******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/hmbx-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:169-249 1.0000 80 chrM:5559-5639 1.0000 80 chrM:9687-9767 1.0000 80 chrM:7607-7687 1.0000 80 chrX:5056376-5056456 1.0000 80 chrM:4002-4082 1.0000 80 chrM:5778-5858 1.0000 80 chrII:11537768-11537848 1.0000 80 chrM:9892-9972 1.0000 80 chrV:16699966-16700046 1.0000 80 chrII:2570713-2570793 1.0000 80 chrM:2781-2861 1.0000 80 chrI:933477-933557 1.0000 80 chrIV:7487752-7487832 1.0000 80 chrM:6984-7064 1.0000 80 chrIV:8334497-8334577 1.0000 80 chrM:9457-9537 1.0000 80 chrII:13986215-13986295 1.0000 80 chrIII:445666-445746 1.0000 80 chrIII:931566-931646 1.0000 80 chrM:10803-10883 1.0000 80 chrM:1053-1133 1.0000 80 chrII:51005-51085 1.0000 80 chrM:7806-7886 1.0000 80 chrII:4130272-4130352 1.0000 80 chrM:13599-13679 1.0000 80 chrIII:3500015-3500095 1.0000 80 chrI:3567625-3567705 1.0000 80 chrX:8156103-8156183 1.0000 80 chrV:15282194-15282274 1.0000 80 chrX:16944324-16944404 1.0000 80 chrIV:12605442-12605522 1.0000 80 chrIII:12598944-12599024 1.0000 80 chrI:11747036-11747116 1.0000 80 chrX:8603159-8603239 1.0000 80 chrII:416842-416922 1.0000 80 chrI:5300629-5300709 1.0000 80 chrII:272688-272768 1.0000 80 chrV:13868934-13869014 1.0000 80 chrV:19637453-19637533 1.0000 80 chrM:4685-4765 1.0000 80 chrM:1312-1392 1.0000 80 chrM:2321-2401 1.0000 80 chrX:12338034-12338114 1.0000 80 chrM:12611-12691 1.0000 80 chrII:3049-3129 1.0000 80 chrII:232174-232254 1.0000 80 chrII:4130478-4130558 1.0000 80 chrX:12890253-12890333 1.0000 80 chrIV:3176632-3176712 1.0000 80 chrM:9252-9332 1.0000 80 chrII:98144-98224 1.0000 80 chrM:12412-12492 1.0000 80 chrIII:3476364-3476444 1.0000 80 chrII:11974639-11974719 1.0000 80 chrII:7001608-7001688 1.0000 80 chrIII:6133591-6133671 1.0000 80 chrX:14115654-14115734 1.0000 80 chrIV:13549491-13549571 1.0000 80 chrX:3914440-3914520 1.0000 80 chrX:9296712-9296792 1.0000 80 chrV:16041064-16041144 1.0000 80 chrI:12229341-12229421 1.0000 80 chrII:8716587-8716667 1.0000 80 chrI:9176246-9176326 1.0000 80 chrIV:9774354-9774434 1.0000 80 chrX:9225421-9225501 1.0000 80 chrII:146880-146960 1.0000 80 chrV:19723023-19723103 1.0000 80 chrX:14804883-14804963 1.0000 80 chrX:8638987-8639067 1.0000 80 chrIII:4426843-4426923 1.0000 80 chrV:14855842-14855922 1.0000 80 chrIII:10670124-10670204 1.0000 80 chrIII:3664366-3664446 1.0000 80 chrX:8925645-8925725 1.0000 80 chrII:9295429-9295509 1.0000 80 chrX:8386164-8386244 1.0000 80 chrI:1175813-1175893 1.0000 80 chrV:1875851-1875931 1.0000 80 chrII:164708-164788 1.0000 80 chrIV:14034231-14034311 1.0000 80 chrI:1575663-1575743 1.0000 80 chrV:11933504-11933584 1.0000 80 chrIII:9051075-9051155 1.0000 80 chrX:8602861-8602941 1.0000 80 chrIV:2639775-2639855 1.0000 80 chrII:9301188-9301268 1.0000 80 chrIV:14077021-14077101 1.0000 80 chrIII:8650345-8650425 1.0000 80 chrI:11075165-11075245 1.0000 80 chrII:5293424-5293504 1.0000 80 chrIV:9048255-9048335 1.0000 80 chrI:2830169-2830249 1.0000 80 chrIII:640577-640657 1.0000 80 chrI:12741244-12741324 1.0000 80 chrI:7474880-7474960 1.0000 80 chrII:7812379-7812459 1.0000 80 chrV:126686-126766 1.0000 80 chrIII:12613628-12613708 1.0000 80 chrX:16928270-16928350 1.0000 80 chrX:16602639-16602719 1.0000 80 chrX:13145001-13145081 1.0000 80 chrI:12225454-12225534 1.0000 80 chrV:1003894-1003974 1.0000 80 chrIV:14032769-14032849 1.0000 80 chrX:3994576-3994656 1.0000 80 chrIII:10624820-10624900 1.0000 80 chrV:12780414-12780494 1.0000 80 chrII:4942475-4942555 1.0000 80 chrI:13310248-13310328 1.0000 80 chrX:12367673-12367753 1.0000 80 chrII:386073-386153 1.0000 80 chrX:4444266-4444346 1.0000 80 chrIV:2390472-2390552 1.0000 80 chrX:16551432-16551512 1.0000 80 chrIII:7642161-7642241 1.0000 80 chrIII:8653080-8653160 1.0000 80 chrII:2860382-2860462 1.0000 80 chrV:19522619-19522699 1.0000 80 chrX:4789064-4789144 1.0000 80 chrIII:7030541-7030621 1.0000 80 chrI:6136610-6136690 1.0000 80 chrM:8313-8393 1.0000 80 chrIV:3233145-3233225 1.0000 80 chrX:12510227-12510307 1.0000 80 chrII:11545723-11545803 1.0000 80 chrII:6898195-6898275 1.0000 80 chrIII:8768059-8768139 1.0000 80 chrIII:1604768-1604848 1.0000 80 chrIV:5371107-5371187 1.0000 80 chrIV:9191348-9191428 1.0000 80 chrI:2935685-2935765 1.0000 80 chrIV:2805606-2805686 1.0000 80 chrX:11643923-11644003 1.0000 80 chrI:1823223-1823303 1.0000 80 chrII:7708725-7708805 1.0000 80 chrII:14063113-14063193 1.0000 80 chrII:8547083-8547163 1.0000 80 chrV:4731556-4731636 1.0000 80 chrX:6286292-6286372 1.0000 80 chrIV:11026142-11026222 1.0000 80 chrX:8646413-8646493 1.0000 80 chrV:20694112-20694192 1.0000 80 chrII:3521481-3521561 1.0000 80 chrIV:17087540-17087620 1.0000 80 chrIII:12399833-12399913 1.0000 80 chrII:5577199-5577279 1.0000 80 chrII:14635381-14635461 1.0000 80 chrIII:4568714-4568794 1.0000 80 chrV:13176492-13176572 1.0000 80 chrX:3348074-3348154 1.0000 80 chrI:14721623-14721703 1.0000 80 chrII:14143996-14144076 1.0000 80 chrX:5707983-5708063 1.0000 80 chrI:13421193-13421273 1.0000 80 chrV:7231049-7231129 1.0000 80 chrIV:14013771-14013851 1.0000 80 chrX:16930012-16930092 1.0000 80 chrIII:9861673-9861753 1.0000 80 chrII:6248634-6248714 1.0000 80 chrX:6371350-6371430 1.0000 80 chrV:15551784-15551864 1.0000 80 chrV:19126028-19126108 1.0000 80 chrI:13470421-13470501 1.0000 80 chrV:13962151-13962231 1.0000 80 chrIV:11310672-11310752 1.0000 80 chrIV:796687-796767 1.0000 80 chrX:14490212-14490292 1.0000 80 chrIV:9477706-9477786 1.0000 80 chrII:9566197-9566277 1.0000 80 chrX:13415108-13415188 1.0000 80 chrX:9637896-9637976 1.0000 80 chrII:11547389-11547469 1.0000 80 chrII:10388145-10388225 1.0000 80 chrIV:16382314-16382394 1.0000 80 