1 chrV:12037476-12037556 ( 30) TCTTTTTT 1 chrIV:664194-664274 ( 22) TTTTTTTC 1 chrII:14810776-14810856 ( 9) TTTTTTTC 1 chrII:13187396-13187476 ( 35) TTTTTTTC 1 chrIV:12282457-12282537 ( 69) TTTTTTTC 1 chrII:5042489-5042569 ( 24) TCTTTTTT 1 chrIII:12421884-12421964 ( 27) TCTTTTTT 1 chrII:4323017-4323097 ( 69) TTTTTTTC 1 chrIII:9776449-9776529 ( 55) TCTCTCTC 1 chrIII:2130190-2130270 ( 15) TCTCTCTC 1 chrI:8839241-8839321 ( 52) TCTCTCTC 1 chrV:14006975-14007055 ( 21) TCTCTCTC 1 chrIV:5103465-5103545 ( 45) TCTCTCTC 1 chrI:3956653-3956733 ( 11) TCTCTCTC 1 chrIV:6053584-6053664 ( 45) TCTCTCTC 1 chrIII:11981674-11981754 ( 66) TCTTCTTT 1 chrII:12693128-12693208 ( 51) TCTTCTTT 1 chrX:1599427-1599507 ( 2) TCTTCTTT 1 chrIII:13426136-13426216 ( 57) TTTTCTTC 1 chrIII:4335740-4335820 ( 64) TCTCTGTC 1 chrII:11916022-11916102 ( 57) TTTTCTTC 1 chrIV:17215221-17215301 ( 62) TCTGTGTC 1 chrII:4456214-4456294 ( 18) TCTGTGTC 1 chrX:2488859-2488939 ( 44) TCTGCCTC 1 chrIII:13002299-13002379 ( 51) TCTCCGTC 1 chrX:5140415-5140495 ( 45) TCTCCGTC 1 chrII:12603840-12603920 ( 39) TCTCCGTC 1 chrIII:12528129-12528209 ( 2) TCTTTCTT 1 chrII:10529533-10529613 ( 70) TTTTTCTC 1 chrX:4933125-4933205 ( 32) TCTGCCTC 1 chrI:1295542-1295622 ( 37) TCTCCGTC 1 chrII:2962689-2962769 ( 35) TCTGCGTC 1 chrIV:1838713-1838793 ( 52) TCTGCGTC 1 chrI:1717547-1717627 ( 47) TCTGCGTC 1 chrII:13338090-13338170 ( 61) TCTGCGTC 1 chrIV:10425297-10425377 ( 45) TCTGCGTC 1 chrIV:1842498-1842578 ( 1) TCTGCGTC 1 chrI:13351203-13351283 ( 23) TCTGCGTC 1 chrIII:12472616-12472696 ( 57) TTTTCCTC 1 chrIII:2089566-2089646 ( 52) TTTTCCTC 1 chrI:9471254-9471334 ( 19) TCTTCCTT 1 chrIV:3633323-3633403 ( 69) TTTCTTTC 1 chrII:13641451-13641531 ( 9) TCTCTTTT 1 chrX:954811-954891 ( 55) TCTCTTTT 1 chrIII:952394-952474 ( 63) TCTGTTTT 1 chrI:5294574-5294654 ( 16) TTTTTTTT 1 chrI:1598584-1598664 ( 51) TTTTTTTT 1 chrX:370061-370141 ( 31) TCTGCTTT 1 chrV:14447594-14447674 ( 43) TTTTTTTT 1 chrIV:5848172-5848252 ( 41) TTTTTTTT 1 chrII:6197047-6197127 ( 58) TTTCTGTC 1 chrI:9114033-9114113 ( 64) TTTCTGTC 1 chrX:9774471-9774551 ( 22) TTTGTGTC 1 chrX:16997381-16997461 ( 44) TTTGCCTC 1 chrX:15566840-15566920 ( 70) TTTTTCTT 1 chrIII:3152612-3152692 ( 49) TCTGCGTT 1 chrX:14711296-14711376 ( 34) TCTGCGTT 1 chrI:8702447-8702527 ( 46) TTTTCGTT 1 chrII:8786094-8786174 ( 65) TTTTCGTT 1 chrIV:1286539-1286619 ( 44) TTTTCGTT 1 chrV:13625731-13625811 ( 47) TTTCTTTT 1 chrIII:5280422-5280502 ( 1) TTTCCTTT 1 chrX:7327120-7327200 ( 8) TTTCCCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTYBTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.64284 E= 9.6e-029 -1326 -1326 -1326 194 -1326 163 -1326 3 -1326 -1326 -1326 194 -1326 -8 -26 113 -1326 81 -1326 116 -1326 21 7 85 -1326 -1326 -1326 194 -1326 165 -1326 -3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTYBTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 98 E= 9.6e-029 0.000000 0.000000 0.000000 1.000000 0.000000 0.734694 0.000000 0.265306 0.000000 0.000000 0.000000 1.000000 0.000000 0.224490 0.204082 0.571429 0.000000 0.418367 0.000000 0.581633 0.000000 0.275510 0.255102 0.469388 0.000000 0.000000 0.000000 1.000000 0.000000 0.744898 0.000000 0.255102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTYBTC MEME-2 regular expression -------------------------------------------------------------------------------- T[CT]T[TCG][TC][TCG]T[CT] -------------------------------------------------------------------------------- Time 8.91 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCTCRY MEME-3 width = 8 sites = 49 llr = 389 E-value = 3.9e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCTCRY MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::42 pos.-specific C 2a:a:824 probability G ::::::4: matrix T 8:a:a2:4 bits 2.1 * 1.9 **** 1.7 **** 1.4 ***** Relative 1.2 ****** Entropy 1.0 ****** (11.4 bits) 0.8 ****** 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCAT consensus C GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCRY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:20380503-20380583 20 3.04e-05 tctctcgctc tctctcat ttctctgttt chrI:5540810-5540890 10 3.04e-05 cttcctctc tctctcAT TTTCTACAAC chrV:9191512-9191592 67 3.04e-05 TTTCTCTTTG TCTCTCAT TCTTAC chrIII:3152612-3152692 69 3.04e-05 CATTTTTCTA TCTCTCAT CCCA chrIII:220524-220604 66 3.04e-05 TGTCCCTGCG TCTCTCAC GGCTGTT chrI:8839241-8839321 8 3.04e-05 tctctca tctctcac cctttctcta chrI:1295542-1295622 60 3.04e-05 TTCTCTGCAC TCTCTCAC TTTTCCCCAC chrI:3501237-3501317 61 3.04e-05 tttttctcta tctctcat tttctctcgt chrI:1717547-1717627 14 3.04e-05 ccctctcccc tctctcac tctttcGCCT chrI:9114033-9114113 37 3.04e-05 ACATTTTCAT TCTCTCAT CTCCTACTCA chrIV:1842498-1842578 25 3.04e-05 ACAACTTCAA TCTCTCAT TTCAGCGCCC chrI:13351203-13351283 49 3.04e-05 GGCGTAACGG TCTCTCAT CGCTCCGTAC chrI:8011498-8011578 17 3.04e-05 AAACCATTAA TCTCTCAC TATTCTTTTT chrIII:1496036-1496116 13 5.92e-05 ATTCTCACGC TCTCTCGC GCCGGGTCTC chrII:2962689-2962769 59 5.92e-05 GTCGTCATGC