******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/hlh-11.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:8413061-8413141 1.0000 80 chrIV:1065729-1065809 1.0000 80 chrX:7636214-7636294 1.0000 80 chrX:670735-670815 1.0000 80 chrIV:17174236-17174316 1.0000 80 chrX:17197970-17198050 1.0000 80 chrV:15192575-15192655 1.0000 80 chrII:7815065-7815145 1.0000 80 chrIII:5981587-5981667 1.0000 80 chrII:13814129-13814209 1.0000 80 chrX:5813260-5813340 1.0000 80 chrIV:10970479-10970559 1.0000 80 chrIV:1379124-1379204 1.0000 80 chrX:12780834-12780914 1.0000 80 chrII:9325716-9325796 1.0000 80 chrII:9301201-9301281 1.0000 80 chrV:10878328-10878408 1.0000 80 chrX:12186258-12186338 1.0000 80 chrX:3842660-3842740 1.0000 80 chrII:13166002-13166082 1.0000 80 chrII:9974349-9974429 1.0000 80 chrII:2834257-2834337 1.0000 80 chrI:13104177-13104257 1.0000 80 chrV:13212727-13212807 1.0000 80 chrII:4942990-4943070 1.0000 80 chrI:7740012-7740092 1.0000 80 chrII:13073286-13073366 1.0000 80 chrX:6665589-6665669 1.0000 80 chrV:8648398-8648478 1.0000 80 chrV:6524895-6524975 1.0000 80 chrI:9386020-9386100 1.0000 80 chrIV:13057594-13057674 1.0000 80 chrIV:1064478-1064558 1.0000 80 chrV:10190354-10190434 1.0000 80 chrX:14071091-14071171 1.0000 80 chrV:18782880-18782960 1.0000 80 chrX:13257704-13257784 1.0000 80 chrI:13381558-13381638 1.0000 80 chrIV:17171913-17171993 1.0000 80 chrIII:2870363-2870443 1.0000 80 chrX:13334014-13334094 1.0000 80 chrII:12980409-12980489 1.0000 80 chrX:11481135-11481215 1.0000 80 chrIV:1035265-1035345 1.0000 80 chrI:2800849-2800929 1.0000 80 chrIV:9160008-9160088 1.0000 80 chrII:4770028-4770108 1.0000 80 chrV:6523038-6523118 1.0000 80 chrIV:10463297-10463377 1.0000 80 chrV:16278067-16278147 1.0000 80 chrX:7445916-7445996 1.0000 80 chrX:8604322-8604402 1.0000 80 chrIII:12327688-12327768 1.0000 80 chrI:12343541-12343621 1.0000 80 chrV:2731213-2731293 1.0000 80 chrI:5031143-5031223 1.0000 80 chrIV:12936525-12936605 1.0000 80 chrII:8001601-8001681 1.0000 80 chrI:545691-545771 1.0000 80 chrI:1914023-1914103 1.0000 80 chrI:6081568-6081648 1.0000 80 chrIII:1220136-1220216 1.0000 80 chrV:8425280-8425360 1.0000 80 chrV:11941832-11941912 1.0000 80 chrIII:10566083-10566163 1.0000 80 chrIII:11197447-11197527 1.0000 80 chrX:2695423-2695503 1.0000 80 chrV:14640949-14641029 1.0000 80 chrV:5030345-5030425 1.0000 80 chrV:8403320-8403400 1.0000 80 chrX:4698432-4698512 1.0000 80 chrI:10231797-10231877 1.0000 80 chrIII:936272-936352 1.0000 80 chrV:11975377-11975457 1.0000 80 chrV:9491750-9491830 1.0000 80 chrV:10801275-10801355 1.0000 80 chrIII:3370189-3370269 1.0000 80 chrIV:7233614-7233694 1.0000 80 chrV:13049247-13049327 1.0000 80 chrIV:10795846-10795926 1.0000 80 chrIII:7758708-7758788 1.0000 80 chrV:5027809-5027889 1.0000 80 chrII:9231414-9231494 1.0000 80 chrII:5323966-5324046 1.0000 80 chrV:12467930-12468010 1.0000 80 chrI:7287902-7287982 1.0000 80 chrX:15424215-15424295 1.0000 80 chrIV:10469678-10469758 1.0000 80 chrII:5748536-5748616 1.0000 80 chrIII:7479088-7479168 1.0000 80 chrV:13606995-13607075 1.0000 80 chrV:9255655-9255735 1.0000 80 chrX:10477700-10477780 1.0000 80 chrIV:7393885-7393965 1.0000 80 chrIII:946481-946561 1.0000 80 chrV:20752792-20752872 1.0000 80 chrX:4102321-4102401 1.0000 80 chrX:6456732-6456812 1.0000 80 chrIV:3158335-3158415 1.0000 80 chrIII:12849836-12849916 1.0000 80 chrI:10753118-10753198 1.0000 80 chrIV:10761547-10761627 1.0000 80 chrIV:9118544-9118624 1.0000 80 chrIV:12199837-12199917 1.0000 80 chrV:11470392-11470472 1.0000 80 chrV:9791481-9791561 1.0000 80 chrIV:12197828-12197908 1.0000 80 chrII:7639216-7639296 1.0000 80 chrIV:11289113-11289193 1.0000 80 chrII:1949291-1949371 1.0000 80 chrX:3153330-3153410 1.0000 80 chrIII:9289998-9290078 1.0000 80 chrI:3113706-3113786 1.0000 80 chrX:16550739-16550819 1.0000 80 chrII:5585935-5586015 1.0000 80 chrV:8949159-8949239 1.0000 80 chrI:5810131-5810211 1.0000 80 chrX:5944065-5944145 1.0000 80 chrII:8625273-8625353 1.0000 80 chrIII:2760902-2760982 1.0000 80 chrV:7786810-7786890 1.0000 80 chrI:6389771-6389851 1.0000 80 chrI:7354320-7354400 1.0000 80 chrIII:11881722-11881802 1.0000 80 chrIV:1068885-1068965 1.0000 80 chrII:11153269-11153349 1.0000 80 chrV:10870179-10870259 1.0000 80 chrX:2439854-2439934 1.0000 80 chrX:6517530-6517610 1.0000 80 chrII:12879939-12880019 1.0000 80 chrI:6418830-6418910 1.0000 80 chrIII:11026782-11026862 1.0000 80 chrII:9620344-9620424 1.0000 80 chrIII:13059493-13059573 1.0000 80 chrIII:6169058-6169138 1.0000 80 chrX:6653337-6653417 1.0000 80 chrX:13803383-13803463 1.0000 80 chrX:11680954-11681034 1.0000 80 chrX:1272690-1272770 1.0000 80 chrX:9540600-9540680 1.0000 80 chrIII:3764158-3764238 1.0000 80 chrV:14503252-14503332 1.0000 80 chrX:10231046-10231126 1.0000 80 chrIII:7453837-7453917 1.0000 80 chrX:6530749-6530829 1.0000 80 chrV:10802234-10802314 1.0000 80 chrV:10693906-10693986 1.0000 80 chrX:10480736-10480816 1.0000 80 chrV:5192677-5192757 1.0000 80 chrIII:4506878-4506958 1.0000 80 chrIII:3253882-3253962 1.0000 80 chrX:17139520-17139600 1.0000 80 chrIV:12046979-12047059 1.0000 80 chrV:16357426-16357506 1.0000 80 chrX:12781896-12781976 1.0000 80 chrV:18826598-18826678 1.0000 80 chrIII:6179200-6179280 1.0000 80 chrII:9291786-9291866 1.0000 80 chrIII:5814859-5814939 1.0000 80 chrV:12512940-12513020 1.0000 80 chrV:12475516-12475596 1.0000 80 chrV:15666875-15666955 1.0000 80 chrX:13221540-13221620 1.0000 80 chrV:3388477-3388557 1.0000 80 chrIII:9930514-9930594 1.0000 80 chrX:6025150-6025230 1.0000 80 chrV:8768627-8768707 1.0000 80 chrIII:9722208-9722288 1.0000 80 chrX:14214661-14214741 1.0000 80 chrI:6416926-6417006 1.0000 80 chrII:3911424-3911504 1.0000 80 chrI:4099680-4099760 1.0000 80 chrX:8932534-8932614 1.0000 80 chrIII:13626838-13626918 1.0000 80 chrII:915387-915467 1.0000 80 chrIII:1028405-1028485 1.0000 80 chrIV:4486894-4486974 1.0000 80 chrV:15888024-15888104 1.0000 80 chrI:5309759-5309839 1.0000 80 chrV:348134-348214 1.0000 80 chrX:8440211-8440291 1.0000 80 chrX:12230488-12230568 1.0000 80 chrIV:3613358-3613438 1.0000 80 chrV:10256178-10256258 1.0000 80 chrII:13668986-13669066 1.0000 80 chrII:6615405-6615485 1.0000 80 chrV:7744214-7744294 1.0000 80 chrI:12552892-12552972 1.0000 80 chrX:14816857-14816937 1.0000 80 chrIII:12317645-12317725 1.0000 80 chrI:6294068-6294148 1.0000 80 chrII:14811626-14811706 1.0000 80 chrIV:8032318-8032398 1.0000 80 chrI:8302184-8302264 1.0000 80 chrX:8567330-8567410 1.0000 80 chrIII:4240313-4240393 1.0000 80 chrV:9679300-9679380 1.0000 80 chrX:5252911-5252991 1.0000 80 chrII:7695774-7695854 1.0000 80 chrI:10833507-10833587 1.0000 80 chrII:13079024-13079104 1.0000 80 chrIII:154340-154420 1.0000 80 chrIV:11284261-11284341 1.0000 80 chrII:8248927-8249007 1.0000 80 chrI:4804832-4804912 1.0000 80 chrIII:9326704-9326784 1.0000 80 chrII:7404226-7404306 1.0000 80 chrV:19524789-19524869 1.0000 80 chrX:4564842-4564922 1.0000 80 chrX:11008225-11008305 1.0000 80 chrX:3290332-3290412 1.0000 80 chrIII:2725365-2725445 1.0000 80 chrII:162350-162430 1.0000 80 chrV:18701506-18701586 1.0000 80 chrX:1337174-1337254 1.0000 80 chrI:12500590-12500670 1.0000 80 chrX:440636-440716 1.0000 80 chrI:5388659-5388739 1.0000 80 chrI:6964443-6964523 1.0000 80 chrIV:3012550-3012630 