chrIII:3175148-3175228 1.0000 80 chrIII:4369563-4369643 1.0000 80 chrIV:13386183-13386263 1.0000 80 chrI:11505555-11505635 1.0000 80 chrX:11644122-11644202 1.0000 80 chrIII:9104174-9104254 1.0000 80 chrX:5319317-5319397 1.0000 80 chrX:14747140-14747220 1.0000 80 chrIII:1122405-1122485 1.0000 80 chrIII:11371405-11371485 1.0000 80 chrIV:143953-144033 1.0000 80 chrIII:6158792-6158872 1.0000 80 chrI:9267124-9267204 1.0000 80 chrII:6346633-6346713 1.0000 80 chrI:2410194-2410274 1.0000 80 chrI:9988854-9988934 1.0000 80 chrX:13511877-13511957 1.0000 80 chrV:11113339-11113419 1.0000 80 chrIII:7198997-7199077 1.0000 80 chrIV:3552165-3552245 1.0000 80 chrIII:89316-89396 1.0000 80 chrX:13121245-13121325 1.0000 80 chrX:11252628-11252708 1.0000 80 chrIV:1388202-1388282 1.0000 80 chrX:1880832-1880912 1.0000 80 chrV:6889002-6889082 1.0000 80 chrI:3873938-3874018 1.0000 80 chrII:9774836-9774916 1.0000 80 chrX:12458159-12458239 1.0000 80 chrIV:3524816-3524896 1.0000 80 chrIII:8106644-8106724 1.0000 80 chrIII:4171103-4171183 1.0000 80 chrII:10169425-10169505 1.0000 80 chrIV:11602114-11602194 1.0000 80 chrII:4238034-4238114 1.0000 80 chrII:3502761-3502841 1.0000 80 chrIII:9629969-9630049 1.0000 80 chrX:12843743-12843823 1.0000 80 chrIII:4470952-4471032 1.0000 80 chrII:5292364-5292444 1.0000 80 chrX:10132687-10132767 1.0000 80 chrI:13297603-13297683 1.0000 80 chrV:12596976-12597056 1.0000 80 chrI:1416002-1416082 1.0000 80 chrI:2514322-2514402 1.0000 80 chrX:13264654-13264734 1.0000 80 chrI:1958521-1958601 1.0000 80 chrIII:4378833-4378913 1.0000 80 chrIV:620608-620688 1.0000 80 chrIV:8253004-8253084 1.0000 80 chrIII:5602189-5602269 1.0000 80 chrV:6709215-6709295 1.0000 80 chrV:9503539-9503619 1.0000 80 chrI:13161073-13161153 1.0000 80 chrV:11239337-11239417 1.0000 80 chrII:6853172-6853252 1.0000 80 chrIV:8375530-8375610 1.0000 80 chrII:8107275-8107355 1.0000 80 chrIV:7085046-7085126 1.0000 80 chrX:10963823-10963903 1.0000 80 chrI:8530144-8530224 1.0000 80 chrX:6292301-6292381 1.0000 80 chrIII:5555084-5555164 1.0000 80 chrI:11323341-11323421 1.0000 80 chrI:14737466-14737546 1.0000 80 chrII:5390029-5390109 1.0000 80 chrIII:13269011-13269091 1.0000 80 chrX:12661222-12661302 1.0000 80 chrX:9467734-9467814 1.0000 80 chrIII:11142217-11142297 1.0000 80 chrX:15297493-15297573 1.0000 80 chrV:13003586-13003666 1.0000 80 chrX:3970148-3970228 1.0000 80 chrX:3697753-3697833 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_hmbx-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/hmbx-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.273 C 0.216 G 0.232 T 0.278 Background letter frequencies (from file dataset with add-one prior applied): A 0.273 C 0.216 G 0.232 T 0.278 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WTCGAAYC MEME-1 width = 8 sites = 51 llr = 408 E-value = 5.4e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTCGAAYC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4:::a6:: pos.-specific C ::8::17a probability G 1::a:1:: matrix T 5a2::23: bits 2.2 * * 2.0 * * 1.8 * ** * 1.5 * ** * Relative 1.3 **** * Entropy 1.1 **** ** (11.5 bits) 0.9 **** ** 0.7 **** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCGAACC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCGAAYC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13264654-13264734 43 1.35e-05 TCGAACCGGA TTCGAACC AGTGACCTAA chrII:5577199-5577279 15 1.35e-05 CCTAGCCGGG TTCGAACC GGCGATCTTC chrIV:1388202-1388282 28 2.67e-05 CATGCCGGGA ATCGAACC CGGGCCGCGT chrX:13121245-13121325 30 2.67e-05 tcgaccggga atcgaacc cgggccgccc chrIV:3552165-3552245 38 2.67e-05 CGAACCGGGA ATCGAACC CGGGACCTCT chrIV:14013771-14013851 48 2.67e-05 GGTATGGGGA ATCGAACC CCAGACTTCT chrII:3521481-3521561 20 2.67e-05 TGCGGCTGGA ATCGAACC AGCGTCGCCA chrIII:7030541-7030621 30 2.67e-05 TCATGCTGGA ATCGAACC AGCGACCTTC chrIII:7642161-7642241 11 2.67e-05 GTTGCGGGGA ATCGAACC CCGGCCTTAT chrX:16928270-16928350 15 2.67e-05 tcgaccggga atcgaacc cgggccgccc chrIII:8650345-8650425 50 2.67e-05 CGAACCGGGA ATCGAACC CGGGACCTCT chrX:10132687-10132767 44 4.40e-05 AGATTGTAGG TTCGAATC CTGCCGTGGT chrIV:3524816-3524896 56 4.40e-05 AGATTGCAGG TTCGAATC CTGCCGTGGT chrI:9267124-9267204 30 4.40e-05 GGCACCAGAC TTCGAATC TGGGGATTGC chrIII:6158792-6158872 48 4.40e-05 CCCGCGTAGG TTCGAATC CTGCTGACTG chrII:2860382-2860462 22 4.40e-05 GGGGCGTGGG TTCGAATC CCACTCTCTT chrII:98144-98224 54 4.40e-05 AATTTTCTAT TTCGAATC ATTTTTCAGT chrV:12596976-12597056 68 6.10e-05 CCACTCGGCC ATCGAATC GATCG chrII:6346633-6346713 8 6.10e-05 TGCCAGA ATCGAATC AAAAATGATT chrX:3697753-3697833 56 7.25e-05 AGGTCGTGAG TTCGAGCC TCACCGGGAG chrX:12661222-12661302 6 7.25e-05 GCCAG TTCGAGCC TGGCATGGGG chrI:13161073-13161153 41 7.25e-05 AGGTCGGTGG TTCGAGCC CGCCCGAGAT chrIII:8106644-8106724 62 7.25e-05 AGGTCGTGAG TTCGAGCC TCACCGGGAG chrI:6136610-6136690 40 7.25e-05 TTGTCGCGGG TTCGAGCC CCGCATTGGG chrV:19723023-19723103 61 7.25e-05 AGGTTGGTGG TTCGAGCC CACCCGGGAG chrV:19126028-19126108 69 8.62e-05 AGGTCACCAG TTCGATCC TGGT chrIII:8653080-8653160 28 8.62e-05 AGGTCACCAG TTCGATCC TGGTTCGGGG chrIII:11371405-11371485 19 1.28e-04 CTTCATTGGT TTTGAACC AGTGACCTTC chrX:15297493-15297573 32 1.39e-04 AGGTCGCAGG TTCGACCC CTGCTGGCGG chrIII:1122405-1122485 13 1.39e-04 CGGCAAACCA TTCGACCC GCCGCTGTTG chrII:6248634-6248714 67 1.39e-04 ACAATGTAGG TTCGACCC CCGCTT chrX:9467734-9467814 9 1.67e-04 AACCGGGG ATTGAACC CGGGACCTCT chrX:12458159-12458239 31 1.67e-04 GGTATGGGGA ATTGAACC CCAGCCCTCT chrIII:7198997-7199077 10 1.67e-04 TTTTCTCGA ATTGAACC ATTGGCCTAG chrX:13415108-13415188 26 1.67e-04 GCCAGCAGGG GTCGAACC TGCGACCTTG chrV:15551784-15551864 29 1.67e-04 Ccggccggga attgaacc cgggtctcgc chrIV:11026142-11026222 15 1.67e-04 CACCGGTGGT