******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/hlh-13.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:5056379-5056459 1.0000 80 chrI:933476-933556 1.0000 80 chrIV:11071028-11071108 1.0000 80 chrII:10336309-10336389 1.0000 80 chrIII:931565-931645 1.0000 80 chrIII:3499989-3500069 1.0000 80 chrV:6222501-6222581 1.0000 80 chrII:13984986-13985066 1.0000 80 chrII:5097684-5097764 1.0000 80 chrIII:445695-445775 1.0000 80 chrV:12510128-12510208 1.0000 80 chrX:8156132-8156212 1.0000 80 chrV:5284760-5284840 1.0000 80 chrX:4222462-4222542 1.0000 80 chrII:7883269-7883349 1.0000 80 chrV:9343855-9343935 1.0000 80 chrI:2299701-2299781 1.0000 80 chrX:1644103-1644183 1.0000 80 chrI:14847295-14847375 1.0000 80 chrX:4221586-4221666 1.0000 80 chrI:11609170-11609250 1.0000 80 chrIV:5334723-5334803 1.0000 80 chrII:2570622-2570702 1.0000 80 chrX:4961118-4961198 1.0000 80 chrIII:1122397-1122477 1.0000 80 chrX:9296778-9296858 1.0000 80 chrV:18720323-18720403 1.0000 80 chrX:14877766-14877846 1.0000 80 chrIII:1824624-1824704 1.0000 80 chrII:7001606-7001686 1.0000 80 chrX:9078306-9078386 1.0000 80 chrV:8785791-8785871 1.0000 80 chrV:979742-979822 1.0000 80 chrI:4175915-4175995 1.0000 80 chrIV:1377766-1377846 1.0000 80 chrIV:1914173-1914253 1.0000 80 chrIV:2639805-2639885 1.0000 80 chrV:14855733-14855813 1.0000 80 chrI:13637373-13637453 1.0000 80 chrV:1153356-1153436 1.0000 80 chrI:10757144-10757224 1.0000 80 chrX:13653759-13653839 1.0000 80 chrX:12407515-12407595 1.0000 80 chrII:14635326-14635406 1.0000 80 chrIII:12688758-12688838 1.0000 80 chrIII:3664394-3664474 1.0000 80 chrIV:1981110-1981190 1.0000 80 chrV:16699942-16700022 1.0000 80 chrX:14115637-14115717 1.0000 80 chrIV:12417172-12417252 1.0000 80 chrX:2852336-2852416 1.0000 80 chrI:9268914-9268994 1.0000 80 chrX:12890333-12890413 1.0000 80 chrX:5686278-5686358 1.0000 80 chrX:15520230-15520310 1.0000 80 chrIV:385253-385333 1.0000 80 chrII:5772881-5772961 1.0000 80 chrIV:15932056-15932136 1.0000 80 chrV:53450-53530 1.0000 80 chrV:19343556-19343636 1.0000 80 chrIV:16398331-16398411 1.0000 80 chrI:6136538-6136618 1.0000 80 chrX:13415146-13415226 1.0000 80 chrIII:11958187-11958267 1.0000 80 chrI:13310349-13310429 1.0000 80 chrX:16551508-16551588 1.0000 80 chrX:7573579-7573659 1.0000 80 chrIII:6133577-6133657 1.0000 80 chrX:4752872-4752952 1.0000 80 chrI:367302-367382 1.0000 80 chrI:2803344-2803424 1.0000 80 chrX:14229577-14229657 1.0000 80 chrI:2889914-2889994 1.0000 80 chrII:7708709-7708789 1.0000 80 chrIII:1327117-1327197 1.0000 80 chrII:11959396-11959476 1.0000 80 chrIII:13225160-13225240 1.0000 80 chrIII:5503881-5503961 1.0000 80 chrX:5319401-5319481 1.0000 80 chrX:14804901-14804981 1.0000 80 chrX:3969485-3969565 1.0000 80 chrIII:8106690-8106770 1.0000 80 chrIII:10856999-10857079 1.0000 80 chrX:14975697-14975777 1.0000 80 chrI:9605774-9605854 1.0000 80 chrV:12332021-12332101 1.0000 80 chrIV:14576637-14576717 1.0000 80 chrV:14876412-14876492 1.0000 80 chrV:16593485-16593565 1.0000 80 chrII:6248672-6248752 1.0000 80 chrV:15505216-15505296 1.0000 80 chrIV:8431716-8431796 1.0000 80 chrX:15277877-15277957 1.0000 80 chrI:9953498-9953578 1.0000 80 chrIII:8653058-8653138 1.0000 80 chrV:11638849-11638929 1.0000 80 chrI:14721582-14721662 1.0000 80 chrIII:5755430-5755510 1.0000 80 chrIV:3233015-3233095 1.0000 80 chrIV:9191318-9191398 1.0000 80 chrV:18712121-18712201 1.0000 80 chrII:3439428-3439508 1.0000 80 chrI:9512224-9512304 1.0000 80 chrV:16553047-16553127 1.0000 80 chrIII:535360-535440 1.0000 80 chrI:11095919-11095999 1.0000 80 chrV:13393517-13393597 1.0000 80 chrV:13962191-13962271 1.0000 80 chrV:15551825-15551905 1.0000 80 chrV:14038590-14038670 1.0000 80 chrIV:3524775-3524855 1.0000 80 chrV:4491690-4491770 1.0000 80 chrIV:2603790-2603870 1.0000 80 chrIII:3916770-3916850 1.0000 80 chrIV:9074385-9074465 1.0000 80 chrII:10202449-10202529 1.0000 80 chrX:6252273-6252353 1.0000 80 chrV:7231037-7231117 1.0000 80 chrX:8971581-8971661 1.0000 80 chrV:4731532-4731612 1.0000 80 chrIII:5308418-5308498 1.0000 80 chrI:5176381-5176461 1.0000 80 chrX:4444193-4444273 1.0000 80 chrV:12780432-12780512 1.0000 80 chrII:11157794-11157874 1.0000 80 chrIV:1388154-1388234 1.0000 80 chrIV:16399193-16399273 1.0000 80 chrX:8638891-8638971 1.0000 80 chrI:6446624-6446704 1.0000 80 chrII:6913465-6913545 1.0000 80 chrIV:11026148-11026228 1.0000 80 chrX:5708003-5708083 1.0000 80 chrX:1858750-1858830 1.0000 80 chrV:19622533-19622613 1.0000 80 chrX:10821296-10821376 1.0000 80 chrI:7543548-7543628 1.0000 80 chrI:10927494-10927574 1.0000 80 chrX:1837819-1837899 1.0000 80 chrII:6741543-6741623 1.0000 80 chrII:8547126-8547206 1.0000 80 chrIV:9477726-9477806 1.0000 80 chrIII:5305849-5305929 1.0000 80 chrI:488387-488467 1.0000 80 chrI:1575664-1575744 1.0000 80 chrV:19126043-19126123 1.0000 80 chrV:7728393-7728473 1.0000 80 chrX:8386129-8386209 1.0000 80 chrIII:1601618-1601698 1.0000 80 chrX:6220065-6220145 1.0000 80 chrII:10169392-10169472 1.0000 80 chrV:11239324-11239404 1.0000 80 chrV:2638689-2638769 1.0000 80 chrIII:7729882-7729962 1.0000 80 chrI:1823128-1823208 1.0000 80 chrIII:10624740-10624820 1.0000 80 chrX:9637868-9637948 1.0000 80 chrIII:4369533-4369613 1.0000 80 chrIII:1604724-1604804 1.0000 80 chrI:13160993-13161073 1.0000 80 chrIII:5715731-5715811 1.0000 80 chrIII:4568698-4568778 1.0000 80 chrI:1415952-1416032 1.0000 80 chrI:9343865-9343945 1.0000 80 chrI:1175819-1175899 1.0000 80 chrII:3521513-3521593 1.0000 80 chrII:9774862-9774942 1.0000 80 chrII:9566210-9566290 1.0000 80 chrIII:5555092-5555172 1.0000 80 chrI:2935737-2935817 1.0000 80 chrX:15297471-15297551 1.0000 80 chrI:852183-852263 1.0000 80 chrIII:11371427-11371507 1.0000 80 chrI:9373021-9373101 1.0000 