TCTCTCGT CAGGGCAATA chrI:2603758-2603838 51 5.92e-05 TATGCCACTA TCTCTCGT AGATTTCTTT chrI:9110944-9111024 40 5.92e-05 CGCTGTGTGA TCTCTCGT CGATGTGGTA chrX:1599427-1599507 52 5.92e-05 TCACCCTCCG TCTCTCGC TCAGTACTTT chrIV:3368810-3368890 73 5.92e-05 ATTCGACTGG TCTCTCGC chrIII:3127751-3127831 60 5.92e-05 AAATTGTCAC TCTCTCGT CGCTCGGTCT chrI:9471254-9471334 71 5.92e-05 TTTCCTCGCT TCTCTCGC AT chrX:13754622-13754702 69 8.73e-05 TTGTGCGAAA TCTCTCCC CCCC chrIII:2881251-2881331 52 8.73e-05 TCTGTCTGCG TCTCTCCC CCTCTCCTCT chrII:3119041-3119121 63 8.73e-05 TTTTCTCTCG TCTCTCCT GATTCTTAGC chrV:9422924-9423004 21 1.03e-04 TTCTCTAAAT TCTCTCAA GGTCGAAGAG chrII:7615570-7615650 7 1.03e-04 CTCCAT TCTCTCAA TACTCTCTCG chrX:2939302-2939382 58 1.18e-04 TGCGTTGTCT TCTCTCGA TCTCTTTCTC chrII:12603840-12603920 29 1.46e-04 CGCAAAATTT CCTCTCAC TCTCTCCGTC chrX:15100743-15100823 46 1.46e-04 CGTTGTATGA CCTCTCAC CACTGCTGCC chrI:4557218-4557298 37 1.46e-04 ctaccctcgc cctctcac tcACGTTGCA chrX:16704223-16704303 41 1.72e-04 TGCCTCGCAC CCTCTCGC GTTCGCACAC chrI:5866056-5866136 10 2.51e-04 TCAACACAG TCTCTTGT TACTTTTCTT chrII:13187396-13187476 9 2.51e-04 TTTCTGCG TCTCTTGT TTACCACACA chrIII:12369595-12369675 60 2.51e-04 GGGGGGCCAC TCTCTTGC AAACACACAC chrV:9209062-9209142 22 2.51e-04 GAATCAGGGG TCTCTCCA ATATATATTC chrIV:4208253-4208333 32 2.51e-04 CGGGGTCTGA TCTCTTGT CGCACGCTAC chrX:15083957-15084037 21 2.51e-04 AAAGACGCCT TCTCTTGC ACCAGCAAAC chrII:15190226-15190306 30 2.51e-04 CGTCTGCGTC TCTCTTGT TTTTCCACTC chrIII:2089566-2089646 22 2.51e-04 ATTTCCACAC TCTCTCCA TCTCGCGTGG chrI:2126872-2126952 63 2.51e-04 GGCGGAACGT TCTCTTGT CTCGATTTTT chrX:12449480-12449560 15 2.77e-04 CCCCATTTTT CCTCTCCC TTGCAAACAC chrI:14181327-14181407 28 2.77e-04 TGCTGCGCCT CCTCTCCC CGCCGCCAAA chrX:954811-954891 11 2.77e-04 TAGTAGTGGA CCTCTCCT CTTCACGCAT chrV:11075781-11075861 7 2.92e-04 GTGCGC CCTCTCAA TGGACAGAAA chrIII:11201252-11201332 7 2.92e-04 ACCGCC CCTCTCAA TAAAACCGAC chrIV:15275833-15275913 58 2.92e-04 TCCTATTATC CCTCTCAA AAAAAGGGCG chrI:7840283-7840363 1 3.36e-04 . TCTCTTCT GAATTATTCC chrI:5294574-5294654 32 4.73e-04 TTGTTCGTGT TGTCTCAC ACGGGACGAG chrX:4933125-4933205 72 5.03e-04 GCTCTCCGAC TGTCTCGT C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCRY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:20380503-20380583 3e-05 19_[+3]_53 chrI:5540810-5540890 3e-05 9_[+3]_63 chrV:9191512-9191592 3e-05 66_[+3]_6 chrIII:3152612-3152692 3e-05 68_[+3]_4 chrIII:220524-220604 3e-05 65_[+3]_7 chrI:8839241-8839321 3e-05 7_[+3]_65 chrI:1295542-1295622 3e-05 59_[+3]_13 chrI:3501237-3501317 3e-05 60_[+3]_12 chrI:1717547-1717627 3e-05 13_[+3]_59 chrI:9114033-9114113 3e-05 36_[+3]_36 chrIV:1842498-1842578 3e-05 24_[+3]_48 chrI:13351203-13351283 3e-05 48_[+3]_24 chrI:8011498-8011578 3e-05 16_[+3]_56 chrIII:1496036-1496116 5.9e-05 12_[+3]_60 chrII:2962689-2962769 5.9e-05 58_[+3]_14 chrI:2603758-2603838 5.9e-05 50_[+3]_22 chrI:9110944-9111024 5.9e-05 39_[+3]_33 chrX:1599427-1599507 5.9e-05 51_[+3]_21 chrIV:3368810-3368890 5.9e-05 72_[+3] chrIII:3127751-3127831 5.9e-05 59_[+3]_13 chrI:9471254-9471334 5.9e-05 70_[+3]_2 chrX:13754622-13754702 8.7e-05 68_[+3]_4 chrIII:2881251-2881331 8.7e-05 51_[+3]_21 chrII:3119041-3119121 8.7e-05 62_[+3]_10 chrV:9422924-9423004 0.0001 20_[+3]_52 chrII:7615570-7615650 0.0001 6_[+3]_66 chrX:2939302-2939382 0.00012 57_[+3]_15 chrII:12603840-12603920 0.00015 28_[+3]_44 chrX:15100743-15100823 0.00015 45_[+3]_27 chrI:4557218-4557298 0.00015 36_[+3]_36 chrX:16704223-16704303 0.00017 40_[+3]_32 chrI:5866056-5866136 0.00025 9_[+3]_63 chrII:13187396-13187476 0.00025 8_[+3]_64 chrIII:12369595-12369675 0.00025 59_[+3]_13 chrV:9209062-9209142 0.00025 21_[+3]_51 chrIV:4208253-4208333 0.00025 31_[+3]_41 chrX:15083957-15084037 0.00025 20_[+3]_52 chrII:15190226-15190306 0.00025 29_[+3]_43 chrIII:2089566-2089646 0.00025 21_[+3]_51 chrI:2126872-2126952 0.00025 62_[+3]_10 chrX:12449480-12449560 0.00028 14_[+3]_58 chrI:14181327-14181407 0.00028 27_[+3]_45 chrX:954811-954891 0.00028 10_[+3]_62 chrV:11075781-11075861 0.00029 6_[+3]_66 chrIII:11201252-11201332 0.00029 6_[+3]_66 chrIV:15275833-15275913 0.00029 57_[+3]_15 chrI:7840283-7840363 0.00034 [+3]_72 chrI:5294574-5294654 0.00047 31_[+3]_41 chrX:4933125-4933205 0.0005 71_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCRY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCTCRY width=8 seqs=49 chrV:20380503-20380583 ( 20) TCTCTCAT 1 chrI:5540810-5540890 ( 10) TCTCTCAT 1 chrV:9191512-9191592 ( 67) TCTCTCAT 1 chrIII:3152612-3152692 ( 69) TCTCTCAT 1 chrIII:220524-220604 ( 66) TCTCTCAC 1 chrI:8839241-8839321 ( 8) TCTCTCAC 1 chrI:1295542-1295622 ( 60) TCTCTCAC 1 chrI:3501237-3501317 ( 61) TCTCTCAT 1 chrI:1717547-1717627 ( 14) TCTCTCAC 1 chrI:9114033-9114113 ( 37) TCTCTCAT 1 chrIV:1842498-1842578 ( 25) TCTCTCAT 1 chrI:13351203-13351283 ( 49) TCTCTCAT 1 chrI:8011498-8011578 ( 17) TCTCTCAC 1 chrIII:1496036-1496116 ( 13) TCTCTCGC 1 chrII:2962689-2962769 ( 59) TCTCTCGT 1 