1.0000 80 chrX:2580689-2580769 1.0000 80 chrX:11047335-11047415 1.0000 80 chrII:6520260-6520340 1.0000 80 chrX:17600311-17600391 1.0000 80 chrI:3710768-3710848 1.0000 80 chrI:14051943-14052023 1.0000 80 chrIV:8163810-8163890 1.0000 80 chrX:3829773-3829853 1.0000 80 chrV:10776834-10776914 1.0000 80 chrV:19205541-19205621 1.0000 80 chrIII:6180459-6180539 1.0000 80 chrII:7277402-7277482 1.0000 80 chrII:8387072-8387152 1.0000 80 chrX:9568756-9568836 1.0000 80 chrV:1607937-1608017 1.0000 80 chrX:6536838-6536918 1.0000 80 chrII:6026786-6026866 1.0000 80 chrI:5408448-5408528 1.0000 80 chrII:7273678-7273758 1.0000 80 chrX:5669885-5669965 1.0000 80 chrII:6413974-6414054 1.0000 80 chrII:8384512-8384592 1.0000 80 chrIV:14413564-14413644 1.0000 80 chrI:4073727-4073807 1.0000 80 chrX:11515527-11515607 1.0000 80 chrX:17504642-17504722 1.0000 80 chrII:6327485-6327565 1.0000 80 chrI:3672753-3672833 1.0000 80 chrIV:17245342-17245422 1.0000 80 chrII:6919611-6919691 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_hlh-11/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/hlh-11.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.292 C 0.204 G 0.212 T 0.292 Background letter frequencies (from file dataset with add-one prior applied): A 0.292 C 0.204 G 0.212 T 0.292 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTKATMAG MEME-1 width = 8 sites = 130 llr = 885 E-value = 1.9e-044 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::a:492 pos.-specific C 6::::6:2 probability G 2:5::::6 matrix T 2a5:a::: bits 2.3 2.1 1.8 * * 1.6 * ** Relative 1.4 * ** * Entropy 1.1 * **** (9.8 bits) 0.9 * **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTTATCAG consensus G A A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:7273678-7273758 20 3.23e-05 TTTCGTCTCT CTTATCAG TGTTAACGAG chrII:7277402-7277482 15 3.23e-05 TTTTCACTGT CTTATCAG TGTCACCGAA chrI:3710768-3710848 48 3.23e-05 GATAGGGTTT CTTATCAG TTTCAACTAA chrX:2580689-2580769 4 3.23e-05 TTT CTTATCAG TCATTACTAC chrV:18701506-18701586 28 3.23e-05 TATTGTGCAT CTTATCAG TTTGACCAGA chrIII:9326704-9326784 53 3.23e-05 CGCAACATTT CTTATCAG CAACTATCAA chrX:8567330-8567410 41 3.23e-05 TACTTTTGCC CTTATCAG TTAAAGAAGA chrIII:12317645-12317725 64 3.23e-05 AAACAGCTCT CTTATCAG TTATTGACT chrX:14816857-14816937 43 3.23e-05 GACATCACAT CTTATCAG CTGATTTTGA chrI:4099680-4099760 72 3.23e-05 TTCACACGTT CTTATCAG T chrV:10802234-10802314 73 3.23e-05 TCAACCTTCT CTTATCAG chrIII:11026782-11026862 4 3.23e-05 TCC CTTATCAG CGACGAGCTT chrI:6389771-6389851 1 3.23e-05 . CTTATCAG ACACAGTCAA chrIII:946481-946561 65 3.23e-05 AATAATTTTT CTTATCAG GTAACAGC chrII:5323966-5324046 39 3.23e-05 CATAGTGTCT CTTATCAG CTGCGTGTTT chrIII:936272-936352 58 3.23e-05 AATACTTTTT CTTATCAG TTTTCCGCTG chrI:10231797-10231877 17 3.23e-05 GGTTTCCTTT CTTATCAG AACGAATAGA chrV:14640949-14641029 22 3.23e-05 CTCGCTATTT CTTATCAG TATTTTGTTC chrII:4770028-4770108 49 3.23e-05 ATTGACAGCT CTTATCAG GGAGGGTGTG chrI:2800849-2800929 67 3.23e-05 AAATAAAAGT CTTATCAG TATGAT chrII:6520260-6520340 60 5.18e-05 CCATCGATCA CTGATAAG ACTTCATCAG chrIV:3012550-3012630 56 5.18e-05 GCAGGTGTCA CTGATAAG CTGATAAGCG chrII:13079024-13079104 31 5.18e-05 CTTTTGCCTA CTGATAAG GAAGTGGCGC chrI:8302184-8302264 60 5.18e-05 GAGCACACGG CTGATAAG GAAAGATATC chrIV:8032318-8032398 10 5.18e-05 AGACGTAAA CTGATAAG AACGACAACT chrIII:1028405-1028485 44 5.18e-05 CGCGTCATTA CTGATAAG AGAGGTAGTG chrIII:3253882-3253962 23 5.18e-05 GAACCACAAA CTGATAAG CTATCAGTAT chrI:7354320-7354400 60 5.18e-05 AAGAATTCGT CTGATAAG CCACGTAAAC chrII:7639216-7639296 28 5.18e-05 TGACGACTCT CTGATAAG CGATGACAAA chrX:15424215-15424295 50 5.18e-05 ACATGCGACA CTGATAAG GCGTGCCTTT chrIII:3370189-3370269 62 5.18e-05 AAAAGTTACT CTGATAAG ATAACAATAT chrV:9491750-9491830 5 5.18e-05 TATG CTGATAAG AGAAATGAGC chrV:11975377-11975457 26 5.18e-05 CGATCAAATA CTGATAAG AAGAAAAGGA chrX:4698432-4698512 70 5.18e-05 TGTCTAGCTA CTGATAAG CAA chrV:2731213-2731293 26 5.18e-05 GACCCGAAAA CTGATAAG ACTCCTGGTC chrI:14051943-14052023 62 1.43e-04 TTTTCTCATC CTTATCAC CACTTAATTT chrV:8768627-8768707 14 1.43e-04 GCCAATTTTT CTTATCAC TAGTCAAGAT chrV:18826598-18826678 1 1.43e-04 . CTTATCAC CATCTGATAT chrI:3113706-3113786 47 1.43e-04 GTCAAAAACA GTGATCAG CAGATTTGTG chrV:10801275-10801355 50 1.43e-04 TTTTTCGGGT CTTATCAC AATCAAATGC chrI:13104177-13104257 58 1.43e-04 CAATTTTGCT CTTATCAC ATTTATAGAA chrX:3842660-3842740 54 1.43e-04 ACTATTCTAG CTTATCAC TCTTATCGCG chrIV:10970479-10970559 71 1.43e-04 TTTCGGGATC CTTATCAC TG chrI:4073727-4073807 29 2.26e-04 AATCCTTTTG CTTATCAA CTGAACAAAT chrV:19205541-19205621 3 2.26e-04 TC CTTATCAA ATTTTGATGT chrV:10776834-10776914 55 2.26e-04 AGAGAATTGA GTTATCAG TGAAAACAGA chrX:11047335-11047415 69 2.26e-04 ACTTGAGTTT CTTATCAA CACT chrI:5388659-5388739 23 2.26e-04 ATGTTGATTA CTGATAAC TTCTATAAGA chrX:440636-440716 69 2.26e-04 TGATAAACAA CTGATAAC AGTT chrII:162350-162430 54 2.26e-04 ATAAACTCGG CTGATAAC ACAACATTTT chrIII:154340-154420 35 2.26e-04 ACTCTATCAG CTGATAAC CCGTTCTTCC chrI:6294068-6294148 1 2.26e-04 . CTTATCAA AAGCTACAGT chrIV:4486894-4486974 32 2.26e-04 ATTGTGAGCT GTTATCAG TGTCGGAAAC chrII:915387-915467 4 2.26e-04 CAG CTGATAAC ATTTTCGTTA chrIII:9722208-9722288 33 2.26e-04 TCATGAAATG GTTATCAG TTATGAAGTC chrV:12512940-12513020 44 2.26e-04 TTATGTCTTC CTTATCAA TTATATAAGT chrV:14503252-14503332 51 2.26e-04 GTCTGCCGCC CTTATCAA AATGATAATT chrX:2439854-2439934 44 2.26e-04 TTCAAACAGC GTTATCAG CCACTTATTC chrII:8625273-8625353 12 2.26e-04 TGAGTGAGCT CTTATCAA AAAGGACACT chrII:5585935-5586015 19 2.26e-04 TACACAGTTA CTGATAAC AGAGTGTGAT chrIV:10761547-10761627 70 2.26e-04 CCCTCCCAAA CTGATAAC TGT chrIV:3158335-3158415 14 2.26e-04 GATTGAGCAG CTGATAAC AGAGAAATGT chrV:20752792-20752872 22 2.26e-04 GTCAAACTCT CTTATCAA TCAGTGCTCT chrIV:7393885-7393965 68 2.26e-04 AAATTGGACT GTTATCAG AGACC chrV:11941832-11941912 44 2.26e-04 AGCAGCTCCT CTTATCAA TTTTGAATTT chrII:8001601-8001681 8 2.26e-04 TGTTCCT CTTATCAA ATGCAAGGAA chrX:14071091-14071171 52 2.26e-04 CAGCTGAAAA CTGATAAC AATCTCTGTG chrX:670735-670815 47 2.26e-04 GTAAAAATTC CTTATCAA GGTCAGCCTC chrII:6615405-6615485 26 3.26e-04 ACATCGAATG CTGATAAA AGCAACCAAG chrIV:3613358-3613438 1 3.26e-04 . TTTATCAG CACAAAGTGT chrV:12475516-12475596 30 3.26e-04 CAGGTGATAA GTGATAAG AACTCTGACT chrX:6530749-6530829 22 3.26e-04 CCACGTTCAA CTGATAAA AGAACGGTTC chrX:13803383-13803463 72 3.26e-04 ATAATAATCG GTGATAAG C chrIII:13059493-13059573 49 3.26e-04 GAACCGTCAA GTGATAAG AAACAGCAAA chrII:12879939-12880019 47 3.26e-04 TCGCCGTTTT TTTATCAG TTTATCACCA chrX:3153330-3153410 61 3.26e-04 GATTTCAGTG GTGATAAG GAAGCGTATG chrIV:12197828-12197908 44 3.26e-04 GAGAGAAACA GTGATAAG AGCAATCTAA chrIV:9118544-9118624 71 3.26e-04 AAATGCCGAA GTGATAAG AG chrX:13334014-13334094 27 3.26e-04 AGTCAGAAAG GTGATAAG CGCTTCGTGA chrIV:13057594-13057674 56 3.26e-04 AGGTTTTCGC GTGATAAG ACTCCTATAA chrII:13166002-13166082 7 3.26e-04 GTGATG GTGATAAG AACAAAAAAG chrI:5408448-5408528 44 4.18e-04 GACGGAGGGA TTGATAAG AAAATGGGAG chrI:10833507-10833587 8 4.18e-04 ACACTTT TTGATAAG GGCAACCGAG chrI:5309759-5309839 23 4.18e-04 CTATTCGTTG TTGATAAG CCGCGTTGGC chrX:8932534-8932614 33 4.18e-04 TGGCAGTTCA TTGATAAG ATAAAATGCA chrII:1949291-1949371 1 4.18e-04 . TTGATAAG CCTCGGTATT chrX:2695423-2695503 72 4.18e-04 AACAAGGTGA