******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/hlh-8.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:16385244-16385324 1.0000 80 chrI:4943037-4943117 1.0000 80 chrX:8117986-8118066 1.0000 80 chrI:5411492-5411572 1.0000 80 chrIV:5929121-5929201 1.0000 80 chrIV:5172153-5172233 1.0000 80 chrX:11374762-11374842 1.0000 80 chrIV:11713490-11713570 1.0000 80 chrIV:10804133-10804213 1.0000 80 chrI:13501065-13501145 1.0000 80 chrIV:1895137-1895217 1.0000 80 chrII:160729-160809 1.0000 80 chrII:10039953-10040033 1.0000 80 chrIII:8765187-8765267 1.0000 80 chrIII:11454182-11454262 1.0000 80 chrV:5039699-5039779 1.0000 80 chrI:7520220-7520300 1.0000 80 chrIII:1372708-1372788 1.0000 80 chrIV:12685948-12686028 1.0000 80 chrV:9283636-9283716 1.0000 80 chrX:7151679-7151759 1.0000 80 chrIV:3844149-3844229 1.0000 80 chrIII:6156543-6156623 1.0000 80 chrIII:5980687-5980767 1.0000 80 chrI:9016308-9016388 1.0000 80 chrII:2206200-2206280 1.0000 80 chrV:7826630-7826710 1.0000 80 chrIV:6995344-6995424 1.0000 80 chrIV:8924291-8924371 1.0000 80 chrIII:4195802-4195882 1.0000 80 chrI:6238364-6238444 1.0000 80 chrV:11528788-11528868 1.0000 80 chrI:5020219-5020299 1.0000 80 chrI:7945592-7945672 1.0000 80 chrIV:3168793-3168873 1.0000 80 chrII:11688168-11688248 1.0000 80 chrV:20421868-20421948 1.0000 80 chrI:9374783-9374863 1.0000 80 chrX:7151885-7151965 1.0000 80 chrV:7824315-7824395 1.0000 80 chrIII:7463326-7463406 1.0000 80 chrIV:15473597-15473677 1.0000 80 chrI:3472883-3472963 1.0000 80 chrIII:7460183-7460263 1.0000 80 chrX:1110917-1110997 1.0000 80 chrX:8116506-8116586 1.0000 80 chrV:122913-122993 1.0000 80 chrIV:10512982-10513062 1.0000 80 chrIII:3583488-3583568 1.0000 80 chrII:2804321-2804401 1.0000 80 chrX:17062404-17062484 1.0000 80 chrI:10506324-10506404 1.0000 80 chrII:9265070-9265150 1.0000 80 chrIII:5976191-5976271 1.0000 80 chrIII:9483948-9484028 1.0000 80 chrI:9848443-9848523 1.0000 80 chrX:6151138-6151218 1.0000 80 chrV:20486705-20486785 1.0000 80 chrI:11203358-11203438 1.0000 80 chrV:20711867-20711947 1.0000 80 chrII:12660065-12660145 1.0000 80 chrV:13395531-13395611 1.0000 80 chrI:2045083-2045163 1.0000 80 chrII:160932-161012 1.0000 80 chrIV:13549460-13549540 1.0000 80 chrI:4947935-4948015 1.0000 80 chrI:7200991-7201071 1.0000 80 chrX:3711854-3711934 1.0000 80 chrX:17040391-17040471 1.0000 80 chrX:8118186-8118266 1.0000 80 chrV:6470168-6470248 1.0000 80 chrII:8499179-8499259 1.0000 80 chrIII:11093644-11093724 1.0000 80 chrI:5240763-5240843 1.0000 80 chrIII:7792069-7792149 1.0000 80 chrII:13193870-13193950 1.0000 80 chrIV:7942208-7942288 1.0000 80 chrI:2487853-2487933 1.0000 80 chrV:3677378-3677458 1.0000 80 chrII:134091-134171 1.0000 80 chrI:12675354-12675434 1.0000 80 chrV:16553130-16553210 1.0000 80 chrIV:2136730-2136810 1.0000 80 chrX:7613590-7613670 1.0000 80 chrIII:10475347-10475427 1.0000 80 chrIII:9808276-9808356 1.0000 80 chrII:11555839-11555919 1.0000 80 chrIV:1108211-1108291 1.0000 80 chrM:180-260 1.0000 80 chrII:6823345-6823425 1.0000 80 chrII:2687095-2687175 1.0000 80 chrI:12480909-12480989 1.0000 80 chrII:13788996-13789076 1.0000 80 chrIII:4905485-4905565 1.0000 80 chrV:6342743-6342823 1.0000 80 chrIV:1687357-1687437 1.0000 80 chrIII:13037051-13037131 1.0000 80 chrV:14808326-14808406 1.0000 80 chrIV:5079066-5079146 1.0000 80 chrIV:17108360-17108440 1.0000 80 chrIII:5563881-5563961 1.0000 80 chrI:4046788-4046868 1.0000 80 chrX:1053079-1053159 1.0000 80 chrIV:5970671-5970751 1.0000 80 chrI:9550822-9550902 1.0000 80 chrV:19897721-19897801 1.0000 80 chrIV:13001419-13001499 1.0000 80 chrIII:5183584-5183664 1.0000 80 chrIII:9191345-9191425 1.0000 80 chrX:7236961-7237041 1.0000 80 chrII:9667475-9667555 1.0000 80 chrV:7740946-7741026 1.0000 80 chrIII:6978954-6979034 1.0000 80 chrIV:12854543-12854623 1.0000 80 chrX:11210582-11210662 1.0000 80 chrI:1280257-1280337 1.0000 80 chrIV:8762701-8762781 1.0000 80 chrX:4973031-4973111 1.0000 80 chrIII:11848461-11848541 1.0000 80 chrII:14857069-14857149 1.0000 80 chrIII:2127939-2128019 1.0000 80 chrIV:1901024-1901104 1.0000 80 chrX:5056375-5056455 1.0000 80 chrI:11664955-11665035 1.0000 80 chrX:16530679-16530759 1.0000 80 chrV:16022777-16022857 1.0000 80 chrM:3242-3322 1.0000 80 chrX:10372737-10372817 1.0000 80 chrIV:16388228-16388308 1.0000 80 chrX:7884871-7884951 1.0000 80 chrIII:9661213-9661293 1.0000 80 chrIII:13616957-13617037 1.0000 80 chrV:11933398-11933478 1.0000 80 chrIII:9081285-9081365 1.0000 80 chrI:933477-933557 1.0000 80 chrII:484562-484642 1.0000 80 chrI:14788744-14788824 1.0000 80 chrIII:7199017-7199097 1.0000 80 chrX:14016745-14016825 1.0000 80 chrIII:5872436-5872516 1.0000 80 chrV:5849994-5850074 1.0000 80 chrV:12896109-12896189 1.0000 80 chrI:3636644-3636724 1.0000 80 chrV:6022811-6022891 1.0000 80 chrIV:5528401-5528481 1.0000 80 chrI:13421155-13421235 1.0000 80 chrX:1996197-1996277 1.0000 80 chrX:13726988-13727068 1.0000 80 chrIV:7817930-7818010 1.0000 80 chrII:1134609-1134689 1.0000 80 chrV:20832673-20832753 1.0000 80 chrV:3256914-3256994 1.0000 80 chrIII:10856983-10857063 1.0000 80 chrI:1695166-1695246 1.0000 80 chrIII:13474652-13474732 1.0000 80 chrI:6280447-6280527 1.0000 80 chrV:14004008-14004088 1.0000 80 chrX:8666293-8666373 1.0000 80 chrIV:4042412-4042492 1.0000 80 chrI:4080452-4080532 1.0000 80 chrV:3688897-3688977 1.0000 80 chrI:3899455-3899535 1.0000 80 chrX:1524824-1524904 1.0000 80 chrI:3101914-3101994 1.0000 80 chrIII:7949303-7949383 1.0000 80 chrI:13040647-13040727 1.0000 80 chrII:9987013-9987093 1.0000 80 chrIII:5930805-5930885 1.0000 80 chrI:7715691-7715771 1.0000 80 chrM:10050-10130 1.0000 80 chrX:1086562-1086642 1.0000 80 chrIII:3499999-3500079 1.0000 80 chrI:11693684-11693764 1.0000 80 chrII:5836513-5836593 1.0000 80 chrI:1102231-1102311 1.0000 80 chrM:8158-8238 1.0000 80 chrM:3560-3640 1.0000 80 chrIII:3476312-3476392 1.0000 80 chrI:12481120-12481200 1.0000 80 chrIII:4947460-4947540 1.0000 80 chrX:6410409-6410489 1.0000 80 chrII:66408-66488 1.0000 80 chrII:10202438-10202518 1.0000 80 chrI:12899120-12899200 1.0000 80 chrI:14628170-14628250 1.0000 80 chrI:11137608-11137688 1.0000 80 chrI:3176588-3176668 1.0000 80 chrII:6097606-6097686 1.0000 80 chrI:9042875-9042955 1.0000 80 chrI:4941298-4941378 1.0000 80 chrV:2082035-2082115 1.0000 80 chrIII:11290705-11290785 1.0000 80 chrIV:14356313-14356393 1.0000 80 chrIV:3824893-3824973 1.0000 80 chrV:16598699-16598779 1.0000 80 chrV:975371-975451 1.0000 80 chrI:7251637-7251717 1.0000 80 chrV:8600106-8600186 1.0000 80 chrIII:4912474-4912554 1.0000 80 chrIII:5108920-5109000 1.0000 80 chrI:11132533-11132613 1.0000 80 chrIII:931568-931648 1.0000 80 chrV:20424320-20424400 1.0000 80 chrV:11133703-11133783 1.0000 80 chrI:10161974-10162054 1.0000 80 chrI:12921058-12921138 1.0000 80 chrI:4308306-4308386 1.0000 80 chrIV:9048255-9048335 1.0000 80 chrII:5594361-5594441 1.0000 80 chrX:5193581-5193661 1.0000 80 chrIV:10811602-10811682 1.0000 80 chrIV:9107638-9107718 1.0000 80 chrI:8125438-8125518 1.0000 80 chrIV:16477314-16477394 1.0000 80 chrV:7084878-7084958 1.0000 80 chrX:1064189-1064269 1.0000 80 chrIII:8144731-8144811 1.0000 80 chrX:14027035-14027115 1.0000 80 chrIV:3803409-3803489 1.0000 80 chrI:10469112-10469192 1.0000 80 chrII:6383333-6383413 1.0000 80 chrI:4224910-4224990 1.0000 80 chrX:11024879-11024959 1.0000 80 chrII:9491227-9491307 1.0000 80 chrIII:6079029-6079109 1.0000 80 chrIII:8250403-8250483 1.0000 80 chrX:9654421-9654501 1.0000 80 chrI:2706170-2706250 1.0000 80 chrI:2710648-2710728 1.0000 80 chrI:1034350-1034430 1.0000 80 chrII:10200892-10200972 1.0000 80 chrII:6734815-6734895 1.0000 80 chrIII:8761490-8761570 1.0000 80 chrX:915743-915823 1.0000 80 chrII:8137456-8137536 1.0000 80 chrIII:11091767-11091847 1.0000 80 chrIII:10064306-10064386 1.0000 80 chrV:1472636-1472716 1.0000 80 chrI:14134584-14134664 1.0000 80 chrII:4791429-4791509 1.0000 80 chrV:18808827-18808907 1.0000 80 chrX:16367184-16367264 1.0000 80 chrI:1651447-1651527 1.0000 80 chrIV:15573985-15574065 1.0000 80 chrI:4247558-4247638 1.0000 80 chrI:4958823-4958903 1.0000 80 chrM:6307-6387 1.0000 80 chrV:8658779-8658859 1.0000 80 chrI:14902882-14902962 1.0000 80 chrIV:3854737-3854817 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_hlh-8/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/hlh-8.