80 chrIV:16776096-16776176 1.0000 80 chrIV:620460-620540 1.0000 80 chrIV:14225024-14225104 1.0000 80 chrV:12596880-12596960 1.0000 80 chrIII:11142253-11142333 1.0000 80 chrX:11643923-11644003 1.0000 80 chrIII:12399942-12400022 1.0000 80 chrV:6888995-6889075 1.0000 80 chrII:5358347-5358427 1.0000 80 chrIV:14838307-14838387 1.0000 80 chrI:2410114-2410194 1.0000 80 chrIII:6453807-6453887 1.0000 80 chrIV:322628-322708 1.0000 80 chrX:16928326-16928406 1.0000 80 chrIII:5295026-5295106 1.0000 80 chrIII:9104208-9104288 1.0000 80 chrIII:4171151-4171231 1.0000 80 chrI:11505559-11505639 1.0000 80 chrX:11467355-11467435 1.0000 80 chrIII:8768071-8768151 1.0000 80 chrI:8530104-8530184 1.0000 80 chrV:9503531-9503611 1.0000 80 chrX:13264718-13264798 1.0000 80 chrX:6593530-6593610 1.0000 80 chrX:10963814-10963894 1.0000 80 chrX:13121280-13121360 1.0000 80 chrX:11644124-11644204 1.0000 80 chrIII:9861649-9861729 1.0000 80 chrIV:143923-144003 1.0000 80 chrI:1958534-1958614 1.0000 80 chrIV:17087587-17087667 1.0000 80 chrI:3873916-3873996 1.0000 80 chrV:16592252-16592332 1.0000 80 chrI:11978747-11978827 1.0000 80 chrI:14737474-14737554 1.0000 80 chrX:1379580-1379660 1.0000 80 chrV:9318115-9318195 1.0000 80 chrII:8107249-8107329 1.0000 80 chrX:1880796-1880876 1.0000 80 chrIV:8015996-8016076 1.0000 80 chrIII:4470906-4470986 1.0000 80 chrX:12458220-12458300 1.0000 80 chrIV:11549889-11549969 1.0000 80 chrI:10807261-10807341 1.0000 80 chrX:12563763-12563843 1.0000 80 chrX:15742022-15742102 1.0000 80 chrIII:3175141-3175221 1.0000 80 chrV:13003528-13003608 1.0000 80 chrII:4942496-4942576 1.0000 80 chrV:19522626-19522706 1.0000 80 chrX:5022869-5022949 1.0000 80 chrI:2514285-2514365 1.0000 80 chrI:13331096-13331176 1.0000 80 chrX:353256-353336 1.0000 80 chrX:3371438-3371518 1.0000 80 chrX:3697724-3697804 1.0000 80 chrX:11252626-11252706 1.0000 80 chrII:12494707-12494787 1.0000 80 chrIV:8253014-8253094 1.0000 80 chrIII:11792721-11792801 1.0000 80 chrIII:8937681-8937761 1.0000 80 chrIII:5602199-5602279 1.0000 80 chrI:9267092-9267172 1.0000 80 chrIV:16946940-16947020 1.0000 80 chrIII:8678521-8678601 1.0000 80 chrII:9940578-9940658 1.0000 80 chrII:7200213-7200293 1.0000 80 chrX:6371315-6371395 1.0000 80 chrIV:16382340-16382420 1.0000 80 chrI:11374400-11374480 1.0000 80 chrX:3970109-3970189 1.0000 80 chrIII:5211384-5211464 1.0000 80 chrX:16604738-16604818 1.0000 80 chrIV:12594743-12594823 1.0000 80 chrII:5105242-5105322 1.0000 80 chrX:9467743-9467823 1.0000 80 chrII:7184064-7184144 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_hlh-13/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/hlh-13.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.244 C 0.254 G 0.259 T 0.243 Background letter frequencies (from file dataset with add-one prior applied): A 0.244 C 0.254 G 0.259 T 0.243 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCGAACCC MEME-1 width = 8 sites = 36 llr = 315 E-value = 1.9e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a6::1 pos.-specific C :9::1aa7 probability G ::a:1::: matrix T a1::2::2 bits 2.0 * * * 1.8 * ** ** 1.6 **** ** 1.4 **** ** Relative 1.2 **** ** Entropy 1.0 **** ** (12.6 bits) 0.8 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGAACCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:353256-353336 14 1.56e-05 AGAGTGGGAT TCGAACCC ACGCCCCCGA chrI:13331096-13331176 66 1.56e-05 TCGGGGGGAA TCGAACCC CCGTCGA chrX:1880796-1880876 36 1.56e-05 GAACCGGGAA TCGAACCC GGGACCTCTC chrX:1379580-1379660 38 1.56e-05 TCGGGGGGAA TCGAACCC CCGTCGAATG chrI:8530104-8530184 39 1.56e-05 TTGCGGGGAA TCGAACCC CGGCCTTATG chrIV:14838307-14838387 28 1.56e-05 GGGGACGGGT TCGAACCC AGGACACTAT chrX:10821296-10821376 46 1.56e-05 ATGCCGGGAA TCGAACCC GGGCCGCGTG chrII:11157794-11157874 23 1.56e-05 AATGCGGGGC TCGAACCC GCGACAACCA chrV:15505216-15505296 7 1.56e-05 cgggaa tcgaaccc gggccgcccg chrI:9605774-9605854 45 1.56e-05 CCGCGTAGGT TCGAACCC TGCTCGCTGC chrII:5772881-5772961 50 1.56e-05 CGAGTGGGGT TCGAACCC ACGAGGTGTT chrII:14635326-14635406 24 1.56e-05 AGAGTGGGAT TCGAACCC ACGCCCCCGA chrX:3970109-3970189 40 3.11e-05 GGTCCCGGGA TCGATCCC CGGTCCGGCC chrI:2410114-2410194 64 3.11e-05 GCGCGCTGGT TCGATCCC CACCAAGCG chrII:11959396-11959476 33 3.11e-05 GGCCGCCGGT TCGATCCC GGCCAGGACC chrI:9268914-9268994 29 3.11e-05 GAGCCGGGGA TCGATCCC GGGACCTCTC chrX:6220065-6220145 20 4.60e-05 ACGGCAGGAT TCGAACCT ACAATCTTCT chrIV:11026148-11026228 10 4.60e-05 CCGGTGGTG TCGAACCT GGGAGTATAA chrX:15297471-15297551 55 6.23e-05 GGTCGCAGGT TCGACCCC TGCTGGCGGC chrIV:3233015-3233095 65 6.23e-05 GTCGTCCCAA TCGACCCC GGCCGCTT chrII:6248672-6248752 30 6.23e-05 CAATGTAGGT TCGACCCC CGCTTTACTG chrIII:9104208-9104288 14 7.73e-05 CCGGGTGGGC TCGAACCA CCAACCTTTC chrIII:10624740-10624820 17 7.73e-05 CATGCTGGAA TCGAACCA GCGACCTTCT chrX:1837819-1837899 24 7.73e-05 GAAGAAAAAA TCGAACCA CGGTCTTGTG chrIII:13225160-13225240 17 7.73e-05 CCGGGTGGGC TCGAACCA CCAACCTTTC chrX:9467743-9467823 1 9.22e-05 . TTGAACCC GGGACCTCTC chrI:2514285-2514365 29 9.22e-05 GGAGGCGGAA TTGAACCC GTGGTGTTGC chrIV:322628-322708 19 9.22e-05 cggccgggaa ttgaaccc gggtctcgca chrIV:12594743-12594823 51 1.09e-04 TGTCGCGGGT TCGAGCCC CGCATTGGGC chrIV:12417172-12417252 29 1.09e-04 AAAGTACATT TCGAGCCC GTTTTAAAAT chrV:19126043-19126123 55 1.24e-04 GGTCACCAGT TCGATCCT GGTTCGGGGC chrIII:8653058-8653138 51 1.24e-04 GGTCACCAGT TCGATCCT GGTTCGGGGC chrX:16551508-16551588 57 1.24e-04 GGTCACCAGT TCGATCCT GGTTCGGGGC chrI:2935737-2935817 36 1.54e-04 ACACCACAGC TCGACCCT GACACACGGC chrIV:2639805-2639885 19 1.84e-04 ATGCCGGGAA TCGAAACC GGGCCGCGTG chrIII:3499989-3500069 31 1.84e-04 TCGTGGGGCC TCAAACCC GGAAATTCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:353256-353336 1.6e-05 13_[+1]_59 