TTGATAAG A chrIII:5981587-5981667 65 4.18e-04 ACCGAGTGTG TTGATAAG ATGATAAG chrV:8425280-8425360 35 4.32e-04 CAATTTTCAT GTGATCAC ATCGAAAAGA chrV:13212727-13212807 66 4.51e-04 ACTCTCCAAT ATGATCAG CAACATT chrIII:9289998-9290078 15 5.00e-04 AAATTCAAGT TTTATAAG CATCGACGAC chrX:6536838-6536918 11 5.75e-04 ACACGTGCCT TTGATCAC AATTCCTTAT chrII:8387072-8387152 11 5.75e-04 AGCGAAGACT CTAATCAG GCTACAACTA chrV:10693906-10693986 45 5.75e-04 CATTCAATTT CTAATCAG TTTTCTGTTT chrII:11153269-11153349 56 5.75e-04 GGAAACGCGC GTTATCAC CGAGAGTGGG chrV:8403320-8403400 32 5.75e-04 CACTGATGAT GTGATCAA ACAAATGGTA chrIII:11197447-11197527 43 5.75e-04 AGAGAGAGAG CTAATCAG ATCATAGAAT chrII:9291786-9291866 38 6.16e-04 ATGCGCGACT CTTATCGG CAACTGATGA chrV:8648398-8648478 36 6.16e-04 ACGGATGCTT CTTATCGG GAGTAGTTTG chrX:12780834-12780914 38 6.16e-04 ACACTGTTAT CTTATCGG AAAGCACGAA chrII:6413974-6414054 12 7.15e-04 AATGTCAGTT GTTATCAA AGAACTCAAC chrV:10256178-10256258 58 7.15e-04 GATCACAATA TTGATCAA AGGAGCATGT chrIV:11289113-11289193 29 7.15e-04 CCATCAAAAT GTTATCAA TTTATCACTT chrII:7695774-7695854 55 7.42e-04 AGTGCCTGTG ATGATAAG AGAACCGTCC chrV:10870179-10870259 62 7.42e-04 ACATCGGTTG ATGATAAG ACACGAGACA chrII:9974349-9974429 48 7.42e-04 TTGTTGTCTG ATGATAAG AATCTCTTTG chrX:11008225-11008305 18 9.02e-04 AGTATGTGTG TTTATCAA TTACTCGCGC chrV:15666875-15666955 26 9.02e-04 CGTGGTTGTC TTGATAAC GTCTATCAGA chrI:6418830-6418910 33 9.02e-04 TATGTATTTT TTTATCAA TTTCCGAATA chrI:10753118-10753198 62 9.02e-04 GCCAGGCGTC TTTATCAA TTGCCTGCTG chrX:7445916-7445996 5 9.02e-04 TTGT TTTATCAA TTTTTGACAT chrX:13257704-13257784 58 9.02e-04 GTTTCTTCAA GTGATAAA AAAGATAATT chrIII:4506878-4506958 33 1.12e-03 AGAGTTCGTT TTTATAAC CAGCACGAAA chrX:9540600-9540680 72 1.12e-03 TGATTTGGCA TTGATAAA T chrI:4804832-4804912 60 1.16e-03 CGTCCGTCAC CTTATCAT CAAGTGCAGT chrV:16278067-16278147 11 1.16e-03 TTATATGGTG CTAATCAC TATTTCTGAC chrII:8384512-8384592 55 1.22e-03 TTTTGTCATC ATGATCAA ACTATCGGAG chrI:12552892-12552972 13 1.32e-03 ACAGTTGTTT CTTATCGC AGTTCTGTGA chrIII:3764158-3764238 66 1.32e-03 ATTCTGATTT CTTATCGC ATAGTGA chrX:16550739-16550819 51 1.32e-03 GGGTTCTTGC CTCATCAG TCGATGATGC chrIV:8163810-8163890 7 1.39e-03 TAATAA CTGATAAT GAGAGCATGA chrIV:11284261-11284341 63 1.39e-03 GAGGTACGTG CTGATAAT GGAACAagtg chrV:9679300-9679380 69 1.39e-03 AACCGTGTCA CTAATCAA AATT chrX:5669885-5669965 50 1.46e-03 CGAGGTCATG ATGATAAC GGGCGAATTG chrX:3290332-3290412 18 1.46e-03 CAAGTGTGCA ATTATCAA CATTTTACTG chrX:12781896-12781976 35 1.46e-03 AGGTCTGGTG ATTATCAA TTGCAAATTG chrV:9791481-9791561 27 1.46e-03 TCTGATTCGT ATGATAAC ACAATACTTC chrIII:6169058-6169138 54 1.62e-03 GCGTCACGTG CTGGTCAG CTGAGAGCTT chrII:5748536-5748616 20 1.80e-03 GCGTCCGCGT TTTATCGG TTAAAAACGA chrX:8604322-8604402 65 2.03e-03 TGATTGGCGT CTTATCTG AGAACCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:7273678-7273758 3.2e-05 19_[+1]_53 chrII:7277402-7277482 3.2e-05 14_[+1]_58 chrI:3710768-3710848 3.2e-05 47_[+1]_25 chrX:2580689-2580769 3.2e-05 3_[+1]_69 chrV:18701506-18701586 3.2e-05 27_[+1]_45 chrIII:9326704-9326784 3.2e-05 52_[+1]_20 chrX:8567330-8567410 3.2e-05 40_[+1]_32 chrIII:12317645-12317725 3.2e-05 63_[+1]_9 chrX:14816857-14816937 3.2e-05 42_[+1]_30 chrI:4099680-4099760 3.2e-05 71_[+1]_1 chrV:10802234-10802314 3.2e-05 72_[+1] chrIII:11026782-11026862 3.2e-05 3_[+1]_69 chrI:6389771-6389851 3.2e-05 [+1]_72 chrIII:946481-946561 3.2e-05 64_[+1]_8 chrII:5323966-5324046 3.2e-05 38_[+1]_34 chrIII:936272-936352 3.2e-05 57_[+1]_15 chrI:10231797-10231877 3.2e-05 16_[+1]_56 chrV:14640949-14641029 3.2e-05 21_[+1]_51 chrII:4770028-4770108 3.2e-05 48_[+1]_24 chrI:2800849-2800929 3.2e-05 66_[+1]_6 chrII:6520260-6520340 5.2e-05 59_[+1]_13 chrIV:3012550-3012630 5.2e-05 55_[+1]_17 chrII:13079024-13079104 5.2e-05 30_[+1]_42 chrI:8302184-8302264 5.2e-05 59_[+1]_13 chrIV:8032318-8032398 5.2e-05 9_[+1]_63 chrIII:1028405-1028485 5.2e-05 43_[+1]_29 chrIII:3253882-3253962 5.2e-05 22_[+1]_50 chrI:7354320-7354400 5.2e-05 59_[+1]_13 chrII:7639216-7639296 5.2e-05 27_[+1]_45 chrX:15424215-15424295 5.2e-05 49_[+1]_23 chrIII:3370189-3370269 5.2e-05 61_[+1]_11 chrV:9491750-9491830 5.2e-05 4_[+1]_68 chrV:11975377-11975457 5.2e-05 25_[+1]_47 chrX:4698432-4698512 5.2e-05 69_[+1]_3 chrV:2731213-2731293 5.2e-05 25_[+1]_47 chrI:14051943-14052023 0.00014 61_[+1]_11 chrV:8768627-8768707 0.00014 13_[+1]_59 chrV:18826598-18826678 0.00014 [+1]_72 chrI:3113706-3113786 0.00014 46_[+1]_26 chrV:10801275-10801355 0.00014 49_[+1]_23 chrI:13104177-13104257 0.00014 57_[+1]_15 chrX:3842660-3842740 0.00014 53_[+1]_19 chrIV:10970479-10970559 0.00014 70_[+1]_2 chrI:4073727-4073807 0.00023 28_[+1]_44 chrV:19205541-19205621 0.00023 2_[+1]_70 chrV:10776834-10776914 0.00023 54_[+1]_18 chrX:11047335-11047415 0.00023 68_[+1]_4 chrI:5388659-5388739 0.00023 22_[+1]_50 chrX:440636-440716 0.00023 68_[+1]_4 chrII:162350-162430 0.00023 53_[+1]_19 chrIII:154340-154420 0.00023 34_[+1]_38 chrI:6294068-6294148 0.00023 [+1]_72 chrIV:4486894-4486974 0.00023 31_[+1]_41 chrII:915387-915467 0.00023 3_[+1]_69 chrIII:9722208-9722288 0.00023 32_[+1]_40 chrV:12512940-12513020 0.00023 43_[+1]_29 chrV:14503252-14503332 0.00023 50_[+1]_22 chrX:2439854-2439934 0.00023 43_[+1]_29 chrII:8625273-8625353 0.00023 11_[+1]_61 chrII:5585935-5586015 0.00023 18_[+1]_54 chrIV:10761547-10761627 0.00023 69_[+1]_3 chrIV:3158335-3158415 0.00023 13_[+1]_59 chrV:20752792-20752872 0.00023 21_[+1]_51 chrIV:7393885-7393965 0.00023 67_[+1]_5 chrV:11941832-11941912 0.00023 43_[+1]_29 chrII:8001601-8001681 0.00023 7_[+1]_65 chrX:14071091-14071171 0.00023 51_[+1]_21 chrX:670735-670815 0.00023 46_[+1]_26 chrII:6615405-6615485 0.00033 25_[+1]_47 chrIV:3613358-3613438 0.00033 [+1]_72 chrV:12475516-12475596 0.00033 29_[+1]_43 chrX:6530749-6530829 0.00033 21_[+1]_51 chrX:13803383-13803463 0.00033 71_[+1]_1 chrIII:13059493-13059573 0.00033 48_[+1]_24 chrII:12879939-12880019 0.00033 46_[+1]_26 chrX:3153330-3153410 0.00033 60_[+1]_12 chrIV:12197828-12197908 0.00033 43_[+1]_29 chrIV:9118544-9118624 0.00033 70_[+1]_2 chrX:13334014-13334094 0.00033 26_[+1]_46 chrIV:13057594-13057674 0.00033 55_[+1]_17 chrII:13166002-13166082 0.00033 6_[+1]_66 chrI:5408448-5408528 0.00042 43_[+1]_29 chrI:10833507-10833587 0.00042 7_[+1]_65 chrI:5309759-5309839 0.00042 22_[+1]_50 chrX:8932534-8932614 0.00042 32_[+1]_40 chrII:1949291-1949371 0.00042 [+1]_72 chrX:2695423-2695503 0.00042 71_[+1]_1 chrIII:5981587-5981667 0.00042 64_[+1]_8 chrV:8425280-8425360 0.00043 34_[+1]_38 chrV:13212727-13212807 0.00045 65_[+1]_7 chrIII:9289998-9290078 0.0005 14_[+1]_58 chrX:6536838-6536918 0.00058 10_[+1]_62 chrII:8387072-8387152 0.00058 10_[+1]_62 chrV:10693906-10693986 0.00058 44_[+1]_28 chrII:11153269-11153349 0.00058 55_[+1]_17 chrV:8403320-8403400 0.00058 31_[+1]_41 chrIII:11197447-11197527 0.00058 42_[+1]_30 chrII:9291786-9291866 0.00062 37_[+1]_35 chrV:8648398-8648478 0.00062 35_[+1]_37 chrX:12780834-12780914 0.00062 37_[+1]_35 chrII:6413974-6414054 0.00071 11_[+1]_61 chrV:10256178-10256258 0.00071 57_[+1]_15 chrIV:11289113-11289193 0.00071 28_[+1]_44 chrII:7695774-7695854 0.00074 54_[+1]_18 chrV:10870179-10870259 0.00074 61_[+1]_11 chrII:9974349-9974429 0.00074 47_[+1]_25 chrX:11008225-11008305 0.0009 17_[+1]_55 chrV:15666875-15666955 