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.268 C 0.229 G 0.231 T 0.272 Background letter frequencies (from file dataset with add-one prior applied): A 0.268 C 0.229 G 0.231 T 0.272 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF MCAKMTGK MEME-1 width = 8 sites = 144 llr = 1043 E-value = 1.1e-088 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCAKMTGK MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5:a:4::: pos.-specific C 5a:15::2 probability G 1::41:a4 matrix T :::5:a:4 bits 2.1 * * 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 ** ** Entropy 1.1 ** ** (10.4 bits) 0.8 ** ** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACATCTGT consensus C GA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAKMTGK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:975371-975451 59 2.77e-05 TCACTCAACA CCATCTGG GAGGGAGGGC chrI:11137608-11137688 18 2.77e-05 GTGGGCGGAG CCATCTGG AGTGACCGGT chrII:9987013-9987093 18 2.77e-05 CCTCCTGAAA CCATCTGT TTTGCATAAC chrI:6280447-6280527 32 2.77e-05 CCTCCCCCGA CCATCTGT CCATCTTATG chrV:6022811-6022891 18 2.77e-05 CTTATTCTAT CCATCTGT TTCTCGGTTT chrX:7884871-7884951 57 2.77e-05 AGATGTTGAG CCATCTGG TGTCAACTAC chrX:7236961-7237041 37 2.77e-05 CCGTCGAATG CCATCTGT TCCTGCTCTC chrIV:13001419-13001499 8 2.77e-05 ACCCAGA CCATCTGG CGTCGGTGCC chrIV:5970671-5970751 33 2.77e-05 ATACATTTTG CCATCTGT CCCTCCGTCA chrV:20711867-20711947 51 2.77e-05 TTATAACTAA CCATCTGT TTCGCTATCT chrX:7151885-7151965 18 2.77e-05 AAATTTCTGA CCATCTGG AAACCAGCTG chrI:9374783-9374863 67 2.77e-05 CATCATCACA CCATCTGG CGGCAC chrIV:3168793-3168873 34 2.77e-05 TAGTCACCTA CCATCTGG TAATGATCTA chrIII:4195802-4195882 54 2.77e-05 CACATGGTGC CCATCTGT CTTTTTATTT chrI:9016308-9016388 51 2.77e-05 GGCTTTCAAA CCATCTGT TTTTCATCGA chrIV:1895137-1895217 29 2.77e-05 CCTGTCCTCA CCATCTGG TGATCACAct chrI:13501065-13501145 27 2.77e-05 CACGTGGCGA CCATCTGG CACATCTGTC chrIV:5929121-5929201 39 2.77e-05 CATCTGGTGT CCATCTGT TAATGTCGCA chrI:14134584-14134664 22 8.35e-05 AGAGAGAGAC ACATCTGG TGTCATGTGT chrV:1472636-1472716 68 8.35e-05 GCACATTACA ACATCTGG CACTT chrV:16598699-16598779 3 8.35e-05 GA ACATCTGG AAGTGATGGG chrX:1086562-1086642 11 8.35e-05 ATTTATTTGC ACATCTGG ATGGTATTAT chrIII:7949303-7949383 13 8.35e-05 CCCAGCCGGA CCAGCTGG ACCACCAGGA chrIV:7817930-7818010 28 8.35e-05 TATCTCACCT ACATCTGT TCCAGAATCG chrIV:1901024-1901104 16 8.35e-05 AGAAGGAGAC ACATCTGG CATCCATCCA chrIII:6978954-6979034 58 8.35e-05 CGTCCTCACA ACATCTGG CCTTTCCTTC chrX:1053079-1053159 64 8.35e-05 CTCCTTTCCG ACATCTGT TTCAACCCG chrV:14808326-14808406 20 8.35e-05 GCAGCCACAC ACATCTGG CACTATTCCA chrI:5240763-5240843 32 8.35e-05 CATGTGTGAA ACATCTGG ACAGGATACA chrV:6470168-6470248 57 8.35e-05 GAGATTCTGC ACATCTGG AGCCCCCCGC chrI:7200991-7201071 65 8.35e-05 TTCCGACCGC ACATCTGG TATTGGTC chrV:13395531-13395611 31 8.35e-05 GTCGTAAAAG CCAGCTGT GCGCATGCGA chrX:17062404-17062484 45 8.35e-05 ATACACATCG ACATCTGG AGGATTTCTG chrV:20421868-20421948 22 8.35e-05 GCTCAGAATG ACATCTGT TTGACGGAAA chrIV:8924291-8924371 41 8.35e-05 CACATTTTGA ACATCTGG TGGGCAGACG chrIV:6995344-6995424 64 8.35e-05 TACTCACCAC ACATCTGG CAGTTATGG chrV:7826630-7826710 64 8.35e-05 GGGGCTCCCA ACATCTGG CGGCTCCAC chrIV:12685948-12686028 17 8.35e-05 AAAACTGACA ACATCTGG TGCTCAGTCC chrIV:5172153-5172233 33 8.35e-05 CACGTGCTGT CCAGCTGT GAATTCTCTT chrI:5411492-5411572 3 8.35e-05 GA ACATCTGG ACAGCAGATG chrX:11024879-11024959 7 1.43e-04 TCGTTT CCATATGT AAACGAGTAG chrIII:5108920-5109000 53 1.43e-04 AGTGTCCCGA ACAGCTGT TTGGAAACGA chrIII:9661213-9661293 54 1.43e-04 TTGATCTTCA ACAGCTGT GTCTCATCTG chrIV:16388228-16388308 68 1.43e-04 GCCAGATTGT CCATATGT GTGTT chrIII:2127939-2128019 46 1.43e-04 TTCTTCTTCA CCATATGG ACCACTTCCG chrV:16553130-16553210 65 1.43e-04 ATTTGTCGCG CCATATGT GTTCTCAG chrI:10506324-10506404 6 1.43e-04 TTCTC ACAGCTGG TCCCAATCAG chrIII:3583488-3583568 33 1.43e-04 tcggcttctt cCATATGT TCGTATGTGT chrI:14902882-14902962 52 2.09e-04 CCGAGCACAC ACATATGT GTAAGAGGAG chrX:16367184-16367264 10 2.09e-04 ATACTTGGC CCAGATGG TGAAAAAGGC chrI:12921058-12921138 45 2.09e-04 AAGGAGAGCA CCAGATGG CATGCAAACA chrV:11133703-11133783 58 2.09e-04 CTCATTACTT CCAGATGT GTGATTTTCG chrI:11132533-11132613 24 2.09e-04 TGTCTCGTGT CCAGATGT GCGAAAAGCT chrX:1524824-1524904 34 2.09e-04 GCTTTGGGCG CCAGATGT TCAAATAATG chrX:8666293-8666373 34 2.09e-04 CTGATTGTTA CCAGATGT GTGGTGGGGG chrV:14004008-14004088 63 2.09e-04 GCCGTGTAAA CCAGATGG TTCGTCCATT chrV:5849994-5850074 36 2.09e-04 TCGACCCCAA CCAGATGT GCGTGTGCTC chrX:4973031-4973111 57 2.09e-04 ATCAACGTTG CCAGATGT GTTTACCACG chrII:9667475-9667555 43 2.09e-04 ATGTGTTTCA CCAGATGT GTCGAGAGAC chrII:13193870-13193950 19 2.09e-04 CCGATTTCAA CCAGATGG ATACCACATG chrII:160932-161012 8 2.09e-04 ACGGAAA ACATATGT GCCGCACAAA chrIII:9483948-9484028 35 2.09e-04 GGGATGAGAT CCAGATGG GAAGAGGATG chrII:9265070-9265150 37 2.09e-04 ACAACTGGTG CCAGATGG CAACATTCCT chrIII:7460183-7460263 45 2.09e-04 ACTGCGGGTG CCAGATGT AGGAGGAGGT chrIII:7463326-7463406 26 2.09e-04 TCCCATCTAA CCAGATGT GTTCCTCCTG chrI:7945592-7945672 16 2.09e-04 GAGATGAAAA CCAGATGG GCGGCACATT chrII:2206200-2206280 56 2.09e-04 AAACTTATAA ACATATGG TAGTTAAGCT chrIII:5980687-5980767 65 2.09e-04 GCAATAGGTA CCAGATGT GGAGCTTT chrIV:3844149-3844229 67 2.09e-04 TCGTTTCGAA CCAGATGT TGCCAA chrV:5039699-5039779 26 2.09e-04 ACGGCGATCG ACATATGG CGGAGGCGCC chrIII:8765187-8765267 8 2.09e-04 TTCTTTC ACATATGG TGCCTGGTTC chrIV:10804133-10804213 37 2.09e-04 CACGTCGTCA CCAGATGT TCGTCATCTG chrX:11374762-11374842 49 2.09e-04 GACTGGACAG CCAGATGT TCATCCGGCG chrIV:5079066-5079146 29 2.41e-04 ACTCACATAA ACAGATGG CAGATGTTTG chrII:2687095-2687175 23 2.41e-04 CTGACATCCG ACAGATGG ATCAAATTAG chrII:11555839-11555919 41 2.41e-04 CATTTGTTCA ACAGATGG CTGCTCGGTG chrV:122913-122993 41 2.41e-04 GTGTGTACAA ACAGATGG AAAAGTGAGT chrII:11688168-11688248 2 2.41e-04 A ACAGATGG CTGGTGCGTC chrV:9283636-9283716 1 2.41e-04 . ACAGATGT GCTCCACCAC chrII:10039953-10040033 49 2.41e-04 CGGCTGTCCA ACAGATGT CGACCAGGCT chrI:4943037-4943117 8 2.41e-04 ATCGAAC ACAGATGT TATCGTCTTC chrX:14016745-14016825 28 2.54e-04 TTGGTCGTCA CCATCTGC CACAACTGCT chrIII:8761490-8761570 45 2.79e-04 CAATTTCTCA ACATCTGC CCTGTTGGTT chrM:10050-10130 70 2.79e-04 TTTTTGTATT ACATCTGC TGA chrIV:10512982-10513062 71 2.79e-04 TAGAACCAAG ACATCTGC TC chrIII:6156543-6156623 10 2.79e-04 ATCTGGTGA ACATCTGC GAAATGAATT chrIII:1372708-1372788 54 2.79e-04 CATATGCTCG CCAGCTGC TCTCTTTTAC chrIII:11454182-11454262 41 2.79e-04 ACCACCACTA ACATCTGC TCCACGAACG chrI:3899455-3899535 40 3.06e-04 TAACAACCAA ACAGCTGC CACGTCACCG chrX:11210582-11210662 46 3.06e-04 CACGGTAAAA ACAGCTGC GTGACCCATA chrIV:2136730-2136810 21 3.06e-04 GTCCCTTCCA ACAGCTGC CTGGCACCTA chrII:8499179-8499259 9 3.06e-04 TACTGACG ACAGCTGC GCCATGTGCC chrX:3711854-3711934 59 3.06e-04 TTAAATAGTT ACAGCTGC AACTAATAAT chrI:7520220-7520300 11 3.06e-04 GTCACATAGC CCATATGC TCTCAAGATG chrI:7715691-7715771 7 3.36e-04 ACATAC ACATATGC CAACCCTCCT chrII:6823345-6823425 68 3.36e-04 CAAGAAGCCG CCAGATGC CAATC chrIII:10475347-10475427 30 3.36e-04 CGTCTGTTCA CCAGATGC ACTTTTTCCC chrX:1110917-1110997 24 3.36e-04 CTCTGGCACG CCAGATGC CTACGCCTGT chrIV:15473597-15473677 61 3.36e-04 CAGACACCCT CCAGATGC TGCTCTGGGC chrIV:11713490-11713570 58 3.36e-04 GCACAACATG CCAGATGC GTGGCAGATG chrII:9491227-9491307 11 3.74e-04 AGATTACTGC CCACCTGG TGGGGTCTTT chrI:4080452-4080532 13 3.74e-04 CGGAATAAAA ACAGATGC GTTGTATTTG chrI:11664955-11665035 64 3.74e-04 CCCACCACTA CCACCTGT CATGCACAT chrIII:5930805-5930885 38 4.29e-04 ACTAAAAGAA CCACATGT TCGTTGCATC chrI:1695166-1695246 14 4.29e-04 AGACTATAGA CCACATGT GTGCACTTGT chrIII:5872436-5872516 1 4.29e-04 . CCACATGT GTTGTGTAAT chrIII:9081285-9081365 34 4.29e-04 AAGAGGCGGA