GTCGAACC TGGGAGTATA chrX:16602639-16602719 9 1.67e-04 GTGTGGGG GTCGAACC ATTAACCCCC chrX:3914440-3914520 46 1.67e-04 TGCAGCGGGG ATTGAACC AGAGTACGAG chrX:12890253-12890333 46 1.67e-04 GGCACGGGGA ATTGAACC CCGGACTTCT chrX:10963823-10963903 57 2.10e-04 TCGACGGGGG TTCGATTC CCCCCGAACG chrIV:11310672-11310752 54 2.10e-04 GTCTCTTTGT TTCGATTC AGACAAGCTA chrII:6898195-6898275 51 2.10e-04 GCGGCCCGGG TTCGATTC CCGGCATGGG chrX:4444266-4444346 48 2.10e-04 GCGGCCCGGG TTCGATTC CCGGCATGGG chrII:7001608-7001688 71 2.10e-04 AAGTCTGGGG TTCGATTC CC chrX:8925645-8925725 28 2.64e-04 CACTCATGAC TTTGAATC CTGCGACCCG chrII:11537768-11537848 60 2.64e-04 ATATCTTAAA ATCGATTC TAGAAACCCT chrX:6371350-6371430 53 2.78e-04 TGGTAGCGCG TTCGACTC CAGATCGAAA chrV:1003894-1003974 21 3.14e-04 GTCACGAGAA ATTGAATC GGTAGAAACT chrIII:9104174-9104254 47 3.53e-04 CCCGGGTGGG CTCGAACC ACCAACCTTT chrI:11323341-11323421 56 3.95e-04 CCGCATTGCA ATTGAGCC ACTCCGCCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCGAAYC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13264654-13264734 1.3e-05 42_[+1]_30 chrII:5577199-5577279 1.3e-05 14_[+1]_58 chrIV:1388202-1388282 2.7e-05 27_[+1]_45 chrX:13121245-13121325 2.7e-05 29_[+1]_43 chrIV:3552165-3552245 2.7e-05 37_[+1]_35 chrIV:14013771-14013851 2.7e-05 47_[+1]_25 chrII:3521481-3521561 2.7e-05 19_[+1]_53 chrIII:7030541-7030621 2.7e-05 29_[+1]_43 chrIII:7642161-7642241 2.7e-05 10_[+1]_62 chrX:16928270-16928350 2.7e-05 14_[+1]_58 chrIII:8650345-8650425 2.7e-05 49_[+1]_23 chrX:10132687-10132767 4.4e-05 43_[+1]_29 chrIV:3524816-3524896 4.4e-05 55_[+1]_17 chrI:9267124-9267204 4.4e-05 29_[+1]_43 chrIII:6158792-6158872 4.4e-05 47_[+1]_25 chrII:2860382-2860462 4.4e-05 21_[+1]_51 chrII:98144-98224 4.4e-05 53_[+1]_19 chrV:12596976-12597056 6.1e-05 67_[+1]_5 chrII:6346633-6346713 6.1e-05 7_[+1]_65 chrX:3697753-3697833 7.2e-05 55_[+1]_17 chrX:12661222-12661302 7.2e-05 5_[+1]_67 chrI:13161073-13161153 7.2e-05 40_[+1]_32 chrIII:8106644-8106724 7.2e-05 61_[+1]_11 chrI:6136610-6136690 7.2e-05 39_[+1]_33 chrV:19723023-19723103 7.2e-05 60_[+1]_12 chrV:19126028-19126108 8.6e-05 68_[+1]_4 chrIII:8653080-8653160 8.6e-05 27_[+1]_45 chrIII:11371405-11371485 0.00013 18_[+1]_54 chrX:15297493-15297573 0.00014 31_[+1]_41 chrIII:1122405-1122485 0.00014 12_[+1]_60 chrII:6248634-6248714 0.00014 66_[+1]_6 chrX:9467734-9467814 0.00017 8_[+1]_64 chrX:12458159-12458239 0.00017 30_[+1]_42 chrIII:7198997-7199077 0.00017 9_[+1]_63 chrX:13415108-13415188 0.00017 25_[+1]_47 chrV:15551784-15551864 0.00017 28_[+1]_44 chrIV:11026142-11026222 0.00017 14_[+1]_58 chrX:16602639-16602719 0.00017 8_[+1]_64 chrX:3914440-3914520 0.00017 45_[+1]_27 chrX:12890253-12890333 0.00017 45_[+1]_27 chrX:10963823-10963903 0.00021 56_[+1]_16 chrIV:11310672-11310752 0.00021 53_[+1]_19 chrII:6898195-6898275 0.00021 50_[+1]_22 chrX:4444266-4444346 0.00021 47_[+1]_25 chrII:7001608-7001688 0.00021 70_[+1]_2 chrX:8925645-8925725 0.00026 27_[+1]_45 chrII:11537768-11537848 0.00026 59_[+1]_13 chrX:6371350-6371430 0.00028 52_[+1]_20 chrV:1003894-1003974 0.00031 20_[+1]_52 chrIII:9104174-9104254 0.00035 46_[+1]_26 chrI:11323341-11323421 0.00039 55_[+1]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCGAAYC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTCGAAYC width=8 seqs=51 chrX:13264654-13264734 ( 43) TTCGAACC 1 chrII:5577199-5577279 ( 15) TTCGAACC 1 chrIV:1388202-1388282 ( 28) ATCGAACC 1 chrX:13121245-13121325 ( 30) ATCGAACC 1 chrIV:3552165-3552245 ( 38) ATCGAACC 1 chrIV:14013771-14013851 ( 48) ATCGAACC 1 chrII:3521481-3521561 ( 20) ATCGAACC 1 chrIII:7030541-7030621 ( 30) ATCGAACC 1 chrIII:7642161-7642241 ( 11) ATCGAACC 1 chrX:16928270-16928350 ( 15) ATCGAACC 1 chrIII:8650345-8650425 ( 50) ATCGAACC 1 chrX:10132687-10132767 ( 44) TTCGAATC 1 chrIV:3524816-3524896 ( 56) TTCGAATC 1 chrI:9267124-9267204 ( 30) TTCGAATC 1 chrIII:6158792-6158872 ( 48) TTCGAATC 1 chrII:2860382-2860462 ( 22) TTCGAATC 1 chrII:98144-98224 ( 54) TTCGAATC 1 chrV:12596976-12597056 ( 68) ATCGAATC 1 chrII:6346633-6346713 ( 8) ATCGAATC 1 chrX:3697753-3697833 ( 56) TTCGAGCC 1 chrX:12661222-12661302 ( 6) TTCGAGCC 1 chrI:13161073-13161153 ( 41) TTCGAGCC 1 chrIII:8106644-8106724 ( 62) TTCGAGCC 1 chrI:6136610-6136690 ( 40) TTCGAGCC 1 chrV:19723023-19723103 ( 61) TTCGAGCC 1 chrV:19126028-19126108 ( 69) TTCGATCC 1 chrIII:8653080-8653160 ( 28) TTCGATCC 1 chrIII:11371405-11371485 ( 19) TTTGAACC 1 chrX:15297493-15297573 ( 32) TTCGACCC 1 chrIII:1122405-1122485 ( 13) TTCGACCC 1 chrII:6248634-6248714 ( 67) TTCGACCC 1 chrX:9467734-9467814 ( 9) ATTGAACC 1 chrX:12458159-12458239 ( 31) ATTGAACC 1 chrIII:7198997-7199077 ( 10) ATTGAACC 1 chrX:13415108-13415188 ( 26) GTCGAACC 1 chrV:15551784-15551864 ( 29) ATTGAACC 1 chrIV:11026142-11026222 ( 15) GTCGAACC 1 chrX:16602639-16602719 ( 9) GTCGAACC 1 chrX:3914440-3914520 ( 46) ATTGAACC 1 chrX:12890253-12890333 ( 46) ATTGAACC 1 chrX:10963823-10963903 ( 57) TTCGATTC 1 chrIV:11310672-11310752 ( 54) TTCGATTC 1 chrII:6898195-6898275 ( 51) TTCGATTC 1 chrX:4444266-4444346 ( 48) TTCGATTC 1 chrII:7001608-7001688 ( 71) TTCGATTC 1 chrX:8925645-8925725 ( 28) TTTGAATC 1 chrII:11537768-11537848 ( 60) ATCGATTC 1 chrX:6371350-6371430 ( 53) TTCGACTC 1 chrV:1003894-1003974 ( 21) ATTGAATC 1 chrIII:9104174-9104254 ( 47) CTCGAACC 1 chrI:11323341-11323421 ( 56) ATTGAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCGAAYC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.99089 E= 5.4e-011 52 -346 -198 93 -1232 -1232 -1232 185 -1232 190 -1232 -50 -1232 -1232 211 -1232 187 -1232 -1232 -1232 120 -146 -76 -83 -1232 163 -1232 26 -1232 221 -1232 -1232 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCGAAYC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 