******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/him-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:10169033-10169113 1.0000 80 chrIV:11756176-11756256 1.0000 80 chrIV:10826156-10826236 1.0000 80 chrII:14032885-14032965 1.0000 80 chrIV:8796393-8796473 1.0000 80 chrV:3712351-3712431 1.0000 80 chrV:14939571-14939651 1.0000 80 chrX:13532781-13532861 1.0000 80 chrIII:3139291-3139371 1.0000 80 chrIII:20239-20319 1.0000 80 chrI:7515900-7515980 1.0000 80 chrIV:11785270-11785350 1.0000 80 chrII:10761865-10761945 1.0000 80 chrI:7087748-7087828 1.0000 80 chrII:6808658-6808738 1.0000 80 chrV:4238274-4238354 1.0000 80 chrX:11480176-11480256 1.0000 80 chrIV:7623939-7624019 1.0000 80 chrX:7678569-7678649 1.0000 80 chrX:13213601-13213681 1.0000 80 chrV:14143808-14143888 1.0000 80 chrX:3126412-3126492 1.0000 80 chrV:12819352-12819432 1.0000 80 chrX:3535629-3535709 1.0000 80 chrII:3428331-3428411 1.0000 80 chrIV:10477992-10478072 1.0000 80 chrI:7122350-7122430 1.0000 80 chrIII:10151891-10151971 1.0000 80 chrII:4456195-4456275 1.0000 80 chrX:15191257-15191337 1.0000 80 chrI:7421469-7421549 1.0000 80 chrX:13502446-13502526 1.0000 80 chrX:3111188-3111268 1.0000 80 chrII:7319690-7319770 1.0000 80 chrX:8806478-8806558 1.0000 80 chrI:12565495-12565575 1.0000 80 chrX:7689728-7689808 1.0000 80 chrI:12552519-12552599 1.0000 80 chrI:9969574-9969654 1.0000 80 chrV:6350230-6350310 1.0000 80 chrIII:8389555-8389635 1.0000 80 chrIV:5960108-5960188 1.0000 80 chrIII:13698018-13698098 1.0000 80 chrV:6341189-6341269 1.0000 80 chrV:14930276-14930356 1.0000 80 chrX:14636815-14636895 1.0000 80 chrIV:6061120-6061200 1.0000 80 chrIV:10478323-10478403 1.0000 80 chrX:13210593-13210673 1.0000 80 chrIV:4570674-4570754 1.0000 80 chrII:5780055-5780135 1.0000 80 chrI:2672718-2672798 1.0000 80 chrIV:4034971-4035051 1.0000 80 chrX:2604825-2604905 1.0000 80 chrV:10677671-10677751 1.0000 80 chrIV:6958933-6959013 1.0000 80 chrIII:11203144-11203224 1.0000 80 chrII:2962692-2962772 1.0000 80 chrIV:14260867-14260947 1.0000 80 chrV:11349035-11349115 1.0000 80 chrX:15634081-15634161 1.0000 80 chrV:9974371-9974451 1.0000 80 chrIII:4656568-4656648 1.0000 80 chrI:9101084-9101164 1.0000 80 chrX:7284817-7284897 1.0000 80 chrI:10040453-10040533 1.0000 80 chrIII:11204950-11205030 1.0000 80 chrII:6993052-6993132 1.0000 80 chrIV:11495155-11495235 1.0000 80 chrX:7222581-7222661 1.0000 80 chrI:10765785-10765865 1.0000 80 chrII:759902-759982 1.0000 80 