chrI:13331096-13331176 1.6e-05 65_[+1]_7 chrX:1880796-1880876 1.6e-05 35_[+1]_37 chrX:1379580-1379660 1.6e-05 37_[+1]_35 chrI:8530104-8530184 1.6e-05 38_[+1]_34 chrIV:14838307-14838387 1.6e-05 27_[+1]_45 chrX:10821296-10821376 1.6e-05 45_[+1]_27 chrII:11157794-11157874 1.6e-05 22_[+1]_50 chrV:15505216-15505296 1.6e-05 6_[+1]_66 chrI:9605774-9605854 1.6e-05 44_[+1]_28 chrII:5772881-5772961 1.6e-05 49_[+1]_23 chrII:14635326-14635406 1.6e-05 23_[+1]_49 chrX:3970109-3970189 3.1e-05 39_[+1]_33 chrI:2410114-2410194 3.1e-05 63_[+1]_9 chrII:11959396-11959476 3.1e-05 32_[+1]_40 chrI:9268914-9268994 3.1e-05 28_[+1]_44 chrX:6220065-6220145 4.6e-05 19_[+1]_53 chrIV:11026148-11026228 4.6e-05 9_[+1]_63 chrX:15297471-15297551 6.2e-05 54_[+1]_18 chrIV:3233015-3233095 6.2e-05 64_[+1]_8 chrII:6248672-6248752 6.2e-05 29_[+1]_43 chrIII:9104208-9104288 7.7e-05 13_[+1]_59 chrIII:10624740-10624820 7.7e-05 16_[+1]_56 chrX:1837819-1837899 7.7e-05 23_[+1]_49 chrIII:13225160-13225240 7.7e-05 16_[+1]_56 chrX:9467743-9467823 9.2e-05 [+1]_72 chrI:2514285-2514365 9.2e-05 28_[+1]_44 chrIV:322628-322708 9.2e-05 18_[+1]_54 chrIV:12594743-12594823 0.00011 50_[+1]_22 chrIV:12417172-12417252 0.00011 28_[+1]_44 chrV:19126043-19126123 0.00012 54_[+1]_18 chrIII:8653058-8653138 0.00012 50_[+1]_22 chrX:16551508-16551588 0.00012 56_[+1]_16 chrI:2935737-2935817 0.00015 35_[+1]_37 chrIV:2639805-2639885 0.00018 18_[+1]_54 chrIII:3499989-3500069 0.00018 30_[+1]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAACCC width=8 seqs=36 chrX:353256-353336 ( 14) TCGAACCC 1 chrI:13331096-13331176 ( 66) TCGAACCC 1 chrX:1880796-1880876 ( 36) TCGAACCC 1 chrX:1379580-1379660 ( 38) TCGAACCC 1 chrI:8530104-8530184 ( 39) TCGAACCC 1 chrIV:14838307-14838387 ( 28) TCGAACCC 1 chrX:10821296-10821376 ( 46) TCGAACCC 1 chrII:11157794-11157874 ( 23) TCGAACCC 1 chrV:15505216-15505296 ( 7) TCGAACCC 1 chrI:9605774-9605854 ( 45) TCGAACCC 1 chrII:5772881-5772961 ( 50) TCGAACCC 1 chrII:14635326-14635406 ( 24) TCGAACCC 1 chrX:3970109-3970189 ( 40) TCGATCCC 1 chrI:2410114-2410194 ( 64) TCGATCCC 1 chrII:11959396-11959476 ( 33) TCGATCCC 1 chrI:9268914-9268994 ( 29) TCGATCCC 1 chrX:6220065-6220145 ( 20) TCGAACCT 1 chrIV:11026148-11026228 ( 10) TCGAACCT 1 chrX:15297471-15297551 ( 55) TCGACCCC 1 chrIV:3233015-3233095 ( 65) TCGACCCC 1 chrII:6248672-6248752 ( 30) TCGACCCC 1 chrIII:9104208-9104288 ( 14) TCGAACCA 1 chrIII:10624740-10624820 ( 17) TCGAACCA 1 chrX:1837819-1837899 ( 24) TCGAACCA 1 chrIII:13225160-13225240 ( 17) TCGAACCA 1 chrX:9467743-9467823 ( 1) TTGAACCC 1 chrI:2514285-2514365 ( 29) TTGAACCC 1 chrIV:322628-322708 ( 19) TTGAACCC 1 chrIV:12594743-12594823 ( 51) TCGAGCCC 1 chrIV:12417172-12417252 ( 29) TCGAGCCC 1 chrV:19126043-19126123 ( 55) TCGATCCT 1 chrIII:8653058-8653138 ( 51) TCGATCCT 1 chrX:16551508-16551588 ( 57) TCGATCCT 1 chrI:2935737-2935817 ( 36) TCGACCCT 1 chrIV:2639805-2639885 ( 19) TCGAAACC 1 chrIII:3499989-3500069 ( 31) TCAAACCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.11739 E= 1.9e-010 -1181 -1181 -1181 204 -1181 185 -1181 -154 -313 -1181 191 -1181 204 -1181 -1181 -1181 139 -119 -222 -32 -313 194 -1181 -1181 -1181 198 -1181 -1181 -113 151 -1181 -55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.9e-010 0.000000 0.000000 0.000000 1.000000 0.000000 0.916667 0.000000 0.083333 0.027778 0.000000 0.972222 0.000000 1.000000 0.000000 0.000000 0.000000 0.638889 0.111111 0.055556 0.194444 0.027778 0.972222 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.722222 0.000000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 regular expression -------------------------------------------------------------------------------- TCGAACCC -------------------------------------------------------------------------------- Time 4.92 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-2 width = 8 sites = 18 llr = 193 E-value = 1.4e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::::a: pos.-specific C :::a:a:: probability G ::a:1::a matrix T a:::9::: bits 2.0 **** *** 1.8 **** *** 1.6 **** *** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (15.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:12594743-12594823 4 1.52e-05 GGT TAGCTCAG TCGGTAGAGC chrIII:11792721-11792801 68 1.52e-05 GACGCCCGTA TAGCTCAG TGGCA chrII:12494707-12494787 41 1.52e-05 TCGGCCGCCA TAGCTCAG TCGGTTAGAG chrX:12563763-12563843 32 1.52e-05 TGTGCCCTTA TAGCTCAG TGGTAGAGCG chrX:6593530-6593610 73 1.52e-05 ACTGCCTCGA TAGCTCAG chrV:9503531-9503611 38 1.52e-05 GTCGGGGGTA TAGCTCAG GGGTAGAGCG chrX:15297471-15297551 7 1.52e-05 CCGCCA TAGCTCAG TCGGTTAGAG chrV:19126043-19126123 8 1.52e-05 GCCTCGA TAGCTCAG TTGGGAGAGC chrIII:5305849-5305929 63 1.52e-05 GGCGCCCTTA TAGCTCAG TGGTAGAGCG chrX:8638891-8638971 38 1.52e-05 TGTGGGGGTA TAGCTCAG TGGCAGAGCA chrIII:535360-535440 29 1.52e-05 GTGCCGTCGA TAGCTCAG TTGGTAGAGC chrIII:8653058-8653138 4 1.52e-05 CGA TAGCTCAG TTGGGAGAGC chrX:16551508-16551588 10 1.52e-05 GTGCCTCGA TAGCTCAG TTGGGAGAGC chrI:6136538-6136618 66 1.52e-05 GCCGCCCGGT TAGCTCAG TCGGTAG chrIV:16398331-16398411 60 1.52e-05 TGCGGGGGTA TAGCTCAG TGGTAGAGCG chrII:7001606-7001686 28 1.52e-05 GTTACCTGTG TAGCTCAG GGGTAGAGCG chrX:3697724-3697804 39 3.14e-05 CGTGCTTCCG TAGCGCAG TAGGCAGCGC chrIII:1122397-1122477 44 3.14e-05 TGTTGCCGTT TAGCGCAG GCGGGAGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:12594743-12594823 1.5e-05 3_[+2]_69 chrIII:11792721-11792801 1.5e-05 67_[+2]_5 chrII:12494707-12494787 1.5e-05 40_[+2]_32 chrX:12563763-12563843 1.5e-05 31_[+2]_41 chrX:6593530-6593610 1.5e-05 72_[+2] chrV:9503531-9503611 1.5e-05 37_[+2]_35 chrX:15297471-15297551 1.5e-05 6_[+2]_66 chrV:19126043-19126123 1.5e-05 7_[+2]_65 chrIII:5305849-5305929 1.5e-05 62_[+2]_10 chrX:8638891-8638971 