5.4e-011 0.392157 0.019608 0.058824 0.529412 0.000000 0.000000 0.000000 1.000000 0.000000 0.803922 0.000000 0.196078 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.627451 0.078431 0.137255 0.156863 0.000000 0.666667 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCGAAYC MEME-1 regular expression -------------------------------------------------------------------------------- [TA]TCGAA[CT]C -------------------------------------------------------------------------------- Time 9.39 secs. ******************************************************************************** ******************************************************************************** MOTIF CGYGYGGC MEME-2 width = 8 sites = 30 llr = 272 E-value = 3.0e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGYGYGGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:::::: pos.-specific C 7:5:6::a probability G :91a:aa: matrix T 3:4:4::: bits 2.2 * *** 2.0 * *** 1.8 * *** 1.5 * * *** Relative 1.3 ** * *** Entropy 1.1 ** ***** (13.1 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCGGC consensus T T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGYGGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:4171103-4171183 62 6.31e-06 ATGTCATCTG CGCGCGGC ATATCTGCAA chrV:13962151-13962231 56 6.31e-06 GCATAAACTG CGCGCGGC AACTGCAAAA chrIII:4568714-4568794 9 6.31e-06 GAAAATGT CGCGCGGC GGAATTGCGA chrII:4238034-4238114 68 1.44e-05 TGCGAAAATG CGTGCGGC GCGTT chrI:3873938-3874018 3 1.44e-05 TT Cgtgcggc gagattgcga chrI:1175813-1175893 42 1.44e-05 ACATAAACTC CGTGCGGC ACACTTGCAA chrIV:3524816-3524896 6 2.25e-05 CTGGC CGCGTGGC GCAATGGATA chrX:13121245-13121325 47 2.25e-05 ccgggccgcc cgcgtggc aggcgagcat chrI:9267124-9267204 1 2.25e-05 . CGCGTGGC CTAATGGATA chrII:9566197-9566277 47 2.25e-05 TTTTCATGGC CGCGTGGC CTAATGGATA chrI:13470421-13470501 42 2.25e-05 TTGGAAAACG CGCGTGGC CGCGAGGGGG chrX:16928270-16928350 32 2.25e-05 ccgggccgcc cgcgtggc aggcgagcat chrIII:7198997-7199077 40 3.07e-05 AATTCAAATG TGCGCGGC CACGGCCACT chrII:10388145-10388225 66 3.07e-05 GTGAAAAAAG TGCGCGGC GCAATTG chrIV:143953-144033 32 4.11e-05 CGGTCATGGC CGTGTGGC CTAATGGATA chrX:14115654-14115734 40 4.11e-05 CTTTCGTGGC CGTGTGGC CTAATGGATA chrI:11323341-11323421 18 5.15e-05 ATGTCAAGTG TGTGCGGC GGTTTGCAAA chrI:1958521-1958601 24 5.15e-05 ACGGGAATTG TGTGCGGC GGTGTTGCGC chrV:11113339-11113419 21 5.15e-05 CCAAACgcaa tgtgcggc acgcgttttc chrIV:13386183-13386263 51 5.15e-05 CTGCAACAAG TGTGCGGC GTTGTTGCAA chrIII:3175148-3175228 12 5.15e-05 CTCTTAACTC TGTGCGGC ACCATTGCGG chrIII:8768059-8768139 23 5.15e-05 CTGAGTAAAC TGTGCGGC GTGTTTGCGG chrI:2514322-2514402 9 5.83e-05 TGGTGTTG CGGGCGGC AGGCGAACGT chrX:11252628-11252708 26 7.62e-05 TCCATTGCGC CACGCGGC CACACAGACT chrII:6898195-6898275 38 7.62e-05 GGTTTTCACC CACGCGGC CCGGGTTCGA chrX:4444266-4444346 35 7.62e-05 GGTTTTCACC CACGCGGC CCGGGTTCGA chrX:12338034-12338114 28 7.62e-05 TCCATTAGGC CACGCGGC CACATTTTTG chrI:2935685-2935765 38 8.96e-05 TGAAGTGAGT TGTGTGGC CGAGTGGTTA chrV:6889002-6889082 6 9.83e-05 ATGCA CGGGTGGC GCAGTTGGTT chrX:16602639-16602719 27 9.83e-05 ATTAACCCCC CGGGTGGC CGAATCAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGYGGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4171103-4171183 6.3e-06 61_[+2]_11 chrV:13962151-13962231 6.3e-06 55_[+2]_17 chrIII:4568714-4568794 6.3e-06 8_[+2]_64 chrII:4238034-4238114 1.4e-05 67_[+2]_5 chrI:3873938-3874018 1.4e-05 2_[+2]_70 chrI:1175813-1175893 1.4e-05 41_[+2]_31 chrIV:3524816-3524896 2.3e-05 5_[+2]_67 chrX:13121245-13121325 2.3e-05 46_[+2]_26 chrI:9267124-9267204 2.3e-05 [+2]_72 chrII:9566197-9566277 2.3e-05 46_[+2]_26 chrI:13470421-13470501 2.3e-05 41_[+2]_31 chrX:16928270-16928350 2.3e-05 31_[+2]_41 chrIII:7198997-7199077 3.1e-05 39_[+2]_33 chrII:10388145-10388225 3.1e-05 65_[+2]_7 chrIV:143953-144033 4.1e-05 31_[+2]_41 chrX:14115654-14115734 4.1e-05 39_[+2]_33 chrI:11323341-11323421 5.2e-05 17_[+2]_55 chrI:1958521-1958601 5.2e-05 23_[+2]_49 chrV:11113339-11113419 5.2e-05 20_[+2]_52 chrIV:13386183-13386263 5.2e-05 50_[+2]_22 chrIII:3175148-3175228 5.2e-05 11_[+2]_61 chrIII:8768059-8768139 5.2e-05 22_[+2]_50 chrI:2514322-2514402 5.8e-05 8_[+2]_64 chrX:11252628-11252708 7.6e-05 25_[+2]_47 chrII:6898195-6898275 7.6e-05 37_[+2]_35 chrX:4444266-4444346 7.6e-05 34_[+2]_38 chrX:12338034-12338114 7.6e-05 27_[+2]_45 chrI:2935685-2935765 9e-05 37_[+2]_35 chrV:6889002-6889082 9.8e-05 5_[+2]_67 chrX:16602639-16602719 9.8e-05 26_[+2]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGYGGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGYGYGGC width=8 seqs=30 chrIII:4171103-4171183 ( 62) CGCGCGGC 1 chrV:13962151-13962231 ( 56) CGCGCGGC 1 chrIII:4568714-4568794 ( 9) CGCGCGGC 1 chrII:4238034-4238114 ( 68) CGTGCGGC 1 chrI:3873938-3874018 ( 3) CGTGCGGC 1 chrI:1175813-1175893 ( 42) CGTGCGGC 1 chrIV:3524816-3524896 ( 6) CGCGTGGC 1 chrX:13121245-13121325 ( 47) CGCGTGGC 1 chrI:9267124-9267204 ( 1) CGCGTGGC 1 chrII:9566197-9566277 ( 47) CGCGTGGC 1 chrI:13470421-13470501 ( 42) CGCGTGGC 1 chrX:16928270-16928350 ( 32) CGCGTGGC 1 chrIII:7198997-7199077 ( 40) TGCGCGGC 1 chrII:10388145-10388225 ( 66) TGCGCGGC 1 chrIV:143953-144033 ( 32) CGTGTGGC 1 chrX:14115654-14115734 ( 40) CGTGTGGC 1 chrI:11323341-11323421 ( 18) TGTGCGGC 1 chrI:1958521-1958601 ( 24) TGTGCGGC 1 chrV:11113339-11113419 ( 21) TGTGCGGC 1 chrIV:13386183-13386263 ( 51) TGTGCGGC 1 chrIII:3175148-3175228 ( 12) TGTGCGGC 1 chrIII:8768059-8768139 ( 23) TGTGCGGC 1 chrI:2514322-2514402 ( 9) CGGGCGGC 1 chrX:11252628-11252708 ( 26) CACGCGGC 1 chrII:6898195-6898275 ( 38) CACGCGGC 1 chrX:4444266-4444346 ( 35) CACGCGGC 1 chrX:12338034-12338114 ( 28) CACGCGGC 1 