chrIV:11793383-11793463 1.0000 80 chrIII:5988163-5988243 1.0000 80 chrX:15193200-15193280 1.0000 80 chrIII:8394962-8395042 1.0000 80 chrI:6441325-6441405 1.0000 80 chrIV:6963884-6963964 1.0000 80 chrI:9092348-9092428 1.0000 80 chrIII:764522-764602 1.0000 80 chrIV:14272638-14272718 1.0000 80 chrI:6398183-6398263 1.0000 80 chrIII:6140130-6140210 1.0000 80 chrV:6655327-6655407 1.0000 80 chrV:20789225-20789305 1.0000 80 chrX:15566764-15566844 1.0000 80 chrX:12629401-12629481 1.0000 80 chrIII:3984277-3984357 1.0000 80 chrI:10030114-10030194 1.0000 80 chrIV:10408819-10408899 1.0000 80 chrX:844793-844873 1.0000 80 chrX:3116336-3116416 1.0000 80 chrX:13739501-13739581 1.0000 80 chrX:15600686-15600766 1.0000 80 chrX:4151225-4151305 1.0000 80 chrV:3717995-3718075 1.0000 80 chrII:5341023-5341103 1.0000 80 chrX:4721143-4721223 1.0000 80 chrX:5820138-5820218 1.0000 80 chrI:10031781-10031861 1.0000 80 chrV:18490579-18490659 1.0000 80 chrX:5976678-5976758 1.0000 80 chrX:1599396-1599476 1.0000 80 chrI:12571890-12571970 1.0000 80 chrIII:5999799-5999879 1.0000 80 chrX:13171363-13171443 1.0000 80 chrIV:2061932-2062012 1.0000 80 chrI:7371997-7372077 1.0000 80 chrX:14640061-14640141 1.0000 80 chrX:13739711-13739791 1.0000 80 chrV:14006988-14007068 1.0000 80 chrIII:5827140-5827220 1.0000 80 chrX:1522157-1522237 1.0000 80 chrI:1598534-1598614 1.0000 80 chrIV:7619436-7619516 1.0000 80 chrIV:7400845-7400925 1.0000 80 chrII:11751773-11751853 1.0000 80 chrI:14769097-14769177 1.0000 80 chrI:2681597-2681677 1.0000 80 chrI:4911970-4912050 1.0000 80 chrIII:2532907-2532987 1.0000 80 chrIV:7663150-7663230 1.0000 80 chrX:4982206-4982286 1.0000 80 chrIV:5951060-5951140 1.0000 80 chrIII:1792089-1792169 1.0000 80 chrX:5981914-5981994 1.0000 80 chrV:9219156-9219236 1.0000 80 chrIII:11388191-11388271 1.0000 80 chrI:13025848-13025928 1.0000 80 chrII:6709150-6709230 1.0000 80 chrIII:4662979-4663059 1.0000 80 chrX:3818678-3818758 1.0000 80 chrV:9966175-9966255 1.0000 80 chrI:9167291-9167371 1.0000 80 chrI:1807983-1808063 1.0000 80 chrX:15983437-15983517 1.0000 80 chrI:2577361-2577441 1.0000 80 chrV:2131502-2131582 1.0000 80 chrX:1062859-1062939 1.0000 80 chrII:5276874-5276954 1.0000 80 chrX:15386104-15386184 1.0000 80 chrX:7327117-7327197 1.0000 80 chrX:15342273-15342353 1.0000 80 chrII:10379788-10379868 1.0000 80 chrX:3049395-3049475 1.0000 80 chrIII:6348779-6348859 1.0000 80 chrIII:8912038-8912118 1.0000 80 chrI:12520489-12520569 1.0000 80 