chrI:2603758-2603838 ( 51) TCTCTCGT 1 chrI:9110944-9111024 ( 40) TCTCTCGT 1 chrX:1599427-1599507 ( 52) TCTCTCGC 1 chrIV:3368810-3368890 ( 73) TCTCTCGC 1 chrIII:3127751-3127831 ( 60) TCTCTCGT 1 chrI:9471254-9471334 ( 71) TCTCTCGC 1 chrX:13754622-13754702 ( 69) TCTCTCCC 1 chrIII:2881251-2881331 ( 52) TCTCTCCC 1 chrII:3119041-3119121 ( 63) TCTCTCCT 1 chrV:9422924-9423004 ( 21) TCTCTCAA 1 chrII:7615570-7615650 ( 7) TCTCTCAA 1 chrX:2939302-2939382 ( 58) TCTCTCGA 1 chrII:12603840-12603920 ( 29) CCTCTCAC 1 chrX:15100743-15100823 ( 46) CCTCTCAC 1 chrI:4557218-4557298 ( 37) CCTCTCAC 1 chrX:16704223-16704303 ( 41) CCTCTCGC 1 chrI:5866056-5866136 ( 10) TCTCTTGT 1 chrII:13187396-13187476 ( 9) TCTCTTGT 1 chrIII:12369595-12369675 ( 60) TCTCTTGC 1 chrV:9209062-9209142 ( 22) TCTCTCCA 1 chrIV:4208253-4208333 ( 32) TCTCTTGT 1 chrX:15083957-15084037 ( 21) TCTCTTGC 1 chrII:15190226-15190306 ( 30) TCTCTTGT 1 chrIII:2089566-2089646 ( 22) TCTCTCCA 1 chrI:2126872-2126952 ( 63) TCTCTTGT 1 chrX:12449480-12449560 ( 15) CCTCTCCC 1 chrI:14181327-14181407 ( 28) CCTCTCCC 1 chrX:954811-954891 ( 11) CCTCTCCT 1 chrV:11075781-11075861 ( 7) CCTCTCAA 1 chrIII:11201252-11201332 ( 7) CCTCTCAA 1 chrIV:15275833-15275913 ( 58) CCTCTCAA 1 chrI:7840283-7840363 ( 1) TCTCTTCT 1 chrI:5294574-5294654 ( 32) TGTCTCAC 1 chrX:4933125-4933205 ( 72) TGTCTCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCRY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.65557 E= 3.9e-008 -1226 -22 -1226 161 -1226 201 -258 -1226 -1226 -1226 -1226 194 -1226 207 -1226 -1226 -1226 -1226 -1226 194 -1226 181 -1226 -67 80 -37 59 -1226 -66 78 -1226 72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCRY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 3.9e-008 0.000000 0.204082 0.000000 0.795918 0.000000 0.959184 0.040816 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.836735 0.000000 0.163265 0.448980 0.183673 0.367347 0.000000 0.163265 0.408163 0.000000 0.428571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCRY MEME-3 regular expression -------------------------------------------------------------------------------- [TC]CTCTC[AG][TC] -------------------------------------------------------------------------------- Time 12.52 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGAGYR MEME-4 width = 8 sites = 52 llr = 393 E-value = 1.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGAGYR MEME-4 Description -------------------------------------------------------------------------------- Simplified A a2a2a314 pos.-specific C ::::::3: probability G :8:8:7:5 matrix T ::::::6: bits 2.1 1.9 * * * 1.7 * * * 1.4 * * * Relative 1.2 ****** Entropy 1.0 ****** (10.9 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGTG consensus A ACA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGYR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15431143-15431223 47 1.58e-05 GGGGAGGGTG AGAGAGTG TGGAGGAGTA chrIII:10628492-10628572 40 1.58e-05 GGCAGTGAGA AGAGAGTG CGCGAGGGGA chrII:626082-626162 18 1.58e-05 AAAATATGGG AGAGAGTG TGGGGACGGG chrIV:16024305-16024385 28 1.58e-05 ACGTGCGGGA AGAGAGTG TGAGACGCAG chrII:3054730-3054810 40 1.58e-05 ACGACCGGCG AGAGAGTG TGCCGAACAA chrI:5999243-5999323 50 1.58e-05 GAGATAGTAC AGAGAGTG ATGGAGAGTG chrI:10875243-10875323 54 1.58e-05 AATGAGATGA AGAGAGTG GAAGAGAAAT chrIII:1591847-1591927 30 1.58e-05 tagggaaatg agagagtg cagagataga chrI:3332773-3332853 68 1.58e-05 ATTGGGAAAT AGAGAGTG AGTGA chrIII:9240124-9240204 64 3.26e-05 CGTGTCAGGG AGAGAGTA TGAGGAAAA chrIII:1430201-1430281 4 3.26e-05 GCG AGAGAGTA CACAGAGTGG chrI:13650947-13651027 35 3.26e-05 agagagaatt agagagta cagagagaAA chrIV:1804733-1804813 37 3.26e-05 AGAGCACGTG AGAGAGTA AGGGAAGACG chrI:973161-973241 40 4.70e-05 GGAGTGGGAG AGAGAGCG CGCGAGACGG chrIII:11334470-11334550 60 4.70e-05 CGTCTTCTCG AGAGAGCG TGAGAGTTGA chrX:381174-381254 44 4.70e-05 GCCTATCGCG AGAGAGCG TGTGGAGCGT chrV:19620246-19620326 3 4.70e-05 GG AGAGAGCG CACATGACAT chrI:7421419-7421499 51 4.70e-05 AATAGGGGGT AGAGAGCG GGAGCAGAAG chrIII:8127069-8127149 68 4.70e-05 CGCTGGGACG AGAGAGCG TCAAT chrIII:10399091-10399171 43 6.24e-05 GAGCAGCGGC AGAGAGCA CCGCGTGTAT chrII:4726211-4726291 31 6.24e-05 GCAGGAGGCA AGAGAGCA TAGACGCAGA chrV:14006975-14007055 67 7.91e-05 GCCGCCGCGG AGAGAATG CGCGGA chrV:6538423-6538503 16 7.91e-05 CGAGAGCAAA AGAGAATG CCCCGGCCCC chrI:12966487-12966567 64 9.68e-05 TAAGAGACCC AGAGAATA ACAATGGGA chrX:2131787-2131867 9 1.46e-04 CAAGACAA AAAGAGTG GTGTTGGTGG chrIII:11347758-11347838 58 1.46e-04 GACAGAAAAA AAAGAGTG GATGGAAAAG chrIV:17210896-17210976 38 1.95e-04 GGCAAAAACT AGAGAACA CGTaagcata chrIII:7166849-7166929 55 1.95e-04 AAAAAAACTG AGAGAACA GAGTGGAAGA chrV:9209062-9209142 55 1.95e-04 AAACAGCCGG AGAGAACA CGGAGGGAGC chrI:3514462-3514542 59 2.45e-04 CCGCCGGAGG AGAGAGAA GGATGGTgac chrX:16342420-16342500 1 2.60e-04 . aaagagcg cgagcgGCAA chrIII:95032-95112 49 2.76e-04 TAAGTACAAC AGAAAGCA GTAGAATTTT chrIII:12421884-12421964 12 2.76e-04 GAGTGCAGGG AGAAAGCA TGGAGCCTCT chrV:1049440-1049520 