chrI:2935685-2935765 ( 38) TGTGTGGC 1 chrV:6889002-6889082 ( 6) CGGGTGGC 1 chrX:16602639-16602719 ( 27) CGGGTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGYGGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.229 E= 3.0e-008 -1155 170 -1155 11 -103 -1155 190 -1155 -1155 121 -122 52 -1155 -1155 210 -1155 -1155 155 -1155 40 -1155 -1155 210 -1155 -1155 -1155 210 -1155 -1155 221 -1155 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGYGGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 3.0e-008 0.000000 0.700000 0.000000 0.300000 0.133333 0.000000 0.866667 0.000000 0.000000 0.500000 0.100000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 0.633333 0.000000 0.366667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGYGGC MEME-2 regular expression -------------------------------------------------------------------------------- [CT]G[CT]G[CT]GGC -------------------------------------------------------------------------------- Time 14.03 secs. ******************************************************************************** ******************************************************************************** MOTIF AACCACTA MEME-3 width = 8 sites = 15 llr = 148 E-value = 1.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACCACTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 7a::a::8 pos.-specific C 1:aa:a:2 probability G :::::::: matrix T 1:::::a: bits 2.2 ** * 2.0 ** * 1.8 ****** 1.5 ****** Relative 1.3 ******* Entropy 1.1 ******* (14.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AACCACTA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCACTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:8530144-8530224 36 1.56e-05 CATAAATCCT AACCACTA GACCACAACG chrIV:8375530-8375610 63 1.56e-05 CACGTCTCTT AACCACTA GACCAAGCGT chrIV:1388202-1388282 66 1.56e-05 CACGAATCCT AACCACTA GACCACA chrII:5577199-5577279 54 1.56e-05 CAGACGTGAT AACCACTA CACCATAGGA chrII:3521481-3521561 58 1.56e-05 GTGGAGTACT AACCACTA TACTACGCAG chrIII:7642161-7642241 49 1.56e-05 CATAAATCCT AACCACTA GACCACAACG chrX:12367673-12367753 21 1.56e-05 CACGAATCCT AACCACTA GACCACATGG chrII:9301188-9301268 5 1.56e-05 AAAT AACCACTA ATTTGCTCTC chrV:12596976-12597056 56 2.79e-05 CTGAGGACAC AACCACTC GGCCATCGAA chrV:12780414-12780494 34 2.79e-05 CCAACTCCTT AACCACTC GGACATCGCA chrI:12229341-12229421 25 2.79e-05 GGTGGATCGA AACCACTC GCTGCTAGAC chrV:15551784-15551864 67 4.02e-05 cgcggatact caccacta tactac chrI:2830169-2830249 40 4.02e-05 TCTGACGTTT CACCACTA ATCATTGGAT chrX:9467734-9467814 47 5.60e-05 GCGAGAATCA TACCACTA GACCATTCGG chrIV:3233145-3233225 48 5.60e-05 ctactactac taccacta caactagtat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCACTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8530144-8530224 1.6e-05 35_[+3]_37 chrIV:8375530-8375610 1.6e-05 62_[+3]_10 chrIV:1388202-1388282 1.6e-05 65_[+3]_7 chrII:5577199-5577279 1.6e-05 53_[+3]_19 chrII:3521481-3521561 1.6e-05 57_[+3]_15 chrIII:7642161-7642241 1.6e-05 48_[+3]_24 chrX:12367673-12367753 1.6e-05 20_[+3]_52 chrII:9301188-9301268 1.6e-05 4_[+3]_68 chrV:12596976-12597056 2.8e-05 55_[+3]_17 chrV:12780414-12780494 2.8e-05 33_[+3]_39 chrI:12229341-12229421 2.8e-05 24_[+3]_48 chrV:15551784-15551864 4e-05 66_[+3]_6 chrI:2830169-2830249 4e-05 39_[+3]_33 chrX:9467734-9467814 5.6e-05 46_[+3]_26 chrIV:3233145-3233225 5.6e-05 47_[+3]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCACTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACCACTA width=8 seqs=15 chrI:8530144-8530224 ( 36) AACCACTA 1 chrIV:8375530-8375610 ( 63) AACCACTA 1 chrIV:1388202-1388282 ( 66) AACCACTA 1 chrII:5577199-5577279 ( 54) AACCACTA 1 chrII:3521481-3521561 ( 58) AACCACTA 1 chrIII:7642161-7642241 ( 49) AACCACTA 1 chrX:12367673-12367753 ( 21) AACCACTA 1 chrII:9301188-9301268 ( 5) AACCACTA 1 chrV:12596976-12597056 ( 56) AACCACTC 1 chrV:12780414-12780494 ( 34) AACCACTC 1 chrI:12229341-12229421 ( 25) AACCACTC 1 chrV:15551784-15551864 ( 67) CACCACTA 1 chrI:2830169-2830249 ( 40) CACCACTA 1 chrX:9467734-9467814 ( 47) TACCACTA 1 chrIV:3233145-3233225 ( 48) TACCACTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCACTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9222 E= 1.9e+000 142 -70 -1055 -106 187 -1055 -1055 -1055 -1055 221 -1055 -1055 -1055 221 -1055 -1055 187 -1055 -1055 -1055 -1055 221 -1055 -1055 -1055 -1055 -1055 185 155 -11 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCACTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.9e+000 0.733333 0.133333 0.000000 0.133333 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.800000 0.200000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCACTA MEME-3 regular expression -------------------------------------------------------------------------------- AACCACT[AC] -------------------------------------------------------------------------------- Time 17.61 secs. ******************************************************************************** ******************************************************************************** MOTIF CSBGCCGC MEME-4 width = 8 sites = 14 llr = 139 E-value = 1.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSBGCCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1:::::: pos.