chrI:4496524-4496604 1.0000 80 chrX:932951-933031 1.0000 80 chrIII:7387530-7387610 1.0000 80 chrIII:8392534-8392614 1.0000 80 chrIV:5100238-5100318 1.0000 80 chrX:12828162-12828242 1.0000 80 chrX:15395816-15395896 1.0000 80 chrV:20782335-20782415 1.0000 80 chrI:14346738-14346818 1.0000 80 chrIV:3135161-3135241 1.0000 80 chrIV:10500172-10500252 1.0000 80 chrI:11188225-11188305 1.0000 80 chrII:8796588-8796668 1.0000 80 chrIV:2985817-2985897 1.0000 80 chrX:1529196-1529276 1.0000 80 chrII:5725276-5725356 1.0000 80 chrI:7955062-7955142 1.0000 80 chrV:12026951-12027031 1.0000 80 chrV:9664799-9664879 1.0000 80 chrIV:11349873-11349953 1.0000 80 chrX:9997180-9997260 1.0000 80 chrIV:10327190-10327270 1.0000 80 chrII:7634221-7634301 1.0000 80 chrIV:13877804-13877884 1.0000 80 chrIII:6695348-6695428 1.0000 80 chrX:7821216-7821296 1.0000 80 chrI:1842019-1842099 1.0000 80 chrIV:11765757-11765837 1.0000 80 chrIII:668432-668512 1.0000 80 chrIII:8873366-8873446 1.0000 80 chrII:14036956-14037036 1.0000 80 chrX:4786061-4786141 1.0000 80 chrX:6128428-6128508 1.0000 80 chrV:10722025-10722105 1.0000 80 chrI:3829804-3829884 1.0000 80 chrV:16351128-16351208 1.0000 80 chrV:6658900-6658980 1.0000 80 chrX:4145691-4145771 1.0000 80 chrIV:6393432-6393512 1.0000 80 chrIII:9905296-9905376 1.0000 80 chrIV:7611607-7611687 1.0000 80 chrI:9373433-9373513 1.0000 80 chrV:2133670-2133750 1.0000 80 chrV:2138483-2138563 1.0000 80 chrIV:6809967-6810047 1.0000 80 chrI:7954862-7954942 1.0000 80 chrI:1691480-1691560 1.0000 80 chrI:7951896-7951976 1.0000 80 chrIII:5845623-5845703 1.0000 80 chrV:1158463-1158543 1.0000 80 chrIII:7580766-7580846 1.0000 80 chrV:6893843-6893923 1.0000 80 chrII:8784741-8784821 1.0000 80 chrIII:3677437-3677517 1.0000 80 chrII:7327146-7327226 1.0000 80 chrIII:880275-880355 1.0000 80 chrI:4900949-4901029 1.0000 80 chrIV:12771551-12771631 1.0000 80 chrII:755849-755929 1.0000 80 chrII:1344714-1344794 1.0000 80 chrX:4896261-4896341 1.0000 80 chrV:20879445-20879525 1.0000 80 chrIV:4210972-4211052 1.0000 80 chrV:20785620-20785700 1.0000 80 chrIII:13724450-13724530 1.0000 80 chrIII:6006732-6006812 1.0000 80 chrIII:8973282-8973362 1.0000 80 chrI:9846500-9846580 1.0000 80 chrI:10037751-10037831 1.0000 80 chrX:8017487-8017567 1.0000 80 chrX:11473393-11473473 1.0000 80 chrI:13547422-13547502 1.0000 80 chrIII:5755530-5755610 1.0000 80 chrV:2135612-2135692 1.0000 80 chrI:7124449-7124529 1.0000 80 chrIII:12472649-12472729 1.0000 80 