CCACATGG TGACCCCAGA chrX:6151138-6151218 58 4.29e-04 CGCGTAATTA CCACATGT AGGTGTTCGA chrV:11528788-11528868 46 4.29e-04 TCATGTGGCA CCACATGG GTGCACCACA chrX:13726988-13727068 23 4.60e-04 GAAAGGGTCA ACACATGT TATTTATCAC chrII:13788996-13789076 29 4.60e-04 CCGTTTTTTC ACACATGT TTTGCGTCAT chrIV:16385244-16385324 3 4.60e-04 AA ACACATGG TATTCACAAT chrX:14027035-14027115 24 4.88e-04 TGACAGTGCA CCATGTGG TGAGCACAAT chrV:8658779-8658859 28 5.45e-04 CAATGTGCCA ACATGTGG TCGATAGTGT chrI:2706170-2706250 19 5.45e-04 TTCTTCTGAT ACATGTGT CGTATACACA chrX:9654421-9654501 44 5.45e-04 ATCGTTCAGG ACATGTGG CTTTGAGCCG chrI:1102231-1102311 51 5.45e-04 TTAAAATGAA ACATGTGT TGTTGGAAAT chrIII:7792069-7792149 44 5.45e-04 TGGCCGATTC ACATGTGT TTCTGTTTCC chrII:12660065-12660145 65 5.45e-04 CATAAAGTGA ACATGTGG TGTGGCTG chrV:20486705-20486785 48 5.45e-04 GGAGCACAAA ACATGTGT GTGTGAGTAG chrI:9848443-9848523 23 5.45e-04 TGCTAACAAC ACATGTGT GTCTACGTCT chrII:2804321-2804401 45 5.45e-04 TCGGGCTTAA ACATGTGT GCTCCAGCTT chrI:3472883-3472963 64 5.45e-04 ATACCAGAAG ACATGTGT GAGCTGCTT chrII:160729-160809 49 5.45e-04 CACCACCCAC CCAGGTGT TCGTAGATCA chrIII:6079029-6079109 67 6.11e-04 TTACAAAACG CCACCTGC TCTCTC chrIV:9107638-9107718 31 6.11e-04 ACAAACAATA GCATCTGT TGAGTGCGCA chrX:7613590-7613670 40 6.11e-04 TGCTAGCACC GCATCTGT ACCTCGTAAA chrI:1651447-1651527 15 6.47e-04 CCTGTTACTG GCAGCTGT GCCTCTTTAG chrI:3101914-3101994 31 6.47e-04 GACAGCAGCA GCAGCTGT GAAGCAGTGA chrIV:12854543-12854623 37 6.47e-04 TCTCTCACCA GCAGCTGG TCCCACAAAA chrIII:9191345-9191425 33 6.47e-04 AACACCCAGA GCAGCTGT GTCCGAATGG chrIV:8762701-8762781 41 6.92e-04 GAAGAATGGA GCATATGT TTCTAGTGAA chrX:8116506-8116586 3 6.92e-04 AC GCATATGT TTGGATCTCA chrI:12481120-12481200 29 7.34e-04 AGCGGCCGCC ACACATGC TATAACATTG chrI:14788744-14788824 57 7.34e-04 GGAGGGAACA GCAGATGG TCGTATTTTA chrIII:5183584-5183664 7 7.34e-04 ACATGC ACACATGC ACAGAAGGCG chrV:6342743-6342823 26 7.34e-04 CTGATCGAAA ACACATGC ACAAAATAAC chrI:12480909-12480989 40 7.34e-04 GCGAGCCGCC ACACATGC TATAACATTG chrI:2045083-2045163 34 7.34e-04 CTTTCACGGG GCAGATGG GCGTTTCGCC chrI:4046788-4046868 49 7.98e-04 TGGCAAGAGA GCATCTGC CATACACTCT chrV:8600106-8600186 71 8.47e-04 TTGATGAGTT CCACGTGT TG chrI:13040647-13040727 3 8.47e-04 CG GCATATGC ATTCTAATTG chrV:2082035-2082115 5 8.87e-04 CTCA ACACGTGG TGTCCTTGGT chrIII:13037051-13037131 66 8.87e-04 CATCTGGCAT ACACGTGT TTGGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAKMTGK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:975371-975451 2.8e-05 58_[+1]_14 chrI:11137608-11137688 2.8e-05 17_[+1]_55 chrII:9987013-9987093 2.8e-05 17_[+1]_55 chrI:6280447-6280527 2.8e-05 31_[+1]_41 chrV:6022811-6022891 2.8e-05 17_[+1]_55 chrX:7884871-7884951 2.8e-05 56_[+1]_16 chrX:7236961-7237041 2.8e-05 36_[+1]_36 chrIV:13001419-13001499 2.8e-05 7_[+1]_65 chrIV:5970671-5970751 2.8e-05 32_[+1]_40 chrV:20711867-20711947 2.8e-05 50_[+1]_22 chrX:7151885-7151965 2.8e-05 17_[+1]_55 chrI:9374783-9374863 2.8e-05 66_[+1]_6 chrIV:3168793-3168873 2.8e-05 33_[+1]_39 chrIII:4195802-4195882 2.8e-05 53_[+1]_19 chrI:9016308-9016388 2.8e-05 50_[+1]_22 chrIV:1895137-1895217 2.8e-05 28_[+1]_44 chrI:13501065-13501145 2.8e-05 26_[+1]_46 chrIV:5929121-5929201 2.8e-05 38_[+1]_34 chrI:14134584-14134664 8.4e-05 21_[+1]_51 chrV:1472636-1472716 8.4e-05 67_[+1]_5 chrV:16598699-16598779 8.4e-05 2_[+1]_70 chrX:1086562-1086642 8.4e-05 10_[+1]_62 chrIII:7949303-7949383 8.4e-05 12_[+1]_60 chrIV:7817930-7818010 8.4e-05 27_[+1]_45 chrIV:1901024-1901104 8.4e-05 15_[+1]_57 chrIII:6978954-6979034 8.4e-05 57_[+1]_15 chrX:1053079-1053159 8.4e-05 63_[+1]_9 chrV:14808326-14808406 8.4e-05 19_[+1]_53 chrI:5240763-5240843 8.4e-05 31_[+1]_41 chrV:6470168-6470248 8.4e-05 56_[+1]_16 chrI:7200991-7201071 8.4e-05 64_[+1]_8 chrV:13395531-13395611 8.4e-05 30_[+1]_42 chrX:17062404-17062484 8.4e-05 44_[+1]_28 chrV:20421868-20421948 8.4e-05 21_[+1]_51 chrIV:8924291-8924371 8.4e-05 40_[+1]_32 chrIV:6995344-6995424 8.4e-05 63_[+1]_9 chrV:7826630-7826710 8.4e-05 63_[+1]_9 chrIV:12685948-12686028 8.4e-05 16_[+1]_56 chrIV:5172153-5172233 8.4e-05 32_[+1]_40 chrI:5411492-5411572 8.4e-05 2_[+1]_70 chrX:11024879-11024959 0.00014 6_[+1]_66 chrIII:5108920-5109000 0.00014 52_[+1]_20 chrIII:9661213-9661293 0.00014 53_[+1]_19 chrIV:16388228-16388308 0.00014 67_[+1]_5 chrIII:2127939-2128019 0.00014 45_[+1]_27 chrV:16553130-16553210 0.00014 64_[+1]_8 chrI:10506324-10506404 0.00014 5_[+1]_67 chrIII:3583488-3583568 0.00014 32_[+1]_40 chrI:14902882-14902962 0.00021 51_[+1]_21 chrX:16367184-16367264 0.00021 9_[+1]_63 chrI:12921058-12921138 0.00021 44_[+1]_28 chrV:11133703-11133783 0.00021 57_[+1]_15 chrI:11132533-11132613 0.00021 23_[+1]_49 chrX:1524824-1524904 0.00021 33_[+1]_39 chrX:8666293-8666373 0.00021 33_[+1]_39 chrV:14004008-14004088 0.00021 62_[+1]_10 chrV:5849994-5850074 0.00021 35_[+1]_37 chrX:4973031-4973111 0.00021 56_[+1]_16 chrII:9667475-9667555 0.00021 42_[+1]_30 chrII:13193870-13193950 0.00021 18_[+1]_54 chrII:160932-161012 0.00021 7_[+1]_65 chrIII:9483948-9484028 0.00021 34_[+1]_38 chrII:9265070-9265150 0.00021 36_[+1]_36 chrIII:7460183-7460263 0.00021 44_[+1]_28 chrIII:7463326-7463406 0.00021 25_[+1]_47 chrI:7945592-7945672 0.00021 15_[+1]_57 chrII:2206200-2206280 0.00021 55_[+1]_17 chrIII:5980687-5980767 0.00021 64_[+1]_8 chrIV:3844149-3844229 0.00021 66_[+1]_6 chrV:5039699-5039779 0.00021 25_[+1]_47 chrIII:8765187-8765267 0.00021 7_[+1]_65 chrIV:10804133-10804213 0.00021 36_[+1]_36 chrX:11374762-11374842 0.00021 48_[+1]_24 chrIV:5079066-5079146 0.00024 28_[+1]_44 chrII:2687095-2687175 0.00024 22_[+1]_50 chrII:11555839-11555919 0.00024 40_[+1]_32 chrV:122913-122993 0.00024 40_[+1]_32 chrII:11688168-11688248 0.00024 1_[+1]_71 chrV:9283636-9283716 0.00024 [+1]_72 chrII:10039953-10040033 0.00024 48_[+1]_24 chrI:4943037-4943117 0.00024 7_[+1]_65 chrX:14016745-14016825 0.00025 27_[+1]_45 chrIII:8761490-8761570 0.00028 44_[+1]_28 chrM:10050-10130 0.00028 69_[+1]_3 chrIV:10512982-10513062 0.00028 70_[+1]_2 chrIII:6156543-6156623 0.00028 9_[+1]_63 chrIII:1372708-1372788 0.00028 53_[+1]_19 chrIII:11454182-11454262 0.00028 40_[+1]_32 chrI:3899455-3899535 0.00031 39_[+1]_33 chrX:11210582-11210662 0.00031 45_[+1]_27 chrIV:2136730-2136810 0.00031 20_[+1]_52 chrII:8499179-8499259 0.00031 8_[+1]_64 chrX:3711854-3711934 0.00031 58_[+1]_14 chrI:7520220-7520300 0.00031 10_[+1]_62 chrI:7715691-7715771 0.00034 6_[+1]_66 chrII:6823345-6823425 0.00034 67_[+1]_5 chrIII:10475347-10475427 0.00034 29_[+1]_43 chrX:1110917-1110997 0.00034 23_[+1]_49 chrIV:15473597-15473677 0.00034 60_[+1]_12 chrIV:11713490-11713570 0.00034 57_[+1]_15 chrII:9491227-9491307 0.00037 10_[+1]_62 chrI:4080452-4080532 0.00037 12_[+1]_60 chrI:11664955-11665035 0.00037 63_[+1]_9 chrIII:5930805-5930885 0.00043 37_[+1]_35 chrI:1695166-1695246 0.00043 13_[+1]_59 chrIII:5872436-5872516 0.00043 [+1]_72 chrIII:9081285-9081365 0.00043 33_[+1]_39 chrX:6151138-6151218 0.00043 57_[+1]_15 chrV:11528788-11528868 0.00043 45_[+1]_27 chrX:13726988-13727068 0.00046 22_[+1]_50 chrII:13788996-13789076 0.00046 28_[+1]_44 chrIV:16385244-16385324 0.00046 2_[+1]_70 chrX:14027035-14027115 0.00049 23_[+1]_49 chrV:8658779-8658859 0.00054 27_[+1]_45 chrI:2706170-2706250 0.00054 18_[+1]_54 chrX:9654421-9654501 0.00054 43_[+1]_29 chrI:1102231-1102311 0.00054 50_[+1]_22 chrIII:7792069-7792149 0.00054 43_[+1]_29 chrII:12660065-12660145 0.00054 64_[+1]_8 chrV:20486705-20486785 0.00054 47_[+1]_25 chrI:9848443-9848523 0.00054 22_[+1]_50 chrII:2804321-2804401 0.00054 44_[+1]_28 chrI:3472883-3472963 0.00054 63_[+1]_9 chrII:160729-160809 0.00054 48_[+1]_24 chrIII:6079029-6079109 0.00061 66_[+1]_6 chrIV:9107638-9107718 0.00061 30_[+1]_42 chrX:7613590-7613670 0.00061 39_[+1]_33 chrI:1651447-1651527 0.00065 14_[+1]_58 chrI:3101914-3101994 0.00065 30_[+1]_42 chrIV:12854543-12854623 0.00065 36_[+1]_36 chrIII:9191345-9191425 0.00065 32_[+1]_40 chrIV:8762701-8762781 0.00069 40_[+1]_32 chrX:8116506-8116586 0.00069 2_[+1]_70 chrI:12481120-12481200 