64 2.93e-04 GGTCTCCTCC AAAGAGCA CAGTGTCAT chrIII:2716381-2716461 31 2.93e-04 ACGACGAAAA AAAGAGCA AATCGGCAAA chrIII:13002299-13002379 27 3.10e-04 AGTTTTGCCC AGAAAATG TTGGAATGTC chrV:19391418-19391498 24 3.10e-04 GAAATAGTGT AGAAAATG TGGAGGGTTG chrIII:3396230-3396310 26 3.63e-04 ATTTAAAATG AGAAAATA TGGCTGAAAA chrII:10863076-10863156 73 3.63e-04 GGAGAGGATT AGAGAAAG chrIV:8205467-8205547 68 3.63e-04 TTTTAAATTA AGAAAATA TCATT chrX:1062874-1062954 57 3.63e-04 GAGGCAGAAT AGAAAATA GAGGCGAAGA chrIV:9647970-9648050 41 3.99e-04 TGCAATGAAT AAAGAATA CGGAATGTCA chrIV:10062907-10062987 25 3.99e-04 ATGAGAGGAC AGAGAGTT GCTCTGCGGA chrII:2787255-2787335 23 3.99e-04 ATAAGCCCTG AGAGAGTT GCGCGTAAGA chrIII:3220423-3220503 30 4.33e-04 AGGCGTCCAA AGAAAACG AAGACGGCAG chrIV:833686-833766 38 4.33e-04 GAAGCGGAGT AGAGAAAA AGAGAAAAAA chrIV:13877816-13877896 7 4.66e-04 TGGAGC AAAAAGTG GGAGAGGCTC chrIV:7400921-7401001 20 5.00e-04 GAAAGAAAAA AGAAAGAG TCCCCGTGTC chrIII:9776449-9776529 37 5.68e-04 CGAAAGAAAA AAAGAGAG ATGGCTGTGT chrII:12279353-12279433 54 5.68e-04 ATTTATTCGA AAAAAGTA ATGAAAAACA chrX:15630885-15630965 37 6.19e-04 GAAGAAGAAA AAAGAGAA GGGAGGCATG chrX:5764910-5764990 8 7.93e-04 GGAGGGT GGAGAGTA TGCAAAAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGYR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15431143-15431223 1.6e-05 46_[+4]_26 chrIII:10628492-10628572 1.6e-05 39_[+4]_33 chrII:626082-626162 1.6e-05 17_[+4]_55 chrIV:16024305-16024385 1.6e-05 27_[+4]_45 chrII:3054730-3054810 1.6e-05 39_[+4]_33 chrI:5999243-5999323 1.6e-05 49_[+4]_23 chrI:10875243-10875323 1.6e-05 53_[+4]_19 chrIII:1591847-1591927 1.6e-05 29_[+4]_43 chrI:3332773-3332853 1.6e-05 67_[+4]_5 chrIII:9240124-9240204 3.3e-05 63_[+4]_9 chrIII:1430201-1430281 3.3e-05 3_[+4]_69 chrI:13650947-13651027 3.3e-05 34_[+4]_38 chrIV:1804733-1804813 3.3e-05 36_[+4]_36 chrI:973161-973241 4.7e-05 39_[+4]_33 chrIII:11334470-11334550 4.7e-05 59_[+4]_13 chrX:381174-381254 4.7e-05 43_[+4]_29 chrV:19620246-19620326 4.7e-05 2_[+4]_70 chrI:7421419-7421499 4.7e-05 50_[+4]_22 chrIII:8127069-8127149 4.7e-05 67_[+4]_5 chrIII:10399091-10399171 6.2e-05 42_[+4]_30 chrII:4726211-4726291 6.2e-05 30_[+4]_42 chrV:14006975-14007055 7.9e-05 66_[+4]_6 chrV:6538423-6538503 7.9e-05 15_[+4]_57 chrI:12966487-12966567 9.7e-05 63_[+4]_9 chrX:2131787-2131867 0.00015 8_[+4]_64 chrIII:11347758-11347838 0.00015 57_[+4]_15 chrIV:17210896-17210976 0.0002 37_[+4]_35 chrIII:7166849-7166929 0.0002 54_[+4]_18 chrV:9209062-9209142 0.0002 54_[+4]_18 chrI:3514462-3514542 0.00024 58_[+4]_14 chrX:16342420-16342500 0.00026 [+4]_72 chrIII:95032-95112 0.00028 48_[+4]_24 chrIII:12421884-12421964 0.00028 11_[+4]_61 chrV:1049440-1049520 0.00029 63_[+4]_9 chrIII:2716381-2716461 0.00029 30_[+4]_42 chrIII:13002299-13002379 0.00031 26_[+4]_46 chrV:19391418-19391498 0.00031 23_[+4]_49 chrIII:3396230-3396310 0.00036 25_[+4]_47 chrII:10863076-10863156 0.00036 72_[+4] chrIV:8205467-8205547 0.00036 67_[+4]_5 chrX:1062874-1062954 0.00036 56_[+4]_16 chrIV:9647970-9648050 0.0004 40_[+4]_32 chrIV:10062907-10062987 0.0004 24_[+4]_48 chrII:2787255-2787335 0.0004 22_[+4]_50 chrIII:3220423-3220503 0.00043 29_[+4]_43 chrIV:833686-833766 0.00043 37_[+4]_35 chrIV:13877816-13877896 0.00047 6_[+4]_66 chrIV:7400921-7401001 0.0005 19_[+4]_53 chrIII:9776449-9776529 0.00057 36_[+4]_36 chrII:12279353-12279433 0.00057 53_[+4]_19 chrX:15630885-15630965 0.00062 36_[+4]_36 chrX:5764910-5764990 0.00079 7_[+4]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGYR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGAGYR width=8 seqs=52 chrX:15431143-15431223 ( 47) AGAGAGTG 1 chrIII:10628492-10628572 ( 40) AGAGAGTG 1 chrII:626082-626162 ( 18) AGAGAGTG 1 chrIV:16024305-16024385 ( 28) AGAGAGTG 1 chrII:3054730-3054810 ( 40) AGAGAGTG 1 chrI:5999243-5999323 ( 50) AGAGAGTG 1 chrI:10875243-10875323 ( 54) AGAGAGTG 1 chrIII:1591847-1591927 ( 30) AGAGAGTG 1 chrI:3332773-3332853 ( 68) AGAGAGTG 1 chrIII:9240124-9240204 ( 64) AGAGAGTA 1 chrIII:1430201-1430281 ( 4) AGAGAGTA 1 chrI:13650947-13651027 ( 35) AGAGAGTA 1 chrIV:1804733-1804813 ( 37) AGAGAGTA 1 chrI:973161-973241 ( 40) AGAGAGCG 1 chrIII:11334470-11334550 ( 60) AGAGAGCG 1 chrX:381174-381254 ( 44) AGAGAGCG 1 chrV:19620246-19620326 ( 3) AGAGAGCG 1 chrI:7421419-7421499 ( 51) AGAGAGCG 1 chrIII:8127069-8127149 ( 68) AGAGAGCG 1 chrIII:10399091-10399171 ( 43) AGAGAGCA 1 chrII:4726211-4726291 ( 31) AGAGAGCA 1 chrV:14006975-14007055 ( 67) AGAGAATG 1 chrV:6538423-6538503 ( 16) AGAGAATG 1 chrI:12966487-12966567 ( 64) AGAGAATA 1 chrX:2131787-2131867 ( 9) AAAGAGTG 1 chrIII:11347758-11347838 ( 58) AAAGAGTG 1 chrIV:17210896-17210976 ( 38) AGAGAACA 1 chrIII:7166849-7166929 ( 55) AGAGAACA 1 chrV:9209062-9209142 ( 55) AGAGAACA 1 chrI:3514462-3514542 ( 59) AGAGAGAA 1 chrX:16342420-16342500 ( 1) AAAGAGCG 1 chrIII:95032-95112 ( 49) AGAAAGCA 1 chrIII:12421884-12421964 ( 12) AGAAAGCA 1 chrV:1049440-1049520 ( 64) AAAGAGCA 1 chrIII:2716381-2716461 ( 31) AAAGAGCA 1 chrIII:13002299-13002379 ( 27) AGAAAATG 1 chrV:19391418-19391498 ( 24) AGAAAATG 1 chrIII:3396230-3396310 ( 26) AGAAAATA 1 chrII:10863076-10863156 ( 73) AGAGAAAG 1 chrIV:8205467-8205547 ( 68) AGAAAATA 1 chrX:1062874-1062954 ( 57) AGAAAATA 1 chrIV:9647970-9648050 ( 41) AAAGAATA 1 chrIV:10062907-10062987 ( 25) AGAGAGTT 1 chrII:2787255-2787335 ( 23) AGAGAGTT 1 chrIII:3220423-3220503 ( 30) AGAAAACG 1 chrIV:833686-833766 ( 38) AGAGAAAA 1 chrIV:13877816-13877896 ( 7) AAAAAGTG 1 chrIV:7400921-7401001 ( 20) AGAAAGAG 1 chrIII:9776449-9776529 ( 37) AAAGAGAG 1 chrII:12279353-12279433 ( 54) AAAAAGTA 1 chrX:15630885-15630965 ( 37) AAAGAGAA 1 chrX:5764910-5764990 ( 8) GGAGAGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGYR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.61772 E= 1.7e-001 193 -1234 -366 -1234 -42 -1234 173 -1234 195 -1234 -1234 -1234 -29 -1234 169 -1234 195 -1234 -1234 -1234 16 -1234 155 -1234 -116 46 -1234 110 78 -1234 109 -276 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGYR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.7e-001 0.980769 0.000000 0.019231 0.000000 0.192308 0.000000 0.807692 0.000000 1.000000 0.000000 0.000000 0.000000 0.211538 0.000000 0.788462 0.000000 1.000000 0.000000 0.000000 0.000000 0.288462 0.000000 0.711538 0.000000 0.115385 0.326923 0.000000 0.557692 0.442308 0.000000 0.519231 0.038462 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGYR MEME-4 regular expression -------------------------------------------------------------------------------- AGA[GA]A[GA][TC][GA] -------------------------------------------------------------------------------- Time 16.04 secs. ******************************************************************************** ******************************************************************************** MOTIF RCAMACAC MEME-5 width = 8 sites = 33 llr = 273 E-value = 8.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCAMACAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 4:93a:7: pos.-specific C :a:6:a:8 probability G 6:11:::: matrix T ::::::32 bits 2.1 * * 1.9 * ** 1.7 ** ** 1.4 ** ** Relative 1.2 ** ** * Entropy 1.0 *** **** (11.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCACACAC consensus A A TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMACAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:3521196-3521276 23 1.34e-05 TTTTTGAAGT Gcacacac acacacacac chrX:15600645-15600725 6 1.34e-05 TTTGA GCACACAC ACACACGTGT chrIV:15574061-15574141 27 2.77e-05 acacacacac acacacac aaacacaTCT chrIII:12369595-12369675 70 2.77e-05 TCTCTTGCAA ACACACAC TAT chrV:19620246-19620326 25 2.77e-05 TGACATTTAC ACACACAC ATACGCCTAG chrIII:8127069-8127149 7 2.77e-05 acactc acacacac aTTGAATTCG chrV:2826976-2827056 68 2.77e-05 ACAAAAACAG ACACACAC TTTGA chrII:6197047-6197127 13 4.22e-05 TCGAAAGTCT GCAAACAC AGCGACGTCA chrV:6427536-6427616 50 4.22e-05 CGACTAGTCC GCAAACAC CGAGCCTACT chrIII:5906240-5906320 13 4.22e-05 GCCGATGTAC GCAAACAC CAACACGCGA chrIII:12870433-12870513 64 4.22e-05 CGCGTCGCCT GCAAACAC AAACAAAAT chrIV:12282457-12282537 21 4.22e-05 CGAGTGGTAC GCAAACAC CAGACTTTAC chrX:12449480-12449560 25 4.22e-05 CCTCTCCCTT GCAAACAC TTTTTATTCT chrV:18689850-18689930 39 4.22e-05 GAGGCAGTAC GCAAACAC CACACCTGAC chrIII:1243302-1243382 28 4.22e-05 TCAAAAATTT GCAAACAC CTCGTCACAC chrIV:1838713-1838793 66 5.58e-05 cgtctctcgt gcacactc tcgtctc chrV:7179003-7179083 55 5.58e-05 ATCCGTGTTT GCACACTC AGTGGAAAAC chrX:14711296-14711376 53 5.58e-05 TCTTCTTGCG GCACACTC CTTCTCCGCA chrX:15566840-15566920 23 8.59e-05 GCAGTGCGCA GCACACAT ACATAGCAGA chrIII:11201252-11201332 31 8.59e-05 CGACGGAGGC GCACACAT TTTATGGGTT chrIV:14833657-14833737 45 1.00e-04 AAAGAGGGGG ACACACTC ACTCTTTTCA chrII:13187396-13187476 22 1.00e-04 CTTGTTTACC ACACACTC TTTTTTTTTT chrII:14810776-14810856 38 1.30e-04 CCAGGGGCTC ACACACAT GGGGTCGGAG chrV:8215304-8215384 57 1.30e-04 GCCTCCACAG ACACACAT TTTATTTTGA chrX:11948275-11948355 73 1.46e-04 AACCAAGTCC GCAAACAT chrV:7224171-7224251 47 1.62e-04 GATGCTCTCG ACAAACTC TTCTCAAGCA chrIII:12472616-12472696 42 1.77e-04 CCCCCCCTCC GCACACTT TTCTTGCTTT chrV:6095995-6096075 42 1.77e-04 GATGGTGTTT GCACACTT TTCACCACAA chrI:3908538-3908618 70 2.20e-04 CGCATTGGGC GCGCACAC CGA chrIII:4335740-4335820 14 2.20e-04 CTCCATCGTT GCGCACAC CCTTTGAGTC chrI:3334603-3334683 2 2.50e-04 c acagacac agcacaGAGG chrIII:1430201-1430281 41 2.50e-04 AGACAGTGTA ACAGACAC CACTGGGCTG chrIV:659717-659797 68 3.24e-04 tccttctcct ACAAACTT TTCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMACAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:3521196-3521276 1.3e-05 22_[+5]_50 chrX:15600645-15600725 1.3e-05 5_[+5]_67 chrIV:15574061-15574141 2.8e-05 26_[+5]_46 chrIII:12369595-12369675 2.8e-05 69_[+5]_3 chrV:19620246-19620326 2.8e-05 24_[+5]_48 chrIII:8127069-8127149 2.8e-05 6_[+5]_66 chrV:2826976-2827056 2.8e-05 67_[+5]_5 chrII:6197047-6197127 4.2e-05 12_[+5]_60 chrV:6427536-6427616 4.2e-05 49_[+5]_23 chrIII:5906240-5906320 4.2e-05 12_[+5]_60 chrIII:12870433-12870513 