chrII:8131448-8131528 1.0000 80 chrV:7106783-7106863 1.0000 80 chrX:17466846-17466926 1.0000 80 chrII:7328672-7328752 1.0000 80 chrII:6820485-6820565 1.0000 80 chrIII:2716481-2716561 1.0000 80 chrIII:30643-30723 1.0000 80 chrI:6435849-6435929 1.0000 80 chrI:9172740-9172820 1.0000 80 chrIII:13058261-13058341 1.0000 80 chrIII:11201197-11201277 1.0000 80 chrX:13768706-13768786 1.0000 80 chrX:1018739-1018819 1.0000 80 chrI:12546728-12546808 1.0000 80 chrIV:4007786-4007866 1.0000 80 chrI:10772440-10772520 1.0000 80 chrIV:5103485-5103565 1.0000 80 chrV:12038932-12039012 1.0000 80 chrV:965080-965160 1.0000 80 chrI:7412950-7413030 1.0000 80 chrI:3292844-3292924 1.0000 80 chrIII:67317-67397 1.0000 80 chrX:8801082-8801162 1.0000 80 chrV:10174797-10174877 1.0000 80 chrV:10260806-10260886 1.0000 80 chrII:5336125-5336205 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_him-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/him-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.273 C 0.233 G 0.234 T 0.261 Background letter frequencies (from file dataset with add-one prior applied): A 0.273 C 0.233 G 0.234 T 0.26 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCTTYTYY MEME-1 width = 8 sites = 93 llr = 682 E-value = 2.6e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTTYTYY MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :71:5144 probability G 2::::::: matrix T 839a5966 bits 2.1 1.9 * 1.7 * 1.5 ** * Relative 1.3 **** * Entropy 1.1 ******** (10.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTCTTT consensus T T CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTYTYY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:2716481-2716561 60 1.68e-05 CGCTTCGTTT TCTTCTTT TGGCTGGTCA chrIII:3677437-3677517 36 1.68e-05 TTCGTTTTCT TCTTCTTT TTTCAGCATT chrI:7951896-7951976 19 1.68e-05 CTCCCTCTCT TCTTCTTT TTTTGCTATC chrIV:11765757-11765837 54 1.68e-05 CTAAGCTTCT TCTTCTTT AAATTCTTAG chrII:5725276-5725356 48 1.68e-05 CGCTTCTTCG TCTTCTTT CGCTTCTTCT chrII:10379788-10379868 70 1.68e-05 CTCACTCACC TCTTCTTT TTC chrI:9167291-9167371 13 1.68e-05 TGAAAGTTTT TCTTCTTT TTTTTTTCGT chrI:14769097-14769177 49 1.68e-05 ttcttcttct tcttcttT GCTCAAAAAG chrX:1599396-1599476 33 1.68e-05 ATCTCACTTC TCTTCTTT ATACTAATTC chrI:10031781-10031861 2 1.68e-05 G TCTTCTTT CTTTTTCTTT chrX:2604825-2604905 30 1.68e-05 CATTCAAAAA TCTTCTTT TCTCATTTTC chrV:14930276-14930356 13 1.68e-05 CTCGTCGGCT TCTTCTTT GTGAGTGAGA chrIII:13058261-13058341 67 