******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/hlh-30.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:20419802-20419882 1.0000 80 chrIII:13360786-13360866 1.0000 80 chrI:6380910-6380990 1.0000 80 chrI:3103248-3103328 1.0000 80 chrV:10715325-10715405 1.0000 80 chrII:6561552-6561632 1.0000 80 chrX:2970346-2970426 1.0000 80 chrV:10722803-10722883 1.0000 80 chrV:19620265-19620345 1.0000 80 chrX:11662213-11662293 1.0000 80 chrX:14500029-14500109 1.0000 80 chrIV:5605422-5605502 1.0000 80 chrV:2231091-2231171 1.0000 80 chrIV:2412732-2412812 1.0000 80 chrX:12444599-12444679 1.0000 80 chrII:13166004-13166084 1.0000 80 chrI:9173211-9173291 1.0000 80 chrIV:10821453-10821533 1.0000 80 chrI:3722701-3722781 1.0000 80 chrX:14947425-14947505 1.0000 80 chrIII:620467-620547 1.0000 80 chrIII:13000616-13000696 1.0000 80 chrIII:7375062-7375142 1.0000 80 chrIV:11636451-11636531 1.0000 80 chrV:1467075-1467155 1.0000 80 chrIII:6603334-6603414 1.0000 80 chrIII:4849895-4849975 1.0000 80 chrX:10231061-10231141 1.0000 80 chrII:11830802-11830882 1.0000 80 chrIII:11836874-11836954 1.0000 80 chrX:4102346-4102426 1.0000 80 chrI:2125295-2125375 1.0000 80 chrI:9313712-9313792 1.0000 80 chrV:5845344-5845424 1.0000 80 chrII:4296464-4296544 1.0000 80 chrV:6348298-6348378 1.0000 80 chrIV:13413156-13413236 1.0000 80 chrV:2278188-2278268 1.0000 80 chrX:5645830-5645910 1.0000 80 chrV:10441666-10441746 1.0000 80 chrIII:7719527-7719607 1.0000 80 chrX:4266619-4266699 1.0000 80 chrIV:1923856-1923936 1.0000 80 chrV:2212083-2212163 1.0000 80 chrX:3102303-3102383 1.0000 80 chrV:13336074-13336154 1.0000 80 chrV:8014157-8014237 1.0000 80 chrIV:11523895-11523975 1.0000 80 chrX:17058510-17058590 1.0000 80 chrI:8784116-8784196 1.0000 80 chrV:8594548-8594628 1.0000 80 chrV:7848411-7848491 1.0000 80 chrIII:6359606-6359686 1.0000 80 chrI:7758301-7758381 1.0000 80 chrIV:12040605-12040685 1.0000 80 chrX:1526039-1526119 1.0000 80 chrIII:2816704-2816784 1.0000 80 chrIII:5939657-5939737 1.0000 80 chrX:10628582-10628662 1.0000 80 chrV:19524784-19524864 1.0000 80 chrIII:13056894-13056974 1.0000 80 chrII:5020859-5020939 1.0000 80 chrX:16218459-16218539 1.0000 80 chrIV:7168428-7168508 1.0000 80 chrIII:9827340-9827420 1.0000 80 chrX:13383427-13383507 1.0000 80 chrI:3316696-3316776 1.0000 80 chrIV:7166719-7166799 1.0000 80 chrX:14556583-14556663 1.0000 80 chrV:10723401-10723481 1.0000 80 chrII:9807739-9807819 1.0000 80 chrII:9647299-9647379 1.0000 80 chrIV:11487983-11488063 1.0000 80 chrIII:8331936-8332016 1.0000 80 chrII:2831306-2831386 1.0000 80 chrI:1689028-1689108 1.0000 80 chrV:1771890-1771970 1.0000 80 chrV:18569508-18569588 1.0000 80 chrIV:14609924-14610004 1.0000 80 chrIV:7908907-7908987 1.0000 80 chrIV:6522503-6522583 1.0000 80 chrIV:1035277-1035357 1.0000 80 chrI:395263-395343 1.0000 80 chrX:14503983-14504063 1.0000 80 chrII:15209443-15209523 1.0000 80 chrIV:4405314-4405394 1.0000 80 chrIV:13880984-13881064 1.0000 80 chrV:13659367-13659447 1.0000 80 chrV:10940100-10940180 1.0000 80 chrI:9736391-9736471 1.0000 80 chrI:8013513-8013593 1.0000 80 chrV:20004701-20004781 1.0000 80 chrIII:4899281-4899361 1.0000 80 chrX:12875844-12875924 1.0000 80 chrX:8026894-8026974 1.0000 80 chrX:16550677-16550757 1.0000 80 chrX:726418-726498 1.0000 80 chrV:13412078-13412158 1.0000 80 chrIV:17333658-17333738 1.0000 80 chrIII:6962214-6962294 1.0000 80 chrIII:11989982-11990062 1.0000 80 chrIII:6422876-6422956 1.0000 80 chrX:927764-927844 1.0000 80 chrIV:2773558-2773638 1.0000 80 chrIII:6948086-6948166 1.0000 80 chrIII:3952246-3952326 1.0000 80 chrIV:8232577-8232657 1.0000 80 chrV:8609879-8609959 1.0000 80 chrX:11469782-11469862 1.0000 80 chrII:2807831-2807911 1.0000 80 chrIV:7291215-7291295 1.0000 80 chrIII:2089577-2089657 1.0000 80 chrX:10688556-10688636 1.0000 80 chrX:13225248-13225328 1.0000 80 chrI:8787793-8787873 1.0000 80 chrIV:13521930-13522010 1.0000 80 chrV:13300647-13300727 1.0000 80 chrX:16732349-16732429 1.0000 80 chrIII:9511223-9511303 1.0000 80 chrII:2805077-2805157 1.0000 80 chrIII:5373068-5373148 1.0000 80 chrI:9438014-9438094 1.0000 80 chrX:15564483-15564563 1.0000 80 chrIV:5602546-5602626 1.0000 80 chrV:12066019-12066099 1.0000 80 chrV:16594672-16594752 1.0000 80 chrIII:3977143-3977223 1.0000 80 chrIII:8732110-8732190 1.0000 80 chrII:7394145-7394225 1.0000 80 chrII:13672216-13672296 1.0000 80 chrIII:6169043-6169123 1.0000 80 chrX:4219645-4219725 1.0000 80 chrIII:12565909-12565989 1.0000 80 chrIV:4216304-4216384 1.0000 80 chrIII:9580642-9580722 1.0000 80 chrII:9622002-9622082 1.0000 80 chrI:1687798-1687878 1.0000 80 chrV:10020125-10020205 1.0000 80 chrX:13603973-13604053 1.0000 80 chrI:5626493-5626573 1.0000 80 chrIV:14612221-14612301 1.0000 80 chrI:8869258-8869338 1.0000 80 chrIII:5380095-5380175 1.0000 80 chrII:4726290-4726370 1.0000 80 chrIII:5685612-5685692 1.0000 80 chrII:1310318-1310398 1.0000 80 chrX:16793643-16793723 1.0000 80 chrV:4847608-4847688 1.0000 80 chrIII:9353938-9354018 1.0000 80 chrIII:13626851-13626931 1.0000 80 chrIII:3377891-3377971 1.0000 80 chrII:9241735-9241815 1.0000 80 chrIII:9391120-9391200 1.0000 80 chrI:8640355-8640435 1.0000 80 chrV:20417970-20418050 1.0000 80 chrIV:7023972-7024052 1.0000 80 chrII:4090941-4091021 1.0000 80 chrIII:402283-402363 1.0000 80 chrI:1695194-1695274 1.0000 80 chrIV:11897828-11897908 1.0000 80 chrV:903648-903728 1.0000 80 chrV:10870239-10870319 1.0000 80 chrX:11478916-11478996 1.0000 80 chrII:6830208-6830288 1.0000 80 chrIV:16171474-16171554 1.0000 80 chrIV:5089136-5089216 1.0000 80 chrIV:8146356-8146436 1.0000 80 chrI:110067-110147 1.0000 80 chrX:12668239-12668319 1.0000 80 chrIII:5937097-5937177 1.0000 80 chrIII:3637379-3637459 1.0000 80 chrII:5874301-5874381 1.0000 80 chrIII:8761404-8761484 1.0000 80 chrIII:5877038-5877118 1.0000 80 chrI:10760430-10760510 1.0000 80 chrII:12053026-12053106 1.0000 80 chrII:5942726-5942806 1.0000 80 chrX:1026840-1026920 1.0000 80 chrII:2970561-2970641 1.0000 80 chrII:9156391-9156471 1.0000 80 chrX:13367111-13367191 1.0000 80 chrV:12512916-12512996 1.0000 80 chrX:17631834-17631914 1.0000 80 chrIII:6452875-6452955 1.0000 80 chrI:2689458-2689538 1.0000 80 chrIV:8225522-8225602 1.0000 80 chrX:2840432-2840512 1.0000 80 chrI:1701870-1701950 1.0000 80 chrIV:17442688-17442768 1.0000 80 chrX:13147261-13147341 1.0000 80 chrIV:2603843-2603923 1.0000 80 chrX:11790805-11790885 1.0000 80 chrIV:14413535-14413615 1.0000 80 chrIV:5590262-5590342 1.0000 80 chrII:10019819-10019899 1.0000 80 chrI:13812425-13812505 1.0000 80 chrIII:1682456-1682536 1.0000 80 chrV:19428262-19428342 1.0000 80 chrIII:4412285-4412365 1.0000 80 chrI:10560507-10560587 1.0000 80 chrX:14946850-14946930 1.0000 80 chrV:10536301-10536381 1.0000 80 chrX:14145865-14145945 1.0000 80 chrII:10547905-10547985 1.0000 80 chrII:11611637-11611717 1.0000 80 chrIV:10843104-10843184 1.0000 80 chrX:16813328-16813408 1.0000 80 chrIII:9666404-9666484 1.0000 80 chrIII:11774651-11774731 1.0000 80 chrX:1479787-1479867 1.0000 80 chrX:6729758-6729838 1.0000 80 chrII:13640364-13640444 1.0000 80 chrI:11674368-11674448 1.0000 80 chrX:5715531-5715611 1.0000 80 chrII:12823567-12823647 1.0000 80 chrX:945830-945910 1.0000 80 chrV:635799-635879 1.0000 80 chrV:10247154-10247234 1.0000 80 chrX:13328202-13328282 1.0000 80 chrIII:4950528-4950608 1.0000 80 chrI:4489549-4489629 1.0000 80 chrX:9540594-9540674 1.0000 80 chrX:12186345-12186425 1.0000 80 chrX:7437132-7437212 1.0000 80 chrIV:7145043-7145123 1.0000 80 chrV:8425317-8425397 1.0000 80 chrX:10630242-10630322 1.0000 80 chrX:7636140-7636220 1.0000 80 chrI:11871856-11871936 1.0000 80 chrII:9214666-9214746 1.0000 80 chrX:6515353-6515433 1.0000 80 chrI:11964899-11964979 1.0000 80 chrX:2858555-2858635 1.0000 80 chrIII:3703525-3703605 1.0000 80 chrX:2972568-2972648 1.0000 80 chrV:19666466-19666546 1.0000 80 chrX:16775640-16775720 1.0000 80 chrI:14642683-14642763 1.0000 80 chrV:10467413-10467493 1.0000 80 chrX:2802936-2803016 1.0000 80 chrV:12302275-12302355 1.0000 80 chrI:10514026-10514106 1.0000 80 chrIV:1906953-1907033 1.0000 80 chrX:2316341-2316421 1.0000 80 chrIV:8240972-8241052 1.0000 80 chrI:6077281-6077361 1.0000 80 chrIII:11847766-11847846 1.0000 80 chrII:6609584-6609664 1.0000 80 chrII:15195502-15195582 1.0000 80 chrX:15380031-15380111 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_hlh-30/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/hlh-30.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.276 C 0.221 G 0.222 T 0.281 Background letter frequencies (from file dataset with add-one prior applied): A 0.276 C 0.221 G 0.222 T 0.281 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCACGTGA MEME-1 width = 8 sites = 211 llr = 1272 E-value = 7.2e-088 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCACGTGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:8:22:6 pos.