-specific C a44:aa:a probability G :54a::a: matrix T ::2::::: bits 2.2 * ***** 2.0 * ***** 1.8 * ***** 1.5 * ***** Relative 1.3 * ***** Entropy 1.1 * ***** (14.3 bits) 0.9 * ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCCGC consensus CG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSBGCCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:3873938-3874018 26 5.87e-06 tgcgaatagg cgcgccgc acattgcAAA chrV:11239337-11239417 51 1.76e-05 TTTTTGCAAC CCCGCCGC ATGCGGTAGT chrIV:1388202-1388282 36 1.76e-05 GAATCGAACC CGGGCCGC GTGGGTGAAA chrX:13121245-13121325 38 1.76e-05 gaatcgaacc cgggccgc ccgcgtggca chrI:2935685-2935765 65 1.76e-05 AACACGCTCA CCCGCCGC GCGAGACA chrIV:5371107-5371187 37 1.76e-05 GCTTCCGCAA CCCGCCGC ATAGTTTTTT chrX:16928270-16928350 23 1.76e-05 gaatcgaacc cgggccgc ccgcgtggca chrIV:2639775-2639855 56 1.76e-05 GAATCGAAAC CGGGCCGC GTGGGTGAAA chrX:9296712-9296792 65 1.76e-05 CCCCATGCAA CCCGCCGC ATGGTGTT chrIII:3175148-3175228 35 3.11e-05 TGCGGAACAC CGTGCCGC TTGCTTGCAA chrX:12367673-12367753 52 3.11e-05 GACGAGAGAC CGTGCCGC ATCGGAATAG chrI:9988854-9988934 44 3.81e-05 CATTTCCGTG CCTGCCGC TCTTGCATCT chrIII:3664366-3664446 51 4.50e-05 TCGCTTGCAA CACGCCGC GCGCATTTCG chrIV:8253004-8253084 64 5.24e-05 TCTCGTCCAA CAGGCCGC TGGTTTGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSBGCCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:3873938-3874018 5.9e-06 25_[+4]_47 chrV:11239337-11239417 1.8e-05 50_[+4]_22 chrIV:1388202-1388282 1.8e-05 35_[+4]_37 chrX:13121245-13121325 1.8e-05 37_[+4]_35 chrI:2935685-2935765 1.8e-05 64_[+4]_8 chrIV:5371107-5371187 1.8e-05 36_[+4]_36 chrX:16928270-16928350 1.8e-05 22_[+4]_50 chrIV:2639775-2639855 1.8e-05 55_[+4]_17 chrX:9296712-9296792 1.8e-05 64_[+4]_8 chrIII:3175148-3175228 3.1e-05 34_[+4]_38 chrX:12367673-12367753 3.1e-05 51_[+4]_21 chrI:9988854-9988934 3.8e-05 43_[+4]_29 chrIII:3664366-3664446 4.5e-05 50_[+4]_22 chrIV:8253004-8253084 5.2e-05 63_[+4]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSBGCCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSBGCCGC width=8 seqs=14 chrI:3873938-3874018 ( 26) CGCGCCGC 1 chrV:11239337-11239417 ( 51) CCCGCCGC 1 chrIV:1388202-1388282 ( 36) CGGGCCGC 1 chrX:13121245-13121325 ( 38) CGGGCCGC 1 chrI:2935685-2935765 ( 65) CCCGCCGC 1 chrIV:5371107-5371187 ( 37) CCCGCCGC 1 chrX:16928270-16928350 ( 23) CGGGCCGC 1 chrIV:2639775-2639855 ( 56) CGGGCCGC 1 chrX:9296712-9296792 ( 65) CCCGCCGC 1 chrIII:3175148-3175228 ( 35) CGTGCCGC 1 chrX:12367673-12367753 ( 52) CGTGCCGC 1 chrI:9988854-9988934 ( 44) CCTGCCGC 1 chrIII:3664366-3664446 ( 51) CACGCCGC 1 chrIV:8253004-8253084 ( 64) CAGGCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSBGCCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.0178 E= 1.9e+001 -1045 221 -1045 -1045 -93 72 110 -1045 -1045 99 62 -38 -1045 -1045 210 -1045 -1045 221 -1045 -1045 -1045 221 -1045 -1045 -1045 -1045 210 -1045 -1045 221 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSBGCCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.9e+001 0.000000 1.000000 0.000000 0.000000 0.142857 0.357143 0.500000 0.000000 0.000000 0.428571 0.357143 0.214286 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSBGCCGC MEME-4 regular expression -------------------------------------------------------------------------------- C[GC][CGT]GCCGC -------------------------------------------------------------------------------- Time 21.15 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCKCGC MEME-5 width = 8 sites = 14 llr = 137 E-value = 1.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCKCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1:::::1: pos.-specific C :a:a:9:a probability G 8:a:4:9: matrix T 1:::61:: bits 2.2 *** * 2.0 *** * 1.8 *** ** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 **** *** (14.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCTCGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCKCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:9503539-9503619 45 7.56e-06 CAGGGGTAGA GCGCTCGC TTCGCATGCG chrX:6286292-6286372 51 7.56e-06 CAGGGGTAGA GCGCTCGC TTTGCATGCG chrII:7001608-7001688 41 7.56e-06 CAGGGGTAGA GCGCTCGC TTTGCATGCG chrIII:5555084-5555164 53 1.39e-05 TGCGCAAAAA GCGCGCGC ACATTGCGTT chrV:6709215-6709295 27 1.39e-05 TCTGCAACGC GCGCGCGC GTTTTTCGCA chrV:4731556-4731636 46 1.39e-05 GCAAAAACGC GCGCGCGC ATTGCATGTA chrII:7708725-7708805 29 1.39e-05 ACAATGCAAT GCGCGCGC ACGGTTTTTG chrIV:5371107-5371187 21 1.39e-05 CAACTCCGCG GCGCGCGC TTCCGCAACC chrX:11643923-11644003 22 2.29e-05 ACACATACGC TCGCTCGC Tcacacacac chrI:11323341-11323421 38 4.02e-05 TTTGCAAATA TCGCGCGC CCGCATTGCA chrV:6889002-6889082 63 4.02e-05 TTGTTCGACT GCGCTTGC TGGCCTCGAT chrIII:4568714-4568794 39 4.02e-05 AACACGTGCG GCGCTTGC AAATCAATCG chrIII:9629969-9630049 5 5.72e-05 TGCA ACGCTCGC ACGCAGTTTT chrX:9225421-9225501 58 7.35e-05 ACACGCTGCC GCGCTCAC CACCCTCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCKCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:9503539-9503619 7.6e-06 44_[+5]_28 chrX:6286292-6286372 7.6e-06 50_[+5]_22 chrII:7001608-7001688 7.6e-06 40_[+5]_32 chrIII:5555084-5555164 1.4e-05 52_[+5]_20 chrV:6709215-6709295 1.4e-05 26_[+5]_46 chrV:4731556-4731636 1.4e-05 45_[+5]_27 chrII:7708725-7708805 1.4e-05 28_[+5]_44 chrIV:5371107-5371187 1.4e-05 20_[+5]_52 chrX:11643923-11644003 2.3e-05 21_[+5]_51 chrI:11323341-11323421 4e-05 37_[+5]_35 chrV:6889002-6889082 4e-05 62_[+5]_10 chrIII:4568714-4568794 4e-05 38_[+5]_34 chrIII:9629969-9630049 5.7e-05 4_[+5]_68 chrX:9225421-9225501 7.4e-05 57_[+5]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCKCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCKCGC width=8 seqs=14 chrV:9503539-9503619 ( 45) GCGCTCGC 1 chrX:6286292-6286372 ( 51) GCGCTCGC 1 chrII:7001608-7001688 ( 41) GCGCTCGC 1 chrIII:5555084-5555164 ( 53) GCGCGCGC 1 chrV:6709215-6709295 ( 27) GCGCGCGC 1 chrV:4731556-4731636 ( 46) GCGCGCGC 1 chrII:7708725-7708805 ( 29) GCGCGCGC 1 chrIV:5371107-5371187 ( 21) GCGCGCGC 1 chrX:11643923-11644003 ( 22) TCGCTCGC 1 chrI:11323341-11323421 ( 38) TCGCGCGC 1 chrV:6889002-6889082 ( 63) GCGCTTGC 1 chrIII:4568714-4568794 ( 39) GCGCTTGC 1 