3.55e-05 TTACTTTTTC TCTTTTTT TTTCTT chrIII:30643-30723 26 3.55e-05 GAACTCGGTT TCTTTTTT TCTGGAGAGA chrI:2681597-2681677 23 3.55e-05 CTCAACGGAC TCTTTTTT TTTCGTGAGC chrIV:7619436-7619516 30 3.55e-05 ATCCCTTCCA TCTTTTTT CTATCCACGG chrIII:6140130-6140210 53 3.55e-05 CTCTGTGCTC TCTTTTTT CATTGATACT chrI:6398183-6398263 2 3.55e-05 C TCTTTTTT CTGTTTTTTT chrIV:6061120-6061200 53 3.55e-05 CCTTCTTCAT TCTTTTTT TTTCTCTTTA chrV:14143808-14143888 44 3.55e-05 aagGACGCCT TCTTTTTT TTTTCTTTTT chrIV:11785270-11785350 40 3.55e-05 CCATCAGGGC TCTTTTTT TGTGTGTTCG chrIII:3139291-3139371 2 3.55e-05 T TCTTTTTT TGCTCCGCGA chrV:10174797-10174877 69 5.05e-05 TCTCTATGAG TCTTCTCT TCGA chrIII:8973282-8973362 8 5.05e-05 GTGTCTC TCTTCTCT TTCACGTCTC chrX:13210593-13210673 27 5.05e-05 AAAGGGACCC TCTTCTCT TCACTGGATG chrII:6820485-6820565 71 8.23e-05 cttcctccta tcttcttc tt chrI:9846500-9846580 70 8.23e-05 AGAAGGTTCT TCTTCTTC GTT chrV:6893843-6893923 33 8.23e-05 GCCTTCTTCC TCTTTTCT CTTTTCCTCT chrX:5981914-5981994 6 8.23e-05 ctccg tcttcttc cgctttgcct chrX:4982206-4982286 18 8.23e-05 GCCAACGTCG TCTTCTTC CCCTCTTCCG chrX:15566764-15566844 1 8.23e-05 . TCTTCTTC TGCTTTTGCT chrV:10677671-10677751 37 8.23e-05 ttcttctcct tcttcttc ttcgtcgtcg chrX:13502446-13502526 53 8.23e-05 AGGCTTGGGC TCTTTTCT CACTCTCAAT chrX:13532781-13532861 3 8.23e-05 ct tcttcttc tCCCCTATCT chrI:7412950-7413030 23 9.91e-05 tttgtttctc tctttttc ttgttcCGCC chrII:755849-755929 13 9.91e-05 TTCCACACTC TCTTTTTC GGGTAATCTA chrIV:10327190-10327270 47 9.91e-05 AGTTTCTGTG TCTTTTTC TTTTGAAAGT chrI:2577361-2577441 64 9.91e-05 ATTAGTGTGC TCTTTTTC TGACTCTTT chrIII:11204950-11205030 41 9.91e-05 GGCCAAGTGT TCTTTTTC GTGGCTCGCC chrI:13547422-13547502 21 1.13e-04 TTCTCCAATT TCTTCTCC TTCTAGAGAG chrX:13768706-13768786 31 1.31e-04 TTTTCTATTC TTTTCTTT CTCCATCTGC chrX:14640061-14640141 68 1.31e-04 CCCGCGCCTT TTTTCTTT TCACT chrIII:10151891-10151971 35 1.46e-04 CCTCCTTCCA TCTTTTCC TCGTCCCCAC chrIV:2061932-2062012 29 1.67e-04 TACTTTTTCA TTTTTTTT TCATTCTCAA chrII:5341023-5341103 30 1.67e-04 AATCTGGTAG TTTTTTTT CCAGAAATGT chrIV:5103485-5103565 22 1.84e-04 AAACAAAACA TTTtctct ctcaattctc chrI:6435849-6435929 56 1.84e-04 TTTTCCCCTT TTTTCTCT CCCTCACTTC chrI:1691480-1691560 46 1.84e-04 TCATTTCTCA TTTTCTCT GGGGGTTCTT chrIV:6393432-6393512 24 1.84e-04 CTGTGCTCAT TTTTCTCT GTCTCTTTGg chrIV:5951060-5951140 55 1.84e-04 TTTCTCGATT TTTTCTCT TCTGAACAAC chrX:7284817-7284897 73 1.84e-04 GCACGACTAC Ttttctct chrI:7955062-7955142 