-specific C 1a:71::2 probability G 1::17:a1 matrix T 6:12:8:2 bits 2.2 * * 2.0 * * 1.7 * * 1.5 * * Relative 1.3 * * Entropy 1.1 *** * (8.7 bits) 0.9 ****** 0.7 ****** 0.4 ****** 0.2 ******** 0.0 -------- Multilevel TCACGTGA consensus A TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10630242-10630322 39 1.45e-05 ACCAGTTTTG TCACGTGA TTACTAATGT chrX:5715531-5715611 27 1.45e-05 AATTTATGGA TCACGTGA ACAGCCTGTC chrI:10560507-10560587 9 1.45e-05 ATCAAACT TCACGTGA TTAGATATAA chrIV:16171474-16171554 62 1.45e-05 CATGCGTTTT TCACGTGA TTCCACGAAT chrX:13225248-13225328 64 1.45e-05 ATATGGAAAG TCACGTGA ACTCACACA chrX:10688556-10688636 58 1.45e-05 TTGGATACGA TCACGTGA ACTTAACCCG chrII:9647299-9647379 37 1.45e-05 GTGCGCCGCT TCACGTGA CTATTTCGCT chrV:10723401-10723481 65 1.45e-05 ACCCGCTTCT TCACGTGA CGGAGACC chrX:5645830-5645910 3 1.45e-05 CT TCACGTGA AATGAAGAAA chrIII:4849895-4849975 37 1.45e-05 GCGTCGTCTA TCACGTGA AATTGGGGAG chrII:15195502-15195582 49 2.87e-05 CTCTTTCCAC ACACGTGA TGATCATCAA chrIII:402283-402363 6 2.87e-05 AAACT ACACGTGA TGACGTCACA chrI:5626493-5626573 44 2.87e-05 CTCTCTCTCT ACACGTGA TACTCCTCTC chrX:13603973-13604053 39 2.87e-05 CGGTTGGCGA ACACGTGA GAGATAACAG chrIII:13056894-13056974 41 2.87e-05 AACAAAAAAA ACACGTGA TCCGTCGAAA chrV:2212083-2212163 8 2.87e-05 ACATAAA ACACGTGA AAGAACGATG chrIII:7375062-7375142 34 2.87e-05 AGTTGTTACA ACACGTGA CCGACTAAAA chrIII:11774651-11774731 17 4.03e-05 AAACGACACG TCACGTGC ACCGTTTTCT chrII:11611637-11611717 48 4.03e-05 TTGAGGCCAT TCACGTGC CATTTTGCAG chrI:1701870-1701950 41 4.03e-05 CGGTCATGCG TCACGTGC GGTGGGTCTC chrIII:6169043-6169123 62 4.03e-05 TCGAGATGCG TCACGTGC TGGTCAGCTG chrX:11469782-11469862 45 4.03e-05 TTTCCTGCTC TCACGTGC GGTCGATTCT chrIII:11989982-11990062 6 4.03e-05 TCCAT TCACGTGC CTTTTCACAC chrX:2316341-2316421 11 1.03e-04 GAGGAGACTC TCATGTGA CCTTTGCAAA chrX:2802936-2803016 38 1.03e-04 TTCCGACAGC TCATGTGA TCTTTTTGGC chrX:2858555-2858635 34 1.03e-04 TCATCGTTGG TCATGTGA TCAATCGATG chrI:4489549-4489629 43 1.03e-04 TTCTCCGTTA TCACATGA TTTTGCAAAA chrIV:14413535-14413615 41 1.03e-04 TGGCGGGTTA CCACGTGA TTCGGGAATT chrIV:17442688-17442768 27 1.03e-04 GCATGTAAAG TCATGTGA TATCCTTCCT chrX:13367111-13367191 2 1.03e-04 C TCACGTGT CGACGTCACC chrX:1026840-1026920 64 1.03e-04 TGTCTTCACT TCACGTGT AAAAGTGCG chrI:110067-110147 64 1.03e-04 AGGGCATTGG TCACATGA TTCATCAGC chrIV:8146356-8146436 46 1.03e-04 CGTATCTCAA TCACGTGT ACTATCTCAT chrII:4090941-4091021 7 1.03e-04 TGGTGA TCACATGA ACGACAAGAC chrIII:12565909-12565989 45 1.03e-04 TAGTGTCGTA TCATGTGA GGAGCAGAAA chrII:13672216-13672296 68 1.03e-04 AAAGAGAATT CCACGTGA ATTCA chrIII:3977143-3977223 64 1.03e-04 ACGCGCATGG TCATGTGA AAAGAACAT chrV:13412078-13412158 14 1.03e-04 CTCATAGGCA TCATGTGA ATGTGTGACA chrI:9736391-9736471 47 1.03e-04 TCTCATGTTA TCACGTGT CTACTGATGT chrV:1771890-1771970 33 1.03e-04 CAGCGGGAAT TCATGTGA ACACGGGAGA chrX:13383427-13383507 2 1.03e-04 A TCACATGA CTTGTGTGTT chrV:19524784-19524864 60 1.03e-04 CTGGGCGGAG TCATGTGA GCGACTGTAG chrX:10628582-10628662 54 1.03e-04 ATCATTGCAA CCACGTGA AGATACCATT chrIII:5939657-5939737 30 1.03e-04 TATGACGGGC TCACATGA TTCTCCCCAG chrV:13336074-13336154 60 1.03e-04 AAAACGGGTT TCACGTGT TCGATTTGCA chrV:2231091-2231171 49 1.03e-04 CTTTTCGTTG TCATGTGA ATTTTTCAAG chrIII:5877038-5877118 40 1.14e-04 AGAAGGATAG TCACGTGG ATTTGAATCA chrI:8640355-8640435 33 1.14e-04 AAAGAGTACC TCACGTGG TGTATGCAGA chrIV:7908907-7908987 16 1.14e-04 GTCTGCGAGA TCACGTGG AGAGACCGCG chrV:16594672-16594752 23 1.29e-04 TGTTGGTCAG TCACGAGA CGAGGATTTC chrV:12066019-12066099 6 1.29e-04 TTAAA TCACGAGA CTTCTTGGAC chrX:927764-927844 39 1.29e-04 ATCGAACAAG TCACGAGA AACGTTCCAA chrIV:6522503-6522583 54 1.29e-04 TCGTCCTTCA TCACGAGA ATTTCTCGAG chrX:1479787-1479867 55 1.40e-04 CGAGTGGCTC GCACGTGA TAACAAGGGA chrV:10020125-10020205 66 1.40e-04 CAAGGGGCGG GCACGTGA AGGCCTT chrIV:11636451-11636531 62 1.40e-04 TTCTCTCGTG GCACGTGA ATGAGCGGCA chrIII:5937097-5937177 23 1.55e-04 TTCTTTCATT TCTCGTGA TCTTGCTCGC chrI:8869258-8869338 50 1.55e-04 CTCGTGAATT TCTCGTGA TTTTCTCCTT chrI:9438014-9438094 52 1.55e-04 GTGCCCCGAA TCTCGTGA TTTCTCCGGA chrX:4266619-4266699 64 1.55e-04 CAATGTTGTT TCTCGTGA CTTTTGGCA chrIII:5685612-5685692 62 1.66e-04 AAGTAGGAAA ACACGTGC ATTTACACAG chrV:8425317-8425397 18 2.31e-04 CGAAAAGAGA ACACATGA GCACAAAACA chrIII:9666404-9666484 34 2.31e-04 TCCCAGACAG ACATGTGA CTCAAAACCA chrIV:13521930-13522010 3 2.31e-04 CG ACACATGA CGCCTATCAA chrIV:1035277-1035357 40 2.31e-04 AGTCGCAGAG ACACATGA TGGCCTCCCA chrII:5020859-5020939 44 2.31e-04 GTGACAATGG ACATGTGA TTGTGTCTCG chrII:4296464-4296544 24 2.31e-04 AGGAACATAA ACATGTGA AGATGCACGT chrIII:620467-620547 15 2.31e-04 AATATAACGA ACATGTGA TGATTTCAGG chrIV:10821453-10821533 4 2.31e-04 CAC ACATGTGA CGAATTCTAG chrIII:3703525-3703605 27 2.81e-04 AACACGAATA TCACATGC ATGCGCATTT chrII:5942726-5942806 35 2.81e-04 TATGTCCAAA TCATGTGC ACTTTGAGTC chrI:10760430-10760510 4 2.81e-04 CAG TCATGTGC ttcttcttct chrIV:5089136-5089216 2 2.81e-04 A ACACGTGG AGCTTGAGCA chrIV:13880984-13881064 59 2.81e-04 GTGGCACACT ACACGTGG CTATTAACCT chrV:8014157-8014237 22 2.81e-04 AATGAAATCG TCATGTGC AGAGTTCGAA chrV:5845344-5845424 52 2.81e-04 ACACGATGTC TCACATGC TTTATGCAGA chrI:9173211-9173291 22 2.81e-04 TCTCTGCTCA TCACATGC TTTTTCAATG chrX:14500029-14500109 60 2.81e-04 GGTCTCTCAT TCACATGC CAGCTGGCCT chrX:11662213-11662293 25 2.81e-04 GGTAAGAGGC CCACGTGC GATGATGACT chrIII:1682456-1682536 58 3.09e-04 ATAACAATTA TCAGGTGA TAAGAGGGGT chrI:13812425-13812505 22 3.09e-04 TAATCAATAT ACACGAGA CTCCCCTCTG chrI:2689458-2689538 25 3.09e-04 CAGTTTCTTA TCAGGTGA CTTGAGGTTG chrV:10870239-10870319 10 3.09e-04 GATGATAAG ACACGAGA CAGAAGGATC chrI:1689028-1689108 9 3.09e-04 TCGAACAA TCAGGTGA CTCGTCGGAA chrV:7848411-7848491 25 3.09e-04 GGCAAGAAGT ACACGAGA AATCGAACGT chrX:3102303-3102383 70 3.09e-04 ATGGCAAAAA ACACGAGA TAT chrIV:13413156-13413236 28 3.09e-04 AAGTGTTTGA ACACGAGA GATTACGCCT chrIII:11836874-11836954 16 3.09e-04 AGATAGAAGA ACACGAGA ATACTCTTGA chrII:11830802-11830882 17 3.09e-04 TTTGCATTTT ACACGAGA GGGAGCGCGT chrV:1467075-1467155 41 3.09e-04 TCTAATGTGA ACACGAGA CCATAAGAGA chrV:10715325-10715405 54 3.09e-04 GTGACTTCGA ACACGAGA ATGCGTTGGG chrV:10467413-10467493 6 4.21e-04 TATTA CCATGTGA TGAAGTTCAG chrI:14642683-14642763 59 4.21e-04 CGAATTTAGG TCACATGT TGATATATTA chrX:2840432-2840512 65 4.21e-04 GAATCACGAA TCACATGT TTGTTTTG chrIV:8225522-8225602 44 4.21e-04 TTTCGATTAA CCACGTGT TTGCTCTTTT chrIII:8761404-8761484 2 4.21e-04 A TCATATGA ATCATAAAGA chrIV:11897828-11897908 44 4.21e-04 CATGAGACTA CCACATGA TAAAAAGTGG chrII:9622002-9622082 16 4.21e-04 TTCTCTAAAA TCACGAGC CACCTTCACT chrIV:5602546-5602626 32 4.21e-04 TTGTGATCAA CCATGTGA TTCTGTGATG chrX:15564483-15564563 37 4.21e-04 CTTCGTTTAC CCATGTGA CCGTGGGGGT chrIV:8232577-8232657 52 4.21e-04 GGCGACACAC TCATGTGT Ttctctctct chrIV:2773558-2773638 42 4.21e-04 GGCGGGAAAG TCATATGA CACTTTTTTG chrIV:17333658-17333738 30 4.21e-04 ATCTATGAGG CCACATGA TATAGAGTGA chrX:726418-726498 62 4.21e-04 CATTCATTTC TCATGTGT TTTTTGGGAA chrX:14503983-14504063 40 4.21e-04 AGACAAAAGG TCACATGT TTCAGTTTGT chrX:16218459-16218539 31 4.21e-04 CTCTCACATG TCACATGT TTCTGAAGTC chrIII:6359606-6359686 42 4.21e-04 ACAACTCCTA TCATATGA TGGAATGGAA chrI:8784116-8784196 21 4.21e-04 AGCGTTCACG TCATGTGT CTAATCGGCG chrX:10231061-10231141 24 4.21e-04 AAACCAGATA CCACGTGT AATCGTCAGA chrIII:13360786-13360866 19 4.21e-04 AAAAGATAAA TCATATGA TTGTCTTGTG chrII:5874301-5874381 21 4.68e-04 TTTTCCTAAG TCACATGG TTTTACATGT chrII:4726290-4726370 63 4.68e-04 CTGAACGTTT GCACGTGC TTTTGACTTT chrIII:8732110-8732190 39 4.68e-04 GACAGACAAC CCACGTGG GGTATCCTCT chrX:8026894-8026974 39 4.68e-04 CTTGACCTGG TCACATGG CAAGTGTGTA chrV:20004701-20004781 31 4.68e-04 CTTTTGCATC TCACATGG AGGCGAAAAG chrV:2278188-2278268 63 4.68e-04 AGAAACAGTG TCATGTGG CAGAGGGGTG chrII:12823567-12823647 10 5.44e-04 CCCCTTTTC TCACGAGT AGCTTAGTCA chrII:10547905-10547985 26 5.44e-04 GGAGTATATG TCACAAGA CCAGTCAGCC chrIII:9827340-9827420 13 5.44e-04 GTGGTTAGAA TCACAAGA CAACACCTCG chrIV:2412732-2412812 1 5.44e-04 . TCATGAGA AGAGTGAATG chrX:2970346-2970426 11 5.44e-04 TAAACTCAAA CCACGAGA CACTGGATTC chrV:20419802-20419882 62 5.44e-04 AAAAAGGAGA ACTCGTGA GCCCTATAGG chrIV:7291215-7291295 22 6.08e-04 CTTACAGACA TCACGAGG AAAAACAGAA chrV:8609879-8609959 16 6.08e-04 TAGCAGAAGC GCATGTGA CGCCGCGCTA chrV:6348298-6348378 36 6.08e-04 AAAGACACAG GCACGTGT CTTGGTGGCG chrX:13147261-13147341 15 6.17e-04 ACTAGTCCTG GCACGTGG TGGGTGTTAA chrII:1310318-1310398 66 6.17e-04 AATAGAGAAA GCACGTGG TTTTATA chrI:3722701-3722781 40 6.17e-04 ATGAGTAAAG GCACGTGG TAGGCAGGCC chrI:10514026-10514106 73 7.18e-04 CTTAATTGTG TCTCATGA chrX:2972568-2972648 25 7.18e-04 GGACATTTGA CCTCGTGA TCATATTTCA chrX:12186345-12186425 62 7.18e-04 AAAAAAGGTT CCTCGTGA TGAATGGGAT chrIV:5590262-5590342 6 7.18e-04 TTTCC TCTCATGA CCTCTTTTAC chrII:9241735-9241815 15 7.18e-04 AATAATGAGA ACACCTGA CAAGAAAAGA chrIII:9511223-9511303 72 7.18e-04 AGAGTTGCCA CCTCGTGA T chrX:16550677-16550757 46 7.18e-04 CCACATGTAG TCTCATGA TCACAACATT chrIV:1923856-1923936 44 7.18e-04 TTTATGAAAT CCTCGTGA TGACCAGCCG chrIV:8240972-8241052 72 7.70e-04 CAAATCACTT TCTCGTGG T chrIII:3377891-3377971 26 8.10e-04 TTATGACTTG TCACGGGA AAGGAGTCTC chrI:3103248-3103328 62 8.10e-04 tctattctcg tctcGAGA CCTATTTCTT chrIII:11847766-11847846 29 9.47e-04 TCCGGACGAA TCATCTGA CGAGGTACGG chrX:7636140-7636220 69 9.47e-04 TTTTTCTATT CCACCTGA CGCC chrIII:4950528-4950608 24 9.47e-04 GCCGCGTCGG TCATCTGA CTGCTTCTCT chrX:4219645-4219725 48 9.47e-04 AAAATGCTCG CCACCTGA CTGAGTCTTT chrIII:4899281-4899361 59 9.47e-04 AAGACTTATT CCACCTGA CCAGAAAATT chrV:10940100-10940180 14 9.47e-04 AAACTTCCGG TCATCTGA TATCTCTTCC chrIV:14609924-14610004 16 9.47e-04 GTGATCTGTA ACATATGA CAAAGTACCC chrII:12053026-12053106 59 1.14e-03 CACCAGGTTC TCACCAGA TTCCTCCCGT chrIV:4405314-4405394 65 1.14e-03 GATTAGCACA TCAGATGA TCTTTCTC chrII:13166004-13166084 41 1.14e-03 GCAGTCTATT ACACAAGA TACGAGGGGT chrI:11871856-11871936 23 1.29e-03 agaCCATTAG TCATATGT TCGAATGTTT chrX:7437132-7437212 50 1.29e-03 ATAAATTAAA TCATATGT GGGAGAGAAA chrIII:4412285-4412365 55 