******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/hlh-6.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:12715948-12716028 1.0000 80 chrII:12727940-12728020 1.0000 80 chrII:12767587-12767667 1.0000 80 chrII:12764639-12764719 1.0000 80 chrI:3921550-3921630 1.0000 80 chrX:13470060-13470140 1.0000 80 chrII:12824566-12824646 1.0000 80 chrII:8568416-8568496 1.0000 80 chrV:116114-116194 1.0000 80 chrII:4141412-4141492 1.0000 80 chrX:7536948-7537028 1.0000 80 chrIV:4656240-4656320 1.0000 80 chrIV:4264761-4264841 1.0000 80 chrII:12718206-12718286 1.0000 80 chrI:3356754-3356834 1.0000 80 chrII:10704108-10704188 1.0000 80 chrI:11771175-11771255 1.0000 80 chrV:17812324-17812404 1.0000 80 chrIII:1930876-1930956 1.0000 80 chrX:16318404-16318484 1.0000 80 chrI:6352797-6352877 1.0000 80 chrX:13510460-13510540 1.0000 80 chrIII:13048103-13048183 1.0000 80 chrII:13316732-13316812 1.0000 80 chrII:12828695-12828775 1.0000 80 chrX:5518497-5518577 1.0000 80 chrI:6844619-6844699 1.0000 80 chrIII:6380168-6380248 1.0000 80 chrI:7709171-7709251 1.0000 80 chrI:2305986-2306066 1.0000 80 chrIV:325875-325955 1.0000 80 chrX:457609-457689 1.0000 80 chrII:1229168-1229248 1.0000 80 chrV:11449650-11449730 1.0000 80 chrII:4344481-4344561 1.0000 80 chrI:12739380-12739460 1.0000 80 chrIII:7656633-7656713 1.0000 80 chrI:3399574-3399654 1.0000 80 chrI:384882-384962 1.0000 80 chrIV:13006854-13006934 1.0000 80 chrII:384944-385024 1.0000 80 chrX:1602701-1602781 1.0000 80 chrIV:10869103-10869183 1.0000 80 chrII:10705499-10705579 1.0000 80 chrIV:3686438-3686518 1.0000 80 chrI:13399801-13399881 1.0000 80 chrI:2781254-2781334 1.0000 80 chrV:9628665-9628745 1.0000 80 chrIII:9349689-9349769 1.0000 80 chrX:11384810-11384890 1.0000 80 chrII:6710822-6710902 1.0000 80 chrX:12823251-12823331 1.0000 80 chrV:7106858-7106938 1.0000 80 chrV:5319604-5319684 1.0000 80 chrIV:13023107-13023187 1.0000 80 chrX:1517679-1517759 1.0000 80 chrV:17151529-17151609 1.0000 80 chrX:7994590-7994670 1.0000 80 chrII:15008784-15008864 1.0000 80 chrX:7562753-7562833 1.0000 80 chrX:12655529-12655609 1.0000 80 chrI:12167326-12167406 1.0000 80 chrII:12348869-12348949 1.0000 80 chrX:10078202-10078282 1.0000 80 chrII:2985627-2985707 1.0000 80 chrI:12621744-12621824 1.0000 80 chrIII:4010300-4010380 1.0000 80 chrX:9494923-9495003 1.0000 80 chrX:8996920-8997000 1.0000 80 chrIV:1769232-1769312 1.0000 80 chrII:551466-551546 1.0000 80 chrX:1081995-1082075 1.0000 80 chrX:6151307-6151387 1.0000 80 chrI:5084823-5084903 1.0000 80 chrV:8620358-8620438 1.0000 80 chrI:2888907-2888987 1.0000 80 chrIII:12576110-12576190 1.0000 80 chrV:4667238-4667318 1.0000 80 chrIV:7727261-7727341 1.0000 80 chrX:11248285-11248365 1.0000 80 chrII:1105408-1105488 1.0000 80 chrV:165851-165931 1.0000 80 chrX:17369709-17369789 1.0000 80 chrII:2737083-2737163 1.0000 80 chrI:12340729-12340809 1.0000 80 chrIII:12165508-12165588 1.0000 80 chrV:16553045-16553125 1.0000 80 chrV:12353691-12353771 1.0000 80 chrX:14027035-14027115 1.0000 80 chrIII:5954025-5954105 1.0000 80 chrX:5056379-5056459 1.0000 80 chrI:4976240-4976320 1.0000 80 chrIII:2750497-2750577 1.0000 80 chrV:9964509-9964589 1.0000 80 chrI:3138083-3138163 1.0000 80 chrIV:4403933-4404013 1.0000 80 chrIV:135555-135635 1.0000 80 chrI:2767387-2767467 1.0000 80 chrII:12789537-12789617 1.0000 80 chrII:12688203-12688283 1.0000 80 chrX:6134656-6134736 1.0000 80 chrX:6807658-6807738 1.0000 80 chrX:3226923-3227003 1.0000 80 chrX:5077941-5078021 1.0000 80 chrV:1001285-1001365 1.0000 80 chrV:5284755-5284835 1.0000 80 chrII:2273866-2273946 1.0000 80 chrII:4907321-4907401 1.0000 80 chrIV:7098694-7098774 1.0000 80 chrI:6577228-6577308 1.0000 80 chrI:11560232-11560312 1.0000 80 chrIII:9112652-9112732 1.0000 80 chrI:6153720-6153800 1.0000 80 chrIII:11702226-11702306 1.0000 80 chrV:9422914-9422994 1.0000 80 chrV:17548705-17548785 1.0000 80 chrIII:9700400-9700480 1.0000 80 chrX:3824637-3824717 1.0000 80 chrII:12644734-12644814 1.0000 80 chrX:9737807-9737887 1.0000 80 chrX:7651228-7651308 1.0000 80 chrIV:3604267-3604347 1.0000 80 chrII:3108255-3108335 1.0000 80 chrII:7810986-7811066 1.0000 80 chrX:12692016-12692096 1.0000 80 chrIII:3984316-3984396 1.0000 80 chrI:11609198-11609278 1.0000 80 chrI:9855484-9855564 1.0000 80 chrV:4181935-4182015 1.0000 80 chrIII:2560867-2560947 1.0000 80 chrX:16204449-16204529 1.0000 80 chrIII:6537351-6537431 1.0000 80 chrII:11015979-11016059 1.0000 80 chrI:14267468-14267548 1.0000 80 chrIV:12836379-12836459 1.0000 80 