0.0009 25_[+1]_47 chrI:6418830-6418910 0.0009 32_[+1]_40 chrI:10753118-10753198 0.0009 61_[+1]_11 chrX:7445916-7445996 0.0009 4_[+1]_68 chrX:13257704-13257784 0.0009 57_[+1]_15 chrIII:4506878-4506958 0.0011 32_[+1]_40 chrX:9540600-9540680 0.0011 71_[+1]_1 chrI:4804832-4804912 0.0012 59_[+1]_13 chrV:16278067-16278147 0.0012 10_[+1]_62 chrII:8384512-8384592 0.0012 54_[+1]_18 chrI:12552892-12552972 0.0013 12_[+1]_60 chrIII:3764158-3764238 0.0013 65_[+1]_7 chrX:16550739-16550819 0.0013 50_[+1]_22 chrIV:8163810-8163890 0.0014 6_[+1]_66 chrIV:11284261-11284341 0.0014 62_[+1]_10 chrV:9679300-9679380 0.0014 68_[+1]_4 chrX:5669885-5669965 0.0015 49_[+1]_23 chrX:3290332-3290412 0.0015 17_[+1]_55 chrX:12781896-12781976 0.0015 34_[+1]_38 chrV:9791481-9791561 0.0015 26_[+1]_46 chrIII:6169058-6169138 0.0016 53_[+1]_19 chrII:5748536-5748616 0.0018 19_[+1]_53 chrX:8604322-8604402 0.002 64_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTKATMAG width=8 seqs=130 chrII:7273678-7273758 ( 20) CTTATCAG 1 chrII:7277402-7277482 ( 15) CTTATCAG 1 chrI:3710768-3710848 ( 48) CTTATCAG 1 chrX:2580689-2580769 ( 4) CTTATCAG 1 chrV:18701506-18701586 ( 28) CTTATCAG 1 chrIII:9326704-9326784 ( 53) CTTATCAG 1 chrX:8567330-8567410 ( 41) CTTATCAG 1 chrIII:12317645-12317725 ( 64) CTTATCAG 1 chrX:14816857-14816937 ( 43) CTTATCAG 1 chrI:4099680-4099760 ( 72) CTTATCAG 1 chrV:10802234-10802314 ( 73) CTTATCAG 1 chrIII:11026782-11026862 ( 4) CTTATCAG 1 chrI:6389771-6389851 ( 1) CTTATCAG 1 chrIII:946481-946561 ( 65) CTTATCAG 1 chrII:5323966-5324046 ( 39) CTTATCAG 1 chrIII:936272-936352 ( 58) CTTATCAG 1 chrI:10231797-10231877 ( 17) CTTATCAG 1 chrV:14640949-14641029 ( 22) CTTATCAG 1 chrII:4770028-4770108 ( 49) CTTATCAG 1 chrI:2800849-2800929 ( 67) CTTATCAG 1 chrII:6520260-6520340 ( 60) CTGATAAG 1 chrIV:3012550-3012630 ( 56) CTGATAAG 1 chrII:13079024-13079104 ( 31) CTGATAAG 1 chrI:8302184-8302264 ( 60) CTGATAAG 1 chrIV:8032318-8032398 ( 10) CTGATAAG 1 chrIII:1028405-1028485 ( 44) CTGATAAG 1 chrIII:3253882-3253962 ( 23) CTGATAAG 1 chrI:7354320-7354400 ( 60) CTGATAAG 1 chrII:7639216-7639296 ( 28) CTGATAAG 1 chrX:15424215-15424295 ( 50) CTGATAAG 1 chrIII:3370189-3370269 ( 62) CTGATAAG 1 chrV:9491750-9491830 ( 5) CTGATAAG 1 chrV:11975377-11975457 ( 26) CTGATAAG 1 chrX:4698432-4698512 ( 70) CTGATAAG 1 chrV:2731213-2731293 ( 26) CTGATAAG 1 chrI:14051943-14052023 ( 62) CTTATCAC 1 chrV:8768627-8768707 ( 14) CTTATCAC 1 chrV:18826598-18826678 ( 1) CTTATCAC 1 chrI:3113706-3113786 ( 47) GTGATCAG 1 chrV:10801275-10801355 ( 50) CTTATCAC 1 chrI:13104177-13104257 ( 58) CTTATCAC 1 chrX:3842660-3842740 ( 54) CTTATCAC 1 chrIV:10970479-10970559 ( 71) CTTATCAC 1 chrI:4073727-4073807 ( 29) CTTATCAA 1 chrV:19205541-19205621 ( 3) CTTATCAA 1 chrV:10776834-10776914 ( 55) GTTATCAG 1 chrX:11047335-11047415 ( 69) CTTATCAA 1 chrI:5388659-5388739 ( 23) CTGATAAC 1 chrX:440636-440716 ( 69) CTGATAAC 1 chrII:162350-162430 ( 54) CTGATAAC 1 chrIII:154340-154420 ( 35) CTGATAAC 1 chrI:6294068-6294148 ( 1) CTTATCAA 1 chrIV:4486894-4486974 ( 32) GTTATCAG 1 chrII:915387-915467 ( 4) CTGATAAC 1 chrIII:9722208-9722288 ( 33) GTTATCAG 1 chrV:12512940-12513020 ( 44) CTTATCAA 1 chrV:14503252-14503332 ( 51) CTTATCAA 1 chrX:2439854-2439934 ( 44) GTTATCAG 1 chrII:8625273-8625353 ( 12) CTTATCAA 1 chrII:5585935-5586015 ( 19) CTGATAAC 1 chrIV:10761547-10761627 ( 70) CTGATAAC 1 chrIV:3158335-3158415 ( 14) CTGATAAC 1 chrV:20752792-20752872 ( 22) CTTATCAA 1 chrIV:7393885-7393965 ( 68) GTTATCAG 1 chrV:11941832-11941912 ( 44) CTTATCAA 1 chrII:8001601-8001681 ( 8) CTTATCAA 1 chrX:14071091-14071171 ( 52) CTGATAAC 1 chrX:670735-670815 ( 47) CTTATCAA 1 chrII:6615405-6615485 ( 26) CTGATAAA 1 chrIV:3613358-3613438 ( 1) TTTATCAG 1 chrV:12475516-12475596 ( 30) GTGATAAG 1 chrX:6530749-6530829 ( 22) CTGATAAA 1 chrX:13803383-13803463 ( 72) GTGATAAG 1 chrIII:13059493-13059573 ( 49) GTGATAAG 1 chrII:12879939-12880019 ( 47) TTTATCAG 1 chrX:3153330-3153410 ( 61) GTGATAAG 1 chrIV:12197828-12197908 ( 44) GTGATAAG 1 chrIV:9118544-9118624 ( 71) GTGATAAG 1 chrX:13334014-13334094 ( 27) GTGATAAG 1 chrIV:13057594-13057674 ( 56) GTGATAAG 1 chrII:13166002-13166082 ( 7) GTGATAAG 1 chrI:5408448-5408528 ( 44) TTGATAAG 1 chrI:10833507-10833587 ( 8) TTGATAAG 1 chrI:5309759-5309839 ( 23) TTGATAAG 1 chrX:8932534-8932614 ( 33) TTGATAAG 1 chrII:1949291-1949371 ( 1) TTGATAAG 1 chrX:2695423-2695503 ( 72) TTGATAAG 1 chrIII:5981587-5981667 ( 65) TTGATAAG 1 chrV:8425280-8425360 ( 35) GTGATCAC 1 chrV:13212727-13212807 ( 66) ATGATCAG 1 chrIII:9289998-9290078 ( 15) TTTATAAG 1 chrX:6536838-6536918 ( 11) TTGATCAC 1 chrII:8387072-8387152 ( 11) CTAATCAG 1 chrV:10693906-10693986 ( 45) CTAATCAG 1 chrII:11153269-11153349 ( 56) GTTATCAC 1 chrV:8403320-8403400 ( 32) GTGATCAA 1 chrIII:11197447-11197527 ( 43) CTAATCAG 1 chrII:9291786-9291866 ( 38) CTTATCGG 1 chrV:8648398-8648478 ( 36) CTTATCGG 1 chrX:12780834-12780914 ( 38) CTTATCGG 1 chrII:6413974-6414054 ( 12) GTTATCAA 1 chrV:10256178-10256258 ( 58) TTGATCAA 1 chrIV:11289113-11289193 ( 29) GTTATCAA 1 chrII:7695774-7695854 ( 55) ATGATAAG 1 chrV:10870179-10870259 ( 62) ATGATAAG 1 chrII:9974349-9974429 ( 48) ATGATAAG 1 chrX:11008225-11008305 ( 18) TTTATCAA 1 chrV:15666875-15666955 ( 26) TTGATAAC 1 chrI:6418830-6418910 ( 33) TTTATCAA 1 chrI:10753118-10753198 ( 62) TTTATCAA 1 chrX:7445916-7445996 ( 5) TTTATCAA 1 chrX:13257704-13257784 ( 58) GTGATAAA 1 chrIII:4506878-4506958 ( 33) TTTATAAC 1 chrX:9540600-9540680 ( 72) TTGATAAA 1 chrI:4804832-4804912 ( 60) CTTATCAT 1 chrV:16278067-16278147 ( 11) CTAATCAC 1 chrII:8384512-8384592 ( 55) ATGATCAA 1 chrI:12552892-12552972 ( 13) CTTATCGC 1 chrIII:3764158-3764238 ( 66) CTTATCGC 1 chrX:16550739-16550819 ( 51) CTCATCAG 1 chrIV:8163810-8163890 ( 7) CTGATAAT 1 chrIV:11284261-11284341 ( 63) CTGATAAT 1 chrV:9679300-9679380 ( 69) CTAATCAA 1 chrX:5669885-5669965 ( 50) ATGATAAC 1 chrX:3290332-3290412 ( 18) ATTATCAA 1 chrX:12781896-12781976 ( 35) ATTATCAA 1 chrV:9791481-9791561 ( 27) ATGATAAC 1 chrIII:6169058-6169138 ( 54) CTGGTCAG 1 chrII:5748536-5748616 ( 20) TTTATCGG 1 chrX:8604322-8604402 ( 65) CTTATCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.14092 E= 1.9e-044 -207 159 -39 -92 -1367 -1367 -1367 178 -292 -473 112 75 177 -1367 -478 -1367 -1367 -1367 -1367 178 51 152 -1367 -1367 170 -1367 -220 -524 -49 -3 142 -366 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 130 E= 1.9e-044 0.069231 0.615385 0.161538 0.153846 0.000000 0.000000 0.000000 1.000000 0.038462 0.007692 0.461538 0.492308 0.992308 0.000000 0.007692 0.000000 0.000000 0.000000 0.000000 1.000000 0.415385 0.584615 0.000000 0.000000 0.946154 0.000000 0.046154 0.007692 0.207692 0.200000 0.569231 0.023077 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 regular expression -------------------------------------------------------------------------------- CT[TG]AT[CA]A[GAC] -------------------------------------------------------------------------------- Time 5.09 secs. ******************************************************************************** ******************************************************************************** MOTIF TKTYTCTC MEME-2 width = 8 sites = 34 llr = 279 E-value = 2.