4.2e-05 63_[+5]_9 chrIV:12282457-12282537 4.2e-05 20_[+5]_52 chrX:12449480-12449560 4.2e-05 24_[+5]_48 chrV:18689850-18689930 4.2e-05 38_[+5]_34 chrIII:1243302-1243382 4.2e-05 27_[+5]_45 chrIV:1838713-1838793 5.6e-05 65_[+5]_7 chrV:7179003-7179083 5.6e-05 54_[+5]_18 chrX:14711296-14711376 5.6e-05 52_[+5]_20 chrX:15566840-15566920 8.6e-05 22_[+5]_50 chrIII:11201252-11201332 8.6e-05 30_[+5]_42 chrIV:14833657-14833737 0.0001 44_[+5]_28 chrII:13187396-13187476 0.0001 21_[+5]_51 chrII:14810776-14810856 0.00013 37_[+5]_35 chrV:8215304-8215384 0.00013 56_[+5]_16 chrX:11948275-11948355 0.00015 72_[+5] chrV:7224171-7224251 0.00016 46_[+5]_26 chrIII:12472616-12472696 0.00018 41_[+5]_31 chrV:6095995-6096075 0.00018 41_[+5]_31 chrI:3908538-3908618 0.00022 69_[+5]_3 chrIII:4335740-4335820 0.00022 13_[+5]_59 chrI:3334603-3334683 0.00025 1_[+5]_71 chrIII:1430201-1430281 0.00025 40_[+5]_32 chrIV:659717-659797 0.00032 67_[+5]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMACAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCAMACAC width=8 seqs=33 chrIV:3521196-3521276 ( 23) GCACACAC 1 chrX:15600645-15600725 ( 6) GCACACAC 1 chrIV:15574061-15574141 ( 27) ACACACAC 1 chrIII:12369595-12369675 ( 70) ACACACAC 1 chrV:19620246-19620326 ( 25) ACACACAC 1 chrIII:8127069-8127149 ( 7) ACACACAC 1 chrV:2826976-2827056 ( 68) ACACACAC 1 chrII:6197047-6197127 ( 13) GCAAACAC 1 chrV:6427536-6427616 ( 50) GCAAACAC 1 chrIII:5906240-5906320 ( 13) GCAAACAC 1 chrIII:12870433-12870513 ( 64) GCAAACAC 1 chrIV:12282457-12282537 ( 21) GCAAACAC 1 chrX:12449480-12449560 ( 25) GCAAACAC 1 chrV:18689850-18689930 ( 39) GCAAACAC 1 chrIII:1243302-1243382 ( 28) GCAAACAC 1 chrIV:1838713-1838793 ( 66) GCACACTC 1 chrV:7179003-7179083 ( 55) GCACACTC 1 chrX:14711296-14711376 ( 53) GCACACTC 1 chrX:15566840-15566920 ( 23) GCACACAT 1 chrIII:11201252-11201332 ( 31) GCACACAT 1 chrIV:14833657-14833737 ( 45) ACACACTC 1 chrII:13187396-13187476 ( 22) ACACACTC 1 chrII:14810776-14810856 ( 38) ACACACAT 1 chrV:8215304-8215384 ( 57) ACACACAT 1 chrX:11948275-11948355 ( 73) GCAAACAT 1 chrV:7224171-7224251 ( 47) ACAAACTC 1 chrIII:12472616-12472696 ( 42) GCACACTT 1 chrV:6095995-6096075 ( 42) GCACACTT 1 chrI:3908538-3908618 ( 70) GCGCACAC 1 chrIII:4335740-4335820 ( 14) GCGCACAC 1 chrI:3334603-3334683 ( 2) ACAGACAC 1 chrIII:1430201-1430281 ( 41) ACAGACAC 1 chrIV:659717-659797 ( 68) ACAAACTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMACAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4541 E= 8.6e+000 61 -1169 131 -1169 -1169 207 -1169 -1169 186 -1169 -201 -1169 37 135 -201 -1169 195 -1169 -1169 -1169 -1169 207 -1169 -1169 149 -1169 -1169 7 -1169 167 -1169 -10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMACAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 8.6e+000 0.393939 0.000000 0.606061 0.000000 0.000000 1.000000 0.000000 0.000000 0.939394 0.000000 0.060606 0.000000 0.333333 0.606061 0.060606 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.727273 0.000000 0.000000 0.272727 0.000000 0.757576 0.000000 0.242424 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMACAC MEME-5 regular expression -------------------------------------------------------------------------------- [GA]CA[CA]AC[AT][CT] -------------------------------------------------------------------------------- Time 19.39 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:2826976-2827056 9.94e-04 46_[+1(1.41e-05)]_13_[+5(2.77e-05)]_\ 5 chrI:2126872-2126952 1.20e-02 80 chrII:12163142-12163222 9.20e-02 80 chrIV:833686-833766 1.06e-01 80 chrX:1096999-1097079 6.02e-03 55_[+2(1.75e-05)]_17 chrI:13384679-13384759 2.53e-01 80 chrII:13847599-13847679 1.36e-01 80 chrV:8215304-8215384 1.75e-02 80 chrI:8011498-8011578 9.08e-04 16_[+3(3.04e-05)]_3_[+2(1.75e-05)]_\ 45 chrI:3332773-3332853 1.26e-03 67_[+4(1.58e-05)]_5 chrII:11916022-11916102 1.91e-01 80 chrI:13351203-13351283 2.41e-02 48_[+3(3.04e-05)]_24 chrII:4323017-4323097 1.40e-01 80 chrIV:1804733-1804813 3.38e-03 36_[+4(3.26e-05)]_11_[+1(1.41e-05)]_\ 17 chrIV:13272615-13272695 2.45e-02 59_[+1(1.41e-05)]_13 chrI:9471254-9471334 4.66e-02 70_[+3(5.92e-05)]_2 chrIII:5280422-5280502 5.66e-02 80 chrX:14744581-14744661 2.07e-01 12_[+2(9.56e-05)]_60 chrV:4862857-4862937 5.66e-01 80 chrII:9557573-9557653 2.86e-01 80 chrIII:3127751-3127831 1.27e-01 59_[+3(5.92e-05)]_13 chrIV:1842498-1842578 2.45e-02 6_[+3(3.04e-05)]_10_[+3(3.04e-05)]_\ 48 chrII:401435-401515 3.65e-02 80 chrIV:13521970-13522050 4.35e-01 80 chrIII:1705487-1705567 3.54e-01 80 chrX:14711296-14711376 7.70e-03 52_[+5(5.58e-05)]_20 chrIV:6053584-6053664 9.00e-03 46_[+3(5.92e-05)]_26 chrIII:4335740-4335820 2.74e-02 80 chrIII:2089566-2089646 3.25e-02 80 chrIII:1591847-1591927 8.44e-05 11_[+4(3.26e-05)]_10_[+4(1.58e-05)]_\ 12_[+1(1.41e-05)]_23 chrIII:10604619-10604699 3.21e-02 80 chrII:3119041-3119121 2.11e-03 49_[+2(1.75e-05)]_5_[+3(8.73e-05)]_\ 10 chrX:1062874-1062954 2.20e-02 44_[+1(7.59e-05)]_28 chrV:6797107-6797187 8.62e-01 80 