chrIII:9629969-9630049 ( 5) ACGCTCGC 1 chrX:9225421-9225501 ( 58) GCGCTCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCKCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5702 E= 1.2e+002 -193 -1045 176 -96 -1045 221 -1045 -1045 -1045 -1045 210 -1045 -1045 221 -1045 -1045 -1045 -1045 88 104 -1045 199 -1045 -96 -193 -1045 200 -1045 -1045 221 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCKCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.2e+002 0.071429 0.000000 0.785714 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.857143 0.000000 0.142857 0.071429 0.000000 0.928571 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCKCGC MEME-5 regular expression -------------------------------------------------------------------------------- GCGC[TG]CGC -------------------------------------------------------------------------------- Time 24.65 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:169-249 5.75e-01 80 chrM:5559-5639 1.00e+00 80 chrM:9687-9767 9.99e-01 80 chrM:7607-7687 9.78e-01 80 chrX:5056376-5056456 2.25e-01 80 chrM:4002-4082 9.99e-01 80 chrM:5778-5858 9.92e-01 80 chrII:11537768-11537848 6.73e-02 80 chrM:9892-9972 1.00e+00 80 chrV:16699966-16700046 1.00e+00 80 chrII:2570713-2570793 9.86e-01 80 chrM:2781-2861 1.00e+00 80 chrI:933477-933557 3.04e-01 80 chrIV:7487752-7487832 3.87e-01 80 chrM:6984-7064 9.95e-01 80 chrIV:8334497-8334577 3.75e-01 80 chrM:9457-9537 9.95e-01 80 chrII:13986215-13986295 9.96e-01 80 chrIII:445666-445746 1.00e+00 80 chrIII:931566-931646 9.99e-01 80 chrM:10803-10883 9.55e-01 80 chrM:1053-1133 1.00e+00 80 chrII:51005-51085 9.99e-01 80 chrM:7806-7886 1.00e+00 80 chrII:4130272-4130352 1.00e+00 80 chrM:13599-13679 1.00e+00 80 chrIII:3500015-3500095 8.01e-01 80 chrI:3567625-3567705 1.00e+00 80 chrX:8156103-8156183 3.11e-01 80 chrV:15282194-15282274 9.99e-01 80 chrX:16944324-16944404 9.96e-01 80 chrIV:12605442-12605522 1.00e+00 80 chrIII:12598944-12599024 5.77e-01 80 chrI:11747036-11747116 9.47e-01 80 chrX:8603159-8603239 1.00e+00 80 chrII:416842-416922 9.00e-01 80 chrI:5300629-5300709 9.95e-01 80 chrII:272688-272768 8.70e-01 80 chrV:13868934-13869014 1.00e+00 80 chrV:19637453-19637533 6.62e-01 80 chrM:4685-4765 8.72e-01 80 chrM:1312-1392 9.93e-01 80 chrM:2321-2401 1.40e-01 80 chrX:12338034-12338114 2.32e-02 27_[+2(7.62e-05)]_45 chrM:12611-12691 9.84e-01 80 chrII:3049-3129 9.75e-01 80 chrII:232174-232254 6.41e-01 80 chrII:4130478-4130558 1.30e-01 80 chrX:12890253-12890333 1.10e-01 80 chrIV:3176632-3176712 9.88e-01 80 chrM:9252-9332 9.37e-01 80 chrII:98144-98224 2.86e-01 53_[+1(4.40e-05)]_19 chrM:12412-12492 9.94e-01 80 chrIII:3476364-3476444 9.90e-01 80 chrII:11974639-11974719 8.92e-01 80 chrII:7001608-7001688 1.07e-03 40_[+5(7.56e-06)]_32 chrIII:6133591-6133671 8.67e-01 80 chrX:14115654-14115734 7.11e-02 39_[+2(4.11e-05)]_33 chrIV:13549491-13549571 7.81e-01 80 chrX:3914440-3914520 2.37e-01 80 chrX:9296712-9296792 7.27e-02 64_[+4(1.76e-05)]_8 chrV:16041064-16041144 6.74e-01 80 chrI:12229341-12229421 3.08e-03 24_[+3(2.79e-05)]_48 chrII:8716587-8716667 9.64e-01 80 chrI:9176246-9176326 1.52e-01 80 chrIV:9774354-9774434 9.74e-01 80 chrX:9225421-9225501 4.92e-03 57_[+5(7.35e-05)]_15 chrII:146880-146960 5.75e-01 80 chrV:19723023-19723103 1.62e-03 60_[+1(7.25e-05)]_12 chrX:14804883-14804963 4.22e-01 80 chrX:8638987-8639067 9.92e-01 80 chrIII:4426843-4426923 6.95e-01 80 chrV:14855842-14855922 6.38e-01 80 chrIII:10670124-10670204 6.00e-01 80 chrIII:3664366-3664446 8.31e-04 40_[+5(9.26e-05)]_2_[+4(4.50e-05)]_\ 22 chrX:8925645-8925725 8.87e-02 80 chrII:9295429-9295509 8.34e-01 80 chrX:8386164-8386244 3.01e-01 80 chrI:1175813-1175893 4.20e-03 41_[+2(1.44e-05)]_31 chrV:1875851-1875931 1.69e-01 80 chrII:164708-164788 7.82e-01 80 chrIV:14034231-14034311 3.99e-01 80 chrI:1575663-1575743 1.77e-02 80 chrV:11933504-11933584 9.95e-01 80 chrIII:9051075-9051155 1.00e+00 80 chrX:8602861-8602941 1.00e+00 80 chrIV:2639775-2639855 9.22e-05 55_[+4(1.76e-05)]_17 chrII:9301188-9301268 1.76e-02 4_[+3(1.56e-05)]_68 chrIV:14077021-14077101 1.00e+00 80 chrIII:8650345-8650425 2.05e-02 49_[+1(2.67e-05)]_23 chrI:11075165-11075245 2.92e-01 80 chrII:5293424-5293504 4.17e-01 80 chrIV:9048255-9048335 9.99e-01 80 chrI:2830169-2830249 1.33e-01 39_[+3(4.02e-05)]_33 chrIII:640577-640657 8.12e-01 80 chrI:12741244-12741324 1.39e-01 80 chrI:7474880-7474960 8.25e-01 80 chrII:7812379-7812459 7.55e-01 80 chrV:126686-126766 1.00e+00 80 chrIII:12613628-12613708 6.36e-01 80 chrX:16928270-16928350 9.60e-07 14_[+1(2.67e-05)]_[+4(1.76e-05)]_1_\ [+2(2.25e-05)]_41 chrX:16602639-16602719 3.08e-04 26_[+2(9.83e-05)]_46 chrX:13145001-13145081 8.03e-01 80 chrI:12225454-12225534 1.22e-01 80 chrV:1003894-1003974 4.72e-01 80 chrIV:14032769-14032849 8.40e-01 80 chrX:3994576-3994656 4.12e-01 80 chrIII:10624820-10624900 9.06e-01 80 chrV:12780414-12780494 6.69e-02 33_[+3(2.79e-05)]_39 chrII:4942475-4942555 8.12e-01 80 chrI:13310248-13310328 7.89e-01 80 chrX:12367673-12367753 1.33e-04 20_[+3(1.56e-05)]_23_[+4(3.11e-05)]_\ 21 chrII:386073-386153 8.09e-01 80 chrX:4444266-4444346 1.93e-03 34_[+2(7.62e-05)]_38 chrIV:2390472-2390552 7.30e-01 80 chrX:16551432-16551512 5.15e-01 80 chrIII:7642161-7642241 6.78e-04 10_[+1(2.67e-05)]_30_[+3(1.56e-05)]_\ 24 chrIII:8653080-8653160 1.72e-01 27_[+1(8.62e-05)]_45 chrII:2860382-2860462 3.88e-02 21_[+1(4.40e-05)]_51 chrV:19522619-19522699 8.63e-01 80 chrX:4789064-4789144 8.77e-01 80 chrIII:7030541-7030621 2.18e-02 29_[+1(2.67e-05)]_43 chrI:6136610-6136690 5.50e-02 39_[+1(7.25e-05)]_33 chrM:8313-8393 1.86e-01 80 chrIV:3233145-3233225 1.77e-01 47_[+3(5.60e-05)]_25 chrX:12510227-12510307 9.85e-01 80 chrII:11545723-11545803 9.63e-01 80 