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKTYTCTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 2235:a:a probability G :3:::::: matrix T 8575a:a: bits 2.3 * * 2.1 * * 1.8 **** 1.6 **** Relative 1.4 **** Entropy 1.1 * ****** (11.9 bits) 0.9 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTCTC consensus CGCT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTYTCTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:8248927-8249007 29 1.80e-05 ACAAAATCGT TTTCTCTC TTTCATTTTT chrV:348134-348214 13 1.80e-05 TGTGTCTCAC TTTCTCTC TCTCGATAAT chrX:6653337-6653417 63 1.80e-05 TTTTCTTCTC TTTCTCTC ATTTTTACAC chrIII:12849836-12849916 39 1.80e-05 AAATGTGTGA TTTCTCTC TTATCTCACT chrV:20752792-20752872 41 1.80e-05 CAGTGCTCTT TTTCTCTC GTGTTACTGC chrIII:936272-936352 39 1.80e-05 tctctctctt tttctctc tAATACTTTT chrIII:946481-946561 29 3.11e-05 TCTTTCTTTG TGTCTCTC AATTTTCACT chrIII:10566083-10566163 69 3.11e-05 CGCAGACGTA TGTCTCTC GTTT chrII:162350-162430 69 6.95e-05 AACACAACAT TTTTTCTC CCCC chrIII:4240313-4240393 53 6.95e-05 TTGATAGTAG TTTTTCTC TTTTTTTTCG chrII:915387-915467 26 6.95e-05 TCGTTATCTA TTTTTCTC CAGTTTTGTG chrI:5810131-5810211 34 6.95e-05 TATGATTCTC TTTTTCTC CCCCTTTCAA chrIII:3370189-3370269 33 6.95e-05 GGGGAGAAAC TTTTTCTC ATTAAAGATA chrII:6026786-6026866 42 1.10e-04 TCATTTTCTC TGTTTCTC TATGTCTCTA chrV:16357426-16357506 38 1.10e-04 ATAAAAACCc tctctctc tcactctctc chrV:10693906-10693986 58 1.10e-04 ATCAGTTTTC TGTTTCTC TAATCTTCTT chrIV:1064478-1064558 8 1.10e-04 TGTTGTG TGTTTCTC TTTTTCCCGG chrII:6919611-6919691 46 1.28e-04 ACTGCGTCTC TTCTTCTC AATCAGTTTT chrX:3829773-3829853 56 1.80e-04 CACACAAATG TCTTTCTC CGCTTTTTTT chrIII:11881722-11881802 4 1.80e-04 CTC TCCCTCTC GTACACTATT chrI:3113706-3113786 18 1.80e-04 CTGGTAGTTT TCCCTCTC GAAATGCAAA chrIV:11289113-11289193 7 1.80e-04 CTCCTT TCCCTCTC GCTCCCATCA chrX:4102321-4102401 43 1.80e-04 AGCTTAATCA TGCTTCTC AATCTTAAAG chrIII:7479088-7479168 11 1.80e-04 TTCCTCCGTC TCCCTCTC CCTCTTTTAT chrV:14640949-14641029 41 1.80e-04 ATTTTGTTCT TGCTTCTC GTTTCACATG chrX:11680954-11681034 21 1.90e-04 TGCTCTCTAC CGTCTCTC GTCCTCTTTC chrIII:1220136-1220216 21 1.90e-04 AGTATGTCTG CGTCTCTC CGACGTCCCG chrV:15192575-15192655 38 1.90e-04 AAATTCGCTG CGTCTCTC CTCAAACTCG chrI:14051943-14052023 51 2.29e-04 AAGTTCTTTT CTTTTCTC ATCCTTATCA chrII:3911424-3911504 72 2.29e-04 CCTTGTGTAT CTCCTCTC G chrIV:12197828-12197908 17 2.29e-04 CACTTGTCGG CTTTTCTC GGTATGACAG chrV:12467930-12468010 4 2.29e-04 TGC TCCTTCTC TGCTTCAGTT chrII:8384512-8384592 8 2.57e-04 AGACTTT CGCCTCTC CTGTAATTCT chrIV:10761547-10761627 53 2.70e-04 ACATTTTATG CTCTTCTC CCTCCCAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTYTCTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:8248927-8249007 1.8e-05 28_[+2]_44 chrV:348134-348214 1.8e-05 12_[+2]_60 chrX:6653337-6653417 1.8e-05 62_[+2]_10 chrIII:12849836-12849916 1.8e-05 38_[+2]_34 chrV:20752792-20752872 1.8e-05 40_[+2]_32 chrIII:936272-936352 1.8e-05 38_[+2]_34 chrIII:946481-946561 3.1e-05 28_[+2]_44 chrIII:10566083-10566163 3.1e-05 68_[+2]_4 chrII:162350-162430 6.9e-05 68_[+2]_4 chrIII:4240313-4240393 6.9e-05 52_[+2]_20 chrII:915387-915467 6.9e-05 25_[+2]_47 chrI:5810131-5810211 6.9e-05 33_[+2]_39 chrIII:3370189-3370269 6.9e-05 32_[+2]_40 chrII:6026786-6026866 0.00011 41_[+2]_31 chrV:16357426-16357506 0.00011 37_[+2]_35 chrV:10693906-10693986 0.00011 57_[+2]_15 chrIV:1064478-1064558 0.00011 7_[+2]_65 chrII:6919611-6919691 0.00013 45_[+2]_27 chrX:3829773-3829853 0.00018 55_[+2]_17 chrIII:11881722-11881802 0.00018 3_[+2]_69 chrI:3113706-3113786 0.00018 17_[+2]_55 chrIV:11289113-11289193 0.00018 6_[+2]_66 chrX:4102321-4102401 0.00018 42_[+2]_30 chrIII:7479088-7479168 0.00018 10_[+2]_62 chrV:14640949-14641029 0.00018 40_[+2]_32 chrX:11680954-11681034 0.00019 20_[+2]_52 chrIII:1220136-1220216 0.00019 20_[+2]_52 chrV:15192575-15192655 0.00019 37_[+2]_35 chrI:14051943-14052023 0.00023 50_[+2]_22 chrII:3911424-3911504 0.00023 71_[+2]_1 chrIV:12197828-12197908 0.00023 16_[+2]_56 chrV:12467930-12468010 0.00023 3_[+2]_69 chrII:8384512-8384592 0.00026 7_[+2]_65 chrIV:10761547-10761627 0.00027 52_[+2]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTYTCTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKTYTCTC width=8 seqs=34 chrII:8248927-8249007 ( 29) TTTCTCTC 1 chrV:348134-348214 ( 13) TTTCTCTC 1 chrX:6653337-6653417 ( 63) TTTCTCTC 1 chrIII:12849836-12849916 ( 39) TTTCTCTC 1 chrV:20752792-20752872 ( 41) TTTCTCTC 1 chrIII:936272-936352 ( 39) TTTCTCTC 1 chrIII:946481-946561 ( 29) TGTCTCTC 1 chrIII:10566083-10566163 ( 69) TGTCTCTC 1 chrII:162350-162430 ( 69) TTTTTCTC 1 chrIII:4240313-4240393 ( 53) TTTTTCTC 1 chrII:915387-915467 ( 26) TTTTTCTC 1 chrI:5810131-5810211 ( 34) TTTTTCTC 1 chrIII:3370189-3370269 ( 33) TTTTTCTC 1 chrII:6026786-6026866 ( 42) TGTTTCTC 1 chrV:16357426-16357506 ( 38) TCTCTCTC 1 chrV:10693906-10693986 ( 58) TGTTTCTC 1 chrIV:1064478-1064558 ( 8) TGTTTCTC 1 chrII:6919611-6919691 ( 46) TTCTTCTC 1 chrX:3829773-3829853 ( 56) TCTTTCTC 1 chrIII:11881722-11881802 ( 4) TCCCTCTC 1 chrI:3113706-3113786 ( 18) TCCCTCTC 1 chrIV:11289113-11289193 ( 7) TCCCTCTC 1 chrX:4102321-4102401 ( 43) TGCTTCTC 1 chrIII:7479088-7479168 ( 11) TCCCTCTC 1 chrV:14640949-14641029 ( 41) TGCTTCTC 1 chrX:11680954-11681034 ( 21) CGTCTCTC 1 chrIII:1220136-1220216 ( 21) CGTCTCTC 1 chrV:15192575-15192655 ( 38) CGTCTCTC 1 chrI:14051943-14052023 ( 51) CTTTTCTC 1 chrII:3911424-3911504 ( 72) CTCCTCTC 1 chrIV:12197828-12197908 ( 17) CTTTTCTC 1 chrV:12467930-12468010 ( 4) TCCTTCTC 1 chrII:8384512-8384592 ( 8) CGCCTCTC 1 chrIV:10761547-10761627 ( 53) CTCTTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTYTCTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0846 E= 2.0e+001 -1173 20 -1173 139 -1173 1 61 69 -1173 66 -1173 121 -1173 137 -1173 69 -1173 -1173 -1173 178 -1173 229 -1173 -1173 -1173 -1173 -1173 178 -1173 229 -1173 -1173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTYTCTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 2.0e+001 0.000000 0.235294 0.000000 0.764706 0.000000 0.205882 0.323529 0.470588 0.000000 0.323529 0.000000 0.676471 0.000000 0.529412 0.000000 0.470588 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTYTCTC MEME-2 regular expression -------------------------------------------------------------------------------- [TC][TGC][TC][CT]TCTC -------------------------------------------------------------------------------- Time 8.62 secs. ******************************************************************************** ******************************************************************************** MOTIF AGARAAAG MEME-3 width = 8 sites = 37 llr = 299 E-value = 1.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGARAAAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8:96aa6: pos.