chrIII:2716381-2716461 1.68e-01 80 chrIV:264550-264630 5.04e-01 80 chrIV:5667351-5667431 4.46e-01 80 chrIV:4781230-4781310 1.26e-01 80 chrIV:15984425-15984505 1.46e-02 15_[+1(1.41e-05)]_57 chrII:4456214-4456294 6.75e-02 80 chrIV:8986901-8986981 4.16e-01 80 chrI:1540578-1540658 5.12e-02 68_[+2(4.95e-05)]_4 chrIII:12421884-12421964 2.23e-02 80 chrIV:10425297-10425377 8.01e-02 80 chrIV:17215221-17215301 2.26e-02 80 chrI:9114033-9114113 2.61e-02 36_[+3(3.04e-05)]_36 chrX:5764910-5764990 2.16e-02 39_[+1(1.41e-05)]_33 chrII:2787255-2787335 1.91e-01 80 chrII:15190226-15190306 4.37e-03 45_[+2(1.75e-05)]_27 chrIII:4562247-4562327 2.68e-01 80 chrIV:12365088-12365168 5.33e-01 80 chrV:1049440-1049520 3.46e-02 80 chrIII:3220423-3220503 9.84e-02 80 chrIV:15275833-15275913 1.53e-03 22_[+2(6.60e-05)]_50 chrIV:659717-659797 9.10e-03 20_[+2(3.35e-05)]_1_[+2(3.35e-05)]_\ 43 chrI:10875243-10875323 2.58e-02 34_[+4(1.58e-05)]_11_[+4(1.58e-05)]_\ 19 chrV:14368380-14368460 3.55e-01 80 chrV:7179003-7179083 5.76e-02 54_[+5(5.58e-05)]_18 chrI:3412489-3412569 9.33e-01 80 chrIII:8127069-8127149 9.49e-04 6_[+5(2.77e-05)]_53_[+4(4.70e-05)]_\ 5 chrIV:10062907-10062987 1.09e-01 80 chrX:12656775-12656855 2.50e-01 80 chrI:3059146-3059226 6.88e-01 80 chrI:7421419-7421499 2.03e-02 50_[+4(4.70e-05)]_22 chrIII:11380664-11380744 3.79e-01 80 chrX:9774471-9774551 4.82e-03 80 chrIV:5848172-5848252 2.19e-01 80 chrX:16342420-16342500 8.72e-02 80 chrIV:8205467-8205547 2.47e-01 80 chrI:5999243-5999323 4.37e-03 49_[+4(1.58e-05)]_23 chrIV:17331205-17331285 7.27e-01 80 chrX:954811-954891 1.03e-01 80 chrI:13650947-13651027 5.93e-03 34_[+4(3.26e-05)]_38 chrIII:11208553-11208633 2.00e-01 80 chrII:13338090-13338170 1.07e-01 80 chrI:1717547-1717627 2.86e-02 13_[+3(3.04e-05)]_59 chrI:3908538-3908618 9.12e-04 8_[+2(1.75e-05)]_64 chrIII:11201252-11201332 4.55e-05 30_[+5(8.59e-05)]_22_[+1(7.59e-05)]_\ 12 chrI:10237498-10237578 2.43e-02 80 chrI:3501237-3501317 3.61e-03 48_[+2(1.75e-05)]_4_[+3(3.04e-05)]_\ 2_[+3(5.92e-05)]_2 chrV:14447594-14447674 4.24e-02 80 chrI:4557218-4557298 1.78e-03 72_[+1(1.41e-05)] chrIII:13426136-13426216 2.29e-01 80 chrI:5673717-5673797 3.25e-01 80 chrIV:11038863-11038943 5.42e-02 1_[+1(7.59e-05)]_71 chrIV:7400921-7401001 9.79e-05 [+2(4.95e-05)]_45_[+1(7.59e-05)]_2_\ [+1(1.41e-05)]_9 chrI:716679-716759 2.73e-03 61_[+4(6.24e-05)]_11 chrX:15441450-15441530 3.02e-01 80 chrIII:1430201-1430281 9.31e-05 3_[+4(3.26e-05)]_12_[+1(1.41e-05)]_\ 49 chrIII:1243302-1243382 1.88e-02 27_[+5(4.22e-05)]_45 chrI:3330948-3331028 1.45e-01 80 chrIV:3368810-3368890 4.07e-02 72_[+3(5.92e-05)] chrV:6538423-6538503 1.59e-01 15_[+4(7.91e-05)]_57 chrX:15083957-15084037 5.13e-03 80 chrX:1965029-1965109 7.94e-03 27_[+1(1.41e-05)]_45 chrX:2572788-2572868 9.86e-02 80 chrII:7615570-7615650 5.33e-03 24_[+2(1.75e-05)]_48 chrI:14181327-14181407 8.65e-02 80 chrIV:13384079-13384159 8.16e-01 80 chrX:15614028-15614108 1.67e-01 80 chrX:370061-370141 2.99e-01 80 chrX:7327120-7327200 1.15e-01 80 chrIV:17118749-17118829 3.01e-01 80 chrIII:9240124-9240204 4.31e-02 63_[+4(3.26e-05)]_9 chrIII:95032-95112 1.03e-01 80 chrV:19620246-19620326 3.87e-05 2_[+4(4.70e-05)]_12_[+5(2.77e-05)]_\ 40_[+2(9.56e-05)]_2 chrI:12966487-12966567 1.58e-01 63_[+4(9.68e-05)]_9 chrI:3514462-3514542 2.71e-02 80 chrX:2939302-2939382 1.75e-03 67_[+2(4.95e-05)]_5 chrIV:4208253-4208333 9.35e-03 56_[+2(1.75e-05)]_16 chrX:1599427-1599507 6.15e-03 51_[+3(5.92e-05)]_21 chrIII:952394-952474 3.45e-01 80 chrI:3956653-3956733 1.76e-03 12_[+3(8.73e-05)]_60 chrX:5507968-5508048 6.10e-01 80 chrX:381174-381254 1.18e-02 43_[+4(4.70e-05)]_29 chrI:12676266-12676346 1.93e-01 80 chrIV:1286539-1286619 1.42e-01 80 chrV:18689850-18689930 2.68e-02 38_[+5(4.22e-05)]_34 chrX:15100743-15100823 1.09e-01 80 chrX:15600645-15600725 9.45e-02 5_[+5(1.34e-05)]_67 chrIII:2314220-2314300 1.76e-01 80 chrV:9209062-9209142 3.15e-04 1_[+1(1.41e-05)]_71 chrI:1295542-1295622 8.30e-03 59_[+3(3.04e-05)]_13 chrII:12279353-12279433 7.41e-02 80 chrII:3054730-3054810 8.76e-04 39_[+4(1.58e-05)]_11_[+1(1.41e-05)]_\ 14 chrX:12449480-12449560 1.23e-03 24_[+5(4.22e-05)]_48 chrIV:5103465-5103545 1.61e-04 11_[+1(4.48e-05)]_61 chrX:4933125-4933205 1.35e-02 80 chrX:16704223-16704303 5.81e-04 58_[+2(4.95e-05)]_14 chrV:14364682-14364762 1.21e-01 80 chrIII:7166849-7166929 6.28e-02 80 chrV:11075781-11075861 3.85e-03 48_[+1(7.59e-05)]_24 chrV:17981915-17981995 5.97e-01 80 chrI:7840283-7840363 5.06e-01 80 chrII:5042489-5042569 1.28e-01 80 chrIV:12282457-12282537 9.80e-03 20_[+5(4.22e-05)]_52 chrIV:16024305-16024385 1.46e-03 27_[+4(1.58e-05)]_1_[+1(1.41e-05)]_\ 36 chrV:14006975-14007055 5.88e-04 24_[+3(8.73e-05)]_34_[+4(7.91e-05)]_\ 6 chrIII:12870433-12870513 1.14e-01 63_[+5(4.22e-05)]_9 chrV:19391418-19391498 2.93e-02 46_[+1(2.95e-05)]_26 chrII:15258832-15258912 1.32e-03 45_[+2(3.35e-05)]_27 chrII:12693128-12693208 2.02e-01 80 chrII:626082-626162 1.89e-04 17_[+4(1.58e-05)]_11_[+1(1.41e-05)]_\ 36 chrII:8786094-8786174 5.86e-01 80 