27 2.35e-04 CGCCTCTTCG TTTTTTCT CCTCACCCTG chrX:15634081-15634161 17 2.35e-04 AAGACGTCAC TTTTTTCT CCCCCTCTTC chrI:2672718-2672798 10 2.35e-04 CAAAATTAC TTTTTTCT AAAACAAGAT chrIII:8389555-8389635 18 2.35e-04 TTTGCAGGAC TTTTTTCT GAAATTGGAA chrX:11480176-11480256 9 2.51e-04 GCATTCCT GCTTTTTT CGTCCTTTCT chrIII:13724450-13724530 33 2.84e-04 CGGAACGTCC GCTTCTCT CTATTGTTCA chrII:1344714-1344794 73 2.84e-04 CAATTCATCA TTTTTTTC chrI:3829804-3829884 45 2.84e-04 CGGAGCCCCC GCTTCTCT GCTCTCTGGC chrV:6350230-6350310 33 2.84e-04 GCTCGCCCGA GCTTCTCT TCCATGCTCT chrV:14939571-14939651 45 2.84e-04 ATTTAATGAC TTTTTTTC CAAAAGGTGT chrII:7319690-7319770 13 2.99e-04 TCCGGTTCCC TTTTCTCC CATGCGCGAT chrIII:5755530-5755610 69 3.27e-04 ATCCGCATGC GCTTCTTC CACT chrIII:7580766-7580846 10 3.27e-04 TAGAAAAGA GCTTTTCT GTGCTCAAAC chrV:2138483-2138563 50 3.27e-04 AAACAGAGAC GCTTCTTC TATTTGGCTC chrX:844793-844873 26 3.27e-04 TTGCCCCGTG GCTTCTTC ATCCTGCACA chrIV:11793383-11793463 56 3.27e-04 GTTTTTGAGA GCTTTTCT GATGTGTGAT chrIII:8392534-8392614 71 3.44e-04 CGAAGAGTTA TTTTTTCC CG chrX:3818678-3818758 39 3.44e-04 TTTTTTTGTG TTTTTTCC TCACTTTCCC chrI:6441325-6441405 42 4.01e-04 ACAAGCCACG TCCTCTTT ATAACCAATC chrV:6341189-6341269 13 4.01e-04 TTTTTCCATT TCTTCCTT CCCATCCAAT chrIII:12472649-12472729 22 4.65e-04 CACTTTTCTT GCTTTTCC TCCTCCTTCC chrI:13025848-13025928 68 4.65e-04 TATAAGTTTC GCTTTTCC CGTTA chrII:6808658-6808738 3 4.65e-04 tt tccttttt ctgctGGTTT chrV:965080-965160 50 5.11e-04 TTGAAAATGA GTTTTTTT GGTATTTAAT chrIII:6695348-6695428 45 5.11e-04 CAGTAGCACG TCTTCCCT ATTCCCTCTC chrIV:7400845-7400925 64 5.11e-04 ACTCTCTTAT TCCTCTCT ATTTCTCTT chrI:14346738-14346818 69 5.26e-04 GGCGCCATTG GTTTCTCT AAAT chrIII:11201197-11201277 11 5.83e-04 CTGAGCTCTT TCCTCTTC CATGGATGTA chrI:9172740-9172820 2 5.83e-04 T TCCTTTCT GAACAAGTCG chrIV:5100238-5100318 4 5.83e-04 TCC TCTTCCTC TCCGTCCCCT chrV:6655327-6655407 9 5.83e-04 ATCCAAAT TCTTCCTC ACCCGGTGGC chrIV:12771551-12771631 20 6.15e-04 GCGCCTCTCC GTTTTTCT GTCTGCGTGT chrI:4496524-4496604 67 6.15e-04 AAGGGAGTCA Gtttttct tgttct chrX:13739501-13739581 55 6.15e-04 GGTCGGAAAT GTTTCTTC GGGAGGAGCT chrIV:4210972-4211052 37 6.45e-04 GGAAACAGTC TCTTTCTC TCACTGCGCC chrII:5780055-5780135 59 6.45e-04 CATTGAGTAC TCTTTCTC TCTTTTTGCT chrV:9966175-9966255 9 6.86e-04 ACGTTTTC GTTTTTTC ATGCGGGTGG chrIV:10408819-10408899 29 7.33e-04 TGAATTATAG TTTTCCTT GCTCAACAGA chrII:5336125-5336205 3 7.60e-04 GT TCTTTCCC TCATCCACAC