0.00073 28_[+1]_44 chrI:14788744-14788824 0.00073 56_[+1]_16 chrIII:5183584-5183664 0.00073 6_[+1]_66 chrV:6342743-6342823 0.00073 25_[+1]_47 chrI:12480909-12480989 0.00073 39_[+1]_33 chrI:2045083-2045163 0.00073 33_[+1]_39 chrI:4046788-4046868 0.0008 48_[+1]_24 chrV:8600106-8600186 0.00085 70_[+1]_2 chrI:13040647-13040727 0.00085 2_[+1]_70 chrV:2082035-2082115 0.00089 4_[+1]_68 chrIII:13037051-13037131 0.00089 65_[+1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAKMTGK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCAKMTGK width=8 seqs=144 chrV:975371-975451 ( 59) CCATCTGG 1 chrI:11137608-11137688 ( 18) CCATCTGG 1 chrII:9987013-9987093 ( 18) CCATCTGT 1 chrI:6280447-6280527 ( 32) CCATCTGT 1 chrV:6022811-6022891 ( 18) CCATCTGT 1 chrX:7884871-7884951 ( 57) CCATCTGG 1 chrX:7236961-7237041 ( 37) CCATCTGT 1 chrIV:13001419-13001499 ( 8) CCATCTGG 1 chrIV:5970671-5970751 ( 33) CCATCTGT 1 chrV:20711867-20711947 ( 51) CCATCTGT 1 chrX:7151885-7151965 ( 18) CCATCTGG 1 chrI:9374783-9374863 ( 67) CCATCTGG 1 chrIV:3168793-3168873 ( 34) CCATCTGG 1 chrIII:4195802-4195882 ( 54) CCATCTGT 1 chrI:9016308-9016388 ( 51) CCATCTGT 1 chrIV:1895137-1895217 ( 29) CCATCTGG 1 chrI:13501065-13501145 ( 27) CCATCTGG 1 chrIV:5929121-5929201 ( 39) CCATCTGT 1 chrI:14134584-14134664 ( 22) ACATCTGG 1 chrV:1472636-1472716 ( 68) ACATCTGG 1 chrV:16598699-16598779 ( 3) ACATCTGG 1 chrX:1086562-1086642 ( 11) ACATCTGG 1 chrIII:7949303-7949383 ( 13) CCAGCTGG 1 chrIV:7817930-7818010 ( 28) ACATCTGT 1 chrIV:1901024-1901104 ( 16) ACATCTGG 1 chrIII:6978954-6979034 ( 58) ACATCTGG 1 chrX:1053079-1053159 ( 64) ACATCTGT 1 chrV:14808326-14808406 ( 20) ACATCTGG 1 chrI:5240763-5240843 ( 32) ACATCTGG 1 chrV:6470168-6470248 ( 57) ACATCTGG 1 chrI:7200991-7201071 ( 65) ACATCTGG 1 chrV:13395531-13395611 ( 31) CCAGCTGT 1 chrX:17062404-17062484 ( 45) ACATCTGG 1 chrV:20421868-20421948 ( 22) ACATCTGT 1 chrIV:8924291-8924371 ( 41) ACATCTGG 1 chrIV:6995344-6995424 ( 64) ACATCTGG 1 chrV:7826630-7826710 ( 64) ACATCTGG 1 chrIV:12685948-12686028 ( 17) ACATCTGG 1 chrIV:5172153-5172233 ( 33) CCAGCTGT 1 chrI:5411492-5411572 ( 3) ACATCTGG 1 chrX:11024879-11024959 ( 7) CCATATGT 1 chrIII:5108920-5109000 ( 53) ACAGCTGT 1 chrIII:9661213-9661293 ( 54) ACAGCTGT 1 chrIV:16388228-16388308 ( 68) CCATATGT 1 chrIII:2127939-2128019 ( 46) CCATATGG 1 chrV:16553130-16553210 ( 65) CCATATGT 1 chrI:10506324-10506404 ( 6) ACAGCTGG 1 chrIII:3583488-3583568 ( 33) CCATATGT 1 chrI:14902882-14902962 ( 52) ACATATGT 1 chrX:16367184-16367264 ( 10) CCAGATGG 1 chrI:12921058-12921138 ( 45) CCAGATGG 1 chrV:11133703-11133783 ( 58) CCAGATGT 1 chrI:11132533-11132613 ( 24) CCAGATGT 1 chrX:1524824-1524904 ( 34) CCAGATGT 1 chrX:8666293-8666373 ( 34) CCAGATGT 1 chrV:14004008-14004088 ( 63) CCAGATGG 1 chrV:5849994-5850074 ( 36) CCAGATGT 1 chrX:4973031-4973111 ( 57) CCAGATGT 1 chrII:9667475-9667555 ( 43) CCAGATGT 1 chrII:13193870-13193950 ( 19) CCAGATGG 1 chrII:160932-161012 ( 8) ACATATGT 1 chrIII:9483948-9484028 ( 35) CCAGATGG 1 chrII:9265070-9265150 ( 37) CCAGATGG 1 chrIII:7460183-7460263 ( 45) CCAGATGT 1 chrIII:7463326-7463406 ( 26) CCAGATGT 1 chrI:7945592-7945672 ( 16) CCAGATGG 1 chrII:2206200-2206280 ( 56) ACATATGG 1 chrIII:5980687-5980767 ( 65) CCAGATGT 1 chrIV:3844149-3844229 ( 67) CCAGATGT 1 chrV:5039699-5039779 ( 26) ACATATGG 1 chrIII:8765187-8765267 ( 8) ACATATGG 1 chrIV:10804133-10804213 ( 37) CCAGATGT 1 chrX:11374762-11374842 ( 49) CCAGATGT 1 chrIV:5079066-5079146 ( 29) ACAGATGG 1 chrII:2687095-2687175 ( 23) ACAGATGG 1 chrII:11555839-11555919 ( 41) ACAGATGG 1 chrV:122913-122993 ( 41) ACAGATGG 1 chrII:11688168-11688248 ( 2) ACAGATGG 1 chrV:9283636-9283716 ( 1) ACAGATGT 1 chrII:10039953-10040033 ( 49) ACAGATGT 1 chrI:4943037-4943117 ( 8) ACAGATGT 1 chrX:14016745-14016825 ( 28) CCATCTGC 1 chrIII:8761490-8761570 ( 45) ACATCTGC 1 chrM:10050-10130 ( 70) ACATCTGC 1 chrIV:10512982-10513062 ( 71) ACATCTGC 1 chrIII:6156543-6156623 ( 10) ACATCTGC 1 chrIII:1372708-1372788 ( 54) CCAGCTGC 1 chrIII:11454182-11454262 ( 41) ACATCTGC 1 chrI:3899455-3899535 ( 40) ACAGCTGC 1 chrX:11210582-11210662 ( 46) ACAGCTGC 1 chrIV:2136730-2136810 ( 21) ACAGCTGC 1 chrII:8499179-8499259 ( 9) ACAGCTGC 1 chrX:3711854-3711934 ( 59) ACAGCTGC 1 chrI:7520220-7520300 ( 11) CCATATGC 1 chrI:7715691-7715771 ( 7) ACATATGC 1 chrII:6823345-6823425 ( 68) CCAGATGC 1 chrIII:10475347-10475427 ( 30) CCAGATGC 1 chrX:1110917-1110997 ( 24) CCAGATGC 1 chrIV:15473597-15473677 ( 61) CCAGATGC 1 chrIV:11713490-11713570 ( 58) CCAGATGC 1 chrII:9491227-9491307 ( 11) CCACCTGG 1 chrI:4080452-4080532 ( 13) ACAGATGC 1 chrI:11664955-11665035 ( 64) CCACCTGT 1 chrIII:5930805-5930885 ( 38) CCACATGT 1 chrI:1695166-1695246 ( 14) CCACATGT 1 chrIII:5872436-5872516 ( 1) CCACATGT 1 chrIII:9081285-9081365 ( 34) CCACATGG 1 chrX:6151138-6151218 ( 58) CCACATGT 1 chrV:11528788-11528868 ( 46) CCACATGG 1 chrX:13726988-13727068 ( 23) ACACATGT 1 chrII:13788996-13789076 ( 29) ACACATGT 1 chrIV:16385244-16385324 ( 3) ACACATGG 1 chrX:14027035-14027115 ( 24) CCATGTGG 1 chrV:8658779-8658859 ( 28) ACATGTGG 1 chrI:2706170-2706250 ( 19) ACATGTGT 1 chrX:9654421-9654501 ( 44) ACATGTGG 1 chrI:1102231-1102311 ( 51) ACATGTGT 1 chrIII:7792069-7792149 ( 44) ACATGTGT 1 chrII:12660065-12660145 ( 65) ACATGTGG 1 chrV:20486705-20486785 ( 48) ACATGTGT 1 chrI:9848443-9848523 ( 23) ACATGTGT 1 chrII:2804321-2804401 ( 45) ACATGTGT 1 chrI:3472883-3472963 ( 64) ACATGTGT 1 chrII:160729-160809 ( 49) CCAGGTGT 1 chrIII:6079029-6079109 ( 67) CCACCTGC 1 chrIV:9107638-9107718 ( 31) GCATCTGT 1 chrX:7613590-7613670 ( 40) GCATCTGT 1 chrI:1651447-1651527 ( 15) GCAGCTGT 1 chrI:3101914-3101994 ( 31) GCAGCTGT 1 chrIV:12854543-12854623 ( 37) GCAGCTGG 1 chrIII:9191345-9191425 ( 33) GCAGCTGT 1 chrIV:8762701-8762781 ( 41) GCATATGT 1 chrX:8116506-8116586 ( 3) GCATATGT 1 chrI:12481120-12481200 ( 29) ACACATGC 1 chrI:14788744-14788824 ( 57) GCAGATGG 1 chrIII:5183584-5183664 ( 7) ACACATGC 1 chrV:6342743-6342823 ( 26) ACACATGC 1 chrI:12480909-12480989 ( 40) ACACATGC 1 chrI:2045083-2045163 ( 34) GCAGATGG 1 chrI:4046788-4046868 ( 49) GCATCTGC 1 chrV:8600106-8600186 ( 71) CCACGTGT 1 chrI:13040647-13040727 ( 3) GCATATGC 1 chrV:2082035-2082115 ( 5) ACACGTGG 1 chrIII:13037051-13037131 ( 66) ACACGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAKMTGK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.7738 E= 1.1e-088 77 100 -147 -1381 -1381 212 -1381 -1381 190 -1381 -1381 -1381 -1381 -80 67 88 73 98 -115 -1381 -1381 -1381 -1381 188 -1381 -1381 211 -1381 -1381 -29 73 66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAKMTGK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 144 E= 1.1e-088 0.458333 0.458333 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.131944 0.368056 0.500000 0.444444 0.451389 0.104167 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.187500 0.381944 0.430556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAKMTGK MEME-1 regular expression -------------------------------------------------------------------------------- [AC]CA[TG][CA]TG[TG] -------------------------------------------------------------------------------- Time 6.70 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTYYYTC MEME-2 width = 8 sites = 52 llr = 411 E-value = 1.3e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTYYYTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a2654:7 probability G :::::::: matrix T a:8456a3 bits 2.1 * 1.9 ** * 1.7 ** * 1.5 ** * Relative 1.3 *** ** Entropy 1.1 ******** (11.