-specific C ::::::1: probability G 2a14::2a matrix T ::::::1: bits 2.3 * 2.1 * * 1.8 * ** * 1.6 * ** * Relative 1.4 ** ** * Entropy 1.1 *** ** * (11.7 bits) 0.9 ****** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAAAAAG consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARAAAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:1607937-1608017 59 2.79e-05 AGAATCGCGA AGAAAAAG GCCGAGGGCG chrV:10776834-10776914 29 2.79e-05 GAGGACGCCA AGAAAAAG AGAAGGTTAG chrX:5252911-5252991 67 2.79e-05 CGCGTTAAGG AGAAAAAG AGGTGG chrX:14214661-14214741 44 2.79e-05 GTAAACTGGA AGAAAAAG AGCGCAGAGC chrV:3388477-3388557 22 2.79e-05 AGAGCCGCAG AGAAAAAG AGAGAACAGC chrX:13334014-13334094 6 2.79e-05 ACATG AGAAAAAG TCCAGTCAGA chrI:3672753-3672833 69 4.81e-05 AAAACGAATG AGAGAAAG AGTT chrX:17504642-17504722 52 4.81e-05 AGCAGGGAGC AGAGAAAG ATGGCGAAAA chrX:440636-440716 27 4.81e-05 AAAGAGCACA AGAGAAAG AGAGTGAGCA chrII:9620344-9620424 63 4.81e-05 gaagagagtg agagaaag ggaaagaaaa chrIII:11197447-11197527 66 4.81e-05 AGAATTTCAG AGAGAAAG TAGAAGC chrI:6081568-6081648 8 4.81e-05 GAGCCGA AGAGAAAG AATAATTCGT chrX:670735-670815 12 4.81e-05 CTGTCAAAAA AGAGAAAG TGAGGGGAGG chrII:6615405-6615485 59 6.83e-05 GACCATTTTG GGAAAAAG CGCGTTGTGC chrX:17139520-17139600 7 6.83e-05 CAAATT GGAAAAAG GCGGATCGAT chrX:6456732-6456812 73 6.83e-05 AAGAGGTGGT GGAAAAAG chrV:9255655-9255735 17 6.83e-05 TCTTGAGAGT GGAAAAAG AGTACTATGA chrV:11975377-11975457 35 8.85e-05 ACTGATAAGA AGAAAAGG AAGGGCAGCA chrI:12343541-12343621 27 8.85e-05 ACGTCTATTG AGAAAAGG ACACTGGCTG chrII:13073286-13073366 29 8.85e-05 TCAAATGTGA AGAAAAGG GGTTGGAAGC chrI:10231797-10231877 35 1.03e-04 AACGAATAGA GGAGAAAG GTGTGCTCTA chrII:7404226-7404306 39 1.18e-04 GGTTGATGAC AGAGAAGG GCATCATCGT chrII:6520260-6520340 17 1.66e-04 ATCAGCAAAA AGGAAAAG CGCGTTTCCA chrIV:3012550-3012630 26 1.66e-04 AAAAAAAAAA AGAAAATG TTCAGGCTGA chrX:3290332-3290412 66 1.66e-04 CAGCTGTGTT AGGAAAAG CGGACAC chrX:1272690-1272770 3 1.66e-04 TC AGGAAAAG GTAATAAATT chrX:5944065-5944145 49 1.66e-04 GGCGTTTTAA AGAAAATG AAGACGAACA chrV:13606995-13607075 45 1.66e-04 gaggaggagg aggaAAAG GCGATGAAAG chrIV:10463297-10463377 66 1.66e-04 GATAAATCAA AGAAAATG AGATCAT chrIII:5981587-5981667 17 1.66e-04 CGATTTTTTG AGGAAAAG TGTCCTAAAA chrI:6389771-6389851 65 2.01e-04 GGTTGATGTG AGAGAATG GGCGGCAA chrV:5027809-5027889 46 2.16e-04 CATGTACTAC GGAAAAGG GGAAATATTT chrV:15666875-15666955 1 2.35e-04 . AGAAAACG AGCAGCACGT chrI:5408448-5408528 68 2.46e-04 GGAGAAATAG GGAGAAGG GAGGG chrI:5309759-5309839 69 2.60e-04 TTTCGAGGTC AGAGAACG AGAG chrII:5323966-5324046 70 2.95e-04 GCCGAGCTCT GGAAAATG TCA chrV:18782880-18782960 54 5.28e-04 GAAGAGACGC AGAGAAAA GTGTTCCCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARAAAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:1607937-1608017 2.8e-05 58_[+3]_14 chrV:10776834-10776914 2.8e-05 28_[+3]_44 chrX:5252911-5252991 2.8e-05 66_[+3]_6 chrX:14214661-14214741 2.8e-05 43_[+3]_29 chrV:3388477-3388557 2.8e-05 21_[+3]_51 chrX:13334014-13334094 2.8e-05 5_[+3]_67 chrI:3672753-3672833 4.8e-05 68_[+3]_4 chrX:17504642-17504722 4.8e-05 51_[+3]_21 chrX:440636-440716 4.8e-05 26_[+3]_46 chrII:9620344-9620424 4.8e-05 62_[+3]_10 chrIII:11197447-11197527 4.8e-05 65_[+3]_7 chrI:6081568-6081648 4.8e-05 7_[+3]_65 chrX:670735-670815 4.8e-05 11_[+3]_61 chrII:6615405-6615485 6.8e-05 58_[+3]_14 chrX:17139520-17139600 6.8e-05 6_[+3]_66 chrX:6456732-6456812 6.8e-05 72_[+3] chrV:9255655-9255735 6.8e-05 16_[+3]_56 chrV:11975377-11975457 8.9e-05 34_[+3]_38 chrI:12343541-12343621 8.9e-05 26_[+3]_46 chrII:13073286-13073366 8.9e-05 28_[+3]_44 chrI:10231797-10231877 0.0001 34_[+3]_38 chrII:7404226-7404306 0.00012 38_[+3]_34 chrII:6520260-6520340 0.00017 16_[+3]_56 chrIV:3012550-3012630 0.00017 25_[+3]_47 chrX:3290332-3290412 0.00017 65_[+3]_7 chrX:1272690-1272770 0.00017 2_[+3]_70 chrX:5944065-5944145 0.00017 48_[+3]_24 chrV:13606995-13607075 0.00017 44_[+3]_28 chrIV:10463297-10463377 0.00017 65_[+3]_7 chrIII:5981587-5981667 0.00017 16_[+3]_56 chrI:6389771-6389851 0.0002 64_[+3]_8 chrV:5027809-5027889 0.00022 45_[+3]_27 chrV:15666875-15666955 0.00024 [+3]_72 chrI:5408448-5408528 0.00025 67_[+3]_5 chrI:5309759-5309839 0.00026 68_[+3]_4 chrII:5323966-5324046 0.00029 69_[+3]_3 chrV:18782880-18782960 0.00053 53_[+3]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARAAAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGARAAAG width=8 seqs=37 chrV:1607937-1608017 ( 59) AGAAAAAG 1 chrV:10776834-10776914 ( 29) AGAAAAAG 1 chrX:5252911-5252991 ( 67) AGAAAAAG 1 chrX:14214661-14214741 ( 44) AGAAAAAG 1 chrV:3388477-3388557 ( 22) AGAAAAAG 1 chrX:13334014-13334094 ( 6) AGAAAAAG 1 chrI:3672753-3672833 ( 69) AGAGAAAG 1 chrX:17504642-17504722 ( 52) AGAGAAAG 1 chrX:440636-440716 ( 27) AGAGAAAG 1 chrII:9620344-9620424 ( 63) AGAGAAAG 1 chrIII:11197447-11197527 ( 66) AGAGAAAG 1 chrI:6081568-6081648 ( 8) AGAGAAAG 1 chrX:670735-670815 ( 12) AGAGAAAG 1 chrII:6615405-6615485 ( 59) GGAAAAAG 1 chrX:17139520-17139600 ( 7) GGAAAAAG 1 chrX:6456732-6456812 ( 73) GGAAAAAG 1 chrV:9255655-9255735 ( 17) GGAAAAAG 1 chrV:11975377-11975457 ( 35) AGAAAAGG 1 chrI:12343541-12343621 ( 27) AGAAAAGG 1 chrII:13073286-13073366 ( 29) AGAAAAGG 1 chrI:10231797-10231877 ( 35) GGAGAAAG 1 chrII:7404226-7404306 ( 39) AGAGAAGG 1 chrII:6520260-6520340 ( 17) AGGAAAAG 1 chrIV:3012550-3012630 ( 26) AGAAAATG 1 chrX:3290332-3290412 ( 66) AGGAAAAG 1 chrX:1272690-1272770 ( 3) AGGAAAAG 1 chrX:5944065-5944145 ( 49) AGAAAATG 1 chrV:13606995-13607075 ( 45) AGGAAAAG 1 chrIV:10463297-10463377 ( 66) AGAAAATG 1 chrIII:5981587-5981667 ( 17) AGGAAAAG 1 chrI:6389771-6389851 ( 65) AGAGAATG 1 chrV:5027809-5027889 ( 46) GGAAAAGG 1 chrV:15666875-15666955 ( 1) AGAAAACG 1 chrI:5408448-5408528 ( 68) GGAGAAGG 1 chrI:5309759-5309839 ( 69) AGAGAACG 1 chrII:5323966-5324046 ( 70) GGAAAATG 1 chrV:18782880-18782960 ( 54) AGAGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARAAAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.81773 E= 1.7e+001 143 -1185 3 -1185 -1185 -1185 224 -1185 157 -1185 -65 -1185 115 -1185 73 -1185 178 -1185 -1185 -1185 178 -1185 -1185 -1185 115 -192 -39 -111 -343 -1185 220 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARAAAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 1.7e+001 0.783784 0.000000 0.216216 0.000000 0.000000 0.000000 1.000000 0.000000 0.864865 0.000000 0.135135 0.000000 0.648649 0.000000 0.351351 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.648649 0.054054 0.162162 0.135135 0.027027 0.000000 0.972973 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARAAAG MEME-3 regular expression -------------------------------------------------------------------------------- [AG]GA[AG]AAAG -------------------------------------------------------------------------------- Time 12.16 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGSGSS MEME-4 width = 8 sites = 14 llr = 133 E-value = 2.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGSGSS MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :91:6246 probability G a19a4864 matrix T :::::::: bits 2.3 * * 2.1 * * 1.8 **** 1.6 **** * Relative 1.4 ******** Entropy 1.1 ******** (13.