1.29e-03 GTTCCTGCGA ACTCGTGC ACTGAGGTCA chrIII:5380095-5380175 20 1.29e-03 CAAGAGGGCG ACTCGTGC TGCTGGAATG chrII:2805077-2805157 11 1.29e-03 ATTTTTCAGA TCAGGTGG TTGTTGGGAG chrV:10722803-10722883 24 1.29e-03 ACCATCTCTA CCATATGA CCCTTAATTA chrII:10019819-10019899 40 1.38e-03 CTACCACGGG TCATATGG TCGGTTTTTC chrIII:6452875-6452955 45 1.38e-03 TGGTGTGCAG TCATATGG TTTTGGCGGG chrX:12668239-12668319 66 1.38e-03 AAATAGTGTA TCAGGAGA CACGCAG chrX:16732349-16732429 45 1.38e-03 GGCAAAAAAA GCACATGC TTTTCGCCCC chrIV:7166719-7166799 69 1.38e-03 CATGTGCTTA GCATGTGC CAAC chrV:903648-903728 42 1.57e-03 GCGAGGGACT ACTCGTGT GGTGAACGTG chrIV:7023972-7024052 21 1.57e-03 CTCTTTGTCC TCATGAGT CATTACACAA chrI:8787793-8787873 64 1.57e-03 TCAATAGACC ACTCGTGT TTTTTTCTA chrIV:11487983-11488063 52 1.57e-03 ATGATGATGG GCAGGTGA TCTCTTATCA chrIV:11523895-11523975 44 1.57e-03 ACGCTCACAC ACTCATGA CATACACACA chrIII:6603334-6603414 67 1.57e-03 TCACACACAG TCACAAGT CTTTGT chrX:14946850-14946930 61 1.73e-03 GCTTACGAGA ACACCTGC TGTTCAGGTC chrIII:9353938-9354018 66 1.73e-03 CCCCTCTTGG TCACGCGC CGGCGAC chrIII:5373068-5373148 14 1.73e-03 GTGAGTGACA TCACAAGG GGAGACGCCA chrIII:2816704-2816784 31 1.73e-03 CTATCACCAT CCTCGTGC AATAGTGTGA chrV:10441666-10441746 41 1.73e-03 CTGTCTGATA TCTCATGC TCATCTGTAC chrI:2125295-2125375 13 1.73e-03 tctctctctc tctcATGC TTTTTCCAAT chrX:12444599-12444679 65 1.73e-03 GGTTTCATTA GCACATGT TGCTATGT chrI:1687798-1687878 22 1.81e-03 TGCAGCAAGA ACTCGAGA AAGTTGGCAA chrII:15209443-15209523 72 1.81e-03 TTCACTACAC ACTCGAGA T chrX:15380031-15380111 60 2.07e-03 ACTACAAAAA GCACGAGT TACGCTAACT chrIV:10843104-10843184 10 2.07e-03 TCTGGCTCG GCACGAGT GCTCGTTTTT chrV:19428262-19428342 33 2.07e-03 GACAAGGATG TCACGCGT GTACAAATGG chrII:6830208-6830288 57 2.07e-03 tAATTCCTTG TCACGCGT GTTCTGGGAG chrI:1695194-1695274 63 2.07e-03 TCTCCCCTTT ACACCTGT CACGGTGTCA chrIII:6962214-6962294 60 2.07e-03 TCTTTTCATC TCACACGA TATATGTATT chrX:14947425-14947505 24 2.07e-03 GTCTCTAGGT ACACCTGT TTGGACATCT chrX:12875844-12875924 57 2.19e-03 GTGCAGTCAT CCTCGTGG TGATATTGTC chrI:11674368-11674448 34 2.36e-03 CCGATAATAA TCAGCTGA CACGGGTCAC chrIV:2603843-2603923 20 2.36e-03 TCCAAATGAA TCAGCTGA CGCAGGCATA chrV:12512916-12512996 6 2.36e-03 GTTGA TCAGCTGA CACCTTTCAC chrII:9156391-9156471 17 2.36e-03 AATTACCATA TCATGGGA CACAAAATGA chrIII:9580642-9580722 56 2.36e-03 ATTTGCGTTG TCACGGGT TGAGCAATTT chrIV:4216304-4216384 18 2.36e-03 CACGCGGAGA TCATGGGA TCCATTCTCC chrII:6561552-6561632 36 2.36e-03 ATTGTTAAGG TCAGCTGA TTTCAGAGCA chrI:8013513-8013593 38 2.57e-03 cttgcttATG GCTCATGA CACCACACCA chrI:3316696-3316776 8 2.57e-03 CGCATCG ACAGGTGG CTTTTGGCTT chrV:19620265-19620345 24 2.89e-03 ATACGCCTAG ACATGAGT ATTTTTCGGT chrIII:9391120-9391200 51 3.09e-03 AGGTCACTAA CCATGAGC TTTTGAAATG chrIV:12040605-12040685 69 3.09e-03 ATAAGGGCCG ACTTGTGC TTTT chrX:16793643-16793723 52 3.27e-03 ACGTTTTTCG AGACGTGA CCATTTTGAA chrII:9807739-9807819 54 3.27e-03 ATATGATTTG TCGCGTGT GATTTGAGCA chrV:10536301-10536381 19 3.61e-03 GAGAGACTGC TGACGTGC CAGATACATT chrV:13300647-13300727 39 3.61e-03 TCCCGTTGTC CCATGAGT GTGTTTTTTT chrIII:2089577-2089657 21 3.61e-03 TCTCTCCATC TCGCGTGG GGCGCCGTCA chrIII:7719527-7719607 30 3.61e-03 TTTCCCACTG TCACTTGA CTTTTGTGAT chrV:4847608-4847688 63 3.85e-03 AACAACAATG TCTTATGC CCCTCCTTTC chrI:9313712-9313792 7 3.85e-03 TGAAGA CCACGCGC CTGTCACAAT chrX:13328202-13328282 22 4.13e-03 TCAGCCGACA TGACATGA CTCTTATCTC chrI:395263-395343 21 4.13e-03 CCCGTGGAGA GCGCGTGA GAGTGCAGAA chrV:10247154-10247234 63 4.70e-03 GCGAAGCAAA GCACGCGC GGCCTTTGAT chrX:11478916-11478996 12 4.70e-03 TCATGATAGA TCTTATGG CATAGTACAG chrX:9540594-9540674 54 5.01e-03 AGCTGCAGAA ACATCAGA ATCGTTTGAT chrV:20417970-20418050 49 5.01e-03 CACTCGCTTT TCAGCTGT GGCTCGCGGA chrX:16775640-16775720 60 5.30e-03 TGAATGGACC CCTCGAGG CGTGAGTGTG chrIII:3637379-3637459 54 5.87e-03 TCGGCGGAAA GCACGGGT AAACACTGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10630242-10630322 1.4e-05 38_[+1]_34 chrX:5715531-5715611 1.4e-05 26_[+1]_46 chrI:10560507-10560587 1.4e-05 8_[+1]_64 chrIV:16171474-16171554 1.4e-05 61_[+1]_11 chrX:13225248-13225328 1.4e-05 63_[+1]_9 chrX:10688556-10688636 1.4e-05 57_[+1]_15 chrII:9647299-9647379 1.4e-05 36_[+1]_36 chrV:10723401-10723481 1.4e-05 64_[+1]_8 chrX:5645830-5645910 1.4e-05 2_[+1]_70 chrIII:4849895-4849975 1.4e-05 36_[+1]_36 chrII:15195502-15195582 2.9e-05 48_[+1]_24 chrIII:402283-402363 2.9e-05 5_[+1]_67 chrI:5626493-5626573 2.9e-05 43_[+1]_29 chrX:13603973-13604053 2.9e-05 38_[+1]_34 chrIII:13056894-13056974 2.9e-05 40_[+1]_32 chrV:2212083-2212163 2.9e-05 7_[+1]_65 chrIII:7375062-7375142 2.9e-05 33_[+1]_39 chrIII:11774651-11774731 4e-05 16_[+1]_56 chrII:11611637-11611717 4e-05 47_[+1]_25 chrI:1701870-1701950 4e-05 40_[+1]_32 chrIII:6169043-6169123 4e-05 61_[+1]_11 chrX:11469782-11469862 4e-05 44_[+1]_28 chrIII:11989982-11990062 4e-05 5_[+1]_67 chrX:2316341-2316421 0.0001 10_[+1]_62 chrX:2802936-2803016 0.0001 37_[+1]_35 chrX:2858555-2858635 0.0001 33_[+1]_39 chrI:4489549-4489629 0.0001 42_[+1]_30 chrIV:14413535-14413615 0.0001 40_[+1]_32 chrIV:17442688-17442768 0.0001 26_[+1]_46 chrX:13367111-13367191 0.0001 1_[+1]_71 chrX:1026840-1026920 0.0001 63_[+1]_9 chrI:110067-110147 0.0001 63_[+1]_9 chrIV:8146356-8146436 0.0001 45_[+1]_27 chrII:4090941-4091021 0.0001 6_[+1]_66 chrIII:12565909-12565989 0.0001 44_[+1]_28 chrII:13672216-13672296 0.0001 67_[+1]_5 chrIII:3977143-3977223 0.0001 63_[+1]_9 chrV:13412078-13412158 0.0001 13_[+1]_59 chrI:9736391-9736471 0.0001 46_[+1]_26 chrV:1771890-1771970 0.0001 32_[+1]_40 chrX:13383427-13383507 0.0001 1_[+1]_71 chrV:19524784-19524864 0.0001 59_[+1]_13 chrX:10628582-10628662 0.0001 53_[+1]_19 chrIII:5939657-5939737 0.0001 29_[+1]_43 chrV:13336074-13336154 0.0001 59_[+1]_13 chrV:2231091-2231171 0.0001 48_[+1]_24 chrIII:5877038-5877118 0.00011 39_[+1]_33 chrI:8640355-8640435 0.00011 32_[+1]_40 chrIV:7908907-7908987 0.00011 15_[+1]_57 chrV:16594672-16594752 0.00013 22_[+1]_50 chrV:12066019-12066099 0.00013 5_[+1]_67 chrX:927764-927844 0.00013 38_[+1]_34 chrIV:6522503-6522583 0.00013 53_[+1]_19 chrX:1479787-1479867 0.00014 54_[+1]_18 chrV:10020125-10020205 0.00014 65_[+1]_7 chrIV:11636451-11636531 0.00014 61_[+1]_11 chrIII:5937097-5937177 0.00015 22_[+1]_50 chrI:8869258-8869338 0.00015 49_[+1]_23 chrI:9438014-9438094 0.00015 51_[+1]_21 chrX:4266619-4266699 0.00015 63_[+1]_9 chrIII:5685612-5685692 0.00017 61_[+1]_11 chrV:8425317-8425397 0.00023 17_[+1]_55 chrIII:9666404-9666484 0.00023 33_[+1]_39 chrIV:13521930-13522010 0.00023 2_[+1]_70 chrIV:1035277-1035357 0.00023 39_[+1]_33 chrII:5020859-5020939 0.00023 43_[+1]_29 chrII:4296464-4296544 0.00023 23_[+1]_49 chrIII:620467-620547 0.00023 14_[+1]_58 chrIV:10821453-10821533 0.00023 3_[+1]_69 chrIII:3703525-3703605 0.00028 26_[+1]_46 chrII:5942726-5942806 0.00028 34_[+1]_38 chrI:10760430-10760510 0.00028 3_[+1]_69 chrIV:5089136-5089216 0.00028 1_[+1]_71 chrIV:13880984-13881064 0.00028 58_[+1]_14 chrV:8014157-8014237 0.00028 21_[+1]_51 chrV:5845344-5845424 0.00028 51_[+1]_21 chrI:9173211-9173291 0.00028 21_[+1]_51 chrX:14500029-14500109 0.00028 59_[+1]_13 chrX:11662213-11662293 0.00028 24_[+1]_48 chrIII:1682456-1682536 0.00031 57_[+1]_15 chrI:13812425-13812505 0.00031 21_[+1]_51 chrI:2689458-2689538 0.00031 24_[+1]_48 chrV:10870239-10870319 0.00031 9_[+1]_63 chrI:1689028-1689108 0.00031 8_[+1]_64 chrV:7848411-7848491 0.00031 24_[+1]_48 chrX:3102303-3102383 0.00031 69_[+1]_3 chrIV:13413156-13413236 0.00031 27_[+1]_45 chrIII:11836874-11836954 0.00031 15_[+1]_57 chrII:11830802-11830882 0.00031 16_[+1]_56 chrV:1467075-1467155 0.00031 40_[+1]_32 chrV:10715325-10715405 0.00031 53_[+1]_19 chrV:10467413-10467493 0.00042 5_[+1]_67 chrI:14642683-14642763 0.00042 58_[+1]_14 chrX:2840432-2840512 0.00042 64_[+1]_8 chrIV:8225522-8225602 0.00042 43_[+1]_29 chrIII:8761404-8761484 0.00042 1_[+1]_71 chrIV:11897828-11897908 0.00042 43_[+1]_29 chrII:9622002-9622082 0.00042 15_[+1]_57 chrIV:5602546-5602626 0.00042 31_[+1]_41 chrX:15564483-15564563 0.00042 36_[+1]_36 chrIV:8232577-8232657 0.00042 51_[+1]_21 chrIV:2773558-2773638 0.00042 41_[+1]_31 chrIV:17333658-17333738 0.00042 29_[+1]_43 chrX:726418-726498 0.00042 61_[+1]_11 chrX:14503983-14504063 0.00042 39_[+1]_33 chrX:16218459-16218539 0.00042 30_[+1]_42 chrIII:6359606-6359686 0.00042 41_[+1]_31 chrI:8784116-8784196 0.00042 20_[+1]_52 chrX:10231061-10231141 0.00042 23_[+1]_49 chrIII:13360786-13360866 0.00042 18_[+1]_54 chrII:5874301-5874381 0.00047 20_[+1]_52 chrII:4726290-4726370 0.00047 62_[+1]_10 chrIII:8732110-8732190 0.00047 38_[+1]_34 chrX:8026894-8026974 0.00047 38_[+1]_34 chrV:20004701-20004781 0.00047 30_[+1]_42 chrV:2278188-2278268 0.00047 62_[+1]_10 chrII:12823567-12823647 0.00054 9_[+1]_63 chrII:10547905-10547985 0.00054 25_[+1]_47 chrIII:9827340-9827420 0.00054 12_[+1]_60 chrIV:2412732-2412812 0.00054 [+1]_72 chrX:2970346-2970426 0.00054 10_[+1]_62 chrV:20419802-20419882 0.00054 61_[+1]_11 chrIV:7291215-7291295 0.00061 21_[+1]_51 chrV:8609879-8609959 0.00061 15_[+1]_57 chrV:6348298-6348378 0.00061 35_[+1]_37 chrX:13147261-13147341 0.00062 14_[+1]_58 chrII:1310318-1310398 0.00062 65_[+1]_7 chrI:3722701-3722781 0.00062 39_[+1]_33 chrI:10514026-10514106 0.00072 72_[+1] chrX:2972568-2972648 0.00072 24_[+1]_48 chrX:12186345-12186425 0.00072 61_[+1]_11 chrIV:5590262-5590342 0.00072 5_[+1]_67 chrII:9241735-9241815 0.00072 14_[+1]_58 chrIII:9511223-9511303 0.00072 71_[+1]_1 