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCCTTC consensus TTC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYYYTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:12481120-12481200 47 1.51e-05 TATAACATTG TCTCCTTC CCCTAGTGCA chrIII:5183584-5183664 46 1.51e-05 TCGCACTCGT TCTCCTTC CCTCTCATTC chrIV:17108360-17108440 41 1.51e-05 TGCCGTCAGA TCTCCTTC TCGCAGATCC chrI:12480909-12480989 58 1.51e-05 TATAACATTG TCTCCTTC CCCTAGTGCA chrI:9374783-9374863 29 1.51e-05 CCATCTCTCT TCTCCTTC ACAAACGCCC chrV:9283636-9283716 56 1.51e-05 TCCTCCTGAC TCTCCTTC TCAATCTCCA chrI:1034350-1034430 23 2.77e-05 AAATTTCAAA TCTCCCTC GCGCGGGTTT chrX:1064189-1064269 2 2.77e-05 C TCTCCCTC TCTCTGCTCC chrIV:14356313-14356393 35 2.77e-05 TTGAGCTCCT TCTCCCTC TGTCTCTCTC chrIV:10804133-10804213 4 2.77e-05 TTG TCTCCCTC TCTCTAAACC chrI:12921058-12921138 64 4.56e-05 ATGCAAACAT TCTCTTTC TCTTCTTCT chrV:20424320-20424400 51 4.56e-05 tctctctgtc tctctttc AAAAGAACGA chrX:7151679-7151759 16 4.56e-05 GTCTCCTTTC TCTCTTTC TTTCGATCCA chrI:1695166-1695246 46 6.07e-05 tttctttctc tctctctc tctttatcca chrX:1996197-1996277 68 6.07e-05 ACCTATATCC TCTCTCTC CATCC chrI:11203358-11203438 22 6.07e-05 TGTGCTTCTC TCTCTCTC TCTGTCTCTG chrIV:12685948-12686028 39 6.07e-05 CAGTCCCCTC TCTCTCTC TCTGTCTTTC chrIV:1895137-1895217 46 6.07e-05 GTGATCACAc tctctctc tctctctaac chrI:2706170-2706250 7 7.85e-05 CCTTCT TCTTCTTC TGATACATGT chrIV:1901024-1901104 72 7.85e-05 acaccGTCcc tcttcttc g chrIII:2127939-2128019 37 7.85e-05 ACCATATGCT TCTTCTTC ACCATATGGA chrIV:6995344-6995424 35 7.85e-05 CTCGCATGCT TCTTCTTC TGTTGGGCAA chrX:915743-915823 15 9.36e-05 CTAGGTTTCC TCTTCCTC CTTTTCACCC chrX:1053079-1053159 49 9.36e-05 ATTTCCCATG TCTTCCTC CTTTCCGACA chrV:20711867-20711947 22 9.36e-05 ctccgattct tcttcctc ttctcATCAA chrII:9987013-9987093 1 1.15e-04 . TCTTTTTC CTCCTGAAAC chrII:6823345-6823425 37 1.15e-04 TAACTCTGTG TCTTTTTC TCTGGCGATC chrI:6238364-6238444 46 1.15e-04 AGTCGGCAAC TCTTTTTC CATTCCATTC chrIII:5108920-5109000 16 1.51e-04 AGAAACTGTT TCTTTCTC TGCCGTCTCT chrIII:5930805-5930885 13 1.51e-04 TCAACTAATT TCTCCTTT CTTCTCTACT chrI:933477-933557 32 1.51e-04 TCACCAATTA TCTTTCTC TCTGtggctt chrIII:6978954-6979034 1 1.78e-04 . TCTCCCTT CAATTGTTCA chrII:11688168-11688248 21 1.78e-04 TGGTGCGTCC TCCCCTTC TTCAATTGGG chrIV:3854737-3854817 68 2.00e-04 GTGTGCTTCT TCTCTTTT CTCTT chrII:2804321-2804401 72 2.00e-04 TCCCTCCATT TCTCTTTT C chrIII:1372708-1372788 62 2.00e-04 CGCCAGCTGC TCTCTTTT ACGAGTTTAC chrX:11024879-11024959 72 2.43e-04 TCTCATTCCA TCTCTCTT T chrI:12675354-12675434 48 2.43e-04 AACACTCAAA TCCCTTTC CACAACGCTC chrIII:3583488-3583568 6 2.43e-04 tatta tctctctt ctcttctatt chrM:3560-3640 46 2.64e-04 GTTTATTATT TCTTCTTT GTAGAGGAGG chrIV:7817930-7818010 70 2.64e-04 TGAGCTCTTT TCTTCTTT TCC chrIII:9483948-9484028 65 2.64e-04 TGGATAGAGT TCTTCTTT ACTCACAA chrIII:8765187-8765267 64 2.64e-04 TAACGTGCAC TCTTCTTT CCACAACAA chrI:13040647-13040727 61 2.77e-04 CCCCTCTCTA TCCCTCTC TCTGTGAAGC chrIV:5172153-5172233 54 2.77e-04 TTCTCTTGAA TCCCTCTC CAACACATAC chrI:4943037-4943117 39 2.77e-04 CTGGGCTTCA TCCCTCTC TCTGCAAGAG chrV:3677378-3677458 49 3.10e-04 GCCAGAGTGG TCCTCTTC CGCTGTGTGT chrIV:3168793-3168873 1 3.35e-04 . TCTTTTTT TTTTGATTGC chrI:6280447-6280527 18 3.48e-04 TAACAGACAC TCCTCCTC CCCCGACCAT chrX:14016745-14016825 55 3.87e-04 TTCCGTCGGG TCTTTCTT CGTCAGAGAC chrII:13788996-13789076 51 4.17e-04 CGTCATTTCC TCCCCTTT TTTCTTTCAA chrV:16553130-16553210 15 4.17e-04 TTTTTGCAGA TCCCCTTT TTGCAGATCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYYYTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:12481120-12481200 1.5e-05 46_[+2]_26 chrIII:5183584-5183664 1.5e-05 45_[+2]_27 chrIV:17108360-17108440 1.5e-05 40_[+2]_32 chrI:12480909-12480989 1.5e-05 57_[+2]_15 chrI:9374783-9374863 1.5e-05 28_[+2]_44 chrV:9283636-9283716 1.5e-05 55_[+2]_17 chrI:1034350-1034430 2.8e-05 22_[+2]_50 chrX:1064189-1064269 2.8e-05 1_[+2]_71 chrIV:14356313-14356393 2.8e-05 34_[+2]_38 chrIV:10804133-10804213 2.8e-05 3_[+2]_69 chrI:12921058-12921138 4.6e-05 63_[+2]_9 chrV:20424320-20424400 4.6e-05 50_[+2]_22 chrX:7151679-7151759 4.6e-05 15_[+2]_57 chrI:1695166-1695246 6.1e-05 45_[+2]_27 chrX:1996197-1996277 6.1e-05 67_[+2]_5 chrI:11203358-11203438 6.1e-05 21_[+2]_51 chrIV:12685948-12686028 6.1e-05 38_[+2]_34 chrIV:1895137-1895217 6.1e-05 45_[+2]_27 chrI:2706170-2706250 7.9e-05 6_[+2]_66 chrIV:1901024-1901104 7.9e-05 71_[+2]_1 chrIII:2127939-2128019 7.9e-05 36_[+2]_36 chrIV:6995344-6995424 7.9e-05 34_[+2]_38 chrX:915743-915823 9.4e-05 14_[+2]_58 chrX:1053079-1053159 9.4e-05 48_[+2]_24 chrV:20711867-20711947 9.4e-05 21_[+2]_51 chrII:9987013-9987093 0.00011 [+2]_72 chrII:6823345-6823425 0.00011 36_[+2]_36 chrI:6238364-6238444 0.00011 45_[+2]_27 chrIII:5108920-5109000 0.00015 15_[+2]_57 chrIII:5930805-5930885 0.00015 12_[+2]_60 chrI:933477-933557 0.00015 31_[+2]_41 chrIII:6978954-6979034 0.00018 [+2]_72 chrII:11688168-11688248 0.00018 20_[+2]_52 chrIV:3854737-3854817 0.0002 67_[+2]_5 chrII:2804321-2804401 0.0002 71_[+2]_1 chrIII:1372708-1372788 0.0002 61_[+2]_11 chrX:11024879-11024959 0.00024 71_[+2]_1 chrI:12675354-12675434 0.00024 47_[+2]_25 chrIII:3583488-3583568 0.00024 5_[+2]_67 chrM:3560-3640 0.00026 45_[+2]_27 chrIV:7817930-7818010 0.00026 69_[+2]_3 chrIII:9483948-9484028 0.00026 64_[+2]_8 chrIII:8765187-8765267 0.00026 63_[+2]_9 chrI:13040647-13040727 0.00028 60_[+2]_12 chrIV:5172153-5172233 0.00028 53_[+2]_19 chrI:4943037-4943117 0.00028 38_[+2]_34 chrV:3677378-3677458 0.00031 48_[+2]_24 chrIV:3168793-3168873 0.00034 [+2]_72 chrI:6280447-6280527 0.00035 17_[+2]_55 chrX:14016745-14016825 0.00039 54_[+2]_18 chrII:13788996-13789076 0.00042 50_[+2]_22 chrV:16553130-16553210 0.00042 14_[+2]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYYYTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTYYYTC width=8 seqs=52 chrI:12481120-12481200 ( 47) TCTCCTTC 1 chrIII:5183584-5183664 ( 46) TCTCCTTC 1 chrIV:17108360-17108440 ( 41) TCTCCTTC 1 chrI:12480909-12480989 ( 58) TCTCCTTC 1 chrI:9374783-9374863 ( 29) TCTCCTTC 1 chrV:9283636-9283716 ( 56) TCTCCTTC 1 chrI:1034350-1034430 ( 23) TCTCCCTC 1 chrX:1064189-1064269 ( 2) TCTCCCTC 1 chrIV:14356313-14356393 ( 35) TCTCCCTC 1 chrIV:10804133-10804213 ( 4) TCTCCCTC 1 chrI:12921058-12921138 ( 64) TCTCTTTC 1 chrV:20424320-20424400 ( 51) TCTCTTTC 1 chrX:7151679-7151759 ( 16) TCTCTTTC 1 chrI:1695166-1695246 ( 46) TCTCTCTC 1 chrX:1996197-1996277 ( 68) TCTCTCTC 1 chrI:11203358-11203438 ( 22) TCTCTCTC 1 chrIV:12685948-12686028 ( 39) TCTCTCTC 1 chrIV:1895137-1895217 ( 46) TCTCTCTC 1 chrI:2706170-2706250 ( 7) TCTTCTTC 1 chrIV:1901024-1901104 ( 72) TCTTCTTC 1 chrIII:2127939-2128019 ( 37) TCTTCTTC 1 chrIV:6995344-6995424 ( 35) TCTTCTTC 1 chrX:915743-915823 ( 15) TCTTCCTC 1 chrX:1053079-1053159 ( 49) TCTTCCTC 1 chrV:20711867-20711947 ( 22) TCTTCCTC 1 chrII:9987013-9987093 ( 1) TCTTTTTC 1 chrII:6823345-6823425 ( 37) TCTTTTTC 1 chrI:6238364-6238444 ( 46) TCTTTTTC 1 chrIII:5108920-5109000 ( 16) TCTTTCTC 1 chrIII:5930805-5930885 ( 13) TCTCCTTT 1 chrI:933477-933557 ( 32) TCTTTCTC 1 chrIII:6978954-6979034 ( 1) TCTCCCTT 1 chrII:11688168-11688248 ( 21) TCCCCTTC 1 chrIV:3854737-3854817 ( 68) TCTCTTTT 1 chrII:2804321-2804401 ( 72) TCTCTTTT 1 chrIII:1372708-1372788 ( 62) TCTCTTTT 1 chrX:11024879-11024959 ( 72) TCTCTCTT 1 chrI:12675354-12675434 ( 48) TCCCTTTC 1 chrIII:3583488-3583568 ( 6) TCTCTCTT 1 chrM:3560-3640 ( 46) TCTTCTTT 1 chrIV:7817930-7818010 ( 70) TCTTCTTT 1 chrIII:9483948-9484028 ( 65) TCTTCTTT 1 chrIII:8765187-8765267 ( 64) TCTTCTTT 1 chrI:13040647-13040727 ( 61) TCCCTCTC 1 chrIV:5172153-5172233 ( 54) TCCCTCTC 1 chrI:4943037-4943117 ( 39) TCCCTCTC 1 chrV:3677378-3677458 ( 49) TCCTCTTC 1 chrIV:3168793-3168873 ( 1) TCTTTTTT 1 chrI:6280447-6280527 ( 18) TCCTCCTC 1 chrX:14016745-14016825 ( 55) TCTTTCTT 1 chrII:13788996-13789076 ( 51) TCCCCTTT 1 chrV:16553130-16553210 ( 15) TCCCCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYYYTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5697 E= 1.3e-008 -1234 -1234 -1234 188 -1234 212 -1234 -1234 -1234 -41 -1234 161 -1234 142 -1234 50 -1234 123 -1234 76 -1234 88 -1234 109 -1234 -1234 -1234 188 -1234 163 -1234 9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYYYTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.3e-008 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.173077 0.000000 0.826923 0.000000 0.615385 0.000000 0.384615 0.000000 0.538462 0.000000 0.461538 0.000000 0.423077 0.000000 0.576923 0.000000 0.000000 0.000000 1.000000 0.000000 0.711538 0.000000 0.288462 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYYYTC MEME-2 regular expression -------------------------------------------------------------------------------- TCT[CT][CT][TC]T[CT] -------------------------------------------------------------------------------- Time 10.25 secs. ******************************************************************************** ******************************************************************************** MOTIF AGARRRAG MEME-3 width = 8 sites = 46 llr = 360 E-value = 3.