1.5e-05 37_[+2]_35 chrIII:535360-535440 1.5e-05 28_[+2]_44 chrIII:8653058-8653138 1.5e-05 3_[+2]_69 chrX:16551508-16551588 1.5e-05 9_[+2]_63 chrI:6136538-6136618 1.5e-05 65_[+2]_7 chrIV:16398331-16398411 1.5e-05 59_[+2]_13 chrII:7001606-7001686 1.5e-05 27_[+2]_45 chrX:3697724-3697804 3.1e-05 38_[+2]_34 chrIII:1122397-1122477 3.1e-05 43_[+2]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=18 chrIV:12594743-12594823 ( 4) TAGCTCAG 1 chrIII:11792721-11792801 ( 68) TAGCTCAG 1 chrII:12494707-12494787 ( 41) TAGCTCAG 1 chrX:12563763-12563843 ( 32) TAGCTCAG 1 chrX:6593530-6593610 ( 73) TAGCTCAG 1 chrV:9503531-9503611 ( 38) TAGCTCAG 1 chrX:15297471-15297551 ( 7) TAGCTCAG 1 chrV:19126043-19126123 ( 8) TAGCTCAG 1 chrIII:5305849-5305929 ( 63) TAGCTCAG 1 chrX:8638891-8638971 ( 38) TAGCTCAG 1 chrIII:535360-535440 ( 29) TAGCTCAG 1 chrIII:8653058-8653138 ( 4) TAGCTCAG 1 chrX:16551508-16551588 ( 10) TAGCTCAG 1 chrI:6136538-6136618 ( 66) TAGCTCAG 1 chrIV:16398331-16398411 ( 60) TAGCTCAG 1 chrII:7001606-7001686 ( 28) TAGCTCAG 1 chrX:3697724-3697804 ( 39) TAGCGCAG 1 chrIII:1122397-1122477 ( 44) TAGCGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 1.4e-009 -1081 -1081 -1081 204 204 -1081 -1081 -1081 -1081 -1081 195 -1081 -1081 198 -1081 -1081 -1081 -1081 -122 187 -1081 198 -1081 -1081 204 -1081 -1081 -1081 -1081 -1081 195 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.4e-009 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 8.58 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGMGCYA MEME-3 width = 8 sites = 28 llr = 248 E-value = 8.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGMGCYA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::61::a pos.-specific C 8::4:a6: probability G ::a:9::: matrix T 2a::::4: bits 2.0 ** * * 1.8 ** * * 1.6 ** * * 1.4 ** ** * Relative 1.2 *** ** * Entropy 1.0 ******** (12.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGAGCCA consensus T C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMGCYA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3371438-3371518 41 1.59e-05 CGCTCTGCCA CTGAGCCA ATGAGGCGCA chrIII:10624740-10624820 59 1.59e-05 CGCTCTGCCA CTGAGCCA ATGAGGCGCG chrII:7184064-7184144 65 3.25e-05 CGCACATCCA CTGCGCCA TTCTGCCA chrII:4942496-4942576 72 3.25e-05 CGCGTTACCA CTGCGCCA C chrIII:5295026-5295106 10 3.25e-05 ACGCTTCCA CTGCGCCA CGCTGCTGCA chrI:852183-852263 47 3.25e-05 CCTTAGACTA CTGCGCCA CGCGTGCGAA chrII:9774862-9774942 25 3.25e-05 GCGTTACCCA CTGCGCCA CCGAGGTCGG chrIV:9477726-9477806 31 3.25e-05 CTTTTACCAC CTGCGCCA TGCGGGCATA chrV:13003528-13003608 38 4.77e-05 CGCTCTACCA CTGAGCTA TACCCCCGCA chrX:12458220-12458300 13 4.77e-05 CGCTCTACCA CTGAGCTA TACCCCCAGA chrX:13264718-13264798 34 4.77e-05 GCTCTACCAA CTGAGCTA TCGACGGCAT chrX:9637868-9637948 41 4.77e-05 CGCTCTACCA CTGAGCTA TACCCCCGCA chrII:11157794-11157874 66 4.77e-05 GCTCTACCGA CTGAGCTA ACCGGGC chrII:3439428-3439508 24 4.77e-05 GCTCTACCGA CTGAGCTA ACCGGGCCCG chrV:14876412-14876492 35 4.77e-05 GCTCTCCCAA CTGAGCTA TCGAGGCCGA chrX:5319401-5319481 42 4.77e-05 GCTCTCCCAA CTGAGCTA TTGAGGCAGA chrI:13310349-13310429 53 4.77e-05 CGCTCTACCA CTGAGCTA TAAGGGCTGC chrX:13415146-13415226 33 4.77e-05 CTCTAACCGA CTGAGCTA TGGCGGCTGA chrX:12890333-12890413 9 4.77e-05 CTCTACCC CTGAGCTA TGCCCCCACA chrIII:8678521-8678601 33 9.46e-05 CGCGCTACCA TTGCGCCA AGCAGTCACG chrX:11252626-11252706 22 9.46e-05 GCGTTATCCA TTGCGCCA CGCGGCCACA chrIII:9104208-9104288 57 9.46e-05 GCGCTGCCTA TTGCGCCA CGGAAGCAGA chrX:6220065-6220145 63 9.46e-05 GCGTTATCCA TTGCGCCA CGCGGCCACA chrV:12332021-12332101 2 9.46e-05 A TTGCGCCA CGGAAGCCAC chrIII:13225160-13225240 60 9.46e-05 GCGCTGCCTA TTGCGCCA CGGAAGCACG chrX:13121280-13121360 37 1.39e-04 cattctacca ctgaacca ccgatgctTG chrX:16928326-16928406 1 1.39e-04 . ctgaacca ccgatgcGCG chrV:15505216-15505296 48 1.39e-04 cattctacca ctgaacca ccgatgcGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMGCYA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3371438-3371518 1.6e-05 40_[+3]_32 chrIII:10624740-10624820 1.6e-05 58_[+3]_14 chrII:7184064-7184144 3.2e-05 64_[+3]_8 chrII:4942496-4942576 3.2e-05 71_[+3]_1 chrIII:5295026-5295106 3.2e-05 9_[+3]_63 chrI:852183-852263 3.2e-05 46_[+3]_26 chrII:9774862-9774942 3.2e-05 24_[+3]_48 chrIV:9477726-9477806 3.2e-05 30_[+3]_42 chrV:13003528-13003608 4.8e-05 37_[+3]_35 chrX:12458220-12458300 4.8e-05 12_[+3]_60 chrX:13264718-13264798 4.8e-05 33_[+3]_39 chrX:9637868-9637948 4.8e-05 40_[+3]_32 chrII:11157794-11157874 4.8e-05 65_[+3]_7 chrII:3439428-3439508 4.8e-05 23_[+3]_49 chrV:14876412-14876492 4.8e-05 34_[+3]_38 chrX:5319401-5319481 4.8e-05 41_[+3]_31 chrI:13310349-13310429 4.8e-05 52_[+3]_20 chrX:13415146-13415226 4.8e-05 32_[+3]_40 chrX:12890333-12890413 4.8e-05 8_[+3]_64 chrIII:8678521-8678601 9.5e-05 32_[+3]_40 chrX:11252626-11252706 9.5e-05 21_[+3]_51 chrIII:9104208-9104288 9.5e-05 56_[+3]_16 chrX:6220065-6220145 9.5e-05 62_[+3]_10 chrV:12332021-12332101 9.5e-05 1_[+3]_71 chrIII:13225160-13225240 9.5e-05 59_[+3]_13 chrX:13121280-13121360 0.00014 36_[+3]_36 chrX:16928326-16928406 0.00014 [+3]_72 chrV:15505216-15505296 0.00014 47_[+3]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMGCYA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGMGCYA width=8 seqs=28 chrX:3371438-3371518 ( 41) CTGAGCCA 1 chrIII:10624740-10624820 ( 59) CTGAGCCA 1 chrII:7184064-7184144 ( 65) CTGCGCCA 1 chrII:4942496-4942576 ( 72) CTGCGCCA 1 chrIII:5295026-5295106 ( 10) CTGCGCCA 1 chrI:852183-852263 ( 47) CTGCGCCA 1 chrII:9774862-9774942 ( 25) CTGCGCCA 1 chrIV:9477726-9477806 ( 31) CTGCGCCA 1 chrV:13003528-13003608 ( 38) CTGAGCTA 1 chrX:12458220-12458300 ( 13) CTGAGCTA 1 chrX:13264718-13264798 ( 34) CTGAGCTA 1 chrX:9637868-9637948 ( 