chrX:16550677-16550757 0.00072 45_[+1]_27 chrIV:1923856-1923936 0.00072 43_[+1]_29 chrIV:8240972-8241052 0.00077 71_[+1]_1 chrIII:3377891-3377971 0.00081 25_[+1]_47 chrI:3103248-3103328 0.00081 61_[+1]_11 chrIII:11847766-11847846 0.00095 28_[+1]_44 chrX:7636140-7636220 0.00095 68_[+1]_4 chrIII:4950528-4950608 0.00095 23_[+1]_49 chrX:4219645-4219725 0.00095 47_[+1]_25 chrIII:4899281-4899361 0.00095 58_[+1]_14 chrV:10940100-10940180 0.00095 13_[+1]_59 chrIV:14609924-14610004 0.00095 15_[+1]_57 chrII:12053026-12053106 0.0011 58_[+1]_14 chrIV:4405314-4405394 0.0011 64_[+1]_8 chrII:13166004-13166084 0.0011 40_[+1]_32 chrI:11871856-11871936 0.0013 22_[+1]_50 chrX:7437132-7437212 0.0013 49_[+1]_23 chrIII:4412285-4412365 0.0013 54_[+1]_18 chrIII:5380095-5380175 0.0013 19_[+1]_53 chrII:2805077-2805157 0.0013 10_[+1]_62 chrV:10722803-10722883 0.0013 23_[+1]_49 chrII:10019819-10019899 0.0014 39_[+1]_33 chrIII:6452875-6452955 0.0014 44_[+1]_28 chrX:12668239-12668319 0.0014 65_[+1]_7 chrX:16732349-16732429 0.0014 44_[+1]_28 chrIV:7166719-7166799 0.0014 68_[+1]_4 chrV:903648-903728 0.0016 41_[+1]_31 chrIV:7023972-7024052 0.0016 20_[+1]_52 chrI:8787793-8787873 0.0016 63_[+1]_9 chrIV:11487983-11488063 0.0016 51_[+1]_21 chrIV:11523895-11523975 0.0016 43_[+1]_29 chrIII:6603334-6603414 0.0016 66_[+1]_6 chrX:14946850-14946930 0.0017 60_[+1]_12 chrIII:9353938-9354018 0.0017 65_[+1]_7 chrIII:5373068-5373148 0.0017 13_[+1]_59 chrIII:2816704-2816784 0.0017 30_[+1]_42 chrV:10441666-10441746 0.0017 40_[+1]_32 chrI:2125295-2125375 0.0017 12_[+1]_60 chrX:12444599-12444679 0.0017 64_[+1]_8 chrI:1687798-1687878 0.0018 21_[+1]_51 chrII:15209443-15209523 0.0018 71_[+1]_1 chrX:15380031-15380111 0.0021 59_[+1]_13 chrIV:10843104-10843184 0.0021 9_[+1]_63 chrV:19428262-19428342 0.0021 32_[+1]_40 chrII:6830208-6830288 0.0021 56_[+1]_16 chrI:1695194-1695274 0.0021 62_[+1]_10 chrIII:6962214-6962294 0.0021 59_[+1]_13 chrX:14947425-14947505 0.0021 23_[+1]_49 chrX:12875844-12875924 0.0022 56_[+1]_16 chrI:11674368-11674448 0.0024 33_[+1]_39 chrIV:2603843-2603923 0.0024 19_[+1]_53 chrV:12512916-12512996 0.0024 5_[+1]_67 chrII:9156391-9156471 0.0024 16_[+1]_56 chrIII:9580642-9580722 0.0024 55_[+1]_17 chrIV:4216304-4216384 0.0024 17_[+1]_55 chrII:6561552-6561632 0.0024 35_[+1]_37 chrI:8013513-8013593 0.0026 37_[+1]_35 chrI:3316696-3316776 0.0026 7_[+1]_65 chrV:19620265-19620345 0.0029 23_[+1]_49 chrIII:9391120-9391200 0.0031 50_[+1]_22 chrIV:12040605-12040685 0.0031 68_[+1]_4 chrX:16793643-16793723 0.0033 51_[+1]_21 chrII:9807739-9807819 0.0033 53_[+1]_19 chrV:10536301-10536381 0.0036 18_[+1]_54 chrV:13300647-13300727 0.0036 38_[+1]_34 chrIII:2089577-2089657 0.0036 20_[+1]_52 chrIII:7719527-7719607 0.0036 29_[+1]_43 chrV:4847608-4847688 0.0038 62_[+1]_10 chrI:9313712-9313792 0.0038 6_[+1]_66 chrX:13328202-13328282 0.0041 21_[+1]_51 chrI:395263-395343 0.0041 20_[+1]_52 chrV:10247154-10247234 0.0047 62_[+1]_10 chrX:11478916-11478996 0.0047 11_[+1]_61 chrX:9540594-9540674 0.005 53_[+1]_19 chrV:20417970-20418050 0.005 48_[+1]_24 chrX:16775640-16775720 0.0053 59_[+1]_13 chrIII:3637379-3637459 0.0059 53_[+1]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCACGTGA width=8 seqs=211 chrX:10630242-10630322 ( 39) TCACGTGA 1 chrX:5715531-5715611 ( 27) TCACGTGA 1 chrI:10560507-10560587 ( 9) TCACGTGA 1 chrIV:16171474-16171554 ( 62) TCACGTGA 1 chrX:13225248-13225328 ( 64) TCACGTGA 1 chrX:10688556-10688636 ( 58) TCACGTGA 1 chrII:9647299-9647379 ( 37) TCACGTGA 1 chrV:10723401-10723481 ( 65) TCACGTGA 1 chrX:5645830-5645910 ( 3) TCACGTGA 1 chrIII:4849895-4849975 ( 37) TCACGTGA 1 chrII:15195502-15195582 ( 49) ACACGTGA 1 chrIII:402283-402363 ( 6) ACACGTGA 1 chrI:5626493-5626573 ( 44) ACACGTGA 1 chrX:13603973-13604053 ( 39) ACACGTGA 1 chrIII:13056894-13056974 ( 41) ACACGTGA 1 chrV:2212083-2212163 ( 8) ACACGTGA 1 chrIII:7375062-7375142 ( 34) ACACGTGA 1 chrIII:11774651-11774731 ( 17) TCACGTGC 1 chrII:11611637-11611717 ( 48) TCACGTGC 1 chrI:1701870-1701950 ( 41) TCACGTGC 1 chrIII:6169043-6169123 ( 62) TCACGTGC 1 chrX:11469782-11469862 ( 45) TCACGTGC 1 chrIII:11989982-11990062 ( 6) TCACGTGC 1 chrX:2316341-2316421 ( 11) TCATGTGA 1 chrX:2802936-2803016 ( 38) TCATGTGA 1 chrX:2858555-2858635 ( 34) TCATGTGA 1 chrI:4489549-4489629 ( 43) TCACATGA 1 chrIV:14413535-14413615 ( 41) CCACGTGA 1 chrIV:17442688-17442768 ( 27) TCATGTGA 1 chrX:13367111-13367191 ( 2) TCACGTGT 1 chrX:1026840-1026920 ( 64) TCACGTGT 1 chrI:110067-110147 ( 64) TCACATGA 1 chrIV:8146356-8146436 ( 46) TCACGTGT 1 chrII:4090941-4091021 ( 7) TCACATGA 1 chrIII:12565909-12565989 ( 45) TCATGTGA 1 chrII:13672216-13672296 ( 68) CCACGTGA 1 chrIII:3977143-3977223 ( 64) TCATGTGA 1 chrV:13412078-13412158 ( 14) TCATGTGA 1 chrI:9736391-9736471 ( 47) TCACGTGT 1 chrV:1771890-1771970 ( 33) TCATGTGA 1 chrX:13383427-13383507 ( 2) TCACATGA 1 chrV:19524784-19524864 ( 60) TCATGTGA 1 chrX:10628582-10628662 ( 54) CCACGTGA 1 chrIII:5939657-5939737 ( 30) TCACATGA 1 chrV:13336074-13336154 ( 60) TCACGTGT 1 chrV:2231091-2231171 ( 49) TCATGTGA 1 chrIII:5877038-5877118 ( 40) TCACGTGG 1 chrI:8640355-8640435 ( 33) TCACGTGG 1 chrIV:7908907-7908987 ( 16) TCACGTGG 1 chrV:16594672-16594752 ( 23) TCACGAGA 1 chrV:12066019-12066099 ( 6) TCACGAGA 1 chrX:927764-927844 ( 39) TCACGAGA 1 chrIV:6522503-6522583 ( 54) TCACGAGA 1 chrX:1479787-1479867 ( 55) GCACGTGA 1 chrV:10020125-10020205 ( 66) GCACGTGA 1 chrIV:11636451-11636531 ( 62) GCACGTGA 1 chrIII:5937097-5937177 ( 23) TCTCGTGA 1 chrI:8869258-8869338 ( 50) TCTCGTGA 1 chrI:9438014-9438094 ( 52) TCTCGTGA 1 chrX:4266619-4266699 ( 64) TCTCGTGA 1 chrIII:5685612-5685692 ( 62) ACACGTGC 1 chrV:8425317-8425397 ( 18) ACACATGA 1 chrIII:9666404-9666484 ( 34) ACATGTGA 1 chrIV:13521930-13522010 ( 3) ACACATGA 1 chrIV:1035277-1035357 ( 40) ACACATGA 1 chrII:5020859-5020939 ( 44) ACATGTGA 1 chrII:4296464-4296544 ( 24) ACATGTGA 1 chrIII:620467-620547 ( 15) ACATGTGA 1 chrIV:10821453-10821533 ( 4) ACATGTGA 1 chrIII:3703525-3703605 ( 27) TCACATGC 1 chrII:5942726-5942806 ( 35) TCATGTGC 1 chrI:10760430-10760510 ( 4) TCATGTGC 1 chrIV:5089136-5089216 ( 2) ACACGTGG 1 chrIV:13880984-13881064 ( 59) ACACGTGG 1 chrV:8014157-8014237 ( 22) TCATGTGC 1 chrV:5845344-5845424 ( 52) TCACATGC 1 chrI:9173211-9173291 ( 22) TCACATGC 1 chrX:14500029-14500109 ( 60) TCACATGC 1 chrX:11662213-11662293 ( 25) CCACGTGC 1 chrIII:1682456-1682536 ( 58) TCAGGTGA 1 chrI:13812425-13812505 ( 22) ACACGAGA 1 chrI:2689458-2689538 ( 25) TCAGGTGA 1 chrV:10870239-10870319 ( 10) ACACGAGA 1 chrI:1689028-1689108 ( 9) TCAGGTGA 1 chrV:7848411-7848491 ( 25) ACACGAGA 1 chrX:3102303-3102383 ( 70) ACACGAGA 1 chrIV:13413156-13413236 ( 28) ACACGAGA 1 chrIII:11836874-11836954 ( 16) ACACGAGA 1 chrII:11830802-11830882 ( 17) ACACGAGA 1 chrV:1467075-1467155 ( 41) ACACGAGA 1 chrV:10715325-10715405 ( 54) ACACGAGA 1 chrV:10467413-10467493 ( 6) CCATGTGA 1 chrI:14642683-14642763 ( 59) TCACATGT 1 chrX:2840432-2840512 ( 65) TCACATGT 1 chrIV:8225522-8225602 ( 44) CCACGTGT 1 chrIII:8761404-8761484 ( 2) TCATATGA 1 chrIV:11897828-11897908 ( 44) CCACATGA 1 chrII:9622002-9622082 ( 16) TCACGAGC 1 chrIV:5602546-5602626 ( 32) CCATGTGA 1 chrX:15564483-15564563 ( 37) CCATGTGA 1 chrIV:8232577-8232657 ( 52) TCATGTGT 1 chrIV:2773558-2773638 ( 42) TCATATGA 1 chrIV:17333658-17333738 ( 30) CCACATGA 1 chrX:726418-726498 ( 62) TCATGTGT 1 chrX:14503983-14504063 ( 40) TCACATGT 1 chrX:16218459-16218539 ( 31) TCACATGT 1 chrIII:6359606-6359686 ( 42) TCATATGA 1 chrI:8784116-8784196 ( 21) TCATGTGT 1 chrX:10231061-10231141 ( 24) CCACGTGT 1 chrIII:13360786-13360866 ( 19) TCATATGA 1 chrII:5874301-5874381 ( 21) TCACATGG 1 chrII:4726290-4726370 ( 63) GCACGTGC 1 chrIII:8732110-8732190 ( 39) CCACGTGG 1 chrX:8026894-8026974 ( 39) TCACATGG 1 chrV:20004701-20004781 ( 31) TCACATGG 1 chrV:2278188-2278268 ( 63) TCATGTGG 1 chrII:12823567-12823647 ( 10) TCACGAGT 1 chrII:10547905-10547985 ( 26) TCACAAGA 1 chrIII:9827340-9827420 ( 13) TCACAAGA 1 chrIV:2412732-2412812 ( 1) TCATGAGA 1 chrX:2970346-2970426 ( 11) CCACGAGA 1 chrV:20419802-20419882 ( 62) ACTCGTGA 1 chrIV:7291215-7291295 ( 22) TCACGAGG 1 chrV:8609879-8609959 ( 16) GCATGTGA 1 chrV:6348298-6348378 ( 36) GCACGTGT 1 chrX:13147261-13147341 ( 15) GCACGTGG 1 chrII:1310318-1310398 ( 66) GCACGTGG 1 chrI:3722701-3722781 ( 40) GCACGTGG 1 chrI:10514026-10514106 ( 73) TCTCATGA 1 chrX:2972568-2972648 ( 25) CCTCGTGA 1 chrX:12186345-12186425 ( 62) CCTCGTGA 1 chrIV:5590262-5590342 ( 6) TCTCATGA 1 chrII:9241735-9241815 ( 15) ACACCTGA 1 chrIII:9511223-9511303 ( 72) CCTCGTGA 1 chrX:16550677-16550757 ( 46) TCTCATGA 1 chrIV:1923856-1923936 ( 44) CCTCGTGA 1 chrIV:8240972-8241052 ( 72) TCTCGTGG 1 chrIII:3377891-3377971 ( 26) TCACGGGA 1 chrI:3103248-3103328 ( 62) TCTCGAGA 1 chrIII:11847766-11847846 ( 29) TCATCTGA 1 chrX:7636140-7636220 ( 69) CCACCTGA 1 chrIII:4950528-4950608 ( 24) TCATCTGA 1 chrX:4219645-4219725 ( 48) CCACCTGA 1 chrIII:4899281-4899361 ( 59) CCACCTGA 1 chrV:10940100-10940180 ( 14) TCATCTGA 1 chrIV:14609924-14610004 ( 16) ACATATGA 1 chrII:12053026-12053106 ( 59) TCACCAGA 1 chrIV:4405314-4405394 ( 65) TCAGATGA 1 chrII:13166004-13166084 ( 41) ACACAAGA 1 chrI:11871856-11871936 ( 23) TCATATGT 1 chrX:7437132-7437212 ( 50) TCATATGT 1 chrIII:4412285-4412365 ( 55) ACTCGTGC 1 chrIII:5380095-5380175 ( 20) ACTCGTGC 1 chrII:2805077-2805157 ( 11) TCAGGTGG 1 chrV:10722803-10722883 ( 24) CCATATGA 1 chrII:10019819-10019899 ( 40) TCATATGG 1 chrIII:6452875-6452955 ( 45) TCATATGG 1 chrX:12668239-12668319 ( 