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGARRRAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8:a453a3 pos.-specific C :::::::: probability G :a:657:7 matrix T 2::::::: bits 2.1 * 1.9 ** 1.7 ** * 1.5 ** * Relative 1.3 *** * Entropy 1.1 ******** (11.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGAG consensus AGA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARRRAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:15573985-15574065 47 2.73e-05 GGTTGgagag agagagag agtgaagaga chrI:14134584-14134664 12 2.73e-05 CTAAGCAAAG AGAGAGAG ACACATCTGG chrX:5193581-5193661 30 2.73e-05 agggagatat agagggag agcgggagag chrIII:931568-931648 33 2.73e-05 gtgggaagcc agagagag taaaatatgg chrIV:3824893-3824973 46 2.73e-05 TGTGTgaggg agagagag agaagagaga chrI:9042875-9042955 1 2.73e-05 . AGAGGGAG GAAAAGAAAT chrI:14628170-14628250 32 2.73e-05 agaaattgag agagagag agaagctaga chrIV:5528401-5528481 73 2.73e-05 AACAAGAGGA AGAGAGAG chrV:19897721-19897801 51 2.73e-05 TTTGGAGCAC AGAGAGAG CACAACAGGT chrIV:5079066-5079146 8 2.73e-05 AAGGGAT AGAGAGAG GACACTCACA chrI:12921058-12921138 33 5.91e-05 GAAAAGGGGA AGAAGGAG AGCACCAGAT chrIV:16388228-16388308 48 5.91e-05 TCTGGCCGCC AGAAGGAG GTGCCAGATT chrIV:1901024-1901104 6 5.91e-05 GAAGA AGAAGGAG ACACATCTGG chrV:7824315-7824395 61 5.91e-05 AGAAAATAGA AGAAAGAG AACAGATGAG chrV:8658779-8658859 53 9.08e-05 TGTAAGCTAG AGAGAAAG TGAGAATAAA chrX:13726988-13727068 10 9.08e-05 GAGATGTGA AGAGAAAG GGTCAACACA chrII:2804321-2804401 20 9.08e-05 AAGACGGGAG AGAGAAAG TGCTCCATCG chrV:122913-122993 62 9.08e-05 AGTGAGTGGC AGAGGAAG ACCGGTTTTT chrX:8117986-8118066 31 9.08e-05 ggagtacggt agaggaag atgcaagacg chrI:11693684-11693764 51 1.23e-04 GCAGAGATGA AGAGGGAA AGGGAGGAGA chrV:12896109-12896189 61 1.59e-04 GCACACACAA AGAAAAAG GAGCGCCTTC chrV:7740946-7741026 6 1.59e-04 CGAAG AGAAAAAG AGAACGAACA chrIII:9191345-9191425 62 1.59e-04 GCAAAAACGA AGAAGAAG AGATGCAAGA chrV:7826630-7826710 9 1.59e-04 gaagatga agaagaag CGCTCAGTGA chrII:10039953-10040033 30 1.59e-04 CGAGAGATGG AGAAGAAG ACGGCTGTCC chrIV:16477314-16477394 6 1.96e-04 TCTGG AGAAGGAA ATTGAGCAAT chrV:11933398-11933478 36 1.96e-04 CACAGTTTCA AGAAAGAA TTTTGTACTT chrX:16530679-16530759 28 1.96e-04 ATGAAAAAGT AGAAAGAA ACGAGCTTCA chrIII:5563881-5563961 7 1.96e-04 ggaata agaaggaa gaGATATCTC chrIII:11093644-11093724 50 1.96e-04 CTCACAGGTC AGAAGGAA TCCAAAAATC chrI:5411492-5411572 46 1.96e-04 AGAAGCCTTT AGAAGGAA TTGCGAGAAT chrI:1651447-1651527 43 2.61e-04 TCCTAAAGAA TGAGAGAG TAGACGGAGA chrI:8125438-8125518 37 2.61e-04 ATAGCATCCG AGAGAAAA TGCATTCGGG chrI:11137608-11137688 35 2.61e-04 GAGTGACCGG TGAGAGAG TGTGGAGACG chrIII:13474652-13474732 52 2.61e-04 GAAAACTGTT AGAGGAAA TTCATGGAAA chrII:484562-484642 5 2.61e-04 GTAT AGAGAAAA CTGTAAATTT chrIII:13616957-13617037 32 2.61e-04 CGGAAATCAA AGAGAAAA GTAGGCTTCT chrII:2687095-2687175 5 2.61e-04 AAAG TGAGGGAG CTGACATCCG chrII:134091-134171 39 2.61e-04 GCAGCAGACG AGAGGAAA GACGACGACG chrII:12660065-12660145 33 2.61e-04 TGTGTAAAAT TGAGAGAG CAGTGCGAGA chrI:10469112-10469192 42 3.36e-04 CGTATCTTCT AGAAGAAA ATTTCAAAAA chrII:10202438-10202518 52 3.36e-04 AGGAATAGTG TGAAAGAG TGAGAGAATT chrI:7715691-7715771 39 3.36e-04 CAAGCAGATC TGAAGGAG GTGTCAACGG chrII:9987013-9987093 73 4.00e-04 ATTGGAAAAA TGAGAGAA chrV:20424320-20424400 68 4.28e-04 cAAAAGAACG AGAGAGTG TGATA chrV:3256914-3256994 65 4.28e-04 ATTAAGGCCT AGAGGGTG ATGAACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARRRAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:15573985-15574065 2.7e-05 46_[+3]_26 chrI:14134584-14134664 2.7e-05 11_[+3]_61 chrX:5193581-5193661 2.7e-05 29_[+3]_43 chrIII:931568-931648 2.7e-05 32_[+3]_40 chrIV:3824893-3824973 2.7e-05 45_[+3]_27 chrI:9042875-9042955 2.7e-05 [+3]_72 chrI:14628170-14628250 2.7e-05 31_[+3]_41 chrIV:5528401-5528481 2.7e-05 72_[+3] chrV:19897721-19897801 2.7e-05 50_[+3]_22 chrIV:5079066-5079146 2.7e-05 7_[+3]_65 chrI:12921058-12921138 5.9e-05 32_[+3]_40 chrIV:16388228-16388308 5.9e-05 47_[+3]_25 chrIV:1901024-1901104 5.9e-05 5_[+3]_67 chrV:7824315-7824395 5.9e-05 60_[+3]_12 chrV:8658779-8658859 9.1e-05 52_[+3]_20 chrX:13726988-13727068 9.1e-05 9_[+3]_63 chrII:2804321-2804401 9.1e-05 19_[+3]_53 chrV:122913-122993 9.1e-05 61_[+3]_11 chrX:8117986-8118066 9.1e-05 30_[+3]_42 chrI:11693684-11693764 0.00012 50_[+3]_22 chrV:12896109-12896189 0.00016 60_[+3]_12 chrV:7740946-7741026 0.00016 5_[+3]_67 chrIII:9191345-9191425 0.00016 61_[+3]_11 chrV:7826630-7826710 0.00016 8_[+3]_64 chrII:10039953-10040033 0.00016 29_[+3]_43 chrIV:16477314-16477394 0.0002 5_[+3]_67 chrV:11933398-11933478 0.0002 35_[+3]_37 chrX:16530679-16530759 0.0002 27_[+3]_45 chrIII:5563881-5563961 0.0002 6_[+3]_66 chrIII:11093644-11093724 0.0002 49_[+3]_23 chrI:5411492-5411572 0.0002 45_[+3]_27 chrI:1651447-1651527 0.00026 42_[+3]_30 chrI:8125438-8125518 0.00026 36_[+3]_36 chrI:11137608-11137688 0.00026 34_[+3]_38 chrIII:13474652-13474732 0.00026 51_[+3]_21 chrII:484562-484642 0.00026 4_[+3]_68 chrIII:13616957-13617037 0.00026 31_[+3]_41 chrII:2687095-2687175 0.00026 4_[+3]_68 chrII:134091-134171 0.00026 38_[+3]_34 chrII:12660065-12660145 0.00026 32_[+3]_40 chrI:10469112-10469192 0.00034 41_[+3]_31 chrII:10202438-10202518 0.00034 51_[+3]_21 chrI:7715691-7715771 0.00034 38_[+3]_34 chrII:9987013-9987093 0.0004 72_[+3] chrV:20424320-20424400 0.00043 67_[+3]_5 chrV:3256914-3256994 0.00043 64_[+3]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARRRAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGARRRAG width=8 seqs=46 chrIV:15573985-15574065 ( 47) AGAGAGAG 1 chrI:14134584-14134664 ( 12) AGAGAGAG 1 chrX:5193581-5193661 ( 30) AGAGGGAG 1 chrIII:931568-931648 ( 33) AGAGAGAG 1 chrIV:3824893-3824973 ( 46) AGAGAGAG 1 chrI:9042875-9042955 ( 1) AGAGGGAG 1 chrI:14628170-14628250 ( 32) AGAGAGAG 1 chrIV:5528401-5528481 ( 73) AGAGAGAG 1 chrV:19897721-19897801 ( 51) AGAGAGAG 1 chrIV:5079066-5079146 ( 8) AGAGAGAG 1 chrI:12921058-12921138 ( 33) AGAAGGAG 1 chrIV:16388228-16388308 ( 48) AGAAGGAG 1 chrIV:1901024-1901104 ( 6) AGAAGGAG 1 chrV:7824315-7824395 ( 61) AGAAAGAG 1 chrV:8658779-8658859 ( 53) AGAGAAAG 1 chrX:13726988-13727068 ( 10) AGAGAAAG 1 chrII:2804321-2804401 ( 20) AGAGAAAG 1 chrV:122913-122993 ( 62) AGAGGAAG 1 chrX:8117986-8118066 ( 31) AGAGGAAG 1 chrI:11693684-11693764 ( 51) AGAGGGAA 1 chrV:12896109-12896189 ( 61) AGAAAAAG 1 chrV:7740946-7741026 ( 6) AGAAAAAG 1 chrIII:9191345-9191425 ( 62) AGAAGAAG 1 chrV:7826630-7826710 ( 9) AGAAGAAG 1 chrII:10039953-10040033 ( 30) AGAAGAAG 1 chrIV:16477314-16477394 ( 6) AGAAGGAA 1 chrV:11933398-11933478 ( 36) AGAAAGAA 1 chrX:16530679-16530759 ( 28) AGAAAGAA 1 chrIII:5563881-5563961 ( 7) AGAAGGAA 1 chrIII:11093644-11093724 ( 50) AGAAGGAA 1 chrI:5411492-5411572 ( 46) AGAAGGAA 1 chrI:1651447-1651527 ( 43) TGAGAGAG 1 chrI:8125438-8125518 ( 37) AGAGAAAA 1 chrI:11137608-11137688 ( 35) TGAGAGAG 1 chrIII:13474652-13474732 ( 52) AGAGGAAA 1 chrII:484562-484642 ( 5) AGAGAAAA 1 chrIII:13616957-13617037 ( 32) AGAGAAAA 1 chrII:2687095-2687175 ( 5) TGAGGGAG 1 chrII:134091-134171 ( 39) AGAGGAAA 1 chrII:12660065-12660145 ( 33) TGAGAGAG 1 chrI:10469112-10469192 ( 42) AGAAGAAA 1 chrII:10202438-10202518 ( 52) TGAAAGAG 1 chrI:7715691-7715771 ( 39) TGAAGGAG 1 chrII:9987013-9987093 ( 73) TGAGAGAA 1 chrV:20424320-20424400 ( 68) AGAGAGTG 1 chrV:3256914-3256994 ( 65) AGAGGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARRRAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1909 