41) CTGAGCTA 1 chrII:11157794-11157874 ( 66) CTGAGCTA 1 chrII:3439428-3439508 ( 24) CTGAGCTA 1 chrV:14876412-14876492 ( 35) CTGAGCTA 1 chrX:5319401-5319481 ( 42) CTGAGCTA 1 chrI:13310349-13310429 ( 53) CTGAGCTA 1 chrX:13415146-13415226 ( 33) CTGAGCTA 1 chrX:12890333-12890413 ( 9) CTGAGCTA 1 chrIII:8678521-8678601 ( 33) TTGCGCCA 1 chrX:11252626-11252706 ( 22) TTGCGCCA 1 chrIII:9104208-9104288 ( 57) TTGCGCCA 1 chrX:6220065-6220145 ( 63) TTGCGCCA 1 chrV:12332021-12332101 ( 2) TTGCGCCA 1 chrIII:13225160-13225240 ( 60) TTGCGCCA 1 chrX:13121280-13121360 ( 37) CTGAACCA 1 chrX:16928326-16928406 ( 1) CTGAACCA 1 chrV:15505216-15505296 ( 48) CTGAACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMGCYA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.95252 E= 8.1e-003 -1145 163 -1145 -18 -1145 -1145 -1145 204 -1145 -1145 195 -1145 123 76 -1145 -1145 -119 -1145 178 -1145 -1145 198 -1145 -1145 -1145 126 -1145 69 204 -1145 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMGCYA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 8.1e-003 0.000000 0.785714 0.000000 0.214286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.571429 0.428571 0.000000 0.000000 0.107143 0.000000 0.892857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.607143 0.000000 0.392857 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMGCYA MEME-3 regular expression -------------------------------------------------------------------------------- [CT]TG[AC]GC[CT]A -------------------------------------------------------------------------------- Time 12.26 secs. ******************************************************************************** ******************************************************************************** MOTIF YGCAAAAA MEME-4 width = 8 sites = 33 llr = 277 E-value = 6.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGCAAAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1:9aaa8 pos.-specific C 3:a::::2 probability G 17:1:::: matrix T 62:::::1 bits 2.0 * *** 1.8 * *** 1.6 * *** 1.4 ***** Relative 1.2 ***** Entropy 1.0 ****** (12.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCAAAAA consensus CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCAAAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5295026-5295106 24 1.38e-05 GCCACGCTGC TGCAAAAA CAACACCCTC chrI:1175819-1175899 49 1.38e-05 GCGGCACACT TGCAAAAA CCGTGCGCCC chrX:10821296-10821376 11 1.38e-05 ATGATGTTTC TGCAAAAA ACAAAAAATA chrIV:1388154-1388234 10 1.38e-05 ACTATTTTC TGCAAAAA TGAGAATTCG chrV:4731532-4731612 59 1.38e-05 GCGGGGACAT TGCAAAAA CGCGCGCGCG chrV:13962191-13962271 27 1.38e-05 GCGCGGCAAC TGCAAAAA AGGGCGGAGC chrIV:12417172-12417252 65 1.38e-05 ACTGAAATTC TGCAAAAA CCATAGGT chrV:14855733-14855813 29 1.38e-05 AAAAACATTT TGCAAAAA AATTCCAAAA chrIII:5555092-5555172 37 2.83e-05 GGGGCACTTG CGCAAAAA GCGCGCGCAC chrI:6446624-6446704 2 2.83e-05 G CGCAAAAA TGGAAGTGCA chrII:5772881-5772961 24 2.83e-05 TTTCCGAATA CGCAAAAA GTTTAGCACG chrIV:8015996-8016076 59 4.12e-05 AGAAGAAAAT TTCAAAAA TCAACGTGCG chrIII:10856999-10857079 46 4.12e-05 CCATGGTGAC TTCAAAAA CTTCAAGTTT chrIV:16946940-16947020 16 5.56e-05 GCGCGCCGCT TGCAAAAC TGGGCGGAGC chrI:3873916-3873996 60 5.56e-05 cgccgcacat tgcAAAAC TGCAAATGGG chrX:1880796-1880876 9 6.87e-05 TTTATTTG TACAAAAA GTTTGGGCCG chrIII:1824624-1824704 46 8.22e-05 TTCATATCGC CTCAAAAA AAAGTCCGAT chrII:10336309-10336389 32 8.22e-05 TAACCATTCA CTCAAAAA TATGACTCTA chrII:7708709-7708789 2 9.70e-05 C GGCAAAAA TGACAGTGGG chrII:2570622-2570702 41 9.70e-05 CTAAAAAACC GGCAAAAA AAATCTTTAA chrII:6741543-6741623 62 1.12e-04 CTCCGGTGTC TGCGAAAA TTGTTGCGAG chrIII:3499989-3500069 71 1.12e-04 AAAGAGGATC TGCGAAAA TG chrX:9296778-9296858 62 1.27e-04 TTATTGAGGA CGCAAAAC CCCACCGCTA chrIII:8768071-8768151 73 1.40e-04 CAACTCCGCC CACAAAAA chrI:9512224-9512304 69 1.40e-04 ACAGGAGGCC CACAAAAA AGGG chrII:12494707-12494787 3 1.68e-04 TT TTCAAAAC CCTCCTTCTC chrX:1379580-1379660 10 1.68e-04 TCACCACTT TTCAAAAC ATTTCTGCGT chrI:14737474-14737554 7 1.68e-04 GCCCTT TGCAAAAT GTGTGCGCAC chrI:852183-852263 12 1.68e-04 AGTGAGGGTT TGCAAAAT TTGGGCTGTG chrIV:16398331-16398411 19 1.68e-04 ACCCACTAGA TTCAAAAC GGCACCCACA chrIII:3916770-3916850 22 1.83e-04 TGAAAACCCC CGCGAAAA CCTAAAGTGT chrV:979742-979822 61 1.83e-04 GAGCCCTCCC CGCGAAAA CTTTTTTCTT chrIII:5715731-5715811 11 3.10e-04 CAGCGAACAA GACAAAAA GCAGCGTCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCAAAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5295026-5295106 1.4e-05 23_[+4]_49 chrI:1175819-1175899 1.4e-05 48_[+4]_24 chrX:10821296-10821376 1.4e-05 10_[+4]_62 chrIV:1388154-1388234 1.4e-05 9_[+4]_63 chrV:4731532-4731612 1.4e-05 58_[+4]_14 chrV:13962191-13962271 1.4e-05 26_[+4]_46 chrIV:12417172-12417252 1.4e-05 64_[+4]_8 chrV:14855733-14855813 1.4e-05 28_[+4]_44 chrIII:5555092-5555172 2.8e-05 36_[+4]_36 chrI:6446624-6446704 2.8e-05 1_[+4]_71 chrII:5772881-5772961 2.8e-05 23_[+4]_49 chrIV:8015996-8016076 4.1e-05 58_[+4]_14 chrIII:10856999-10857079 4.1e-05 45_[+4]_27 chrIV:16946940-16947020 5.6e-05 15_[+4]_57 chrI:3873916-3873996 5.6e-05 59_[+4]_13 chrX:1880796-1880876 6.9e-05 8_[+4]_64 chrIII:1824624-1824704 8.2e-05 45_[+4]_27 chrII:10336309-10336389 8.2e-05 31_[+4]_41 chrII:7708709-7708789 9.7e-05 1_[+4]_71 chrII:2570622-2570702 9.7e-05 40_[+4]_32 chrII:6741543-6741623 0.00011 61_[+4]_11 chrIII:3499989-3500069 0.00011 70_[+4]_2 chrX:9296778-9296858 0.00013 61_[+4]_11 chrIII:8768071-8768151 0.00014 72_[+4] chrI:9512224-9512304 0.00014 68_[+4]_4 chrII:12494707-12494787 0.00017 2_[+4]_70 chrX:1379580-1379660 0.00017 9_[+4]_63 chrI:14737474-14737554 0.00017 6_[+4]_66 chrI:852183-852263 0.00017 11_[+4]_61 chrIV:16398331-16398411 0.00017 18_[+4]_54 chrIII:3916770-3916850 