66) TCAGGAGA 1 chrX:16732349-16732429 ( 45) GCACATGC 1 chrIV:7166719-7166799 ( 69) GCATGTGC 1 chrV:903648-903728 ( 42) ACTCGTGT 1 chrIV:7023972-7024052 ( 21) TCATGAGT 1 chrI:8787793-8787873 ( 64) ACTCGTGT 1 chrIV:11487983-11488063 ( 52) GCAGGTGA 1 chrIV:11523895-11523975 ( 44) ACTCATGA 1 chrIII:6603334-6603414 ( 67) TCACAAGT 1 chrX:14946850-14946930 ( 61) ACACCTGC 1 chrIII:9353938-9354018 ( 66) TCACGCGC 1 chrIII:5373068-5373148 ( 14) TCACAAGG 1 chrIII:2816704-2816784 ( 31) CCTCGTGC 1 chrV:10441666-10441746 ( 41) TCTCATGC 1 chrI:2125295-2125375 ( 13) TCTCATGC 1 chrX:12444599-12444679 ( 65) GCACATGT 1 chrI:1687798-1687878 ( 22) ACTCGAGA 1 chrII:15209443-15209523 ( 72) ACTCGAGA 1 chrX:15380031-15380111 ( 60) GCACGAGT 1 chrIV:10843104-10843184 ( 10) GCACGAGT 1 chrV:19428262-19428342 ( 33) TCACGCGT 1 chrII:6830208-6830288 ( 57) TCACGCGT 1 chrI:1695194-1695274 ( 63) ACACCTGT 1 chrIII:6962214-6962294 ( 60) TCACACGA 1 chrX:14947425-14947505 ( 24) ACACCTGT 1 chrX:12875844-12875924 ( 57) CCTCGTGG 1 chrI:11674368-11674448 ( 34) TCAGCTGA 1 chrIV:2603843-2603923 ( 20) TCAGCTGA 1 chrV:12512916-12512996 ( 6) TCAGCTGA 1 chrII:9156391-9156471 ( 17) TCATGGGA 1 chrIII:9580642-9580722 ( 56) TCACGGGT 1 chrIV:4216304-4216384 ( 18) TCATGGGA 1 chrII:6561552-6561632 ( 36) TCAGCTGA 1 chrI:8013513-8013593 ( 38) GCTCATGA 1 chrI:3316696-3316776 ( 8) ACAGGTGG 1 chrV:19620265-19620345 ( 24) ACATGAGT 1 chrIII:9391120-9391200 ( 51) CCATGAGC 1 chrIV:12040605-12040685 ( 69) ACTTGTGC 1 chrX:16793643-16793723 ( 52) AGACGTGA 1 chrII:9807739-9807819 ( 54) TCGCGTGT 1 chrV:10536301-10536381 ( 19) TGACGTGC 1 chrV:13300647-13300727 ( 39) CCATGAGT 1 chrIII:2089577-2089657 ( 21) TCGCGTGG 1 chrIII:7719527-7719607 ( 30) TCACTTGA 1 chrV:4847608-4847688 ( 63) TCTTATGC 1 chrI:9313712-9313792 ( 7) CCACGCGC 1 chrX:13328202-13328282 ( 22) TGACATGA 1 chrI:395263-395343 ( 21) GCGCGTGA 1 chrV:10247154-10247234 ( 63) GCACGCGC 1 chrX:11478916-11478996 ( 12) TCTTATGG 1 chrX:9540594-9540674 ( 54) ACATCAGA 1 chrV:20417970-20418050 ( 49) TCAGCTGT 1 chrX:16775640-16775720 ( 60) CCTCGAGG 1 chrIII:3637379-3637459 ( 54) GCACGGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 6.96821 E= 7.2e-088 -34 -79 -130 100 -1437 216 -396 -1437 161 -1437 -396 -98 -1437 165 -185 -22 -22 -146 161 -589 -69 -296 -322 147 -1437 -1437 217 -1437 104 -54 -96 -76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 211 E= 7.2e-088 0.218009 0.127962 0.090047 0.563981 0.000000 0.985782 0.014218 0.000000 0.843602 0.000000 0.014218 0.142180 0.000000 0.696682 0.061611 0.241706 0.236967 0.080569 0.677725 0.004739 0.170616 0.028436 0.023697 0.777251 0.000000 0.000000 1.000000 0.000000 0.568720 0.151659 0.113744 0.165877 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-1 regular expression -------------------------------------------------------------------------------- [TA]CA[CT][GA]TGA -------------------------------------------------------------------------------- Time 4.70 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCKTCT MEME-2 width = 8 sites = 33 llr = 285 E-value = 7.6e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCKTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::1: pos.-specific C a1:a::91 probability G :17:61:: matrix T :83:49:9 bits 2.2 * 2.0 * * 1.7 * * * 1.5 * * *** Relative 1.3 * ** *** Entropy 1.1 ******** (12.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCKTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:1906953-1907033 60 1.18e-05 CCCCATCGGT CTGCGTCT CTCTATCACG chrV:19666466-19666546 59 1.18e-05 CTTTTTCTGT CTGCGTCT CGCATCACAG chrIII:3703525-3703605 62 1.18e-05 CTTCCATTCT CTGCGTCT CTCTCCTTCT chrV:20417970-20418050 8 1.18e-05 AGCCACT CTGCGtct ctctctctct chrIII:9391120-9391200 5 1.18e-05 CTCT CTGCGTCT CTTTACTTTC chrI:5626493-5626573 22 1.18e-05 GCTAGTGCGT CTGCGTCT TCCTCTCTCT chrV:10020125-10020205 6 1.18e-05 GATGT CTGCGTCT CTAAGTTGTC chrIII:2089577-2089657 69 1.18e-05 CTTTGGTTGT CTGCGTCT CTCC chrIV:7166719-7166799 41 1.18e-05 CTCGAAATGC CTGCGTCT CATTCTCTTG chrX:16218459-16218539 15 1.18e-05 AAGCACATGT CTGCGTCT CTCACATGTC chrX:14947425-14947505 10 1.18e-05 TTAACATTC CTGCGTCT CTAGGTACAC chrV:2231091-2231171 8 1.18e-05 TTACACC CTGCGTCT CTCCATGTCT chrV:19620265-19620345 45 1.18e-05 TTTCGGTTTT CTGCGTCT CTTCGTCTTA chrIII:4950528-4950608 32 2.67e-05 GGTCATCTGA CTGCTTCT CTCTTTTTTT chrI:10760430-10760510 17 6.99e-05 TGTGCttctt cttcttct tcatcttttt chrII:6830208-6830288 40 6.99e-05 ttctacgcca cttcttct AATTCCTTGT chrI:9438014-9438094 4 6.99e-05 GAG CTTCTTCT CCATCCTCTC chrI:8013513-8013593 22 6.99e-05 cttcatcttc cttcttct tgcttATGGC chrII:15209443-15209523 3 6.99e-05 tg cttcttct gctgctgctg chrV:19524784-19524864 14 6.99e-05 CCCCGAGCTT CTTCTTCT TCTTCCAAAA chrIII:7719527-7719607 12 6.99e-05 TCTCTTAACT CTTCTTCT TTTCCCACTG chrX:17631834-17631914 15 9.78e-05 GTCGATGTGT CTGCGTCC CTGCACCCGC chrIV:7023972-7024052 66 9.78e-05 GTCTTCATCT CTGCGGCT ATGAAAA chrIII:11989982-11990062 24 9.78e-05 CTTTTCACAC CTGCGTCC TCTACCTTTT chrX:6515353-6515433 45 1.10e-04 ATATCGTACA CGGCTTCT TCGAGACAGA chrIV:8146356-8146436 33 1.24e-04 GTGTAACCTC CTGCGTAT CTCAATCACG chrIV:7291215-7291295 4 1.24e-04 TGT CTGCGTAT CTTACAGACA chrI:9736391-9736471 32 1.36e-04 CATGATCACC CCGCTTCT CATGTTATCA chrV:10723401-10723481 57 1.36e-04 CTCTCACCAC CCGCTTCT TCACGTGACG chrIII:9666404-9666484 68 1.71e-04 GGCCAAAGTG CTGCTGCT GAGAC chrIV:8232577-8232657 28 1.71e-04 CTCGCTTCAA CGTCGTCT TGTGGTGGCG chrIII:4849895-4849975 28 1.71e-04 TTCAGGCTTG CGTCGTCT ATCACGTGAA chrX:4219645-4219725 56 2.40e-04 CGCCACCTGA CTGAGTCT TTCCTGTCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCKTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1906953-1907033 1.2e-05 59_[+2]_13 chrV:19666466-19666546 1.2e-05 58_[+2]_14 chrIII:3703525-3703605 1.2e-05 61_[+2]_11 chrV:20417970-20418050 1.2e-05 7_[+2]_65 chrIII:9391120-9391200 1.2e-05 4_[+2]_68 chrI:5626493-5626573 1.2e-05 21_[+2]_51 chrV:10020125-10020205 1.2e-05 5_[+2]_67 chrIII:2089577-2089657 1.2e-05 68_[+2]_4 chrIV:7166719-7166799 1.2e-05 40_[+2]_32 chrX:16218459-16218539 1.2e-05 14_[+2]_58 chrX:14947425-14947505 1.2e-05 9_[+2]_63 chrV:2231091-2231171 1.2e-05 7_[+2]_65 chrV:19620265-19620345 1.2e-05 44_[+2]_28 chrIII:4950528-4950608 2.7e-05 31_[+2]_41 chrI:10760430-10760510 7e-05 16_[+2]_56 chrII:6830208-6830288 7e-05 39_[+2]_33 chrI:9438014-9438094 7e-05 3_[+2]_69 chrI:8013513-8013593 7e-05 21_[+2]_51 chrII:15209443-15209523 7e-05 2_[+2]_70 chrV:19524784-19524864 7e-05 13_[+2]_59 chrIII:7719527-7719607 7e-05 11_[+2]_61 chrX:17631834-17631914 9.8e-05 14_[+2]_58 chrIV:7023972-7024052 9.8e-05 65_[+2]_7 chrIII:11989982-11990062 9.8e-05 23_[+2]_49 chrX:6515353-6515433 0.00011 44_[+2]_28 chrIV:8146356-8146436 0.00012 32_[+2]_40 chrIV:7291215-7291295 0.00012 3_[+2]_69 chrI:9736391-9736471 0.00014 31_[+2]_41 chrV:10723401-10723481 0.00014 56_[+2]_16 chrIII:9666404-9666484 0.00017 67_[+2]_5 chrIV:8232577-8232657 0.00017 27_[+2]_45 chrIII:4849895-4849975 0.00017 27_[+2]_45 chrX:4219645-4219725 0.00024 55_[+2]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCKTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCKTCT width=8 seqs=33 chrIV:1906953-1907033 ( 60) CTGCGTCT 1 chrV:19666466-19666546 ( 59) CTGCGTCT 1 chrIII:3703525-3703605 ( 62) CTGCGTCT 1 chrV:20417970-20418050 ( 8) CTGCGTCT 1 chrIII:9391120-9391200 ( 5) CTGCGTCT 1 chrI:5626493-5626573 ( 22) CTGCGTCT 1 chrV:10020125-10020205 ( 6) CTGCGTCT 1 chrIII:2089577-2089657 ( 69) CTGCGTCT 1 chrIV:7166719-7166799 ( 41) CTGCGTCT 1 chrX:16218459-16218539 ( 15) CTGCGTCT 1 chrX:14947425-14947505 ( 10) CTGCGTCT 1 chrV:2231091-2231171 ( 8) CTGCGTCT 1 chrV:19620265-19620345 ( 45) CTGCGTCT 1 chrIII:4950528-4950608 ( 32) CTGCTTCT 1 chrI:10760430-10760510 ( 17) CTTCTTCT 1 chrII:6830208-6830288 ( 40) CTTCTTCT 1 chrI:9438014-9438094 ( 4) CTTCTTCT 1 chrI:8013513-8013593 ( 22) CTTCTTCT 1 chrII:15209443-15209523 ( 3) CTTCTTCT 1 chrV:19524784-19524864 ( 14) CTTCTTCT 1 chrIII:7719527-7719607 ( 12) CTTCTTCT 1 chrX:17631834-17631914 ( 15) CTGCGTCC 1 chrIV:7023972-7024052 ( 66) CTGCGGCT 1 chrIII:11989982-11990062 ( 24) CTGCGTCC 1 chrX:6515353-6515433 ( 45) CGGCTTCT 1 chrIV:8146356-8146436 ( 33) CTGCGTAT 1 chrIV:7291215-7291295 ( 4) CTGCGTAT 1 chrI:9736391-9736471 ( 32) CCGCTTCT 1 chrV:10723401-10723481 ( 57) CCGCTTCT 1 chrIII:9666404-9666484 ( 68) CTGCTGCT 1 chrIV:8232577-8232657 ( 28) CGTCGTCT 1 chrIII:4849895-4849975 ( 28) CGTCGTCT 1 chrX:4219645-4219725 ( 56) CTGAGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCKTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.87609 E= 7.6e-005 -1169 218 -1169 -1169 -1169 -187 -128 159 -1169 -1169 171 -5 -318 213 -1169 -1169 -1169 -1169 152 37 -1169 -1169 -187 174 -218 209 -1169 -1169 -1169 -187 -1169 174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCKTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 7.6e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.060606 0.090909 0.848485 0.000000 0.000000 0.727273 0.272727 0.030303 0.969697 0.000000 0.000000 0.000000 0.000000 0.636364 0.363636 0.000000 0.000000 0.060606 0.939394 0.060606 0.939394 0.000000 0.000000 0.000000 0.060606 0.000000 0.939394 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCKTCT MEME-2 regular expression -------------------------------------------------------------------------------- CT[GT]C[GT]TCT -------------------------------------------------------------------------------- Time 7.87 secs. ******************************************************************************** ******************************************************************************** MOTIF AGACGCAG MEME-3 width = 8 sites = 25 llr = 226 E-value = 1.