chrX:12405973-12406053 1.0000 80 chrII:11443359-11443439 1.0000 80 chrIII:95095-95175 1.0000 80 chrII:9065190-9065270 1.0000 80 chrI:2299629-2299709 1.0000 80 chrV:12510086-12510166 1.0000 80 chrX:7214958-7215038 1.0000 80 chrIV:7790611-7790691 1.0000 80 chrII:4586452-4586532 1.0000 80 chrII:2785803-2785883 1.0000 80 chrI:6283585-6283665 1.0000 80 chrIV:13030112-13030192 1.0000 80 chrI:933476-933556 1.0000 80 chrIII:3499994-3500074 1.0000 80 chrIII:5136329-5136409 1.0000 80 chrIV:13089916-13089996 1.0000 80 chrX:8292721-8292801 1.0000 80 chrIII:11466985-11467065 1.0000 80 chrIV:17183159-17183239 1.0000 80 chrV:8785673-8785753 1.0000 80 chrX:17315057-17315137 1.0000 80 chrII:12968818-12968898 1.0000 80 chrII:12806001-12806081 1.0000 80 chrI:11670236-11670316 1.0000 80 chrV:2800813-2800893 1.0000 80 chrIV:1687227-1687307 1.0000 80 chrIII:4666884-4666964 1.0000 80 chrIII:10857003-10857083 1.0000 80 chrIV:9269143-9269223 1.0000 80 chrX:16415992-16416072 1.0000 80 chrII:15256028-15256108 1.0000 80 chrX:16602566-16602646 1.0000 80 chrX:9941527-9941607 1.0000 80 chrIII:13713961-13714041 1.0000 80 chrIV:15938609-15938689 1.0000 80 chrX:1120381-1120461 1.0000 80 chrIII:10891346-10891426 1.0000 80 chrI:13817543-13817623 1.0000 80 chrX:8919453-8919533 1.0000 80 chrIII:7659586-7659666 1.0000 80 chrX:11257264-11257344 1.0000 80 chrIV:1107398-1107478 1.0000 80 chrIII:10094695-10094775 1.0000 80 chrIV:8079939-8080019 1.0000 80 chrI:10469120-10469200 1.0000 80 chrIV:17099202-17099282 1.0000 80 chrI:11203495-11203575 1.0000 80 chrI:2728822-2728902 1.0000 80 chrV:15553982-15554062 1.0000 80 chrI:14543545-14543625 1.0000 80 chrII:5933225-5933305 1.0000 80 chrIII:931564-931644 1.0000 80 chrV:9625824-9625904 1.0000 80 chrIII:5769875-5769955 1.0000 80 chrIII:11917280-11917360 1.0000 80 chrI:12166045-12166125 1.0000 80 chrII:3641793-3641873 1.0000 80 chrIII:4947491-4947571 1.0000 80 chrX:3706520-3706600 1.0000 80 chrII:4634116-4634196 1.0000 80 chrIV:12319099-12319179 1.0000 80 chrV:14686628-14686708 1.0000 80 chrV:7822731-7822811 1.0000 80 chrX:8566183-8566263 1.0000 80 chrX:2901216-2901296 1.0000 80 chrV:6830263-6830343 1.0000 80 chrV:19661547-19661627 1.0000 80 chrV:19591014-19591094 1.0000 80 chrIV:8627428-8627508 1.0000 80 chrIV:11524667-11524747 1.0000 80 chrX:9637151-9637231 1.0000 80 chrII:12789762-12789842 1.0000 80 chrX:4616919-4616999 1.0000 80 chrII:14248272-14248352 1.0000 80 chrII:8128817-8128897 1.0000 80 chrV:447137-447217 1.0000 80 chrII:4143553-4143633 1.0000 80 chrI:4941413-4941493 1.0000 80 chrII:14034600-14034680 1.0000 80 chrV:15505246-15505326 1.0000 80 chrII:12111252-12111332 1.0000 80 chrX:11154832-11154912 1.0000 80 chrIII:11093625-11093705 1.0000 80 chrX:4966848-4966928 1.0000 80 chrI:11524273-11524353 1.0000 80 chrIII:6551503-6551583 1.0000 80 chrII:12797393-12797473 1.0000 80 chrII:1238062-1238142 1.0000 80 chrI:13285139-13285219 1.0000 80 chrI:14863625-14863705 1.0000 80 chrV:13159352-13159432 1.0000 80 chrIV:3476777-3476857 1.0000 80 chrX:5209754-5209834 1.0000 80 chrIII:11758909-11758989 1.0000 80 chrII:5336131-5336211 1.0000 80 chrX:2598906-2598986 1.0000 80 chrX:8556828-8556908 1.0000 80 chrV:6880780-6880860 1.0000 80 chrII:4870107-4870187 1.0000 80 chrIII:11706103-11706183 1.0000 80 chrV:12330603-12330683 1.0000 80 chrX:11210589-11210669 1.0000 80 chrI:7202534-7202614 1.0000 80 chrX:8156077-8156157 1.0000 80 chrI:14612843-14612923 1.0000 80 chrX:2375080-2375160 1.0000 80 chrV:4860594-4860674 1.0000 80 chrV:19148640-19148720 1.0000 80 chrIII:6013150-6013230 1.0000 80 chrIV:4243920-4244000 1.0000 80 chrI:6136572-6136652 1.0000 80 chrII:9025690-9025770 1.0000 80 chrII:13278595-13278675 1.0000 80 chrIV:16388429-16388509 1.0000 80 chrII:15020398-15020478 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_hlh-6/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/hlh-6.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.217 C 0.282 G 0.265 T 0.236 Background letter frequencies (from file dataset with add-one prior applied): A 0.217 C 0.282 G 0.265 T 0.236 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGTGSTCC MEME-1 width = 8 sites = 33 llr = 277 E-value = 1.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTGSTCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :2:::::: pos.