0.00018 21_[+4]_51 chrV:979742-979822 0.00018 60_[+4]_12 chrIII:5715731-5715811 0.00031 10_[+4]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCAAAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGCAAAAA width=8 seqs=33 chrIII:5295026-5295106 ( 24) TGCAAAAA 1 chrI:1175819-1175899 ( 49) TGCAAAAA 1 chrX:10821296-10821376 ( 11) TGCAAAAA 1 chrIV:1388154-1388234 ( 10) TGCAAAAA 1 chrV:4731532-4731612 ( 59) TGCAAAAA 1 chrV:13962191-13962271 ( 27) TGCAAAAA 1 chrIV:12417172-12417252 ( 65) TGCAAAAA 1 chrV:14855733-14855813 ( 29) TGCAAAAA 1 chrIII:5555092-5555172 ( 37) CGCAAAAA 1 chrI:6446624-6446704 ( 2) CGCAAAAA 1 chrII:5772881-5772961 ( 24) CGCAAAAA 1 chrIV:8015996-8016076 ( 59) TTCAAAAA 1 chrIII:10856999-10857079 ( 46) TTCAAAAA 1 chrIV:16946940-16947020 ( 16) TGCAAAAC 1 chrI:3873916-3873996 ( 60) TGCAAAAC 1 chrX:1880796-1880876 ( 9) TACAAAAA 1 chrIII:1824624-1824704 ( 46) CTCAAAAA 1 chrII:10336309-10336389 ( 32) CTCAAAAA 1 chrII:7708709-7708789 ( 2) GGCAAAAA 1 chrII:2570622-2570702 ( 41) GGCAAAAA 1 chrII:6741543-6741623 ( 62) TGCGAAAA 1 chrIII:3499989-3500069 ( 71) TGCGAAAA 1 chrX:9296778-9296858 ( 62) CGCAAAAC 1 chrIII:8768071-8768151 ( 73) CACAAAAA 1 chrI:9512224-9512304 ( 69) CACAAAAA 1 chrII:12494707-12494787 ( 3) TTCAAAAC 1 chrX:1379580-1379660 ( 10) TTCAAAAC 1 chrI:14737474-14737554 ( 7) TGCAAAAT 1 chrI:852183-852263 ( 12) TGCAAAAT 1 chrIV:16398331-16398411 ( 19) TTCAAAAC 1 chrIII:3916770-3916850 ( 22) CGCGAAAA 1 chrV:979742-979822 ( 61) CGCGAAAA 1 chrIII:5715731-5715811 ( 11) GACAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCAAAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4541 E= 6.3e-001 -1169 26 -151 132 -101 -1169 136 -20 -1169 198 -1169 -1169 185 -1169 -110 -1169 204 -1169 -1169 -1169 204 -1169 -1169 -1169 204 -1169 -1169 -1169 164 -48 -1169 -200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCAAAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 6.3e-001 0.000000 0.303030 0.090909 0.606061 0.121212 0.000000 0.666667 0.212121 0.000000 1.000000 0.000000 0.000000 0.878788 0.000000 0.121212 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.757576 0.181818 0.000000 0.060606 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCAAAAA MEME-4 regular expression -------------------------------------------------------------------------------- [TC][GT]CAAAAA -------------------------------------------------------------------------------- Time 15.90 secs. ******************************************************************************** ******************************************************************************** MOTIF GTAGAGCG MEME-5 width = 8 sites = 16 llr = 159 E-value = 7.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTAGAGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a:a::: pos.-specific C ::::::a: probability G 83:a:a:a matrix T 28:::::: bits 2.0 ****** 1.8 ****** 1.6 ****** 1.4 ****** Relative 1.2 ******** Entropy 1.0 ******** (14.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTAGAGCG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGAGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:5105242-5105322 19 1.65e-05 CACTCAATTC GTAGAGCG CGCACGCTAA chrX:12563763-12563843 42 1.65e-05 TAGCTCAGTG GTAGAGCG TTGGTCTTGT chrV:9503531-9503611 48 1.65e-05 TAGCTCAGGG GTAGAGCG CTCGCTTCGC chrIII:5305849-5305929 73 1.65e-05 TAGCTCAGTG GTAGAGCG chrIV:16399193-16399273 8 1.65e-05 CTCAGTG GTAGAGCG CTCCCTTAGC chrIII:535360-535440 40 1.65e-05 AGCTCAGTTG GTAGAGCG GAGGACTGTA chrIV:16398331-16398411 70 1.65e-05 TAGCTCAGTG GTAGAGCG CTC chrII:7001606-7001686 38 1.65e-05 TAGCTCAGGG GTAGAGCG CTCGCTTTGC chrX:4222462-4222542 21 1.65e-05 CAATGGGTGT GTAGAGCG AGAGAGACGG chrV:19126043-19126123 19 3.42e-05 AGCTCAGTTG GGAGAGCG CACGACTGAA chrIII:8653058-8653138 15 3.42e-05 AGCTCAGTTG GGAGAGCG TACGACTGAA chrX:16551508-16551588 21 3.42e-05 AGCTCAGTTG GGAGAGCG TACGACTGAA chrX:12407515-12407595 72 3.42e-05 AGTTGCGGTT GGAGAGCG G chrII:12494707-12494787 53 4.97e-05 GCTCAGTCGG TTAGAGCG TGGGTCTAAT chrIII:5295026-5295106 55 4.97e-05 TGCCATTATA TTAGAGCG CATGCAAAAA chrX:15297471-15297551 19 4.97e-05 GCTCAGTCGG TTAGAGCG TGGGTCTAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGAGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:5105242-5105322 1.7e-05 18_[+5]_54 chrX:12563763-12563843 1.7e-05 41_[+5]_31 chrV:9503531-9503611 1.7e-05 47_[+5]_25 chrIII:5305849-5305929 1.7e-05 72_[+5] chrIV:16399193-16399273 1.7e-05 7_[+5]_65 chrIII:535360-535440 1.7e-05 39_[+5]_33 chrIV:16398331-16398411 1.7e-05 69_[+5]_3 chrII:7001606-7001686 1.7e-05 37_[+5]_35 chrX:4222462-4222542 1.7e-05 20_[+5]_52 chrV:19126043-19126123 3.4e-05 18_[+5]_54 chrIII:8653058-8653138 3.4e-05 14_[+5]_58 chrX:16551508-16551588 3.4e-05 20_[+5]_52 chrX:12407515-12407595 3.4e-05 71_[+5]_1 chrII:12494707-12494787 5e-05 52_[+5]_20 chrIII:5295026-5295106 5e-05 54_[+5]_18 chrX:15297471-15297551 5e-05 18_[+5]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGAGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTAGAGCG width=8 seqs=16 chrII:5105242-5105322 ( 19) GTAGAGCG 1 chrX:12563763-12563843 ( 42) GTAGAGCG 1 chrV:9503531-9503611 ( 48) GTAGAGCG 1 chrIII:5305849-5305929 ( 73) GTAGAGCG 1 chrIV:16399193-16399273 ( 8) GTAGAGCG 1 chrIII:535360-535440 ( 40) GTAGAGCG 1 chrIV:16398331-16398411 ( 70) GTAGAGCG 1 chrII:7001606-7001686 ( 38) GTAGAGCG 1 chrX:4222462-4222542 ( 21) GTAGAGCG 1 chrV:19126043-19126123 ( 19) GGAGAGCG 1 chrIII:8653058-8653138 ( 15) GGAGAGCG 1 chrX:16551508-16551588 ( 21) GGAGAGCG 1 chrX:12407515-12407595 ( 72) GGAGAGCG 1 chrII:12494707-12494787 ( 53) TTAGAGCG 1 chrIII:5295026-5295106 ( 55) TTAGAGCG 1 chrX:15297471-15297551 ( 19) TTAGAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGAGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8918 E= 7.9e-001 -1064 -1064 165 -37 -1064 -1064 -5 162 204 -1064 -1064 -1064 -1064 -1064 195 -1064 204 -1064 -1064 -1064 -1064 -1064 195 -1064 -1064 198 -1064 -1064 -1064 -1064 195 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGAGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 7.9e-001 0.000000 0.000000 0.812500 0.187500 0.000000 0.000000 0.250000 0.750000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGAGCG MEME-5 regular expression -------------------------------------------------------------------------------- G[TG]AGAGCG -------------------------------------------------------------------------------- Time 19.45 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5056379-5056459 1.00e+00 80 chrI:933476-933556 9.23e-01 80 chrIV:11071028-11071108 9.99e-01 80 chrII:10336309-10336389 1.23e-01 31_[+4(8.22e-05)]_41 chrIII:931565-931645 9.87e-01 80 chrIII:3499989-3500069 6.16e-03 80 chrV:6222501-6222581 7.27e-02 80 chrII:13984986-13985066 9.94e-01 80 chrII:5097684-5097764 8.06e-01 80 chrIII:445695-445775 1.00e+00 80 chrV:12510128-12510208 1.00e+00 80 chrX:8156132-8156212 4.43e-01 80 chrV:5284760-5284840 9.60e-01 80 chrX:4222462-4222542 1.37e-01 20_[+5(1.65e-05)]_52 chrII:7883269-7883349 8.50e-01 80 chrV:9343855-9343935 1.08e-01 80 chrI:2299701-2299781 2.84e-02 80 chrX:1644103-1644183 7.34e-01 80 chrI:14847295-14847375 9.56e-01 80 chrX:4221586-4221666 6.93e-01 80 chrI:11609170-11609250 2.69e-01 80 chrIV:5334723-5334803 6.95e-01 80 chrII:2570622-2570702 3.76e-01 40_[+4(9.70e-05)]_16_[+4(9.70e-05)]_\ 8 chrX:4961118-4961198 9.06e-01 80 chrIII:1122397-1122477 1.91e-02 43_[+2(3.14e-05)]_29 chrX:9296778-9296858 2.31e-01 80 chrV:18720323-18720403 2.70e-01 80 chrX:14877766-14877846 8.64e-01 80 chrIII:1824624-1824704 3.87e-02 45_[+4(8.22e-05)]_27 chrII:7001606-7001686 6.19e-04 27_[+2(1.52e-05)]_2_[+5(1.65e-05)]_\ 35 chrX:9078306-9078386 4.90e-01 80 chrV:8785791-8785871 9.10e-01 80 chrV:979742-979822 9.13e-02 80 chrI:4175915-4175995 5.16e-01 80 chrIV:1377766-1377846 5.88e-01 80 chrIV:1914173-1914253 8.34e-01 80 chrIV:2639805-2639885 2.21e-01 80 chrV:14855733-14855813 5.03e-04 28_[+4(1.38e-05)]_44 chrI:13637373-13637453 4.42e-01 80 chrV:1153356-1153436 4.95e-01 80 chrI:10757144-10757224 7.94e-01 80 chrX:13653759-13653839 1.59e-01 80 chrX:12407515-12407595 1.67e-01 71_[+5(3.42e-05)]_1 chrII:14635326-14635406 6.01e-03 23_[+1(1.56e-05)]_49 chrIII:12688758-12688838 7.30e-01 80 chrIII:3664394-3664474 5.42e-01 80 chrIV:1981110-1981190 5.19e-01 80 chrV:16699942-16700022 9.99e-01 80 chrX:14115637-14115717 9.91e-01 80 chrIV:12417172-12417252 4.40e-03 64_[+4(1.38e-05)]_8 chrX:2852336-2852416 4.25e-01 80 chrI:9268914-9268994 1.42e-02 28_[+1(3.11e-05)]_44 chrX:12890333-12890413 4.16e-03 8_[+3(4.77e-05)]_64 chrX:5686278-5686358 1.20e-01 80 chrX:15520230-15520310 1.11e-01 80 chrIV:385253-385333 4.33e-02 80 chrII:5772881-5772961 1.36e-03 23_[+4(2.83e-05)]_18_[+1(1.56e-05)]_\ 23 chrIV:15932056-15932136 1.08e-01 80 chrV:53450-53530 9.70e-01 80 chrV:19343556-19343636 9.91e-01 80 chrIV:16398331-16398411 4.60e-05 59_[+2(1.52e-05)]_2_[+5(1.65e-05)]_\ 3 chrI:6136538-6136618 5.53e-03 65_[+2(1.52e-05)]_7 chrX:13415146-13415226 4.84e-02 32_[+3(4.77e-05)]_40 chrIII:11958187-11958267 9.62e-01 80 chrI:13310349-13310429 6.48e-02 52_[+3(4.77e-05)]_20 chrX:16551508-16551588 1.19e-04 9_[+2(1.52e-05)]_3_[+5(3.42e-05)]_\ 52 chrX:7573579-7573659 7.02e-01 80 chrIII:6133577-6133657 9.98e-01 80 chrX:4752872-4752952 7.98e-01 80 chrI:367302-367382 8.64e-01 80 chrI:2803344-2803424 9.13e-01 80 chrX:14229577-14229657 1.00e+00 80 chrI:2889914-2889994 9.28e-01 80 chrII:7708709-7708789 2.20e-01 1_[+4(9.70e-05)]_71 chrIII:1327117-1327197 9.64e-01 80 chrII:11959396-11959476 9.97e-02 32_[+1(3.11e-05)]_40 chrIII:13225160-13225240 1.21e-02 16_[+1(7.73e-05)]_35_[+3(9.46e-05)]_\ 13 chrIII:5503881-5503961 6.26e-01 80 chrX:5319401-5319481 1.94e-01 41_[+3(4.77e-05)]_31 chrX:14804901-14804981 6.59e-01 80 chrX:3969485-3969565 9.50e-01 80 chrIII:8106690-8106770 2.12e-01 80 chrIII:10856999-10857079 1.97e-01 45_[+4(4.12e-05)]_27 chrX:14975697-14975777 7.10e-01 80 chrI:9605774-9605854 1.05e-01 44_[+1(1.56e-05)]_28 chrV:12332021-12332101 1.24e-01 1_[+3(9.46e-05)]_71 chrIV:14576637-14576717 4.70e-01 80 chrV:14876412-14876492 5.03e-02 34_[+3(4.77e-05)]_38 chrV:16593485-16593565 4.62e-01 80 chrII:6248672-6248752 5.09e-02 29_[+1(6.23e-05)]_43 chrV:15505216-15505296 2.94e-03 6_[+1(1.56e-05)]_66 chrIV:8431716-8431796 4.63e-01 80 chrX:15277877-15277957 3.82e-01 80 chrI:9953498-9953578 9.75e-01 80 chrIII:8653058-8653138 1.10e-04 3_[+2(1.52e-05)]_3_[+5(3.42e-05)]_\ 58 chrV:11638849-11638929 5.96e-02 80 chrI:14721582-14721662 2.57e-01 80 chrIII:5755430-5755510 1.09e-01 80 chrIV:3233015-3233095 3.66e-01 64_[+1(6.23e-05)]_8 chrIV:9191318-9191398 1.39e-01 80 chrV:18712121-18712201 7.46e-01 80 chrII:3439428-3439508 1.23e-01 23_[+3(4.77e-05)]_49 chrI:9512224-9512304 1.67e-01 80 chrV:16553047-16553127 7.51e-01 80 chrIII:535360-535440 9.69e-04 28_[+2(1.52e-05)]_3_[+5(1.65e-05)]_\ 33 chrI:11095919-11095999 8.21e-01 80 chrV:13393517-13393597 8.80e-01 80 chrV:13962191-13962271 5.27e-02 26_[+4(1.38e-05)]_46 chrV:15551825-15551905 9.10e-01 80 chrV:14038590-14038670 1.22e-01 80 chrIV:3524775-3524855 7.05e-01 80 chrV:4491690-4491770 9.11e-01 80 chrIV:2603790-2603870 4.36e-01 80 chrIII:3916770-3916850 1.35e-01 80 chrIV:9074385-9074465 8.16e-01 80 chrII:10202449-10202529 2.59e-01 80 chrX:6252273-6252353 9.73e-01 80 chrV:7231037-7231117 5.87e-01 80 chrX:8971581-8971661 8.24e-01 80 chrV:4731532-4731612 8.31e-02 58_[+4(1.38e-05)]_14 chrIII:5308418-5308498 5.25e-01 80 chrI:5176381-5176461 4.81e-01 