chrI:12520489-12520569 60 7.60e-04 TTCTTCCACT TCCTTTCC TCCCGTCTTT chrIV:4007786-4007866 62 8.43e-04 TCTCCGCCCC TTCTCTCT GCTCGAGTTg chrV:14006988-14007068 3 8.43e-04 at ttctctct ctctctcCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTYTYY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:2716481-2716561 1.7e-05 59_[+1]_13 chrIII:3677437-3677517 1.7e-05 35_[+1]_37 chrI:7951896-7951976 1.7e-05 18_[+1]_54 chrIV:11765757-11765837 1.7e-05 53_[+1]_19 chrII:5725276-5725356 1.7e-05 47_[+1]_25 chrII:10379788-10379868 1.7e-05 69_[+1]_3 chrI:9167291-9167371 1.7e-05 12_[+1]_60 chrI:14769097-14769177 1.7e-05 48_[+1]_24 chrX:1599396-1599476 1.7e-05 32_[+1]_40 chrI:10031781-10031861 1.7e-05 1_[+1]_71 chrX:2604825-2604905 1.7e-05 29_[+1]_43 chrV:14930276-14930356 1.7e-05 12_[+1]_60 chrIII:13058261-13058341 3.5e-05 66_[+1]_6 chrIII:30643-30723 3.5e-05 25_[+1]_47 chrI:2681597-2681677 3.5e-05 22_[+1]_50 chrIV:7619436-7619516 3.5e-05 29_[+1]_43 chrIII:6140130-6140210 3.5e-05 52_[+1]_20 chrI:6398183-6398263 3.5e-05 1_[+1]_71 chrIV:6061120-6061200 3.5e-05 52_[+1]_20 chrV:14143808-14143888 3.5e-05 43_[+1]_29 chrIV:11785270-11785350 3.5e-05 39_[+1]_33 chrIII:3139291-3139371 3.5e-05 1_[+1]_71 chrV:10174797-10174877 5.1e-05 68_[+1]_4 chrIII:8973282-8973362 5.1e-05 7_[+1]_65 chrX:13210593-13210673 5.1e-05 26_[+1]_46 chrII:6820485-6820565 8.2e-05 70_[+1]_2 chrI:9846500-9846580 8.2e-05 69_[+1]_3 chrV:6893843-6893923 8.2e-05 32_[+1]_40 chrX:5981914-5981994 8.2e-05 5_[+1]_67 chrX:4982206-4982286 8.2e-05 17_[+1]_55 chrX:15566764-15566844 8.2e-05 [+1]_72 chrV:10677671-10677751 8.2e-05 36_[+1]_36 chrX:13502446-13502526 8.2e-05 52_[+1]_20 chrX:13532781-13532861 8.2e-05 2_[+1]_70 chrI:7412950-7413030 9.9e-05 22_[+1]_50 chrII:755849-755929 9.9e-05 12_[+1]_60 chrIV:10327190-10327270 9.9e-05 46_[+1]_26 chrI:2577361-2577441 9.9e-05 63_[+1]_9 chrIII:11204950-11205030 9.9e-05 40_[+1]_32 chrI:13547422-13547502 0.00011 20_[+1]_52 chrX:13768706-13768786 0.00013 30_[+1]_42 chrX:14640061-14640141 0.00013 67_[+1]_5 chrIII:10151891-10151971 0.00015 34_[+1]_38 chrIV:2061932-2062012 0.00017 28_[+1]_44 chrII:5341023-5341103 0.00017 29_[+1]_43 chrIV:5103485-5103565 0.00018 21_[+1]_51 chrI:6435849-6435929 0.00018 55_[+1]_17 chrI:1691480-1691560 0.00018 45_[+1]_27 chrIV:6393432-6393512 0.00018 23_[+1]_49 chrIV:5951060-5951140 0.00018 54_[+1]_18 chrX:7284817-7284897 0.00018 72_[+1] chrI:7955062-7955142 0.00023 26_[+1]_46 chrX:15634081-15634161 0.00023 16_[+1]_56 