-specific C :21:4:aa probability G a5:a6::: matrix T :19::a:: bits 2.2 2.0 * * * 1.8 * * *** 1.5 * ** *** Relative 1.3 * ** *** Entropy 1.1 * ** *** (12.1 bits) 0.9 * ****** 0.7 * ****** 0.4 * ****** 0.2 ******** 0.0 -------- Multilevel GGTGGTCC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGSTCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:4243920-4244000 48 2.18e-05 AGGTGGTCCT GGTGGTCC CTTTGGTCCC chrIII:11706103-11706183 55 2.18e-05 TGGGGCTCCT GGTGGTCC TTGTGGGCAT chrII:4870107-4870187 55 2.18e-05 TGGTGGTCCT GGTGGTCC CTTTGGTCCT chrIV:9269143-9269223 70 2.18e-05 CCGTTTTTTG GGTGGTCC GTT chrIV:13089916-13089996 61 2.18e-05 CTCGACACCT GGTGGTCC ATCATGTCCA chrIII:5954025-5954105 73 2.18e-05 TCCGTGTCCT GGTGGTCC chrII:1105408-1105488 20 2.18e-05 GGCCGGTCCT GGTGGTCC GGCTGGTCCT chrII:6710822-6710902 66 2.18e-05 CTTAAGTCCT GGTGGTCC TGGTGGC chrIV:325875-325955 62 2.18e-05 CGATGGTCCT GGTGGTCC AGCTGGGCAG chrIV:4656240-4656320 41 2.18e-05 CGCTGGTCCA GGTGGTCC AGGACGTCCC chrX:7536948-7537028 54 2.18e-05 ATCATCTCCT GGTGGTCC TTTGATTCCC chrI:13817543-13817623 22 4.51e-05 GGCGGAGCAG GGTGCTCC ATGCTACGTG chrI:6844619-6844699 14 4.51e-05 AGGACTTGGA GGTGCTCC AGGAGCCAAG chrI:384882-384962 26 6.30e-05 TGGGACATCA GATGGTCC AGATGCATCC chrIV:17183159-17183239 38 8.62e-05 GACTGGTCCG GCTGGTCC TGGAGCTCCC chrII:11015979-11016059 17 8.62e-05 GTCTGGTCCA GCTGGtcc tggggctcct chrX:13510460-13510540 62 8.62e-05 tgctggtcca gctggtcc atctggtcct chrIII:11758909-11758989 53 1.25e-04 ACCTCTTCCA GATGCTCC TTCAACATCC chrX:4966848-4966928 6 1.25e-04 CTGGA GATGCTCC CGCGTCACAC chrX:8566183-8566263 19 1.25e-04 GTGGCGCCGT GTTGGTCC GTGCCCAATG chrI:13399801-13399881 28 1.25e-04 AATGTATTCG GTTGGTCC GCAGCTAGAC chrV:11449650-11449730 48 1.25e-04 TGGCTGTCCT GATGCTCC GTCTTGACCT chrIV:4264761-4264841 43 1.25e-04 GCCTGGAGGT GATGCTCC ACCCGGTGAG chrII:8568416-8568496 29 1.25e-04 TGCAGATCCA GATGCTCC TGGGAATCCT chrI:13285139-13285219 40 1.49e-04 ttctggagct gctgctcc tgctgcaggt chrV:9625824-9625904 31 1.49e-04 ACCAGTCATG GCTGCTCC AGCTCCACTT chrX:16602566-16602646 19 1.49e-04 TGATCCACGA GCTGCTCC TTCGCCTGTC chrII:9025690-9025770 69 1.70e-04 CATTCCACTA GTTGCTCC CTTT chrV:16553045-16553125 20 1.70e-04 TCCCCGTTTC GTTGCTCC CCTTTTCGTA chrI:14267468-14267548 54 1.96e-04 GGCACGGCCT GGCGGTCC GGAGGGCACG chrII:13316732-13316812 19 1.96e-04 CCCACATCCG GGCGGTCC GTGAACAATA chrV:17548705-17548785 7 2.24e-04 TCCCAC GGCGCTCC CAGGCTCCCA chrI:6352797-6352877 66 2.65e-04 GGGCTTCTTC GGAGGTCC TGAATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGSTCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:4243920-4244000 2.2e-05 47_[+1]_25 chrIII:11706103-11706183 2.2e-05 54_[+1]_18 chrII:4870107-4870187 2.2e-05 54_[+1]_18 chrIV:9269143-9269223 2.2e-05 69_[+1]_3 chrIV:13089916-13089996 2.2e-05 60_[+1]_12 chrIII:5954025-5954105 2.2e-05 72_[+1] chrII:1105408-1105488 2.2e-05 19_[+1]_53 chrII:6710822-6710902 2.2e-05 65_[+1]_7 chrIV:325875-325955 2.2e-05 61_[+1]_11 chrIV:4656240-4656320 2.2e-05 40_[+1]_32 chrX:7536948-7537028 2.2e-05 53_[+1]_19 chrI:13817543-13817623 4.5e-05 21_[+1]_51 chrI:6844619-6844699 4.5e-05 13_[+1]_59 chrI:384882-384962 6.3e-05 25_[+1]_47 chrIV:17183159-17183239 8.6e-05 37_[+1]_35 chrII:11015979-11016059 8.6e-05 16_[+1]_56 chrX:13510460-13510540 8.6e-05 61_[+1]_11 chrIII:11758909-11758989 0.00012 52_[+1]_20 chrX:4966848-4966928 0.00012 5_[+1]_67 chrX:8566183-8566263 0.00012 18_[+1]_54 chrI:13399801-13399881 0.00012 27_[+1]_45 chrV:11449650-11449730 0.00012 47_[+1]_25 chrIV:4264761-4264841 0.00012 42_[+1]_30 chrII:8568416-8568496 0.00012 28_[+1]_44 chrI:13285139-13285219 0.00015 39_[+1]_33 chrV:9625824-9625904 0.00015 30_[+1]_42 chrX:16602566-16602646 0.00015 18_[+1]_54 chrII:9025690-9025770 0.00017 68_[+1]_4 chrV:16553045-16553125 0.00017 19_[+1]_53 chrI:14267468-14267548 0.0002 53_[+1]_19 chrII:13316732-13316812 0.0002 18_[+1]_54 chrV:17548705-17548785 0.00022 6_[+1]_66 chrI:6352797-6352877 0.00027 65_[+1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGSTCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTGSTCC width=8 seqs=33 chrIV:4243920-4244000 ( 48) GGTGGTCC 1 chrIII:11706103-11706183 ( 55) GGTGGTCC 1 chrII:4870107-4870187 ( 55) GGTGGTCC 1 chrIV:9269143-9269223 ( 70) GGTGGTCC 1 chrIV:13089916-13089996 ( 61) GGTGGTCC 1 chrIII:5954025-5954105 ( 73) GGTGGTCC 1 chrII:1105408-1105488 ( 20) GGTGGTCC 1 chrII:6710822-6710902 ( 66) GGTGGTCC 1 chrIV:325875-325955 ( 62) GGTGGTCC 1 chrIV:4656240-4656320 ( 41) GGTGGTCC 1 chrX:7536948-7537028 ( 54) GGTGGTCC 1 chrI:13817543-13817623 ( 22) GGTGCTCC 1 chrI:6844619-6844699 ( 14) GGTGCTCC 1 chrI:384882-384962 ( 26) GATGGTCC 1 chrIV:17183159-17183239 ( 38) GCTGGTCC 1 chrII:11015979-11016059 ( 17) GCTGGTCC 1 chrX:13510460-13510540 ( 62) GCTGGTCC 1 chrIII:11758909-11758989 ( 53) GATGCTCC 1 chrX:4966848-4966928 ( 6) GATGCTCC 1 chrX:8566183-8566263 ( 19) GTTGGTCC 1 chrI:13399801-13399881 ( 28) GTTGGTCC 1 chrV:11449650-11449730 ( 48) GATGCTCC 1 chrIV:4264761-4264841 ( 43) GATGCTCC 1 chrII:8568416-8568496 ( 29) GATGCTCC 1 chrI:13285139-13285219 ( 40) GCTGCTCC 1 chrV:9625824-9625904 ( 31) GCTGCTCC 1 chrX:16602566-16602646 ( 19) GCTGCTCC 1 chrII:9025690-9025770 ( 69) GTTGCTCC 1 chrV:16553045-16553125 ( 20) GTTGCTCC 1 chrI:14267468-14267548 ( 54) GGCGGTCC 1 chrII:13316732-13316812 ( 19) GGCGGTCC 1 chrV:17548705-17548785 ( 7) GGCGCTCC 1 chrI:6352797-6352877 ( 66) GGAGGTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGSTCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.87609 E= 1.0e-002 -1169 -1169 191 -1169 -26 -63 96 -96 -284 -163 -1169 190 -1169 -1169 191 -1169 -1169 48 119 -1169 -1169 -1169 -1169 209 -1169 183 -1169 -1169 -1169 183 -1169 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGSTCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.0e-002 0.000000 0.000000 1.000000 0.000000 0.181818 0.181818 0.515152 0.121212 0.030303 0.090909 0.000000 0.878788 0.000000 0.000000 1.000000 0.000000 0.000000 0.393939 0.606061 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGSTCC MEME-1 regular expression -------------------------------------------------------------------------------- GGTG[GC]TCC -------------------------------------------------------------------------------- Time 9.89 secs. ******************************************************************************** ******************************************************************************** MOTIF AGMAGCAG MEME-2 width = 8 sites = 16 llr = 151 E-value = 2.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGMAGCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:6913a: pos.-specific C ::41:7:: probability G :a::9::a matrix T :::::::: bits 2.2 * * 2.0 ** ** 1.8 ** * ** 1.5 ** * ** Relative 1.3 ** ** ** Entropy 1.1 ******** (13.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAAGCAG consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMAGCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:11524273-11524353 72 1.16e-05 CGGTGAGCCG AGAAGCAG C chrIV:7098694-7098774 22 1.16e-05 GGATTTGTga agaagcag tagaggaaga chrIII:12165508-12165588 30 1.16e-05 GCTGAAAAGA AGAAGCAG ATGGAAATGC chrX:1120381-1120461 12 2.06e-05 CGAGTGTGGG AGAAGAAG GATACTCAAT chrIII:11466985-11467065 57 2.06e-05 gtagtgttga agaagaag agacgaagag chrX:11248285-11248365 70 2.06e-05 AAGAGTGGGA AGAAGAAG AAT chrII:4344481-4344561 30 2.06e-05 AAACGGGAGC AGAAGAAG CTGAAAGCGT chrX:8156077-8156157 31 3.57e-05 ACGACCACCT AGCAGCAG CTGCATGCCT chrIII:4947491-4947571 37 3.57e-05 caccaaccgc agcagcag caccCAATGA chrIV:8079939-8080019 24 3.57e-05 TCCCTTGTAG AGCAGCAG CTTCATCTTC chrII:12806001-12806081 66 3.57e-05 GAACACCCAG AGCAGCAG CATAACA chrIII:7656633-7656713 8 3.57e-05 TGGCTAC AGCAGCAG GCGGCAGGAG chrI:3921550-3921630 3 3.57e-05 GC AGCAGCAG CAATCTGAAC chrV:17548705-17548785 42 5.69e-05 CCCAGACTCC AGAAACAG TCCTAGGCTT chrV:19591014-19591094 19 6.42e-05 CGAATGAGCC AGAAAAAG AGCTCCGGGG chrX:9941527-9941607 61 9.17e-05 GGGGCACATG AGACGCAG ACAGTTGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMAGCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11524273-11524353 1.2e-05 71_[+2]_1 chrIV:7098694-7098774 1.2e-05 21_[+2]_51 chrIII:12165508-12165588 1.2e-05 29_[+2]_43 chrX:1120381-1120461 2.1e-05 11_[+2]_61 chrIII:11466985-11467065 2.1e-05 56_[+2]_16 chrX:11248285-11248365 2.1e-05 69_[+2]_3 chrII:4344481-4344561 2.1e-05 29_[+2]_43 chrX:8156077-8156157 3.6e-05 30_[+2]_42 chrIII:4947491-4947571 3.6e-05 36_[+2]_36 chrIV:8079939-8080019 3.6e-05 23_[+2]_49 chrII:12806001-12806081 3.6e-05 65_[+2]_7 chrIII:7656633-7656713 3.6e-05 7_[+2]_65 chrI:3921550-3921630 3.6e-05 2_[+2]_70 chrV:17548705-17548785 5.7e-05 41_[+2]_31 chrV:19591014-19591094 6.4e-05 18_[+2]_54 chrX:9941527-9941607 9.2e-05 60_[+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMAGCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGMAGCAG width=8 seqs=16 chrI:11524273-11524353 ( 72) AGAAGCAG 1 chrIV:7098694-7098774 ( 22) AGAAGCAG 1 chrIII:12165508-12165588 ( 30) AGAAGCAG 1 chrX:1120381-1120461 ( 12) AGAAGAAG 1 chrIII:11466985-11467065 ( 57) AGAAGAAG 1 chrX:11248285-11248365 ( 70) AGAAGAAG 1 chrII:4344481-4344561 ( 30) AGAAGAAG 1 chrX:8156077-8156157 ( 31) AGCAGCAG 1 chrIII:4947491-4947571 ( 