chrII:6898195-6898275 1.93e-03 37_[+2(7.62e-05)]_35 chrIII:8768059-8768139 1.58e-03 22_[+2(5.15e-05)]_50 chrIII:1604768-1604848 9.40e-02 80 chrIV:5371107-5371187 2.51e-04 20_[+5(1.39e-05)]_8_[+4(1.76e-05)]_\ 36 chrIV:9191348-9191428 7.76e-01 80 chrI:2935685-2935765 4.69e-05 37_[+2(8.96e-05)]_19_[+4(1.76e-05)]_\ 8 chrIV:2805606-2805686 7.54e-01 80 chrX:11643923-11644003 1.28e-01 21_[+5(2.29e-05)]_51 chrI:1823223-1823303 3.43e-02 80 chrII:7708725-7708805 4.98e-02 28_[+5(1.39e-05)]_44 chrII:14063113-14063193 7.56e-01 80 chrII:8547083-8547163 3.19e-01 80 chrV:4731556-4731636 2.07e-02 43_[+5(1.39e-05)]_29 chrX:6286292-6286372 1.61e-02 50_[+5(7.56e-06)]_22 chrIV:11026142-11026222 5.13e-02 80 chrX:8646413-8646493 3.59e-01 80 chrV:20694112-20694192 1.63e-01 80 chrII:3521481-3521561 1.62e-05 19_[+1(2.67e-05)]_30_[+3(1.56e-05)]_\ 15 chrIV:17087540-17087620 9.98e-01 80 chrIII:12399833-12399913 5.12e-01 80 chrII:5577199-5577279 7.50e-04 14_[+1(1.35e-05)]_31_[+3(1.56e-05)]_\ 19 chrII:14635381-14635461 7.34e-02 80 chrIII:4568714-4568794 3.25e-05 8_[+2(6.31e-06)]_16_[+2(1.44e-05)]_\ 40 chrV:13176492-13176572 1.45e-01 80 chrX:3348074-3348154 7.28e-02 80 chrI:14721623-14721703 2.80e-01 80 chrII:14143996-14144076 9.91e-01 80 chrX:5707983-5708063 8.97e-02 80 chrI:13421193-13421273 8.36e-01 80 chrV:7231049-7231129 4.52e-01 80 chrIV:14013771-14013851 4.56e-02 47_[+1(2.67e-05)]_25 chrX:16930012-16930092 8.62e-01 80 chrIII:9861673-9861753 1.99e-01 80 chrII:6248634-6248714 1.16e-02 80 chrX:6371350-6371430 1.92e-02 80 chrV:15551784-15551864 3.67e-04 66_[+3(4.02e-05)]_6 chrV:19126028-19126108 3.11e-02 68_[+1(8.62e-05)]_4 chrI:13470421-13470501 1.46e-02 41_[+2(2.25e-05)]_31 chrV:13962151-13962231 5.55e-04 55_[+2(6.31e-06)]_17 chrIV:11310672-11310752 4.82e-01 80 chrIV:796687-796767 6.65e-01 80 chrX:14490212-14490292 3.84e-02 80 chrIV:9477706-9477786 9.38e-02 80 chrII:9566197-9566277 3.31e-02 46_[+2(2.25e-05)]_26 chrX:13415108-13415188 6.21e-02 80 chrX:9637896-9637976 1.99e-01 80 chrII:11547389-11547469 4.99e-01 80 chrII:10388145-10388225 1.22e-02 65_[+2(3.07e-05)]_7 chrIV:16382314-16382394 6.41e-01 80 chrIII:3175148-3175228 3.55e-04 11_[+2(5.15e-05)]_15_[+4(3.11e-05)]_\ 38 chrIII:4369563-4369643 5.30e-01 80 chrIV:13386183-13386263 1.13e-01 50_[+2(5.15e-05)]_22 chrI:11505555-11505635 4.22e-01 80 chrX:11644122-11644202 3.70e-01 80 chrIII:9104174-9104254 3.29e-03 80 chrX:5319317-5319397 8.73e-01 80 chrX:14747140-14747220 8.39e-02 80 chrIII:1122405-1122485 1.77e-04 17_[+4(1.76e-05)]_55 chrIII:11371405-11371485 1.16e-03 80 chrIV:143953-144033 1.30e-02 31_[+2(4.11e-05)]_41 chrIII:6158792-6158872 3.66e-02 47_[+1(4.40e-05)]_25 chrI:9267124-9267204 4.28e-04 [+2(2.25e-05)]_21_[+1(4.40e-05)]_43 chrII:6346633-6346713 1.38e-01 7_[+1(6.10e-05)]_65 chrI:2410194-2410274 9.87e-01 80 chrI:9988854-9988934 1.37e-02 43_[+4(3.81e-05)]_29 chrX:13511877-13511957 8.68e-01 80 chrV:11113339-11113419 4.03e-02 20_[+2(5.15e-05)]_52 chrIII:7198997-7199077 9.19e-04 39_[+2(3.07e-05)]_33 chrIV:3552165-3552245 2.15e-02 37_[+1(2.67e-05)]_35 chrIII:89316-89396 1.60e-01 80 chrX:13121245-13121325 9.60e-07 29_[+1(2.67e-05)]_[+4(1.76e-05)]_1_\ [+2(2.25e-05)]_26 chrX:11252628-11252708 3.22e-02 25_[+2(7.62e-05)]_47 chrIV:1388202-1388282 1.13e-06 27_[+1(2.67e-05)]_[+4(1.76e-05)]_22_\ [+3(1.56e-05)]_7 chrX:1880832-1880912 2.06e-02 80 chrV:6889002-6889082 1.89e-03 5_[+2(9.83e-05)]_23_[+5(4.02e-05)]_\ 18_[+5(4.02e-05)]_10 chrI:3873938-3874018 5.59e-05 2_[+2(1.44e-05)]_15_[+4(5.87e-06)]_\ 47 chrII:9774836-9774916 1.42e-01 80 chrX:12458159-12458239 4.69e-02 80 chrIV:3524816-3524896 7.82e-05 5_[+2(2.25e-05)]_42_[+1(4.40e-05)]_\ 17 chrIII:8106644-8106724 3.24e-02 61_[+1(7.25e-05)]_11 chrIII:4171103-4171183 5.87e-04 61_[+2(6.31e-06)]_11 chrII:10169425-10169505 8.14e-01 80 chrIV:11602114-11602194 4.98e-01 80 chrII:4238034-4238114 3.73e-03 44_[+2(1.44e-05)]_15_[+2(1.44e-05)]_\ 5 chrII:3502761-3502841 8.50e-01 80 chrIII:9629969-9630049 2.97e-02 4_[+5(5.72e-05)]_68 chrX:12843743-12843823 7.42e-01 80 chrIII:4470952-4471032 2.62e-01 80 chrII:5292364-5292444 8.34e-01 80 chrX:10132687-10132767 2.85e-02 43_[+1(4.40e-05)]_29 chrI:13297603-13297683 1.00e+00 80 chrV:12596976-12597056 7.34e-04 55_[+3(2.79e-05)]_4_[+1(6.10e-05)]_\ 5 chrI:1416002-1416082 9.99e-01 80 chrI:2514322-2514402 1.86e-02 8_[+2(5.83e-05)]_64 chrX:13264654-13264734 2.45e-02 42_[+1(1.35e-05)]_30 chrI:1958521-1958601 1.62e-01 23_[+2(5.15e-05)]_15_[+2(5.15e-05)]_\ 26 chrIII:4378833-4378913 8.35e-01 80 chrIV:620608-620688 9.20e-01 80 chrIV:8253004-8253084 4.27e-02 63_[+4(5.24e-05)]_9 chrIII:5602189-5602269 3.72e-01 80 chrV:6709215-6709295 1.69e-02 24_[+5(1.39e-05)]_48 chrV:9503539-9503619 1.88e-02 44_[+5(7.56e-06)]_28 chrI:13161073-13161153 8.08e-02 40_[+1(7.25e-05)]_32 chrV:11239337-11239417 2.37e-03 50_[+4(1.76e-05)]_22 chrII:6853172-6853252 4.89e-01 80 chrIV:8375530-8375610 8.26e-02 62_[+3(1.56e-05)]_10 chrII:8107275-8107355 3.27e-02 80 chrIV:7085046-7085126 9.99e-01 80 chrX:10963823-10963903 4.66e-02 80 chrI:8530144-8530224 1.00e-02 35_[+3(1.56e-05)]_37 chrX:6292301-6292381 5.42e-02 80 chrIII:5555084-5555164 2.62e-03 52_[+5(1.39e-05)]_20 chrI:11323341-11323421 7.74e-06 17_[+2(5.15e-05)]_12_[+5(4.02e-05)]_\ 35 chrI:14737466-14737546 7.99e-03 80 chrII:5390029-5390109 9.66e-01 80 chrIII:13269011-13269091 6.95e-01 80 chrX:12661222-12661302 7.77e-02 5_[+1(7.25e-05)]_67 chrX:9467734-9467814 1.24e-03 46_[+3(5.60e-05)]_26 chrIII:11142217-11142297 8.05e-01 80 chrX:15297493-15297573 3.36e-02 80 chrV:13003586-13003666 9.05e-01 80 chrX:3970148-3970228 6.50e-01 80 chrX:3697753-3697833 3.73e-02 55_[+1(7.25e-05)]_17 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************