E= 3.4e-002 166 -1217 -1217 -84 -1217 -1217 211 -1217 190 -1217 -1217 -1217 55 -1217 140 -1217 102 -1217 98 -1217 38 -1217 150 -1217 184 -1217 -1217 -264 18 -1217 159 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARRRAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 3.4e-002 0.847826 0.000000 0.000000 0.152174 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.391304 0.000000 0.608696 0.000000 0.543478 0.000000 0.456522 0.000000 0.347826 0.000000 0.652174 0.000000 0.956522 0.000000 0.000000 0.043478 0.304348 0.000000 0.695652 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARRRAG MEME-3 regular expression -------------------------------------------------------------------------------- AGA[GA][AG][GA]A[GA] -------------------------------------------------------------------------------- Time 13.68 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCCCCAC MEME-4 width = 8 sites = 8 llr = 85 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCCCCAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C ::a8aa:9 probability G aa:::::1 matrix T :::3:::: bits 2.1 *** ** 1.9 *** *** 1.7 *** *** 1.5 *** **** Relative 1.3 ******** Entropy 1.1 ******** (15.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCCCCAC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCCAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:4958823-4958903 27 9.01e-06 TCACGTTTGA GGCCCCAC GAAAAGGGGA chrI:3176588-3176668 31 9.01e-06 CGGCCACCAC GGCCCCAC GAAAATGGAA chrI:12899120-12899200 15 9.01e-06 AAAAAAAAGA GGCCCCAC GAAAAGGGGA chrIII:3499999-3500079 41 9.01e-06 AAATTCGAGA GGCCCCAC GGAAAGAGGA chrIII:11848461-11848541 53 9.01e-06 ACAGAAAGGA GGCCCCAC CACGGAAAAG chrI:2487853-2487933 62 1.97e-05 ATAAGACCGA GGCTCCAC GAAATTCAAG chrV:7826630-7826710 73 1.97e-05 AACATCTGGC GGCTCCAC chrX:10372737-10372817 45 2.88e-05 AGACGGCAGG GGCCCCAG GAAGGGGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCCAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:4958823-4958903 9e-06 26_[+4]_46 chrI:3176588-3176668 9e-06 30_[+4]_42 chrI:12899120-12899200 9e-06 14_[+4]_58 chrIII:3499999-3500079 9e-06 40_[+4]_32 chrIII:11848461-11848541 9e-06 52_[+4]_20 chrI:2487853-2487933 2e-05 61_[+4]_11 chrV:7826630-7826710 2e-05 72_[+4] chrX:10372737-10372817 2.9e-05 44_[+4]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCCAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCCCCAC width=8 seqs=8 chrI:4958823-4958903 ( 27) GGCCCCAC 1 chrI:3176588-3176668 ( 31) GGCCCCAC 1 chrI:12899120-12899200 ( 15) GGCCCCAC 1 chrIII:3499999-3500079 ( 41) GGCCCCAC 1 chrIII:11848461-11848541 ( 53) GGCCCCAC 1 chrI:2487853-2487933 ( 62) GGCTCCAC 1 chrV:7826630-7826710 ( 73) GGCTCCAC 1 chrX:10372737-10372817 ( 45) GGCCCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCCAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8922 E= 1.8e+003 -965 -965 211 -965 -965 -965 211 -965 -965 212 -965 -965 -965 171 -965 -12 -965 212 -965 -965 -965 212 -965 -965 190 -965 -965 -965 -965 193 -88 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCCAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.8e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCCAC MEME-4 regular expression -------------------------------------------------------------------------------- GGC[CT]CCAC -------------------------------------------------------------------------------- Time 17.01 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGACGCA MEME-5 width = 8 sites = 6 llr = 68 E-value = 4.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGACGCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:a:::a pos.-specific C ::::a:a: probability G a:a::a:: matrix T :::::::: bits 2.1 * * *** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGACGCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:3824893-3824973 60 1.24e-05 agagagaaga gagacgca gagagGGTGC chrI:9042875-9042955 50 1.24e-05 GCATACTGCA GAGACGCA GATTAAGAAC chrI:11137608-11137688 47 1.24e-05 AGAGAGTGTG GAGACGCA GAGATGCGCA chrI:11693684-11693764 36 1.24e-05 GGGGTGGTGA GAGACGCA GAGATGAAGA chrIV:8762701-8762781 15 1.24e-05 GCGCAGTTGA GAGACGCA GACAATGTGA chrI:5020219-5020299 42 1.24e-05 AGAGGGCGAA GAGACGCA GAATGATATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:3824893-3824973 1.2e-05 59_[+5]_13 chrI:9042875-9042955 1.2e-05 49_[+5]_23 chrI:11137608-11137688 1.2e-05 46_[+5]_26 chrI:11693684-11693764 1.2e-05 35_[+5]_37 chrIV:8762701-8762781 1.2e-05 14_[+5]_58 chrI:5020219-5020299 1.2e-05 41_[+5]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGACGCA width=8 seqs=6 chrIV:3824893-3824973 ( 60) GAGACGCA 1 chrI:9042875-9042955 ( 50) GAGACGCA 1 chrI:11137608-11137688 ( 47) GAGACGCA 1 chrI:11693684-11693764 ( 36) GAGACGCA 1 chrIV:8762701-8762781 ( 15) GAGACGCA 1 chrI:5020219-5020299 ( 42) GAGACGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.229 E= 4.6e+003 -923 -923 211 -923 190 -923 -923 -923 -923 -923 211 -923 190 -923 -923 -923 -923 212 -923 -923 -923 -923 211 -923 -923 212 -923 -923 190 -923 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.6e+003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-5 regular expression -------------------------------------------------------------------------------- GAGACGCA -------------------------------------------------------------------------------- Time 20.39 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:16385244-16385324 2.25e-01 80 chrI:4943037-4943117 1.94e-02 80 chrX:8117986-8118066 4.96e-02 30_[+3(9.08e-05)]_42 chrI:5411492-5411572 3.59e-02 2_[+1(8.35e-05)]_70 chrIV:5929121-5929201 2.79e-03 27_[+1(8.35e-05)]_3_[+1(2.77e-05)]_\ 34 chrIV:5172153-5172233 1.39e-02 32_[+1(8.35e-05)]_40 chrX:11374762-11374842 6.89e-02 80 chrIV:11713490-11713570 2.87e-01 80 chrIV:10804133-10804213 3.68e-04 3_[+2(2.77e-05)]_69 chrI:13501065-13501145 3.56e-02 26_[+1(2.77e-05)]_1_[+1(8.35e-05)]_\ 37 chrIV:1895137-1895217 3.22e-03 28_[+1(2.77e-05)]_9_[+2(6.07e-05)]_\ 27 chrII:160729-160809 5.68e-01 80 chrII:10039953-10040033 4.96e-03 80 chrIII:8765187-8765267 8.50e-02 80 chrIII:11454182-11454262 9.00e-02 80 chrV:5039699-5039779 3.13e-03 80 chrI:7520220-7520300 1.82e-01 80 chrIII:1372708-1372788 7.03e-02 80 chrIV:12685948-12686028 2.05e-03 16_[+1(8.35e-05)]_12_[+2(6.07e-05)]_\ 36 chrV:9283636-9283716 1.41e-03 55_[+2(1.51e-05)]_17 chrX:7151679-7151759 3.35e-02 15_[+2(4.56e-05)]_57 chrIV:3844149-3844229 2.06e-01 80 chrIII:6156543-6156623 2.74e-01 80 chrIII:5980687-5980767 1.33e-01 80 chrI:9016308-9016388 3.40e-02 50_[+1(2.77e-05)]_22 chrII:2206200-2206280 1.20e-01 80 chrV:7826630-7826710 4.83e-05 63_[+1(8.35e-05)]_1_[+4(1.97e-05)] chrIV:6995344-6995424 1.74e-02 34_[+2(7.85e-05)]_21_[+1(8.35e-05)]_\ 9 chrIV:8924291-8924371 4.77e-02 40_[+1(8.35e-05)]_32 chrIII:4195802-4195882 1.33e-02 53_[+1(2.77e-05)]_19 chrI:6238364-6238444 1.57e-01 80 chrV:11528788-11528868 1.42e-02 41_[+4(5.92e-05)]_31 chrI:5020219-5020299 8.36e-03 41_[+5(1.24e-05)]_31 chrI:7945592-7945672 5.34e-03 80 chrIV:3168793-3168873 2.33e-02 33_[+1(2.77e-05)]_39 chrII:11688168-11688248 4.68e-02 80 chrV:20421868-20421948 1.10e-02 21_[+1(8.35e-05)]_51 chrI:9374783-9374863 4.21e-04 28_[+2(1.51e-05)]_30_[+1(2.77e-05)]_\ 6 chrX:7151885-7151965 1.72e-02 17_[+1(2.77e-05)]_3_[+1(8.35e-05)]_\ 44 chrV:7824315-7824395 2.79e-02 60_[+3(5.91e-05)]_12 chrIII:7463326-7463406 7.30e-02 80 chrIV:15473597-15473677 1.44e-01 80 chrI:3472883-3472963 1.91e-01 80 chrIII:7460183-7460263 1.40e-01 80 chrX:1110917-1110997 2.78e-01 80 chrX:8116506-8116586 3.21e-01 80 chrV:122913-122993 8.57e-03 61_[+3(9.08e-05)]_11 chrIV:10512982-10513062 5.73e-02 80 chrIII:3583488-3583568 3.03e-02 80 chrII:2804321-2804401 5.79e-04 19_[+3(9.08e-05)]_53 chrX:17062404-17062484 1.74e-01 44_[+1(8.35e-05)]_28 chrI:10506324-10506404 4.47e-03 80 chrII:9265070-9265150 2.50e-02 80 chrIII:5976191-5976271 9.18e-01 80 chrIII:9483948-9484028 2.67e-03 80 chrI:9848443-9848523 3.79e-01 80 chrX:6151138-6151218 4.73e-01 80 chrV:20486705-20486785 4.85e-03 80 