37) AGCAGCAG 1 chrIV:8079939-8080019 ( 24) AGCAGCAG 1 chrII:12806001-12806081 ( 66) AGCAGCAG 1 chrIII:7656633-7656713 ( 8) AGCAGCAG 1 chrI:3921550-3921630 ( 3) AGCAGCAG 1 chrV:17548705-17548785 ( 42) AGAAACAG 1 chrV:19591014-19591094 ( 19) AGAAAAAG 1 chrX:9941527-9941607 ( 61) AGACGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMAGCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8918 E= 2.6e+002 220 -1064 -1064 -1064 -1064 -1064 191 -1064 153 41 -1064 -1064 211 -217 -1064 -1064 -80 -1064 172 -1064 53 128 -1064 -1064 220 -1064 -1064 -1064 -1064 -1064 191 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMAGCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.6e+002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.625000 0.375000 0.000000 0.000000 0.937500 0.062500 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.312500 0.687500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMAGCAG MEME-2 regular expression -------------------------------------------------------------------------------- AG[AC]AG[CA]AG -------------------------------------------------------------------------------- Time 15.27 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACAAAA MEME-3 width = 8 sites = 7 llr = 77 E-value = 1.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACAAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:a1aaaa pos.-specific C :a:7:::: probability G :::1:::: matrix T :::::::: bits 2.2 * * **** 2.0 * * **** 1.8 *** **** 1.5 *** **** Relative 1.3 *** **** Entropy 1.1 *** **** (15.8 bits) 0.9 *** **** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2901216-2901296 38 8.30e-06 ACACACACAT ACACAAAA CCTCCTCCTT chrIII:9700400-9700480 32 8.30e-06 CACTTAAACA ACACAAAA CGCTAACCAA chrV:9964509-9964589 29 8.30e-06 GCTGATGGAG ACACAAAA TGGAAGGAGA chrX:17369709-17369789 12 8.30e-06 AAGAGCGACA ACACAAAA GACTAGGGCC chrI:12739380-12739460 64 8.30e-06 ACTGCCACTC ACACAAAA CTATCCGGT chrV:4860594-4860674 6 1.47e-05 GGGGA ACAAAAAA CATTGAAATT chrI:12166045-12166125 72 2.25e-05 AGGTATATAT ACAGAAAA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2901216-2901296 8.3e-06 37_[+3]_35 chrIII:9700400-9700480 8.3e-06 31_[+3]_41 chrV:9964509-9964589 8.3e-06 28_[+3]_44 chrX:17369709-17369789 8.3e-06 11_[+3]_61 chrI:12739380-12739460 8.3e-06 63_[+3]_9 chrV:4860594-4860674 1.5e-05 5_[+3]_67 chrI:12166045-12166125 2.2e-05 71_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACAAAA width=8 seqs=7 chrX:2901216-2901296 ( 38) ACACAAAA 1 chrIII:9700400-9700480 ( 32) ACACAAAA 1 chrV:9964509-9964589 ( 29) ACACAAAA 1 chrX:17369709-17369789 ( 12) ACACAAAA 1 chrI:12739380-12739460 ( 64) ACACAAAA 1 chrV:4860594-4860674 ( 6) ACAAAAAA 1 chrI:12166045-12166125 ( 72) ACAGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.9536 E= 1.1e+003 220 -945 -945 -945 -945 182 -945 -945 220 -945 -945 -945 -60 134 -89 -945 220 -945 -945 -945 220 -945 -945 -945 220 -945 -945 -945 220 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.1e+003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.142857 0.714286 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAAAA MEME-3 regular expression -------------------------------------------------------------------------------- ACACAAAA -------------------------------------------------------------------------------- Time 18.96 secs. ******************************************************************************** ******************************************************************************** MOTIF TYTTCTTC MEME-4 width = 8 sites = 29 llr = 242 E-value = 1.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTTCTTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 261:a:29 probability G ::1::::: matrix T 848a:a81 bits 2.2 2.0 * * 1.8 *** 1.5 *** * Relative 1.3 * ***** Entropy 1.1 * ****** (12.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTCTTC consensus CT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTCTTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:13159352-13159432 54 1.64e-05 GGCCATTTTC TCTTCTTC TGTTGGACAT chrX:3706520-3706600 43 1.64e-05 TTCCTATTCT TCTTCTTC TCTCCCGGCG chrIV:8079939-8080019 40 1.64e-05 AGCTTCATCT TCTTCTTC TTTTGCACTC chrX:12655529-12655609 14 1.64e-05 CGGCGCGCTA TCTTCTTC TCGGTTTTCA chrIV:13006854-13006934 47 1.64e-05 ACTtttttct tcttcttc ttgttctATA chrIII:6013150-6013230 14 3.02e-05 ATTTTTGAAA TTTTCTTC TAGAAGATAC chrX:2901216-2901296 58 3.02e-05 TCCTCCTTCT TTTTCTTC TCCATAGCCG chrX:17315057-17315137 24 3.02e-05 TTCACCGCCG TTTTCTTC