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:a:3:a: pos.-specific C :1:a:9:: probability G :9::61:8 matrix T ::::1::2 bits 2.2 2.0 * ** * 1.7 **** ** 1.5 **** ** Relative 1.3 **** *** Entropy 1.1 **** *** (13.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGACGCAG consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:11871856-11871936 66 1.12e-05 AGTGCCAGAG AGACGCAG ACATACG chrIV:2603843-2603923 42 1.12e-05 GGCATAGAAG AGACGCAG ACACACCTAC chrII:5874301-5874381 39 1.12e-05 TTTTACATGT AGACGCAG AGACAATCGT chrV:903648-903728 21 1.12e-05 GTCTGGTGAG AGACGCAG ACAGCGAGGG chrIII:13626851-13626931 60 1.12e-05 TGCTCTGAGA AGACGCAG ACCTCACCAC chrIV:17333658-17333738 50 1.12e-05 TAGAGTGAAG AGACGCAG CTATTGAAGA chrV:2212083-2212163 62 1.12e-05 ACGTGCCGAG AGACGCAG ACTGTTGAAG chrIV:13413156-13413236 51 1.12e-05 CGCCTTCTGG AGACGCAG ACGCGCAAGC chrIII:4849895-4849975 59 1.12e-05 GGGGAGAGCA AGACGCAG AGATGGAAAG chrIV:2412732-2412812 73 1.12e-05 AGATAATACG AGACGCAG chrII:9647299-9647379 11 2.52e-05 GAGAGAATGG AGACACAG GCACGGGTGT chrV:6348298-6348378 28 2.52e-05 CGAGACGAAA AGACACAG GCACGTGTCT chrIV:12040605-12040685 50 3.94e-05 GACAAATGAG AGACGCAT GATAAGGGCC chrV:1467075-1467155 70 3.94e-05 ATAGAGAGTG AGACGCAT TGC chrV:635799-635879 54 5.06e-05 ACCTCGCTGG ACACGCAG AGTGTGAGAG chrX:9540594-9540674 34 6.48e-05 GCGAAAATAG AGACTCAG ACAGCTGCAG chrIII:5380095-5380175 72 6.48e-05 TGCTGACCGG AGACTCAG A chrIV:16171474-16171554 47 9.38e-05 GAAAAACGAG AGACACAT GCGTTTTTCA chrV:10870239-10870319 34 9.38e-05 GATCGAGAGT AGACGGAG CAAGAGAAAC chrV:4847608-4847688 44 9.38e-05 GAGAGAACGC AGACACAT AAACAACAAT chrX:14503983-14504063 9 9.38e-05 GTGAGCGC AGACACAT TTGAAACTGC chrIII:6603334-6603414 59 1.08e-04 AATATTTCTC ACACACAG TCACAAGTCT chrX:16793643-16793723 16 1.19e-04 GTAGAAAACG AGAGGCAG CGTTGTTGTT chrV:13412078-13412158 29 1.33e-04 TGAATGTGTG ACACGCAT TGTCATCATC chrIII:6948086-6948166 1 1.47e-04 . AGACAGAG AGAAAAAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11871856-11871936 1.1e-05 65_[+3]_7 chrIV:2603843-2603923 1.1e-05 41_[+3]_31 chrII:5874301-5874381 1.1e-05 38_[+3]_34 chrV:903648-903728 1.1e-05 20_[+3]_52 chrIII:13626851-13626931 1.1e-05 59_[+3]_13 chrIV:17333658-17333738 1.1e-05 49_[+3]_23 chrV:2212083-2212163 1.1e-05 61_[+3]_11 chrIV:13413156-13413236 1.1e-05 50_[+3]_22 chrIII:4849895-4849975 1.1e-05 58_[+3]_14 chrIV:2412732-2412812 1.1e-05 72_[+3] chrII:9647299-9647379 2.5e-05 10_[+3]_62 chrV:6348298-6348378 2.5e-05 27_[+3]_45 chrIV:12040605-12040685 3.9e-05 49_[+3]_23 chrV:1467075-1467155 3.9e-05 69_[+3]_3 chrV:635799-635879 5.1e-05 53_[+3]_19 chrX:9540594-9540674 6.5e-05 33_[+3]_39 chrIII:5380095-5380175 6.5e-05 71_[+3]_1 chrIV:16171474-16171554 9.4e-05 46_[+3]_26 chrV:10870239-10870319 9.4e-05 33_[+3]_39 chrV:4847608-4847688 9.4e-05 43_[+3]_29 chrX:14503983-14504063 9.4e-05 8_[+3]_64 chrIII:6603334-6603414 0.00011 58_[+3]_14 chrX:16793643-16793723 0.00012 15_[+3]_57 chrV:13412078-13412158 0.00013 28_[+3]_44 chrIII:6948086-6948166 0.00015 [+3]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGACGCAG width=8 seqs=25 chrI:11871856-11871936 ( 66) AGACGCAG 1 chrIV:2603843-2603923 ( 42) AGACGCAG 1 chrII:5874301-5874381 ( 39) AGACGCAG 1 chrV:903648-903728 ( 21) AGACGCAG 1 chrIII:13626851-13626931 ( 60) AGACGCAG 1 chrIV:17333658-17333738 ( 50) AGACGCAG 1 chrV:2212083-2212163 ( 62) AGACGCAG 1 chrIV:13413156-13413236 ( 51) AGACGCAG 1 chrIII:4849895-4849975 ( 59) AGACGCAG 1 chrIV:2412732-2412812 ( 73) AGACGCAG 1 chrII:9647299-9647379 ( 11) AGACACAG 1 chrV:6348298-6348378 ( 28) AGACACAG 1 chrIV:12040605-12040685 ( 50) AGACGCAT 1 chrV:1467075-1467155 ( 70) AGACGCAT 1 chrV:635799-635879 ( 54) ACACGCAG 1 chrX:9540594-9540674 ( 34) AGACTCAG 1 chrIII:5380095-5380175 ( 72) AGACTCAG 1 chrIV:16171474-16171554 ( 47) AGACACAT 1 chrV:10870239-10870319 ( 34) AGACGGAG 1 chrV:4847608-4847688 ( 44) AGACACAT 1 chrX:14503983-14504063 ( 9) AGACACAT 1 chrIII:6603334-6603414 ( 59) ACACACAG 1 chrX:16793643-16793723 ( 16) AGAGGCAG 1 chrV:13412078-13412158 ( 29) ACACGCAT 1 chrIII:6948086-6948166 ( 1) AGACAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6437 E= 1.4e-003 186 -1129 -1129 -1129 -1129 -88 199 -1129 186 -1129 -1129 -1129 -1129 212 -247 -1129 2 -1129 153 -181 -1129 206 -147 -1129 186 -1129 -1129 -1129 -1129 -1129 178 -23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.4e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.120000 0.880000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.960000 0.040000 0.000000 0.280000 0.000000 0.640000 0.080000 0.000000 0.920000 0.080000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.760000 0.240000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 regular expression -------------------------------------------------------------------------------- AGAC[GA]CA[GT] -------------------------------------------------------------------------------- Time 12.29 secs. ******************************************************************************** ******************************************************************************** MOTIF MRARAAAA MEME-4 width = 8 sites = 63 llr = 467 E-value = 2.8e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif MRARAAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 6674a8aa pos.-specific C 3:3::::: probability G 14:6:2:: matrix T :::::::: bits 2.2 2.0 * ** 1.7 * ** 1.5 * ** Relative 1.3 **** Entropy 1.1 ******* (10.7 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAGAAAA consensus CGCA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRARAAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12186345-12186425 48 2.71e-05 GAAAAAAACG AAAGAAAA AAGGTTCCTC chrI:13812425-13812505 69 2.71e-05 TGCAGTTTGC AAAGAAAA TTCA chrI:110067-110147 46 2.71e-05 CGATTGTAAA AAAGAAAA AGGGCATTGG chrX:927764-927844 17 2.71e-05 CTATGATTGA AAAGAAAA GTGAATCGAA chrIII:4849895-4849975 73 2.71e-05 GCAGAGATGG AAAGAAAA chrI:6077281-6077361 55 4.89e-05 Aagagatata agagaaaa taagtgagag chrX:6515353-6515433 11 4.89e-05 CGAGGCAGAC AGAGAAAA TGAGAGAGAC chrII:9214666-9214746 25 4.89e-05 TTCGAGACGT AGAGAAAA ACAGAAAAAC chrX:7437132-7437212 61 4.89e-05 CATATGTGGG AGAGAAAA GAGACAAAAG chrII:13640364-13640444 62 4.89e-05 agagagatag agagaAAA ACAAAAGACG chrIII:6169043-6169123 3 4.89e-05 AT AGAGAAAA GAGAAGCAAA chrI:395263-395343 50 4.89e-05 AAAGGAGGCG AGAGAAAA CGGCTGACCC chrI:6380910-6380990 54 4.89e-05 CCTCTCAGTG AGAGAAAA ATACAACAAA chrIII:13360786-13360866 4 4.89e-05 GCG AGAGAAAA AGATAAATCA chrIV:8240972-8241052 53 7.06e-05 CAAAAATCTG CAAGAAAA TCAAATCACT chrI:10514026-10514106 37 7.06e-05 CTGATTTTAT CAAGAAAA ACGGTTCTGA chrII:9241735-9241815 23 7.06e-05 GAACACCTGA CAAGAAAA GATCATAAGA chrII:1310318-1310398 38 7.06e-05 CACTCCTTGA CAAGAAAA AGATGACCAA chrI:4489549-4489629 58 1.04e-04 TGATTTTGCA AAAAAAAA TTGAAATTCC chrI:2689458-2689538 51 1.04e-04 TGATAACAAG AAAAAAAA GATAATCGAC chrIII:3637379-3637459 72 1.04e-04 AAACACTGAC AAAAAAAA C chrX:4219645-4219725 33 1.04e-04 CAACTTGCCA AAAAAAAA ATGCTCGCCA chrX:15564483-15564563 5 1.04e-04 GTGG AAAAAAAA GGTTCATAAG chrIII:8331936-8332016 26 1.04e-04 TGTTGAATCG AAAAAAAA TGTGACCAGG chrX:1526039-1526119 9 1.04e-04 TGGAGGAC AAAAAAAA AGCAAAAAAA chrX:16775640-16775720 2 1.70e-04 G AGAAAAAA GTCAAAAGAT chrIV:5089136-5089216 52 1.70e-04 GAGAGAAGTG AACGAAAA AGTCACCAAC chrV:5845344-5845424 15 1.70e-04 CAATTTTCTC AACGAAAA GTGGTCACGA chrIII:11847766-11847846 7 2.15e-04 TTATTG CAAAAAAA CATTTCCGGA chrX:9540594-9540674 23 2.15e-04 TGATGAGGTA AGCGAAAA TAGAGACTCA chrIV:11897828-11897908 70 2.15e-04 GGGTAACATG AGCGAAAA CTG chrX:16732349-16732429 37 2.15e-04 CAAGTAGCGG CAAAAAAA GCACATGCTT chrX:14556583-14556663 12 2.15e-04 ATTCGTCACT CAAAAAAA CTTTTTTTTG chrIII:13056894-13056974 33 2.15e-04 AATTTTTCAA CAAAAAAA ACACGTGATC chrX:11662213-11662293 65 2.15e-04 CAGGAGGCAA CAAAAAAA GTTTGTAG chrI:10560507-10560587 65 2.54e-04 CATAGAAATA CGAAAAAA GTGATGTC chrV:8609879-8609959 52 2.54e-04 AAAGATATGC CGAAAAAA GCGACGAATA chrI:9736391-9736471 2 2.54e-04 T CGAAAAAA GATTCAATCT chrX:12668239-12668319 37 2.81e-04 AATGTTTCAA AACAAAAA GACCATTCTA chrIII:12565909-12565989 72 2.81e-04 AAAGAAGAAG AACAAAAA A chrII:13166004-13166084 13 2.81e-04 TGGTGATAAG AACAAAAA AGAATTGTGA chrIV:5605422-5605502 30 2.81e-04 AGTTGACTAC AACAAAAA CAGTCATCAG chrX:13328202-13328282 3 2.95e-04 TT CGCGAAAA GTCAGCCGAC chrX:13147261-13147341 66 2.95e-04 GGGGCACATT CGCGAAAA ACATGTT chrX:6729758-6729838 16 3.38e-04 CGAGAGGTGG AAAGAGAA ATGTAAATGC chrII:13672216-13672296 58 3.38e-04 GTGAGTGCAG AAAGAGAA TTCCACGTGA chrI:11964899-11964979 58 3.99e-04 CGTGAAAATC CACAAAAA CCAACAAAAT chrV:635799-635879 13 3.99e-04 ACGCGGCCGA CACAAAAA GCGTGTCGAA chrV:4847608-4847688 8 3.99e-04 ATGTGAT CACAAAAA GAGATAGCGT chrX:5645830-5645910 14 3.99e-04 CACGTGAAAT GAAGAAAA TGCACGCGCC chrIII:6603334-6603414 2 3.99e-04 A AGAGAGAA TACTGTGATT chrV:10870239-10870319 42 4.52e-04 GTAGACGGAG CAAGAGAA ACAAGAAAGA chrV:6348298-6348378 72 4.52e-04 AAAAATGGGT GGAGAAAA A chrII:2807831-2807911 4 4.79e-04 GAT AAAAAGAA ATGTAGCCAA chrIII:6948086-6948166 11 4.79e-04 AGACAGAGAG AAAAAGAA AGAAAGACTA chrI:3316696-3316776 52 4.93e-04 TCAAATGAAT CGAGAGAA CATGACACGA chrV:2278188-2278268 24 4.93e-04 TTGCAATTAG CGAGAGAA GGAGAAATAG chrIII:11774651-11774731 73 6.34e-04 CAGAATGCAC