chrI:11203358-11203438 1.60e-01 17_[+2(6.07e-05)]_31_[+2(4.56e-05)]_\ 16 chrV:20711867-20711947 9.44e-03 18_[+2(7.85e-05)]_24_[+1(2.77e-05)]_\ 22 chrII:12660065-12660145 9.53e-03 80 chrV:13395531-13395611 2.18e-01 30_[+1(8.35e-05)]_42 chrI:2045083-2045163 4.19e-01 80 chrII:160932-161012 1.27e-02 80 chrIV:13549460-13549540 1.00e+00 80 chrI:4947935-4948015 4.95e-01 80 chrI:7200991-7201071 2.37e-02 64_[+1(8.35e-05)]_8 chrX:3711854-3711934 1.01e-02 2_[+4(3.96e-05)]_70 chrX:17040391-17040471 8.21e-01 80 chrX:8118186-8118266 8.42e-01 80 chrV:6470168-6470248 2.37e-02 56_[+1(8.35e-05)]_16 chrII:8499179-8499259 7.68e-02 80 chrIII:11093644-11093724 4.62e-01 80 chrI:5240763-5240843 4.52e-02 31_[+1(8.35e-05)]_41 chrIII:7792069-7792149 9.70e-02 80 chrII:13193870-13193950 6.70e-02 80 chrIV:7942208-7942288 9.90e-01 80 chrI:2487853-2487933 1.13e-01 61_[+4(1.97e-05)]_11 chrV:3677378-3677458 1.30e-01 80 chrII:134091-134171 1.74e-01 80 chrI:12675354-12675434 8.01e-02 80 chrV:16553130-16553210 6.17e-02 80 chrIV:2136730-2136810 2.89e-01 80 chrX:7613590-7613670 2.70e-01 80 chrIII:10475347-10475427 5.99e-02 80 chrIII:9808276-9808356 9.90e-01 80 chrII:11555839-11555919 5.93e-02 80 chrIV:1108211-1108291 3.41e-01 80 chrM:180-260 3.68e-01 80 chrII:6823345-6823425 1.97e-02 80 chrII:2687095-2687175 7.16e-02 80 chrI:12480909-12480989 4.40e-04 57_[+2(1.51e-05)]_15 chrII:13788996-13789076 1.68e-01 80 chrIII:4905485-4905565 8.05e-01 80 chrV:6342743-6342823 2.03e-01 80 chrIV:1687357-1687437 6.01e-01 80 chrIII:13037051-13037131 7.51e-01 80 chrV:14808326-14808406 2.13e-02 19_[+1(8.35e-05)]_53 chrIV:5079066-5079146 1.86e-03 7_[+3(2.73e-05)]_65 chrIV:17108360-17108440 2.19e-02 40_[+2(1.51e-05)]_32 chrIII:5563881-5563961 1.06e-01 80 chrI:4046788-4046868 1.03e-01 80 chrX:1053079-1053159 7.50e-03 48_[+2(9.36e-05)]_7_[+1(8.35e-05)]_\ 9 chrIV:5970671-5970751 5.83e-02 32_[+1(2.77e-05)]_40 chrI:9550822-9550902 4.19e-01 80 chrV:19897721-19897801 1.95e-02 50_[+3(2.73e-05)]_22 chrIV:13001419-13001499 7.06e-03 7_[+1(2.77e-05)]_65 chrIII:5183584-5183664 7.60e-03 45_[+2(1.51e-05)]_27 chrIII:9191345-9191425 8.99e-03 80 chrX:7236961-7237041 1.03e-01 36_[+1(2.77e-05)]_36 chrII:9667475-9667555 2.16e-01 80 chrV:7740946-7741026 1.36e-01 80 chrIII:6978954-6979034 8.10e-03 57_[+1(8.35e-05)]_15 chrIV:12854543-12854623 4.76e-02 80 chrX:11210582-11210662 2.35e-01 80 chrI:1280257-1280337 1.35e-01 80 chrIV:8762701-8762781 5.08e-03 14_[+5(1.24e-05)]_58 chrX:4973031-4973111 2.64e-01 80 chrIII:11848461-11848541 7.76e-03 36_[+4(9.01e-06)]_8_[+4(9.01e-06)]_\ 20 chrII:14857069-14857149 7.18e-01 80 chrIII:2127939-2128019 2.28e-02 36_[+2(7.85e-05)]_36 chrIV:1901024-1901104 1.80e-05 5_[+3(5.91e-05)]_2_[+1(8.35e-05)]_\ 48_[+2(7.85e-05)]_1 chrX:5056375-5056455 5.92e-01 80 chrI:11664955-11665035 4.59e-03 80 chrX:16530679-16530759 9.47e-02 80 chrV:16022777-16022857 2.07e-01 80 chrM:3242-3322 9.05e-01 80 chrX:10372737-10372817 6.69e-03 44_[+4(2.88e-05)]_28 chrIV:16388228-16388308 7.82e-03 47_[+3(5.91e-05)]_25 chrX:7884871-7884951 1.31e-02 56_[+1(2.77e-05)]_16 chrIII:9661213-9661293 1.24e-01 80 chrIII:13616957-13617037 4.81e-02 80 chrV:11933398-11933478 2.30e-01 80 chrIII:9081285-9081365 1.68e-02 80 chrI:933477-933557 9.86e-02 80 chrII:484562-484642 2.95e-01 80 chrI:14788744-14788824 2.64e-01 80 chrIII:7199017-7199097 8.52e-01 80 chrX:14016745-14016825 1.69e-02 80 chrIII:5872436-5872516 1.68e-01 80 chrV:5849994-5850074 6.96e-02 80 chrV:12896109-12896189 7.95e-02 80 chrI:3636644-3636724 2.80e-01 80 chrV:6022811-6022891 1.64e-02 17_[+1(2.77e-05)]_55 chrIV:5528401-5528481 9.07e-02 72_[+3(2.73e-05)] chrI:13421155-13421235 9.44e-01 80 chrX:1996197-1996277 7.89e-03 67_[+2(6.07e-05)]_5 chrX:13726988-13727068 5.58e-03 9_[+3(9.08e-05)]_63 chrIV:7817930-7818010 2.03e-02 27_[+1(8.35e-05)]_45 chrII:1134609-1134689 3.01e-01 80 chrV:20832673-20832753 7.51e-01 80 chrV:3256914-3256994 5.38e-01 80 chrIII:10856983-10857063 8.18e-01 80 chrI:1695166-1695246 2.85e-02 41_[+2(6.07e-05)]_31 chrIII:13474652-13474732 2.60e-01 80 chrI:6280447-6280527 1.00e-02 31_[+1(2.77e-05)]_41 chrV:14004008-14004088 8.58e-02 80 chrX:8666293-8666373 1.14e-01 80 chrIV:4042412-4042492 4.86e-01 80 chrI:4080452-4080532 1.59e-01 80 chrV:3688897-3688977 1.64e-01 80 chrI:3899455-3899535 4.84e-01 80 chrX:1524824-1524904 2.08e-02 80 chrI:3101914-3101994 2.38e-01 80 chrIII:7949303-7949383 2.81e-01 12_[+1(8.35e-05)]_60 chrI:13040647-13040727 1.13e-01 80 chrII:9987013-9987093 7.59e-04 17_[+1(2.77e-05)]_55 chrIII:5930805-5930885 2.63e-02 80 chrI:7715691-7715771 5.86e-02 80 chrM:10050-10130 2.74e-01 80 chrX:1086562-1086642 1.24e-01 10_[+1(8.35e-05)]_62 chrIII:3499999-3500079 4.50e-03 40_[+4(9.01e-06)]_32 chrI:11693684-11693764 4.01e-03 35_[+5(1.24e-05)]_37 chrII:5836513-5836593 9.94e-01 80 chrI:1102231-1102311 3.54e-02 80 chrM:8158-8238 8.88e-01 80 chrM:3560-3640 3.16e-01 80 chrIII:3476312-3476392 2.55e-01 80 chrI:12481120-12481200 3.21e-03 46_[+2(1.51e-05)]_26 chrIII:4947460-4947540 6.35e-01 80 chrX:6410409-6410489 5.17e-01 80 chrII:66408-66488 6.12e-01 80 chrII:10202438-10202518 6.76e-02 80 chrI:12899120-12899200 2.30e-02 14_[+4(9.01e-06)]_58 chrI:14628170-14628250 7.36e-02 29_[+3(2.73e-05)]_43 chrI:11137608-11137688 9.93e-05 17_[+1(2.77e-05)]_21_[+5(1.24e-05)]_\ 26 chrI:3176588-3176668 2.03e-02 30_[+4(9.01e-06)]_42 chrII:6097606-6097686 7.58e-01 80 chrI:9042875-9042955 2.83e-03 [+3(2.73e-05)]_41_[+5(1.24e-05)]_23 chrI:4941298-4941378 3.53e-01 80 chrV:2082035-2082115 3.60e-01 80 chrIII:11290705-11290785 6.14e-01 80 chrIV:14356313-14356393 4.88e-02 34_[+2(2.77e-05)]_2_[+2(6.07e-05)]_\ 28 chrIV:3824893-3824973 1.20e-03 45_[+3(2.73e-05)]_6_[+5(1.24e-05)]_\ 13 chrV:16598699-16598779 3.18e-01 2_[+1(8.35e-05)]_20_[+1(8.35e-05)]_\ 42 chrV:975371-975451 1.68e-02 58_[+1(2.77e-05)]_14 chrI:7251637-7251717 3.87e-01 80 chrV:8600106-8600186 4.15e-01 80 chrIII:4912474-4912554 9.88e-01 80 chrIII:5108920-5109000 2.14e-02 80 chrI:11132533-11132613 7.90e-02 80 chrIII:931568-931648 2.52e-02 32_[+3(2.73e-05)]_40 chrV:20424320-20424400 6.51e-03 50_[+2(4.56e-05)]_22 chrV:11133703-11133783 2.66e-01 80 chrI:10161974-10162054 8.44e-01 80 chrI:12921058-12921138 2.38e-04 32_[+3(5.91e-05)]_23_[+2(4.56e-05)]_\ [+2(7.85e-05)]_1 chrI:4308306-4308386 2.36e-01 80 chrIV:9048255-9048335 4.75e-01 80 chrII:5594361-5594441 5.91e-01 80 chrX:5193581-5193661 4.74e-02 29_[+3(2.73e-05)]_43 chrIV:10811602-10811682 2.90e-01 80 chrIV:9107638-9107718 5.51e-01 80 chrI:8125438-8125518 2.28e-01 80 chrIV:16477314-16477394 7.62e-02 80 chrV:7084878-7084958 7.33e-02 80 chrX:1064189-1064269 1.07e-02 1_[+2(2.77e-05)]_71 chrIII:8144731-8144811 9.59e-01 80 chrX:14027035-14027115 2.78e-01 80 chrIV:3803409-3803489 1.47e-01 80 chrI:10469112-10469192 3.06e-01 80 chrII:6383333-6383413 3.98e-01 80 chrI:4224910-4224990 7.60e-01 80 chrX:11024879-11024959 2.03e-02 80 chrII:9491227-9491307 2.45e-01 80 chrIII:6079029-6079109 2.05e-01 80 chrIII:8250403-8250483 7.77e-01 80 chrX:9654421-9654501 3.30e-01 80 chrI:2706170-2706250 4.61e-02 3_[+2(7.85e-05)]_69 chrI:2710648-2710728 7.80e-01 80 chrI:1034350-1034430 9.86e-02 22_[+2(2.77e-05)]_50 chrII:10200892-10200972 1.67e-01 80 chrII:6734815-6734895 4.62e-01 80 chrIII:8761490-8761570 3.95e-01 80 chrX:915743-915823 3.60e-01 14_[+2(9.36e-05)]_58 chrII:8137456-8137536 2.09e-01 80 chrIII:11091767-11091847 8.46e-01 80 chrIII:10064306-10064386 6.71e-01 80 chrV:1472636-1472716 4.04e-02 67_[+1(8.35e-05)]_5 chrI:14134584-14134664 3.46e-04 9_[+3(2.73e-05)]_4_[+1(8.35e-05)]_\ 51 chrII:4791429-4791509 7.97e-01 80 chrV:18808827-18808907 2.10e-01 80 chrX:16367184-16367264 4.90e-02 80 chrI:1651447-1651527 2.08e-02 80 chrIV:15573985-15574065 5.91e-02 42_[+3(2.73e-05)]_30 chrI:4247558-4247638 3.69e-01 80 chrI:4958823-4958903 2.00e-02 26_[+4(9.01e-06)]_46 chrM:6307-6387 8.06e-01 80 chrV:8658779-8658859 5.59e-02 52_[+3(9.08e-05)]_20 chrI:14902882-14902962 6.90e-02 80 chrIV:3854737-3854817 1.73e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************