TCGGCGTCTC chrV:4181935-4182015 18 3.02e-05 CCTTGTATCG TTTTCTTC GAGAGAAAAA chrII:4907321-4907401 25 3.02e-05 CTTCTATGTT TTTTCTTC CAATCTTTCT chrIV:9269143-9269223 40 4.98e-05 GCGTTCTCTT TCTTCTCC AGTCTCGTCG chrIV:13089916-13089996 16 4.98e-05 TGGCTCCCCG TCTTCTCC TTGATCTCCA chrII:8568416-8568496 2 4.98e-05 A TCTTCTCC ACATTGTCCT chrII:15020398-15020478 27 6.62e-05 ACCTTCGACG TTTTCTCC ACCGACTCGA chrV:5319604-5319684 30 6.62e-05 CACGCCTCTA TTTTCTCC GTCGAATAGG chrIV:12836379-12836459 34 8.58e-05 ctccttcttc ccttcttc attcttccat chrV:7106858-7106938 6 8.58e-05 GCAGG CCTTCTTC GTTTTCTCGC chrIII:11758909-11758989 23 1.02e-04 TGTATATGCT CTTTCTTC ATGTGCTCCA chrII:2785803-2785883 41 1.02e-04 CTTTCGAGCT CTTTCTTC CTCGGAGTTT chrIV:8627428-8627508 56 1.22e-04 TCCGCGCTCC TCCTCTTC ACCACCATAG chrIV:1107398-1107478 29 1.22e-04 CCCCAGCGGG TCCTCTTC ATTCGCCGTC chrV:2800813-2800893 24 1.22e-04 CTGCCGACGC TCCTCTTC CAATCGCTCG chrII:12789537-12789617 72 1.22e-04 AAACGGGGAT TCCTCTTC C chrIII:2750497-2750577 38 1.52e-04 ATATCTGCTG TCTTCTTT CACCTACAAC chrX:8156077-8156157 48 1.63e-04 GCTGCATGCC TTTTCTTT GCGTGCCATC chrIV:13030112-13030192 40 1.97e-04 GATAGCTGTG TTGTCTTC TAGTGTCTCC chrII:13316732-13316812 2 1.97e-04 A TTGTCTTC CCACATCCGG chrX:6807658-6807738 73 2.21e-04 TGTTCTTATT CCTTCTCC chrII:1238062-1238142 5 2.40e-04 TGCC CTTTCTCC CGCTGTCGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTCTTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:13159352-13159432 1.6e-05 53_[+4]_19 chrX:3706520-3706600 1.6e-05 42_[+4]_30 chrIV:8079939-8080019 1.6e-05 39_[+4]_33 chrX:12655529-12655609 1.6e-05 13_[+4]_59 chrIV:13006854-13006934 1.6e-05 46_[+4]_26 chrIII:6013150-6013230 3e-05 13_[+4]_59 chrX:2901216-2901296 3e-05 57_[+4]_15 chrX:17315057-17315137 3e-05 23_[+4]_49 chrV:4181935-4182015 3e-05 17_[+4]_55 chrII:4907321-4907401 3e-05 24_[+4]_48 chrIV:9269143-9269223 5e-05 39_[+4]_33 chrIV:13089916-13089996 5e-05 15_[+4]_57 chrII:8568416-8568496 5e-05 1_[+4]_71 chrII:15020398-15020478 6.6e-05 26_[+4]_46 chrV:5319604-5319684 6.6e-05 29_[+4]_43 chrIV:12836379-12836459 8.6e-05 33_[+4]_39 chrV:7106858-7106938 8.6e-05 5_[+4]_67 chrIII:11758909-11758989 0.0001 22_[+4]_50 chrII:2785803-2785883 0.0001 40_[+4]_32 chrIV:8627428-8627508 0.00012 55_[+4]_17 chrIV:1107398-1107478 0.00012 28_[+4]_44 chrV:2800813-2800893 0.00012 23_[+4]_49 chrII:12789537-12789617 0.00012 71_[+4]_1 chrIII:2750497-2750577 0.00015 37_[+4]_35 chrX:8156077-8156157 0.00016 47_[+4]_25 chrIV:13030112-13030192 0.0002 39_[+4]_33 chrII:13316732-13316812 0.0002 1_[+4]_71 chrX:6807658-6807738 0.00022 72_[+4] chrII:1238062-1238142 0.00024 4_[+4]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTCTTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTTCTTC width=8 seqs=29 chrV:13159352-13159432 ( 54) TCTTCTTC 1 chrX:3706520-3706600 ( 43) TCTTCTTC 1 chrIV:8079939-8080019 ( 40) TCTTCTTC 1 chrX:12655529-12655609 ( 14) TCTTCTTC 1 chrIV:13006854-13006934 ( 47) TCTTCTTC 1 chrIII:6013150-6013230 ( 14) TTTTCTTC 1 chrX:2901216-2901296 ( 58) TTTTCTTC 1 chrX:17315057-17315137 ( 24) TTTTCTTC 1 chrV:4181935-4182015 ( 18) TTTTCTTC 1 chrII:4907321-4907401 ( 25) TTTTCTTC 1 chrIV:9269143-9269223 ( 40) TCTTCTCC 1 chrIV:13089916-13089996 ( 16) TCTTCTCC 1 chrII:8568416-8568496 ( 2) TCTTCTCC 1 chrII:15020398-15020478 ( 27) TTTTCTCC 1 chrV:5319604-5319684 ( 30) TTTTCTCC 1 chrIV:12836379-12836459 ( 34) CCTTCTTC 1 chrV:7106858-7106938 ( 6) CCTTCTTC 1 chrIII:11758909-11758989 ( 23) CTTTCTTC 1 chrII:2785803-2785883 ( 41) CTTTCTTC 1 chrIV:8627428-8627508 ( 56) TCCTCTTC 1 chrIV:1107398-1107478 ( 29) TCCTCTTC 1 chrV:2800813-2800893 ( 24) TCCTCTTC 1 chrII:12789537-12789617 ( 72) TCCTCTTC 1 chrIII:2750497-2750577 ( 38) TCTTCTTT 1 chrX:8156077-8156157 ( 48) TTTTCTTT 1 chrIV:13030112-13030192 ( 40) TTGTCTTC 1 chrII:13316732-13316812 ( 2) TTGTCTTC 1 chrX:6807658-6807738 ( 73) CCTTCTCC 1 chrII:1238062-1238142 ( 5) CTTTCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTCTTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5458 E= 1.1e+003 -1150 -45 -1150 175 -1150 97 -1150 93 -1150 -103 -194 175 -1150 -1150 -1150 209 -1150 183 -1150 -1150 -1150 -1150 -1150 209 -1150 -22 -1150 169 -1150 172 -1150 -177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTCTTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.1e+003 0.000000 0.206897 0.000000 0.793103 0.000000 0.551724 0.000000 0.448276 0.000000 0.137931 0.068966 0.793103 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.241379 0.000000 0.758621 0.000000 0.931034 0.000000 0.068966 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTCTTC MEME-4 regular expression -------------------------------------------------------------------------------- [TC][CT]TTCT[TC]C -------------------------------------------------------------------------------- Time 22.60 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAATAAA MEME-5 width = 8 sites = 2 llr = 24 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAATAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A aaaa:aaa pos.