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGGCGGC consensus GCCG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGSGSS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:7744214-7744294 12 3.64e-06 GGGTCTTGAG GCGGCGGC AGGCACCGGC chrII:13668986-13669066 31 3.64e-06 TGTGTCGGCG GCGGCGGC AGCAGTGTGG chrIV:1064478-1064558 26 3.64e-06 TTTTTCCCGG GCGGCGGC CGACGCGGTA chrIV:1065729-1065809 23 3.64e-06 GCCTGCCGGC GCGGCGGC AAGCGGCCTG chrII:12879939-12880019 25 7.13e-06 AATAAAAATG GCGGCGCC GCGGTCGCCG chrIV:9118544-9118624 24 7.13e-06 TTGTCGGTCT GCGGCGCC GATGTGGAGA chrV:11941832-11941912 63 2.20e-05 TTTGAATTTC GCGGGGCC TCTACTATCG chrV:5027809-5027889 26 3.65e-05 TATTCTGACG GCGGGGCG CACATGTACT chrII:9974349-9974429 66 3.65e-05 AATCTCTTTG GCGGGGCG TCGAAAG chrX:17504642-17504722 26 4.38e-05 GTATTTGACG GCGGCCGG CAGCAGCCAG chrIV:4486894-4486974 66 4.38e-05 TCGTACAAAA GCGGGCGC GGTCTGA chrIV:3613358-3613438 72 5.46e-05 GACGTTTCAG GCGGGCGG C chrI:7287902-7287982 31 5.81e-05 GACCCCGGGC GCCGCGGC AGAGCACCAA chrX:11680954-11681034 71 1.02e-04 TCTTGTTTCA GGGGCGCG TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGSGSS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:7744214-7744294 3.6e-06 11_[+4]_61 chrII:13668986-13669066 3.6e-06 30_[+4]_42 chrIV:1064478-1064558 3.6e-06 25_[+4]_47 chrIV:1065729-1065809 3.6e-06 22_[+4]_50 chrII:12879939-12880019 7.1e-06 24_[+4]_48 chrIV:9118544-9118624 7.1e-06 23_[+4]_49 chrV:11941832-11941912 2.2e-05 62_[+4]_10 chrV:5027809-5027889 3.7e-05 25_[+4]_47 chrII:9974349-9974429 3.7e-05 65_[+4]_7 chrX:17504642-17504722 4.4e-05 25_[+4]_47 chrIV:4486894-4486974 4.4e-05 65_[+4]_7 chrIV:3613358-3613438 5.5e-05 71_[+4]_1 chrI:7287902-7287982 5.8e-05 30_[+4]_42 chrX:11680954-11681034 0.0001 70_[+4]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGSGSS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGSGSS width=8 seqs=14 chrV:7744214-7744294 ( 12) GCGGCGGC 1 chrII:13668986-13669066 ( 31) GCGGCGGC 1 chrIV:1064478-1064558 ( 26) GCGGCGGC 1 chrIV:1065729-1065809 ( 23) GCGGCGGC 1 chrII:12879939-12880019 ( 25) GCGGCGCC 1 chrIV:9118544-9118624 ( 24) GCGGCGCC 1 chrV:11941832-11941912 ( 63) GCGGGGCC 1 chrV:5027809-5027889 ( 26) GCGGGGCG 1 chrII:9974349-9974429 ( 66) GCGGGGCG 1 chrX:17504642-17504722 ( 26) GCGGCCGG 1 chrIV:4486894-4486974 ( 66) GCGGGCGC 1 chrIV:3613358-3613438 ( 72) GCGGGCGG 1 chrI:7287902-7287982 ( 31) GCCGCGGC 1 chrX:11680954-11681034 ( 71) GGGGCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGSGSS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5702 E= 2.2e+003 -1045 -1045 224 -1045 -1045 218 -157 -1045 -1045 -151 213 -1045 -1045 -1045 224 -1045 -1045 165 75 -1045 -1045 7 189 -1045 -1045 107 143 -1045 -1045 165 75 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGSGSS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 2.2e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.071429 0.928571 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.642857 0.357143 0.000000 0.000000 0.214286 0.785714 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.642857 0.357143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGSGSS MEME-4 regular expression -------------------------------------------------------------------------------- GCGG[CG][GC][GC][CG] -------------------------------------------------------------------------------- Time 15.59 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCTCCC MEME-5 width = 8 sites = 2 llr = 25 E-value = 2.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCTCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aa:aaa probability G :a:::::: matrix T ::::a::: bits 2.3 **** *** 2.1 **** *** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (17.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCCTCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:13668986-13669066 71 4.46e-06 CCGCTGGGCC CGCCTCCC TT chrV:10801275-10801355 31 4.46e-06 TTGATTTATT CGCCTCCC CTTTTTCGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:13668986-13669066 4.5e-06 70_[+5]_2 chrV:10801275-10801355 4.5e-06 30_[+5]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCTCCC width=8 seqs=2 chrII:13668986-13669066 ( 71) CGCCTCCC 1 chrV:10801275-10801355 ( 31) CGCCTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 2.2e+004 -765 228 -765 -765 -765 -765 223 -765 -765 228 -765 -765 -765 228 -765 -765 -765 -765 -765 177 -765 228 -765 -765 -765 228 -765 -765 -765 228 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.2e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCCC MEME-5 regular expression -------------------------------------------------------------------------------- CGCCTCCC -------------------------------------------------------------------------------- Time 18.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:8413061-8413141 4.13e-01 80 chrIV:1065729-1065809 1.90e-02 22_[+4(3.64e-06)]_50 chrX:7636214-7636294 1.49e-01 80 chrX:670735-670815 2.35e-03 11_[+3(4.81e-05)]_61 chrIV:17174236-17174316 1.23e-01 [+5(3.19e-05)]_72 chrX:17197970-17198050 1.87e-01 80 chrV:15192575-15192655 1.13e-01 80 chrII:7815065-7815145 8.67e-01 80 chrIII:5981587-5981667 9.10e-02 80 chrII:13814129-13814209 5.77e-01 80 chrX:5813260-5813340 4.99e-01 80 chrIV:10970479-10970559 1.36e-01 80 chrIV:1379124-1379204 6.88e-02 80 chrX:12780834-12780914 3.46e-01 80 chrII:9325716-9325796 4.60e-01 80 chrII:9301201-9301281 1.74e-01 80 chrV:10878328-10878408 1.63e-02 80 chrX:12186258-12186338 8.28e-01 80 chrX:3842660-3842740 2.91e-01 80 chrII:13166002-13166082 3.91e-01 80 chrII:9974349-9974429 1.17e-02 65_[+4(3.65e-05)]_7 chrII:2834257-2834337 5.42e-01 80 chrI:13104177-13104257 8.20e-02 80 chrV:13212727-13212807 1.71e-01 80 chrII:4942990-4943070 8.40e-01 80 chrI:7740012-7740092 2.72e-01 80 chrII:13073286-13073366 6.13e-02 28_[+3(8.85e-05)]_44 chrX:6665589-6665669 3.09e-01 80 chrV:8648398-8648478 3.78e-01 80 chrV:6524895-6524975 5.46e-01 80 chrI:9386020-9386100 8.05e-01 80 chrIV:13057594-13057674 2.13e-01 80 chrIV:1064478-1064558 1.49e-03 25_[+4(3.64e-06)]_47 chrV:10190354-10190434 8.55e-01 80 chrX:14071091-14071171 4.76e-01 80 chrV:18782880-18782960 5.04e-01 80 chrX:13257704-13257784 4.29e-01 80 chrI:13381558-13381638 5.55e-01 80 chrIV:17171913-17171993 5.90e-01 80 chrIII:2870363-2870443 4.91e-01 80 chrX:13334014-13334094 4.25e-03 5_[+3(2.79e-05)]_67 chrII:12980409-12980489 6.22e-01 80 chrX:11481135-11481215 7.24e-01 80 chrIV:1035265-1035345 9.90e-02 80 chrI:2800849-2800929 2.22e-02 66_[+1(3.23e-05)]_6 chrIV:9160008-9160088 9.73e-01 80 chrII:4770028-4770108 8.37e-03 48_[+1(3.23e-05)]_24 chrV:6523038-6523118 9.30e-02 80 chrIV:10463297-10463377 2.95e-02 80 chrV:16278067-16278147 4.43e-01 80 chrX:7445916-7445996 6.16e-01 80 chrX:8604322-8604402 5.28e-02 80 chrIII:12327688-12327768 7.94e-01 80 chrI:12343541-12343621 3.35e-02 26_[+3(8.85e-05)]_46 chrV:2731213-2731293 5.57e-02 25_[+1(5.18e-05)]_47 chrI:5031143-5031223 2.86e-01 80 chrIV:12936525-12936605 9.68e-01 80 chrII:8001601-8001681 3.37e-02 80 chrI:545691-545771 5.91e-01 80 chrI:1914023-1914103 8.29e-01 80 chrI:6081568-6081648 6.37e-02 7_[+3(4.81e-05)]_65 chrIII:1220136-1220216 6.37e-02 80 chrV:8425280-8425360 2.47e-01 80 chrV:11941832-11941912 3.41e-03 62_[+4(2.20e-05)]_10 chrIII:10566083-10566163 2.91e-02 68_[+2(3.11e-05)]_4 chrIII:11197447-11197527 5.63e-02 65_[+3(4.81e-05)]_7 chrX:2695423-2695503 3.24e-01 80 chrV:14640949-14641029 1.38e-02 21_[+1(3.23e-05)]_51 chrV:5030345-5030425 9.58e-01 80 chrV:8403320-8403400 4.43e-01 80 chrX:4698432-4698512 6.36e-02 69_[+1(5.18e-05)]_3 chrI:10231797-10231877 4.31e-04 16_[+1(3.23e-05)]_56 chrIII:936272-936352 3.43e-03 26_[+2(3.11e-05)]_4_[+2(1.80e-05)]_\ 11_[+1(3.23e-05)]_15 chrV:11975377-11975457 1.01e-02 25_[+1(5.18e-05)]_1_[+3(8.85e-05)]_\ 38 chrV:9491750-9491830 3.47e-02 4_[+1(5.18e-05)]_68 chrV:10801275-10801355 4.60e-04 30_[+5(4.46e-06)]_42 