chrIV:1838713-1838793 1.17e-03 57_[+3(5.92e-05)]_[+5(5.58e-05)]_7 chrI:8839241-8839321 1.21e-02 [+3(3.04e-05)]_45_[+3(3.04e-05)]_19 chrI:9110944-9111024 2.12e-03 39_[+3(5.92e-05)]_33 chrIII:2130190-2130270 5.62e-02 80 chrIII:12369595-12369675 2.80e-03 69_[+5(2.77e-05)]_3 chrI:8582732-8582812 3.55e-02 9_[+4(3.26e-05)]_63 chrIII:10628492-10628572 9.56e-05 11_[+1(1.41e-05)]_20_[+4(1.58e-05)]_\ 11_[+1(1.41e-05)]_14 chrIII:11971597-11971677 7.35e-01 80 chrII:10863076-10863156 2.25e-02 47_[+4(1.58e-05)]_25 chrIII:13377368-13377448 1.05e-02 80 chrI:5344389-5344469 4.76e-01 80 chrIV:81648-81728 4.03e-02 80 chrIII:2881251-2881331 1.65e-02 35_[+2(4.95e-05)]_8_[+3(8.73e-05)]_\ 21 chrIV:15574061-15574141 1.29e-02 6_[+5(2.77e-05)]_[+5(2.77e-05)]_\ [+5(2.77e-05)]_2_[+5(7.12e-05)]_40 chrIII:5906240-5906320 1.28e-01 12_[+5(4.22e-05)]_60 chrIII:220524-220604 9.86e-04 8_[+3(8.73e-05)]_27_[+2(1.75e-05)]_\ 14_[+3(3.04e-05)]_7 chrV:18868744-18868824 6.48e-02 9_[+1(4.48e-05)]_63 chrI:2421805-2421885 4.34e-01 80 chrI:8702447-8702527 3.10e-01 80 chrX:15566840-15566920 1.58e-02 22_[+5(8.59e-05)]_50 chrIII:3152612-3152692 3.03e-02 68_[+3(3.04e-05)]_4 chrI:8101592-8101672 6.19e-01 80 chrII:347933-348013 1.56e-02 80 chrX:4504265-4504345 7.19e-03 10_[+2(4.95e-05)]_62 chrV:9191512-9191592 6.24e-03 17_[+2(4.95e-05)]_20_[+2(3.35e-05)]_\ 13_[+3(3.04e-05)]_6 chrV:10441737-10441817 3.54e-02 16_[+2(1.75e-05)]_56 chrI:1598584-1598664 1.63e-01 80 chrX:8017438-8017518 1.14e-02 60_[+1(7.59e-05)]_4_[+1(7.59e-05)] chrV:6095995-6096075 3.38e-01 80 chrX:15630885-15630965 1.28e-01 80 chrX:13754622-13754702 1.94e-02 68_[+3(8.73e-05)]_4 chrI:2603758-2603838 1.04e-03 16_[+2(4.95e-05)]_26_[+3(5.92e-05)]_\ 22 chrII:4726211-4726291 1.14e-03 30_[+4(6.24e-05)]_42 chrI:1610088-1610168 2.08e-01 80 chrX:13959781-13959861 2.37e-02 80 chrII:13187396-13187476 1.53e-03 80 chrII:13641451-13641531 4.33e-01 80 chrI:14073120-14073200 2.45e-01 80 chrX:16997381-16997461 3.41e-02 80 chrI:10757115-10757195 6.74e-01 80 chrIV:13313301-13313381 1.08e-03 46_[+2(3.35e-05)]_26 chrI:10866694-10866774 2.86e-02 8_[+1(7.59e-05)]_64 chrIII:11334470-11334550 7.21e-04 5_[+2(3.35e-05)]_46_[+4(4.70e-05)]_\ 13 chrIV:14261008-14261088 1.37e-01 80 chrIV:9647970-9648050 8.73e-03 58_[+1(1.41e-05)]_14 chrV:13625731-13625811 1.29e-01 80 chrII:2962689-2962769 4.11e-02 58_[+3(5.92e-05)]_14 chrV:7224171-7224251 6.30e-03 7_[+2(4.95e-05)]_65 chrIV:15259704-15259784 2.18e-01 80 chrII:14810776-14810856 1.44e-04 80 chrII:11621742-11621822 8.78e-02 80 chrIII:4612728-4612808 7.27e-03 [+1(4.48e-05)]_12_[+1(1.41e-05)]_52 chrIII:13697965-13698045 1.13e-02 60_[+1(1.41e-05)]_12 chrX:1529190-1529270 3.80e-03 27_[+1(1.41e-05)]_45 chrIV:664194-664274 2.30e-01 80 chrIII:11347758-11347838 1.21e-01 80 chrI:5866056-5866136 3.70e-03 80 chrI:9862709-9862789 4.05e-02 80 chrX:2131787-2131867 7.45e-02 80 chrIV:13877816-13877896 6.08e-02 80 chrIII:10399091-10399171 4.17e-03 42_[+4(6.24e-05)]_30 chrX:11948275-11948355 8.41e-03 80 chrII:10529533-10529613 4.82e-02 80 chrII:7879458-7879538 3.42e-01 80 chrI:973161-973241 3.06e-03 11_[+1(1.41e-05)]_20_[+4(4.70e-05)]_\ 33 chrIV:3521196-3521276 8.34e-02 22_[+5(1.34e-05)]_[+5(2.77e-05)]_42 chrII:6601187-6601267 7.43e-01 80 chrIII:3396230-3396310 1.04e-01 80 chrIII:13687332-13687412 9.52e-01 80 chrIII:3899068-3899148 8.93e-04 71_[+2(3.35e-05)]_1 chrX:17369739-17369819 7.82e-02 80 chrIII:1053212-1053292 4.36e-04 7_[+2(3.35e-05)]_53_[+1(1.41e-05)]_\ 4 chrII:4571250-4571330 7.97e-01 80 chrIV:14833657-14833737 2.20e-02 80 chrII:13725898-13725978 4.89e-01 80 chrV:6427536-6427616 1.20e-01 49_[+5(4.22e-05)]_23 chrIII:12528129-12528209 2.19e-01 80 chrV:122910-122990 3.01e-01 80 chrII:10527784-10527864 7.92e-01 80 chrIV:3633323-3633403 3.84e-01 80 chrI:7515949-7516029 1.13e-01 80 chrI:5294574-5294654 3.67e-02 80 chrII:12603840-12603920 1.98e-02 80 chrII:6197047-6197127 4.58e-03 12_[+5(4.22e-05)]_14_[+5(8.59e-05)]_\ 38 chrIII:11981674-11981754 3.40e-02 80 chrI:5540810-5540890 6.17e-03 9_[+3(3.04e-05)]_11_[+2(3.35e-05)]_\ 24_[+2(3.35e-05)]_12 chrX:5140415-5140495 1.79e-01 80 chrX:2939559-2939639 5.40e-01 80 chrI:3334603-3334683 4.12e-03 40_[+1(1.41e-05)]_32 chrIII:1496036-1496116 6.56e-02 12_[+3(5.92e-05)]_60 chrX:2770012-2770092 2.44e-02 80 chrIV:13370495-13370575 3.03e-01 80 chrIII:9776449-9776529 7.85e-06 56_[+3(3.04e-05)]_16 chrII:8769535-8769615 2.17e-01 80 chrX:15431143-15431223 9.57e-03 46_[+4(1.58e-05)]_26 chrIV:8040807-8040887 3.74e-02 31_[+1(4.48e-05)]_41 chrIII:12472616-12472696 2.34e-02 80 chrV:12037476-12037556 9.60e-02 80 chrV:20380503-20380583 1.00e-02 9_[+3(5.92e-05)]_2_[+3(3.04e-05)]_9_\ [+3(5.92e-05)]_12_[+2(8.06e-05)]_16 chrV:9422924-9423004 5.20e-04 80 chrI:4906783-4906863 6.55e-01 80 chrIII:13002299-13002379 1.65e-02 80 chrX:2140804-2140884 2.65e-01 80 chrX:2488859-2488939 3.34e-01 80 chrIV:17210896-17210976 7.42e-02 80 chrI:1296667-1296747 3.18e-02 30_[+1(1.41e-05)]_42 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************