-specific C :::::::: probability G :::::::: matrix T ::::a::: bits 2.2 **** *** 2.0 ******** 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAATAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:15505246-15505326 59 5.35e-06 CAGGGTGGCA AAAATAAA AGCAATGTGG chrX:9637151-9637231 39 5.35e-06 TGAATGAATA AAAATAAA GTGAAGCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:15505246-15505326 5.3e-06 58_[+5]_14 chrX:9637151-9637231 5.3e-06 38_[+5]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAATAAA width=8 seqs=2 chrV:15505246-15505326 ( 59) AAAATAAA 1 chrX:9637151-9637231 ( 39) AAAATAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.3073 E= 1.1e+004 220 -765 -765 -765 220 -765 -765 -765 220 -765 -765 -765 220 -765 -765 -765 -765 -765 -765 208 220 -765 -765 -765 220 -765 -765 -765 220 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.1e+004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATAAA MEME-5 regular expression -------------------------------------------------------------------------------- AAAATAAA -------------------------------------------------------------------------------- Time 26.18 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:12715948-12716028 4.14e-01 80 chrII:12727940-12728020 8.72e-01 80 chrII:12767587-12767667 7.69e-01 80 chrII:12764639-12764719 1.91e-01 80 chrI:3921550-3921630 4.01e-02 2_[+2(3.57e-05)]_70 chrX:13470060-13470140 2.37e-01 80 chrII:12824566-12824646 1.00e+00 80 chrII:8568416-8568496 1.01e-02 1_[+4(4.98e-05)]_71 chrV:116114-116194 6.66e-02 80 chrII:4141412-4141492 8.82e-02 80 chrX:7536948-7537028 6.21e-02 53_[+1(2.18e-05)]_19 chrIV:4656240-4656320 1.96e-01 31_[+1(8.62e-05)]_1_[+1(2.18e-05)]_\ 32 chrIV:4264761-4264841 1.19e-01 80 chrII:12718206-12718286 7.11e-01 80 chrI:3356754-3356834 5.03e-01 80 chrII:10704108-10704188 6.10e-01 80 chrI:11771175-11771255 8.00e-01 80 chrV:17812324-17812404 9.74e-01 80 chrIII:1930876-1930956 7.99e-02 32_[+2(3.57e-05)]_1_[+2(3.57e-05)]_\ 31 chrX:16318404-16318484 5.18e-01 80 chrI:6352797-6352877 1.64e-01 80 chrX:13510460-13510540 1.45e-01 52_[+1(8.62e-05)]_1_[+1(8.62e-05)]_\ 11 chrIII:13048103-13048183 5.59e-01 80 chrII:13316732-13316812 2.16e-04 80 chrII:12828695-12828775 2.95e-02 80 chrX:5518497-5518577 2.01e-01 80 chrI:6844619-6844699 1.32e-01 13_[+1(4.51e-05)]_59 chrIII:6380168-6380248 7.50e-01 80 chrI:7709171-7709251 3.24e-01 80 chrI:2305986-2306066 4.92e-01 80 chrIV:325875-325955 4.51e-02 52_[+1(6.30e-05)]_1_[+1(2.18e-05)]_\ 11 chrX:457609-457689 5.54e-03 45_[+2(6.42e-05)]_27 chrII:1229168-1229248 9.74e-01 80 chrV:11449650-11449730 2.71e-01 80 chrII:4344481-4344561 6.77e-02 29_[+2(2.06e-05)]_43 chrI:12739380-12739460 2.93e-02 63_[+3(8.30e-06)]_9 chrIII:7656633-7656713 6.19e-04 7_[+2(3.57e-05)]_65 chrI:3399574-3399654 9.93e-01 80 chrI:384882-384962 1.22e-02 25_[+1(6.30e-05)]_47 chrIV:13006854-13006934 1.70e-01 43_[+4(1.64e-05)]_29 chrII:384944-385024 9.92e-01 80 chrX:1602701-1602781 8.41e-01 80 chrIV:10869103-10869183 9.63e-01 80 chrII:10705499-10705579 2.18e-01 80 chrIV:3686438-3686518 9.84e-01 80 chrI:13399801-13399881 5.57e-02 80 chrI:2781254-2781334 3.35e-01 80 chrV:9628665-9628745 9.83e-01 80 chrIII:9349689-9349769 2.26e-01 80 chrX:11384810-11384890 1.43e-01 80 chrII:6710822-6710902 2.28e-02 2_[+1(2.18e-05)]_19_[+1(4.51e-05)]_\ 28_[+1(2.18e-05)]_7 chrX:12823251-12823331 7.24e-01 80 chrV:7106858-7106938 3.22e-01 5_[+4(8.58e-05)]_67 chrV:5319604-5319684 2.07e-02 29_[+4(6.62e-05)]_43 chrIV:13023107-13023187 8.37e-02 80 chrX:1517679-1517759 7.60e-02 80 chrV:17151529-17151609 5.04e-01 80 chrX:7994590-7994670 5.22e-01 80 chrII:15008784-15008864 2.16e-01 80 chrX:7562753-7562833 4.85e-01 80 chrX:12655529-12655609 9.49e-02 13_[+4(1.64e-05)]_59 chrI:12167326-12167406 8.06e-01 80 chrII:12348869-12348949 8.69e-01 80 chrX:10078202-10078282 1.85e-01 80 chrII:2985627-2985707 9.71e-01 80 chrI:12621744-12621824 9.93e-01 80 chrIII:4010300-4010380 9.05e-01 80 chrX:9494923-9495003 