80 chrX:4444193-4444273 9.53e-01 80 chrV:12780432-12780512 4.53e-01 80 chrII:11157794-11157874 1.31e-03 22_[+1(1.56e-05)]_35_[+3(4.77e-05)]_\ 7 chrIV:1388154-1388234 1.06e-01 9_[+4(1.38e-05)]_23_[+4(1.38e-05)]_\ 32 chrIV:16399193-16399273 6.99e-02 7_[+5(1.65e-05)]_65 chrX:8638891-8638971 4.42e-02 37_[+2(1.52e-05)]_35 chrI:6446624-6446704 1.08e-03 1_[+4(2.83e-05)]_71 chrII:6913465-6913545 3.21e-01 80 chrIV:11026148-11026228 1.31e-01 9_[+1(4.60e-05)]_63 chrX:5708003-5708083 8.22e-01 80 chrX:1858750-1858830 9.95e-01 80 chrV:19622533-19622613 8.10e-01 80 chrX:10821296-10821376 1.84e-03 10_[+4(1.38e-05)]_27_[+1(1.56e-05)]_\ 27 chrI:7543548-7543628 1.93e-01 80 chrI:10927494-10927574 3.33e-01 80 chrX:1837819-1837899 4.53e-02 23_[+1(7.73e-05)]_49 chrII:6741543-6741623 2.05e-01 80 chrII:8547126-8547206 8.90e-01 80 chrIV:9477726-9477806 1.04e-01 30_[+3(3.25e-05)]_42 chrIII:5305849-5305929 1.43e-03 62_[+2(1.52e-05)]_2_[+5(1.65e-05)] chrI:488387-488467 9.46e-01 80 chrI:1575664-1575744 9.36e-01 80 chrV:19126043-19126123 1.01e-04 7_[+2(1.52e-05)]_3_[+5(3.42e-05)]_\ 54 chrV:7728393-7728473 5.06e-01 80 chrX:8386129-8386209 4.36e-01 80 chrIII:1601618-1601698 2.60e-01 80 chrX:6220065-6220145 9.08e-03 19_[+1(4.60e-05)]_35_[+3(9.46e-05)]_\ 10 chrII:10169392-10169472 8.74e-01 80 chrV:11239324-11239404 4.31e-01 80 chrV:2638689-2638769 8.78e-01 80 chrIII:7729882-7729962 9.69e-01 80 chrI:1823128-1823208 3.96e-01 80 chrIII:10624740-10624820 4.28e-03 16_[+1(7.73e-05)]_34_[+3(1.59e-05)]_\ 14 chrX:9637868-9637948 8.55e-02 40_[+3(4.77e-05)]_32 chrIII:4369533-4369613 2.32e-01 80 chrIII:1604724-1604804 1.58e-01 80 chrI:13160993-13161073 9.95e-01 80 chrIII:5715731-5715811 2.97e-02 80 chrIII:4568698-4568778 3.27e-01 80 chrI:1415952-1416032 7.50e-01 80 chrI:9343865-9343945 1.11e-01 80 chrI:1175819-1175899 8.06e-02 48_[+4(1.38e-05)]_24 chrII:3521513-3521593 6.25e-01 80 chrII:9774862-9774942 4.59e-02 24_[+3(3.25e-05)]_48 chrII:9566210-9566290 7.67e-01 80 chrIII:5555092-5555172 2.12e-02 36_[+4(2.83e-05)]_36 chrI:2935737-2935817 1.63e-01 80 chrX:15297471-15297551 4.84e-06 6_[+2(1.52e-05)]_4_[+5(4.97e-05)]_\ 28_[+1(6.23e-05)]_18 chrI:852183-852263 1.34e-02 46_[+3(3.25e-05)]_26 chrIII:11371427-11371507 3.83e-01 80 chrI:9373021-9373101 9.02e-02 80 chrIV:16776096-16776176 7.32e-01 80 chrIV:620460-620540 6.95e-01 80 chrIV:14225024-14225104 8.34e-01 80 chrV:12596880-12596960 4.67e-01 80 chrIII:11142253-11142333 7.57e-01 80 chrX:11643923-11644003 9.31e-01 80 chrIII:12399942-12400022 2.11e-01 80 chrV:6888995-6889075 2.70e-01 80 chrII:5358347-5358427 7.15e-01 80 chrIV:14838307-14838387 2.49e-02 27_[+1(1.56e-05)]_45 chrI:2410114-2410194 1.55e-03 63_[+1(3.11e-05)]_9 chrIII:6453807-6453887 2.08e-01 80 chrIV:322628-322708 1.98e-01 18_[+1(9.22e-05)]_54 chrX:16928326-16928406 5.27e-02 80 chrIII:5295026-5295106 1.62e-05 9_[+3(3.25e-05)]_6_[+4(1.38e-05)]_\ 23_[+5(4.97e-05)]_2_[+4(1.38e-05)]_8 chrIII:9104208-9104288 1.33e-02 13_[+1(7.73e-05)]_35_[+3(9.46e-05)]_\ 16 chrIII:4171151-4171231 4.90e-01 80 chrI:11505559-11505639 7.22e-01 80 chrX:11467355-11467435 1.06e-01 80 chrIII:8768071-8768151 9.02e-02 80 chrI:8530104-8530184 4.87e-03 38_[+1(1.56e-05)]_34 chrV:9503531-9503611 4.80e-04 37_[+2(1.52e-05)]_2_[+5(1.65e-05)]_\ 25 chrX:13264718-13264798 8.91e-02 33_[+3(4.77e-05)]_39 chrX:6593530-6593610 1.56e-02 72_[+2(1.52e-05)] chrX:10963814-10963894 7.75e-01 80 chrX:13121280-13121360 1.52e-01 80 chrX:11644124-11644204 9.54e-01 80 chrIII:9861649-9861729 4.36e-01 80 chrIV:143923-144003 8.00e-01 80 chrI:1958534-1958614 3.96e-01 80 chrIV:17087587-17087667 9.97e-01 80 chrI:3873916-3873996 6.12e-02 59_[+4(5.56e-05)]_13 chrV:16592252-16592332 2.21e-01 80 chrI:11978747-11978827 7.22e-01 80 chrI:14737474-14737554 1.39e-01 80 chrX:1379580-1379660 9.01e-03 37_[+1(1.56e-05)]_35 chrV:9318115-9318195 1.00e+00 80 chrII:8107249-8107329 1.58e-01 80 chrX:1880796-1880876 3.09e-03 8_[+4(6.87e-05)]_19_[+1(1.56e-05)]_\ 37 chrIV:8015996-8016076 1.16e-01 58_[+4(4.12e-05)]_14 chrIII:4470906-4470986 4.17e-01 80 chrX:12458220-12458300 8.97e-02 12_[+3(4.77e-05)]_60 chrIV:11549889-11549969 6.26e-01 80 chrI:10807261-10807341 9.79e-01 80 chrX:12563763-12563843 1.63e-04 31_[+2(1.52e-05)]_2_[+5(1.65e-05)]_\ 31 chrX:15742022-15742102 9.75e-01 80 chrIII:3175141-3175221 4.01e-01 80 chrV:13003528-13003608 1.23e-01 37_[+3(4.77e-05)]_35 chrII:4942496-4942576 8.30e-02 71_[+3(3.25e-05)]_1 chrV:19522626-19522706 3.02e-01 80 chrX:5022869-5022949 2.64e-01 80 chrI:2514285-2514365 8.94e-02 28_[+1(9.22e-05)]_44 chrI:13331096-13331176 2.96e-02 65_[+1(1.56e-05)]_7 chrX:353256-353336 6.01e-03 13_[+1(1.56e-05)]_59 chrX:3371438-3371518 8.84e-02 40_[+3(1.59e-05)]_32 chrX:3697724-3697804 4.15e-02 38_[+2(3.14e-05)]_34 chrX:11252626-11252706 2.85e-03 21_[+3(9.46e-05)]_51 chrII:12494707-12494787 1.21e-05 40_[+2(1.52e-05)]_4_[+5(4.97e-05)]_\ 20 chrIV:8253014-8253094 6.46e-01 80 chrIII:11792721-11792801 1.07e-02 67_[+2(1.52e-05)]_5 chrIII:8937681-8937761 1.96e-01 80 chrIII:5602199-5602279 7.87e-01 80 chrI:9267092-9267172 2.33e-01 80 chrIV:16946940-16947020 8.78e-03 15_[+4(5.56e-05)]_57 chrIII:8678521-8678601 6.56e-03 32_[+3(9.46e-05)]_40 chrII:9940578-9940658 9.50e-01 80 chrII:7200213-7200293 7.82e-02 80 chrX:6371315-6371395 8.49e-01 80 chrIV:16382340-16382420 3.58e-01 80 chrI:11374400-11374480 9.49e-01 80 chrX:3970109-3970189 8.01e-02 39_[+1(3.11e-05)]_33 chrIII:5211384-5211464 6.75e-01 80 chrX:16604738-16604818 3.48e-01 80 chrIV:12594743-12594823 3.99e-04 3_[+2(1.52e-05)]_69 chrII:5105242-5105322 1.31e-02 18_[+5(1.65e-05)]_54 chrX:9467743-9467823 1.16e-01 [+1(9.22e-05)]_72 chrII:7184064-7184144 1.60e-02 64_[+3(3.25e-05)]_8 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************