AGCGAGAA chrV:20004701-20004781 66 6.34e-04 ACGAGGTATT GGAAAAAA TGAGAAA chrIV:7908907-7908987 70 6.34e-04 AAATCGATAT GACGAAAA GAA chrX:1479787-1479867 13 6.79e-04 CGTGAAGGCT GGCGAAAA TTTTGACGAA chrII:10019819-10019899 4 6.79e-04 AAG GGCGAAAA TCGAGTGTTA chrV:8425317-8425397 32 7.01e-04 ATGAGCACAA AACAAGAA GCTGACACCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRARAAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12186345-12186425 2.7e-05 47_[+4]_25 chrI:13812425-13812505 2.7e-05 68_[+4]_4 chrI:110067-110147 2.7e-05 45_[+4]_27 chrX:927764-927844 2.7e-05 16_[+4]_56 chrIII:4849895-4849975 2.7e-05 72_[+4] chrI:6077281-6077361 4.9e-05 54_[+4]_18 chrX:6515353-6515433 4.9e-05 10_[+4]_62 chrII:9214666-9214746 4.9e-05 24_[+4]_48 chrX:7437132-7437212 4.9e-05 60_[+4]_12 chrII:13640364-13640444 4.9e-05 61_[+4]_11 chrIII:6169043-6169123 4.9e-05 2_[+4]_70 chrI:395263-395343 4.9e-05 49_[+4]_23 chrI:6380910-6380990 4.9e-05 53_[+4]_19 chrIII:13360786-13360866 4.9e-05 3_[+4]_69 chrIV:8240972-8241052 7.1e-05 52_[+4]_20 chrI:10514026-10514106 7.1e-05 36_[+4]_36 chrII:9241735-9241815 7.1e-05 22_[+4]_50 chrII:1310318-1310398 7.1e-05 37_[+4]_35 chrI:4489549-4489629 0.0001 57_[+4]_15 chrI:2689458-2689538 0.0001 50_[+4]_22 chrIII:3637379-3637459 0.0001 71_[+4]_1 chrX:4219645-4219725 0.0001 32_[+4]_40 chrX:15564483-15564563 0.0001 4_[+4]_68 chrIII:8331936-8332016 0.0001 25_[+4]_47 chrX:1526039-1526119 0.0001 8_[+4]_64 chrX:16775640-16775720 0.00017 1_[+4]_71 chrIV:5089136-5089216 0.00017 51_[+4]_21 chrV:5845344-5845424 0.00017 14_[+4]_58 chrIII:11847766-11847846 0.00021 6_[+4]_66 chrX:9540594-9540674 0.00021 22_[+4]_50 chrIV:11897828-11897908 0.00021 69_[+4]_3 chrX:16732349-16732429 0.00021 36_[+4]_36 chrX:14556583-14556663 0.00021 11_[+4]_61 chrIII:13056894-13056974 0.00021 32_[+4]_40 chrX:11662213-11662293 0.00021 64_[+4]_8 chrI:10560507-10560587 0.00025 64_[+4]_8 chrV:8609879-8609959 0.00025 51_[+4]_21 chrI:9736391-9736471 0.00025 1_[+4]_71 chrX:12668239-12668319 0.00028 36_[+4]_36 chrIII:12565909-12565989 0.00028 71_[+4]_1 chrII:13166004-13166084 0.00028 12_[+4]_60 chrIV:5605422-5605502 0.00028 29_[+4]_43 chrX:13328202-13328282 0.00029 2_[+4]_70 chrX:13147261-13147341 0.00029 65_[+4]_7 chrX:6729758-6729838 0.00034 15_[+4]_57 chrII:13672216-13672296 0.00034 57_[+4]_15 chrI:11964899-11964979 0.0004 57_[+4]_15 chrV:635799-635879 0.0004 12_[+4]_60 chrV:4847608-4847688 0.0004 7_[+4]_65 chrX:5645830-5645910 0.0004 13_[+4]_59 chrIII:6603334-6603414 0.0004 1_[+4]_71 chrV:10870239-10870319 0.00045 41_[+4]_31 chrV:6348298-6348378 0.00045 71_[+4]_1 chrII:2807831-2807911 0.00048 3_[+4]_69 chrIII:6948086-6948166 0.00048 10_[+4]_62 chrI:3316696-3316776 0.00049 51_[+4]_21 chrV:2278188-2278268 0.00049 23_[+4]_49 chrIII:11774651-11774731 0.00063 72_[+4] chrV:20004701-20004781 0.00063 65_[+4]_7 chrIV:7908907-7908987 0.00063 69_[+4]_3 chrX:1479787-1479867 0.00068 12_[+4]_60 chrII:10019819-10019899 0.00068 3_[+4]_69 chrV:8425317-8425397 0.0007 31_[+4]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRARAAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MRARAAAA width=8 seqs=63 chrX:12186345-12186425 ( 48) AAAGAAAA 1 chrI:13812425-13812505 ( 69) AAAGAAAA 1 chrI:110067-110147 ( 46) AAAGAAAA 1 chrX:927764-927844 ( 17) AAAGAAAA 1 chrIII:4849895-4849975 ( 73) AAAGAAAA 1 chrI:6077281-6077361 ( 55) AGAGAAAA 1 chrX:6515353-6515433 ( 11) AGAGAAAA 1 chrII:9214666-9214746 ( 25) AGAGAAAA 1 chrX:7437132-7437212 ( 61) AGAGAAAA 1 chrII:13640364-13640444 ( 62) AGAGAAAA 1 chrIII:6169043-6169123 ( 3) AGAGAAAA 1 chrI:395263-395343 ( 50) AGAGAAAA 1 chrI:6380910-6380990 ( 54) AGAGAAAA 1 chrIII:13360786-13360866 ( 4) AGAGAAAA 1 chrIV:8240972-8241052 ( 53) CAAGAAAA 1 chrI:10514026-10514106 ( 37) CAAGAAAA 1 chrII:9241735-9241815 ( 23) CAAGAAAA 1 chrII:1310318-1310398 ( 38) CAAGAAAA 1 chrI:4489549-4489629 ( 58) AAAAAAAA 1 chrI:2689458-2689538 ( 51) AAAAAAAA 1 chrIII:3637379-3637459 ( 72) AAAAAAAA 1 chrX:4219645-4219725 ( 33) AAAAAAAA 1 chrX:15564483-15564563 ( 5) AAAAAAAA 1 chrIII:8331936-8332016 ( 26) AAAAAAAA 1 chrX:1526039-1526119 ( 9) AAAAAAAA 1 chrX:16775640-16775720 ( 2) AGAAAAAA 1 chrIV:5089136-5089216 ( 52) AACGAAAA 1 chrV:5845344-5845424 ( 15) AACGAAAA 1 chrIII:11847766-11847846 ( 7) CAAAAAAA 1 chrX:9540594-9540674 ( 23) AGCGAAAA 1 chrIV:11897828-11897908 ( 70) AGCGAAAA 1 chrX:16732349-16732429 ( 37) CAAAAAAA 1 chrX:14556583-14556663 ( 12) CAAAAAAA 1 chrIII:13056894-13056974 ( 33) CAAAAAAA 1 chrX:11662213-11662293 ( 65) CAAAAAAA 1 chrI:10560507-10560587 ( 65) CGAAAAAA 1 chrV:8609879-8609959 ( 52) CGAAAAAA 1 chrI:9736391-9736471 ( 2) CGAAAAAA 1 chrX:12668239-12668319 ( 37) AACAAAAA 1 chrIII:12565909-12565989 ( 72) AACAAAAA 1 chrII:13166004-13166084 ( 13) AACAAAAA 1 chrIV:5605422-5605502 ( 30) AACAAAAA 1 chrX:13328202-13328282 ( 3) CGCGAAAA 1 chrX:13147261-13147341 ( 66) CGCGAAAA 1 chrX:6729758-6729838 ( 16) AAAGAGAA 1 chrII:13672216-13672296 ( 58) AAAGAGAA 1 chrI:11964899-11964979 ( 58) CACAAAAA 1 chrV:635799-635879 ( 13) CACAAAAA 1 chrV:4847608-4847688 ( 8) CACAAAAA 1 chrX:5645830-5645910 ( 14) GAAGAAAA 1 chrIII:6603334-6603414 ( 2) AGAGAGAA 1 chrV:10870239-10870319 ( 42) CAAGAGAA 1 chrV:6348298-6348378 ( 72) GGAGAAAA 1 chrII:2807831-2807911 ( 4) AAAAAGAA 1 chrIII:6948086-6948166 ( 11) AAAAAGAA 1 chrI:3316696-3316776 ( 52) CGAGAGAA 1 chrV:2278188-2278268 ( 24) CGAGAGAA 1 chrIII:11774651-11774731 ( 73) AGCGAGAA 1 chrV:20004701-20004781 ( 66) GGAAAAAA 1 chrIV:7908907-7908987 ( 70) GACGAAAA 1 chrX:1479787-1479867 ( 13) GGCGAAAA 1 chrII:10019819-10019899 ( 4) GGCGAAAA 1 chrV:8425317-8425397 ( 32) AACAAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRARAAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.90618 E= 2.8e-006 109 52 -122 -1262 113 -1262 84 -1262 137 37 -1262 -1262 64 -1262 137 -1262 186 -1262 -1262 -1262 161 -1262 -48 -1262 186 -1262 -1262 -1262 186 -1262 -1262 -1262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRARAAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 2.8e-006 0.587302 0.317460 0.095238 0.000000 0.603175 0.000000 0.396825 0.000000 0.714286 0.285714 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 1.000000 0.000000 0.000000 0.000000 0.841270 0.000000 0.158730 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRARAAAA MEME-4 regular expression -------------------------------------------------------------------------------- [AC][AG][AC][GA]AAAA -------------------------------------------------------------------------------- Time 15.50 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGAGGG MEME-5 width = 8 sites = 5 llr = 57 E-value = 3.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::8::: pos.-specific C ::::2::: probability G aaaa:aaa matrix T :::::::: bits 2.2 **** *** 2.0 **** *** 1.7 **** *** 1.5 **** *** Relative 1.3 ******** Entropy 1.1 ******** (16.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGAGGG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:11847766-11847846 57 7.33e-06 TCGACAATTC GGGGAGGG CGCTTTGTAC chrIV:2773558-2773638 68 7.33e-06 TGTGATGACA GGGGAGGG GGAGG chrX:17058510-17058590 12 7.33e-06 CGATATagga ggggaggg agagaaaggc chrI:2125295-2125375 49 7.33e-06 GTGGCTGCCC GGGGAGGG GAAAGAACGT chrX:10688556-10688636 19 1.32e-05 TGTGTTCAAT GGGGCGGG AAGGAAAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:11847766-11847846 7.3e-06 56_[+5]_16 chrIV:2773558-2773638 7.3e-06 67_[+5]_5 chrX:17058510-17058590 7.3e-06 11_[+5]_61 chrI:2125295-2125375 7.3e-06 48_[+5]_24 chrX:10688556-10688636 1.3e-05 18_[+5]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGAGGG width=8 seqs=5 chrIII:11847766-11847846 ( 57) GGGGAGGG 1 chrIV:2773558-2773638 ( 68) GGGGAGGG 1 chrX:17058510-17058590 ( 12) GGGGAGGG 1 chrI:2125295-2125375 ( 49) GGGGAGGG 1 chrX:10688556-10688636 ( 19) GGGGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.0849 E= 3.6e+004 -897 -897 217 -897 -897 -897 217 -897 -897 -897 217 -897 -897 -897 217 -897 153 -15 -897 -897 -897 -897 217 -897 -897 -897 217 -897 -897 -897 217 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 3.6e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 regular expression -------------------------------------------------------------------------------- GGGG[AC]GGG -------------------------------------------------------------------------------- Time 18.49 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:20419802-20419882 2.41e-01 80 chrIII:13360786-13360866 2.35e-02 3_[+4(4.89e-05)]_69 chrI:6380910-6380990 5.25e-02 53_[+4(4.89e-05)]_19 chrI:3103248-3103328 3.65e-01 80 chrV:10715325-10715405 3.36e-02 80 chrII:6561552-6561632 3.10e-01 80 chrX:2970346-2970426 1.82e-01 80 chrV:10722803-10722883 2.06e-01 80 chrV:19620265-19620345 4.26e-03 44_[+2(1.18e-05)]_[+2(4.17e-05)]_20 chrX:11662213-11662293 2.36e-02 80 chrX:14500029-14500109 1.76e-01 80 chrIV:5605422-5605502 9.48e-02 80 chrV:2231091-2231171 5.25e-03 7_[+2(1.18e-05)]_65 chrIV:2412732-2412812 7.01e-03 72_[+3(1.12e-05)] chrX:12444599-12444679 6.43e-01 80 chrII:13166004-13166084 1.40e-01 80 chrI:9173211-9173291 3.96e-01 80 chrIV:10821453-10821533 5.92e-02 80 chrI:3722701-3722781 3.55e-01 80 chrX:14947425-14947505 1.01e-02 9_[+2(1.18e-05)]_63 chrIII:620467-620547 2.68e-01 80 chrIII:13000616-13000696 8.13e-01 80 chrIII:7375062-7375142 6.25e-03 33_[+1(2.87e-05)]_39 chrIV:11636451-11636531 7.86e-02 80 chrV:1467075-1467155 1.30e-02 69_[+3(3.94e-05)]_3 chrIII:6603334-6603414 1.58e-02 80 chrIII:4849895-4849975 