7.41e-01 80 chrX:8996920-8997000 5.89e-01 80 chrIV:1769232-1769312 8.92e-01 80 chrII:551466-551546 6.84e-01 80 chrX:1081995-1082075 7.53e-01 80 chrX:6151307-6151387 1.54e-01 80 chrI:5084823-5084903 3.17e-01 80 chrV:8620358-8620438 9.50e-01 80 chrI:2888907-2888987 5.28e-01 80 chrIII:12576110-12576190 3.73e-02 80 chrV:4667238-4667318 5.57e-01 80 chrIV:7727261-7727341 2.34e-01 80 chrX:11248285-11248365 9.73e-03 69_[+2(2.06e-05)]_3 chrII:1105408-1105488 4.51e-02 19_[+1(2.18e-05)]_1_[+1(8.62e-05)]_\ 10_[+1(8.62e-05)]_1_[+1(8.62e-05)]_17 chrV:165851-165931 3.71e-01 80 chrX:17369709-17369789 7.86e-04 11_[+3(8.30e-06)]_61 chrII:2737083-2737163 1.13e-01 80 chrI:12340729-12340809 6.54e-01 80 chrIII:12165508-12165588 6.35e-03 29_[+2(1.16e-05)]_43 chrV:16553045-16553125 2.80e-01 80 chrV:12353691-12353771 8.00e-01 80 chrX:14027035-14027115 4.15e-01 80 chrIII:5954025-5954105 1.14e-01 18_[+1(2.18e-05)]_46_[+1(2.18e-05)] chrX:5056379-5056459 9.86e-01 80 chrI:4976240-4976320 9.33e-01 80 chrIII:2750497-2750577 3.85e-01 80 chrV:9964509-9964589 5.06e-03 28_[+3(8.30e-06)]_44 chrI:3138083-3138163 7.28e-01 80 chrIV:4403933-4404013 7.49e-01 80 chrIV:135555-135635 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chrIV:13089916-13089996 7.13e-03 15_[+4(4.98e-05)]_37_[+1(2.18e-05)]_\ 12 chrX:8292721-8292801 8.52e-01 80 chrIII:11466985-11467065 7.67e-02 56_[+2(2.06e-05)]_16 chrIV:17183159-17183239 2.78e-01 37_[+1(8.62e-05)]_35 chrV:8785673-8785753 8.61e-01 80 chrX:17315057-17315137 8.66e-02 23_[+4(3.02e-05)]_49 chrII:12968818-12968898 9.15e-01 80 chrII:12806001-12806081 2.42e-02 65_[+2(3.57e-05)]_7 chrI:11670236-11670316 3.06e-01 80 chrV:2800813-2800893 4.01e-03 80 chrIV:1687227-1687307 1.92e-01 80 chrIII:4666884-4666964 5.91e-01 80 chrIII:10857003-10857083 7.44e-01 80 chrIV:9269143-9269223 1.64e-03 39_[+4(4.98e-05)]_22_[+1(2.18e-05)]_\ 3 chrX:16415992-16416072 9.29e-01 80 chrII:15256028-15256108 1.86e-01 80 chrX:16602566-16602646 2.49e-01 80 chrX:9941527-9941607 3.77e-02 60_[+2(9.17e-05)]_12 chrIII:13713961-13714041 9.80e-01 80 chrIV:15938609-15938689 5.60e-01 80 chrX:1120381-1120461 1.02e-03 11_[+2(2.06e-05)]_61 chrIII:10891346-10891426 5.34e-01 80 chrI:13817543-13817623 1.46e-01 21_[+1(4.51e-05)]_51 chrX:8919453-8919533 2.29e-02 80 chrIII:7659586-7659666 5.63e-01 80 chrX:11257264-11257344 7.45e-01 80 chrIV:1107398-1107478 1.88e-01 80 chrIII:10094695-10094775 2.90e-01 80 chrIV:8079939-8080019 1.79e-03 23_[+2(3.57e-05)]_5_[+4(1.64e-05)]_\ 36 chrI:10469120-10469200 3.42e-02 80 chrIV:17099202-17099282 2.61e-01 80 chrI:11203495-11203575 6.88e-01 80 chrI:2728822-2728902 7.57e-01 80 chrV:15553982-15554062 7.15e-01 80 chrI:14543545-14543625 4.50e-01 80 chrII:5933225-5933305 5.31e-01 80 chrIII:931564-931644 2.92e-02 80 chrV:9625824-9625904 7.30e-02 80 chrIII:5769875-5769955 7.84e-01 80 chrIII:11917280-11917360 1.30e-01 80 chrI:12166045-12166125 9.58e-03 71_[+3(2.25e-05)]_1 chrII:3641793-3641873 9.99e-01 80 chrIII:4947491-4947571 1.22e-01 36_[+2(3.57e-05)]_36 chrX:3706520-3706600 1.44e-01 39_[+4(1.64e-05)]_33 chrII:4634116-4634196 7.75e-01 80 chrIV:12319099-12319179 5.76e-01 80 chrV:14686628-14686708 3.27e-01 80 chrV:7822731-7822811 4.79e-01 80 chrX:8566183-8566263 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80 chrI:14863625-14863705 4.05e-01 80 chrV:13159352-13159432 1.44e-01 53_[+4(1.64e-05)]_19 chrIV:3476777-3476857 8.88e-01 80 chrX:5209754-5209834 6.27e-01 80 chrIII:11758909-11758989 1.51e-02 80 chrII:5336131-5336211 7.27e-01 80 chrX:2598906-2598986 1.27e-02 80 chrX:8556828-8556908 9.08e-01 80 chrV:6880780-6880860 6.90e-01 80 chrII:4870107-4870187 1.60e-01 18_[+1(8.62e-05)]_19_[+1(2.18e-05)]_\ 1_[+1(2.18e-05)]_18 chrIII:11706103-11706183 1.35e-01 9_[+1(4.51e-05)]_37_[+1(2.18e-05)]_\ 18 chrV:12330603-12330683 8.38e-01 80 chrX:11210589-11210669 3.96e-01 80 chrI:7202534-7202614 9.62e-01 80 chrX:8156077-8156157 1.30e-02 30_[+2(3.57e-05)]_42 chrI:14612843-14612923 8.86e-02 11_[+2(9.17e-05)]_61 chrX:2375080-2375160 8.12e-01 80 chrV:4860594-4860674 4.95e-04 5_[+3(1.47e-05)]_67 chrV:19148640-19148720 1.00e+00 80 chrIII:6013150-6013230 7.48e-02 13_[+4(3.02e-05)]_59 chrIV:4243920-4244000 1.11e-01 20_[+1(4.51e-05)]_10_[+1(2.18e-05)]_\ 1_[+1(2.18e-05)]_25 chrI:6136572-6136652 1.92e-01 80 chrII:9025690-9025770 1.35e-01 80 chrII:13278595-13278675 6.97e-01 80 chrIV:16388429-16388509 9.79e-01 80 chrII:15020398-15020478 4.51e-02 26_[+4(6.62e-05)]_46 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************