chrIII:3370189-3370269 3.46e-03 32_[+2(6.95e-05)]_21_[+1(5.18e-05)]_\ 11 chrIV:7233614-7233694 3.93e-01 80 chrV:13049247-13049327 7.55e-01 80 chrIV:10795846-10795926 7.11e-01 80 chrIII:7758708-7758788 9.85e-02 80 chrV:5027809-5027889 6.86e-03 25_[+4(3.65e-05)]_47 chrII:9231414-9231494 4.47e-01 80 chrII:5323966-5324046 3.25e-03 38_[+1(3.23e-05)]_34 chrV:12467930-12468010 4.40e-01 80 chrI:7287902-7287982 3.91e-02 30_[+4(5.81e-05)]_42 chrX:15424215-15424295 2.89e-02 49_[+1(5.18e-05)]_23 chrIV:10469678-10469758 2.55e-01 80 chrII:5748536-5748616 2.06e-01 80 chrIII:7479088-7479168 9.41e-03 80 chrV:13606995-13607075 3.46e-01 80 chrV:9255655-9255735 2.17e-01 16_[+3(6.83e-05)]_56 chrX:10477700-10477780 4.44e-02 80 chrIV:7393885-7393965 8.25e-02 80 chrIII:946481-946561 3.73e-03 28_[+2(3.11e-05)]_28_[+1(3.23e-05)]_\ 8 chrV:20752792-20752872 9.52e-03 40_[+2(1.80e-05)]_32 chrX:4102321-4102401 7.28e-02 80 chrX:6456732-6456812 3.92e-02 72_[+3(6.83e-05)] chrIV:3158335-3158415 1.81e-01 80 chrIII:12849836-12849916 7.87e-02 38_[+2(1.80e-05)]_34 chrI:10753118-10753198 2.42e-01 80 chrIV:10761547-10761627 4.45e-03 80 chrIV:9118544-9118624 1.51e-03 23_[+4(7.13e-06)]_49 chrIV:12199837-12199917 1.49e-01 80 chrV:11470392-11470472 7.28e-01 80 chrV:9791481-9791561 7.35e-01 80 chrIV:12197828-12197908 1.74e-02 80 chrII:7639216-7639296 2.82e-02 27_[+1(5.18e-05)]_45 chrIV:11289113-11289193 7.02e-02 80 chrII:1949291-1949371 3.95e-01 80 chrX:3153330-3153410 1.01e-01 80 chrIII:9289998-9290078 4.17e-01 80 chrI:3113706-3113786 3.11e-02 80 chrX:16550739-16550819 9.04e-02 80 chrII:5585935-5586015 5.19e-01 80 chrV:8949159-8949239 4.02e-01 80 chrI:5810131-5810211 8.52e-02 33_[+2(6.95e-05)]_39 chrX:5944065-5944145 4.57e-01 80 chrII:8625273-8625353 3.29e-01 80 chrIII:2760902-2760982 8.79e-01 80 chrV:7786810-7786890 2.21e-01 80 chrI:6389771-6389851 3.78e-03 [+1(3.23e-05)]_72 chrI:7354320-7354400 2.30e-01 59_[+1(5.18e-05)]_13 chrIII:11881722-11881802 1.92e-01 80 chrIV:1068885-1068965 4.88e-01 80 chrII:11153269-11153349 2.63e-01 80 chrV:10870179-10870259 3.27e-01 80 chrX:2439854-2439934 9.95e-02 80 chrX:6517530-6517610 9.81e-01 80 chrII:12879939-12880019 2.02e-04 24_[+4(7.13e-06)]_48 chrI:6418830-6418910 3.89e-01 80 chrIII:11026782-11026862 1.15e-02 3_[+1(3.23e-05)]_69 chrII:9620344-9620424 8.36e-02 62_[+3(4.81e-05)]_10 chrIII:13059493-13059573 6.57e-02 80 chrIII:6169058-6169138 5.65e-01 80 chrX:6653337-6653417 6.00e-02 62_[+2(1.80e-05)]_10 chrX:13803383-13803463 1.11e-01 80 chrX:11680954-11681034 1.22e-02 80 chrX:1272690-1272770 1.05e-01 80 chrX:9540600-9540680 7.26e-01 80 chrIII:3764158-3764238 4.89e-01 80 chrV:14503252-14503332 1.11e-02 80 chrX:10231046-10231126 1.57e-01 80 chrIII:7453837-7453917 7.67e-01 80 chrX:6530749-6530829 1.99e-01 80 chrV:10802234-10802314 1.98e-02 72_[+1(3.23e-05)] chrV:10693906-10693986 9.76e-02 80 chrX:10480736-10480816 6.81e-01 80 chrV:5192677-5192757 6.46e-01 80 chrIII:4506878-4506958 6.64e-01 80 chrIII:3253882-3253962 9.95e-02 22_[+1(5.18e-05)]_50 chrX:17139520-17139600 5.88e-02 6_[+3(6.83e-05)]_66 chrIV:12046979-12047059 7.56e-01 80 chrV:16357426-16357506 1.14e-01 80 chrX:12781896-12781976 6.43e-01 80 chrV:18826598-18826678 4.20e-03 80 chrIII:6179200-6179280 2.06e-01 80 chrII:9291786-9291866 5.32e-02 80 chrIII:5814859-5814939 8.18e-02 80 chrV:12512940-12513020 3.09e-01 80 chrV:12475516-12475596 3.55e-01 80 chrV:15666875-15666955 1.35e-02 80 chrX:13221540-13221620 6.29e-01 80 chrV:3388477-3388557 1.71e-02 21_[+3(2.79e-05)]_51 chrIII:9930514-9930594 4.43e-01 80 chrX:6025150-6025230 9.35e-01 80 chrV:8768627-8768707 1.99e-01 80 chrIII:9722208-9722288 6.30e-02 80 chrX:14214661-14214741 1.04e-01 43_[+3(2.79e-05)]_29 chrI:6416926-6417006 3.66e-01 80 chrII:3911424-3911504 3.57e-02 80 chrI:4099680-4099760 1.85e-02 71_[+1(3.23e-05)]_1 chrX:8932534-8932614 2.17e-01 80 chrIII:13626838-13626918 8.12e-01 80 chrII:915387-915467 3.68e-02 25_[+2(6.95e-05)]_47 chrIII:1028405-1028485 5.40e-02 43_[+1(5.18e-05)]_29 chrIV:4486894-4486974 2.14e-02 65_[+4(4.38e-05)]_7 chrV:15888024-15888104 8.38e-01 80 chrI:5309759-5309839 3.64e-02 80 chrV:348134-348214 2.72e-03 12_[+2(1.80e-05)]_60 chrX:8440211-8440291 8.03e-01 80 chrX:12230488-12230568 7.80e-01 80 chrIV:3613358-3613438 1.59e-02 71_[+4(5.46e-05)]_1 chrV:10256178-10256258 2.63e-01 80 chrII:13668986-13669066 4.85e-05 27_[+4(3.64e-06)]_20_[+4(6.55e-05)]_\ 7_[+5(4.46e-06)]_2 chrII:6615405-6615485 4.85e-02 58_[+3(6.83e-05)]_14 chrV:7744214-7744294 1.73e-02 11_[+4(3.64e-06)]_61 chrI:12552892-12552972 2.43e-01 80 chrX:14816857-14816937 8.85e-03 42_[+1(3.23e-05)]_30 chrIII:12317645-12317725 4.65e-02 63_[+1(3.23e-05)]_9 chrI:6294068-6294148 2.44e-01 80 chrII:14811626-14811706 9.48e-01 80 chrIV:8032318-8032398 1.18e-01 9_[+1(5.18e-05)]_63 chrI:8302184-8302264 4.56e-02 59_[+1(5.18e-05)]_13 chrX:8567330-8567410 1.07e-01 40_[+1(3.23e-05)]_32 chrIII:4240313-4240393 1.99e-01 52_[+2(6.95e-05)]_20 chrV:9679300-9679380 2.39e-01 80 chrX:5252911-5252991 9.45e-02 66_[+3(2.79e-05)]_6 chrII:7695774-7695854 4.89e-01 80 chrI:10833507-10833587 2.48e-01 80 chrII:13079024-13079104 6.35e-03 30_[+1(5.18e-05)]_42 chrIII:154340-154420 2.60e-01 80 chrIV:11284261-11284341 5.78e-02 80 chrII:8248927-8249007 1.11e-01 28_[+2(1.80e-05)]_44 chrI:4804832-4804912 5.80e-01 80 chrIII:9326704-9326784 9.92e-02 52_[+1(3.23e-05)]_20 chrII:7404226-7404306 1.46e-01 80 chrV:19524789-19524869 4.09e-01 80 chrX:4564842-4564922 4.46e-01 80 chrX:11008225-11008305 7.41e-02 80 chrX:3290332-3290412 4.76e-02 80 chrIII:2725365-2725445 8.45e-01 80 chrII:162350-162430 1.62e-02 68_[+2(6.95e-05)]_4 chrV:18701506-18701586 6.00e-02 27_[+1(3.23e-05)]_45 chrX:1337174-1337254 7.77e-01 80 chrI:12500590-12500670 1.24e-01 80 chrX:440636-440716 2.87e-02 26_[+3(4.81e-05)]_46 chrI:5388659-5388739 2.09e-01 80 chrI:6964443-6964523 8.95e-02 80 chrIV:3012550-3012630 1.13e-02 55_[+1(5.18e-05)]_[+1(5.18e-05)]_9 chrX:2580689-2580769 2.84e-02 3_[+1(3.23e-05)]_69 chrX:11047335-11047415 4.78e-02 80 chrII:6520260-6520340 1.59e-02 59_[+1(5.18e-05)]_13 chrX:17600311-17600391 9.04e-01 80 chrI:3710768-3710848 6.75e-02 47_[+1(3.23e-05)]_25 chrI:14051943-14052023 2.48e-02 80 chrIV:8163810-8163890 4.54e-01 80 chrX:3829773-3829853 3.97e-01 80 chrV:10776834-10776914 1.37e-02 28_[+3(2.79e-05)]_44 chrV:19205541-19205621 2.76e-02 80 chrIII:6180459-6180539 9.48e-01 80 chrII:7277402-7277482 9.99e-02 14_[+1(3.23e-05)]_58 chrII:8387072-8387152 6.14e-01 80 chrX:9568756-9568836 7.53e-02 80 chrV:1607937-1608017 4.56e-02 58_[+3(2.79e-05)]_14 chrX:6536838-6536918 2.82e-01 80 chrII:6026786-6026866 2.99e-01 80 chrI:5408448-5408528 5.73e-02 80 chrII:7273678-7273758 5.37e-03 19_[+1(3.23e-05)]_53 chrX:5669885-5669965 4.60e-01 80 chrII:6413974-6414054 4.83e-01 80 chrII:8384512-8384592 1.09e-02 80 chrIV:14413564-14413644 7.54e-01 80 chrI:4073727-4073807 3.04e-01 80 chrX:11515527-11515607 3.57e-01 80 chrX:17504642-17504722 1.45e-03 25_[+4(4.38e-05)]_18_[+3(4.81e-05)]_\ 21 chrII:6327485-6327565 3.85e-01 80 chrI:3672753-3672833 2.13e-01 68_[+3(4.81e-05)]_4 chrIV:17245342-17245422 4.17e-01 80 chrII:6919611-6919691 1.38e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n05.farnam.hpc.yale.internal ********************************************************************************