1.05e-08 36_[+1(1.45e-05)]_14_[+3(1.12e-05)]_\ 6_[+4(2.71e-05)] chrX:10231061-10231141 2.61e-01 80 chrII:11830802-11830882 1.51e-02 80 chrIII:11836874-11836954 6.85e-02 80 chrX:4102346-4102426 3.89e-01 80 chrI:2125295-2125375 2.58e-03 48_[+5(7.33e-06)]_24 chrI:9313712-9313792 3.96e-01 80 chrV:5845344-5845424 5.75e-02 80 chrII:4296464-4296544 7.29e-02 80 chrV:6348298-6348378 1.46e-03 27_[+3(2.52e-05)]_45 chrIV:13413156-13413236 2.74e-03 50_[+3(1.12e-05)]_22 chrV:2278188-2278268 1.50e-02 80 chrX:5645830-5645910 5.83e-03 2_[+1(1.45e-05)]_70 chrV:10441666-10441746 8.55e-01 80 chrIII:7719527-7719607 1.66e-02 11_[+2(6.99e-05)]_61 chrX:4266619-4266699 3.10e-01 80 chrIV:1923856-1923936 4.38e-01 80 chrV:2212083-2212163 5.79e-04 7_[+1(2.87e-05)]_46_[+3(1.12e-05)]_\ 11 chrX:3102303-3102383 3.92e-02 80 chrV:13336074-13336154 6.78e-02 80 chrV:8014157-8014237 4.00e-02 80 chrIV:11523895-11523975 1.42e-01 80 chrX:17058510-17058590 4.95e-03 11_[+5(7.33e-06)]_61 chrI:8784116-8784196 7.11e-02 80 chrV:8594548-8594628 9.09e-01 80 chrV:7848411-7848491 5.65e-04 80 chrIII:6359606-6359686 3.39e-01 80 chrI:7758301-7758381 8.23e-01 80 chrIV:12040605-12040685 5.72e-02 49_[+3(3.94e-05)]_23 chrX:1526039-1526119 3.69e-01 80 chrIII:2816704-2816784 8.56e-01 80 chrIII:5939657-5939737 2.61e-01 80 chrX:10628582-10628662 2.76e-01 80 chrV:19524784-19524864 1.62e-03 10_[+2(6.99e-05)]_62 chrIII:13056894-13056974 5.96e-03 40_[+1(2.87e-05)]_32 chrII:5020859-5020939 1.92e-02 80 chrX:16218459-16218539 5.96e-03 14_[+2(1.18e-05)]_58 chrIV:7168428-7168508 8.62e-01 80 chrIII:9827340-9827420 2.63e-01 80 chrX:13383427-13383507 2.64e-03 80 chrI:3316696-3316776 1.57e-01 80 chrIV:7166719-7166799 3.61e-02 40_[+2(1.18e-05)]_32 chrX:14556583-14556663 1.00e-01 80 chrV:10723401-10723481 2.21e-03 64_[+1(1.45e-05)]_8 chrII:9807739-9807819 1.56e-01 80 chrII:9647299-9647379 3.91e-04 10_[+3(2.52e-05)]_18_[+1(1.45e-05)]_\ 36 chrIV:11487983-11488063 2.84e-01 80 chrIII:8331936-8332016 1.32e-01 80 chrII:2831306-2831386 1.14e-01 80 chrI:1689028-1689108 3.14e-01 80 chrV:1771890-1771970 8.27e-02 80 chrV:18569508-18569588 8.67e-01 80 chrIV:14609924-14610004 3.41e-01 80 chrIV:7908907-7908987 8.13e-03 80 chrIV:6522503-6522583 6.26e-02 80 chrIV:1035277-1035357 1.13e-02 37_[+3(9.38e-05)]_35 chrI:395263-395343 1.74e-02 49_[+4(4.89e-05)]_23 chrX:14503983-14504063 1.37e-02 8_[+3(9.38e-05)]_64 chrII:15209443-15209523 9.73e-02 2_[+2(6.99e-05)]_70 chrIV:4405314-4405394 8.18e-01 80 chrIV:13880984-13881064 3.36e-01 80 chrV:13659367-13659447 8.21e-01 80 chrV:10940100-10940180 3.73e-01 80 chrI:9736391-9736471 2.06e-03 80 chrI:8013513-8013593 9.92e-02 21_[+2(6.99e-05)]_51 chrV:20004701-20004781 7.43e-02 80 chrIII:4899281-4899361 5.43e-02 80 chrX:12875844-12875924 7.04e-01 80 chrX:8026894-8026974 5.58e-01 80 chrX:16550677-16550757 4.33e-01 80 chrX:726418-726498 7.75e-02 80 chrV:13412078-13412158 1.82e-02 80 chrIV:17333658-17333738 7.05e-03 49_[+3(1.12e-05)]_23 chrIII:6962214-6962294 8.17e-01 80 chrIII:11989982-11990062 1.40e-02 5_[+1(4.03e-05)]_10_[+2(9.78e-05)]_\ 49 chrIII:6422876-6422956 2.26e-01 80 chrX:927764-927844 2.33e-03 16_[+4(2.71e-05)]_56 chrIV:2773558-2773638 3.78e-03 67_[+5(7.33e-06)]_5 chrIII:6948086-6948166 4.50e-03 6_[+4(4.89e-05)]_66 chrIII:3952246-3952326 8.23e-01 80 chrIV:8232577-8232657 5.82e-03 80 chrV:8609879-8609959 3.54e-02 80 chrX:11469782-11469862 1.58e-01 44_[+1(4.03e-05)]_28 chrII:2807831-2807911 8.56e-02 80 chrIV:7291215-7291295 2.63e-03 80 chrIII:2089577-2089657 2.95e-02 68_[+2(1.18e-05)]_4 chrX:10688556-10688636 2.71e-04 18_[+5(1.32e-05)]_31_[+1(1.45e-05)]_\ 15 chrX:13225248-13225328 6.57e-02 63_[+1(1.45e-05)]_9 chrI:8787793-8787873 4.62e-01 80 chrIV:13521930-13522010 1.33e-01 80 chrV:13300647-13300727 8.51e-01 80 chrX:16732349-16732429 6.75e-02 80 chrIII:9511223-9511303 2.33e-01 80 chrII:2805077-2805157 1.32e-01 80 chrIII:5373068-5373148 9.75e-02 80 chrI:9438014-9438094 3.39e-02 3_[+2(6.99e-05)]_69 chrX:15564483-15564563 1.06e-02 80 chrIV:5602546-5602626 1.56e-01 80 chrV:12066019-12066099 2.08e-01 80 chrV:16594672-16594752 1.79e-01 80 chrIII:3977143-3977223 5.27e-04 31_[+5(2.66e-05)]_41 chrIII:8732110-8732190 7.91e-02 80 chrII:7394145-7394225 7.91e-01 80 chrII:13672216-13672296 1.87e-03 80 chrIII:6169043-6169123 3.47e-03 2_[+4(4.89e-05)]_51_[+1(4.03e-05)]_\ 11 chrX:4219645-4219725 4.10e-03 80 chrIII:12565909-12565989 1.53e-02 80 chrIV:4216304-4216384 2.58e-01 80 chrIII:9580642-9580722 1.50e-01 80 chrII:9622002-9622082 4.44e-01 80 chrI:1687798-1687878 2.23e-01 80 chrV:10020125-10020205 2.64e-05 5_[+2(1.18e-05)]_45_[+5(1.32e-05)]_\ 14 chrX:13603973-13604053 2.74e-03 38_[+1(2.87e-05)]_34 chrI:5626493-5626573 2.07e-03 21_[+2(1.18e-05)]_14_[+1(2.87e-05)]_\ 29 chrIV:14612221-14612301 8.74e-01 80 chrI:8869258-8869338 1.73e-01 80 chrIII:5380095-5380175 3.34e-03 71_[+3(6.48e-05)]_1 chrII:4726290-4726370 7.95e-02 80 chrIII:5685612-5685692 3.92e-02 80 chrII:1310318-1310398 3.03e-02 37_[+4(7.06e-05)]_35 chrX:16793643-16793723 1.12e-01 80 chrV:4847608-4847688 9.17e-03 43_[+3(9.38e-05)]_29 chrIII:9353938-9354018 5.02e-01 80 chrIII:13626851-13626931 5.58e-02 59_[+3(1.12e-05)]_13 chrIII:3377891-3377971 1.74e-01 80 chrII:9241735-9241815 1.85e-02 22_[+4(7.06e-05)]_50 chrIII:9391120-9391200 4.06e-03 4_[+2(1.18e-05)]_68 chrI:8640355-8640435 1.73e-01 80 chrV:20417970-20418050 5.48e-02 7_[+2(1.18e-05)]_65 chrIV:7023972-7024052 5.59e-02 65_[+2(9.78e-05)]_7 chrII:4090941-4091021 5.31e-02 80 chrIII:402283-402363 1.37e-01 5_[+1(2.87e-05)]_67 chrI:1695194-1695274 9.27e-01 80 chrIV:11897828-11897908 9.89e-02 80 chrV:903648-903728 8.83e-03 20_[+3(1.12e-05)]_52 chrV:10870239-10870319 5.29e-03 33_[+3(9.38e-05)]_39 chrX:11478916-11478996 8.86e-01 80 chrII:6830208-6830288 1.17e-01 39_[+2(6.99e-05)]_33 chrIV:16171474-16171554 2.85e-03 46_[+3(9.38e-05)]_7_[+1(1.45e-05)]_\ 11 chrIV:5089136-5089216 2.20e-02 80 chrIV:8146356-8146436 2.18e-02 80 chrI:110067-110147 8.13e-03 45_[+4(2.71e-05)]_27 chrX:12668239-12668319 8.45e-03 72_[+3(5.06e-05)] chrIII:5937097-5937177 2.78e-01 80 chrIII:3637379-3637459 1.56e-02 80 chrII:5874301-5874381 1.92e-03 38_[+3(1.12e-05)]_34 chrIII:8761404-8761484 2.28e-01 80 chrIII:5877038-5877118 1.07e-01 80 chrI:10760430-10760510 4.29e-02 10_[+2(6.99e-05)]_62 chrII:12053026-12053106 5.47e-01 80 chrII:5942726-5942806 2.23e-01 80 chrX:1026840-1026920 1.49e-01 80 chrII:2970561-2970641 9.47e-01 80 chrII:9156391-9156471 6.92e-01 80 chrX:13367111-13367191 2.47e-01 80 chrV:12512916-12512996 8.51e-01 80 chrX:17631834-17631914 1.97e-01 14_[+2(9.78e-05)]_58 chrIII:6452875-6452955 3.68e-01 80 chrI:2689458-2689538 1.37e-02 46_[+4(7.06e-05)]_26 chrIV:8225522-8225602 4.39e-01 80 chrX:2840432-2840512 1.95e-01 80 chrI:1701870-1701950 1.07e-02 40_[+1(4.03e-05)]_32 chrIV:17442688-17442768 2.70e-01 80 chrX:13147261-13147341 1.43e-02 80 chrIV:2603843-2603923 4.24e-03 41_[+3(1.12e-05)]_31 chrX:11790805-11790885 9.73e-01 80 chrIV:14413535-14413615 1.84e-01 80 chrIV:5590262-5590342 5.37e-01 80 chrII:10019819-10019899 2.71e-01 80 chrI:13812425-13812505 6.30e-04 68_[+4(2.71e-05)]_4 chrIII:1682456-1682536 5.99e-02 80 chrV:19428262-19428342 1.87e-01 80 chrIII:4412285-4412365 5.57e-01 80 chrI:10560507-10560587 9.93e-03 8_[+1(1.45e-05)]_64 chrX:14946850-14946930 9.81e-02 80 chrV:10536301-10536381 2.09e-01 80 chrX:14145865-14145945 7.67e-01 80 chrII:10547905-10547985 2.91e-02 80 chrII:11611637-11611717 2.66e-01 47_[+1(4.03e-05)]_25 chrIV:10843104-10843184 8.02e-01 80 chrX:16813328-16813408 2.37e-01 80 chrIII:9666404-9666484 8.67e-03 80 chrIII:11774651-11774731 1.79e-02 16_[+1(4.03e-05)]_56 chrX:1479787-1479867 6.26e-02 80 chrX:6729758-6729838 2.96e-01 80 chrII:13640364-13640444 4.05e-02 61_[+4(4.89e-05)]_11 chrI:11674368-11674448 4.79e-01 80 chrX:5715531-5715611 7.27e-02 26_[+1(1.45e-05)]_46 chrII:12823567-12823647 2.10e-01 80 chrX:945830-945910 8.29e-01 80 chrV:635799-635879 3.01e-02 53_[+3(5.06e-05)]_19 chrV:10247154-10247234 5.10e-01 80 chrX:13328202-13328282 2.02e-01 80 chrIII:4950528-4950608 5.11e-02 31_[+2(2.67e-05)]_41 chrI:4489549-4489629 2.41e-02 80 chrX:9540594-9540674 1.31e-02 33_[+3(6.48e-05)]_39 chrX:12186345-12186425 2.93e-02 47_[+4(2.71e-05)]_25 chrX:7437132-7437212 1.23e-02 60_[+4(4.89e-05)]_12 chrIV:7145043-7145123 4.64e-01 80 chrV:8425317-8425397 4.60e-02 80 chrX:10630242-10630322 7.43e-02 38_[+1(1.45e-05)]_34 chrX:7636140-7636220 4.41e-01 80 chrI:11871856-11871936 6.45e-03 47_[+3(9.38e-05)]_10_[+3(1.12e-05)]_\ 7 chrII:9214666-9214746 2.59e-02 24_[+4(4.89e-05)]_48 chrX:6515353-6515433 6.65e-04 10_[+4(4.89e-05)]_62 chrI:11964899-11964979 4.76e-01 80 chrX:2858555-2858635 4.48e-01 80 chrIII:3703525-3703605 2.09e-03 61_[+2(1.18e-05)]_11 chrX:2972568-2972648 2.90e-01 80 chrV:19666466-19666546 3.85e-02 58_[+2(1.18e-05)]_14 chrX:16775640-16775720 1.53e-01 80 chrI:14642683-14642763 4.94e-01 80 chrV:10467413-10467493 7.15e-01 80 chrX:2802936-2803016 3.27e-01 80 chrV:12302275-12302355 6.11e-01 80 chrI:10514026-10514106 4.51e-02 36_[+4(7.06e-05)]_36 chrIV:1906953-1907033 4.05e-02 59_[+2(1.18e-05)]_13 chrX:2316341-2316421 2.96e-02 80 chrIV:8240972-8241052 8.80e-02 52_[+4(7.06e-05)]_20 chrI:6077281-6077361 4.33e-02 7_[+4(4.89e-05)]_39_[+4(4.89e-05)]_\ 18 chrIII:11847766-11847846 6.81e-04 56_[+5(7.33e-06)]_16 chrII:6609584-6609664 3.87e-01 80 chrII:15195502-15195582 4.65e-02 48_[+1(2.87e-05)]_24 chrX:15380031-15380111 3.09e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************