chrI:2672718-2672798 0.00023 9_[+1]_63 chrIII:8389555-8389635 0.00023 17_[+1]_55 chrX:11480176-11480256 0.00025 8_[+1]_64 chrIII:13724450-13724530 0.00028 32_[+1]_40 chrII:1344714-1344794 0.00028 72_[+1] chrI:3829804-3829884 0.00028 44_[+1]_28 chrV:6350230-6350310 0.00028 32_[+1]_40 chrV:14939571-14939651 0.00028 44_[+1]_28 chrII:7319690-7319770 0.0003 12_[+1]_60 chrIII:5755530-5755610 0.00033 68_[+1]_4 chrIII:7580766-7580846 0.00033 9_[+1]_63 chrV:2138483-2138563 0.00033 49_[+1]_23 chrX:844793-844873 0.00033 25_[+1]_47 chrIV:11793383-11793463 0.00033 55_[+1]_17 chrIII:8392534-8392614 0.00034 70_[+1]_2 chrX:3818678-3818758 0.00034 38_[+1]_34 chrI:6441325-6441405 0.0004 41_[+1]_31 chrV:6341189-6341269 0.0004 12_[+1]_60 chrIII:12472649-12472729 0.00047 21_[+1]_51 chrI:13025848-13025928 0.00047 67_[+1]_5 chrII:6808658-6808738 0.00047 2_[+1]_70 chrV:965080-965160 0.00051 49_[+1]_23 chrIII:6695348-6695428 0.00051 44_[+1]_28 chrIV:7400845-7400925 0.00051 63_[+1]_9 chrI:14346738-14346818 0.00053 68_[+1]_4 chrIII:11201197-11201277 0.00058 10_[+1]_62 chrI:9172740-9172820 0.00058 1_[+1]_71 chrIV:5100238-5100318 0.00058 3_[+1]_69 chrV:6655327-6655407 0.00058 8_[+1]_64 chrIV:12771551-12771631 0.00061 19_[+1]_53 chrI:4496524-4496604 0.00061 66_[+1]_6 chrX:13739501-13739581 0.00061 54_[+1]_18 chrIV:4210972-4211052 0.00065 36_[+1]_36 chrII:5780055-5780135 0.00065 58_[+1]_14 chrV:9966175-9966255 0.00069 8_[+1]_64 chrIV:10408819-10408899 0.00073 28_[+1]_44 chrII:5336125-5336205 0.00076 2_[+1]_70 chrI:12520489-12520569 0.00076 59_[+1]_13 chrIV:4007786-4007866 0.00084 61_[+1]_11 chrV:14006988-14007068 0.00084 2_[+1]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTYTYY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTTYTYY width=8 seqs=93 chrIII:2716481-2716561 ( 60) TCTTCTTT 1 chrIII:3677437-3677517 ( 36) TCTTCTTT 1 chrI:7951896-7951976 ( 19) TCTTCTTT 1 chrIV:11765757-11765837 ( 54) TCTTCTTT 1 chrII:5725276-5725356 ( 48) TCTTCTTT 1 chrII:10379788-10379868 ( 70) TCTTCTTT 1 chrI:9167291-9167371 ( 13) TCTTCTTT 1 chrI:14769097-14769177 ( 49) TCTTCTTT 1 chrX:1599396-1599476 ( 33) TCTTCTTT 1 chrI:10031781-10031861 ( 2) TCTTCTTT 1 chrX:2604825-2604905 ( 30) TCTTCTTT 1 chrV:14930276-14930356 ( 13) TCTTCTTT 1 chrIII:13058261-13058341 ( 67) TCTTTTTT 1 chrIII:30643-30723 ( 26) TCTTTTTT 1 chrI:2681597-2681677 ( 23) TCTTTTTT 1 chrIV:7619436-7619516 ( 30) TCTTTTTT 1 chrIII:6140130-6140210 ( 53) TCTTTTTT 1 chrI:6398183-6398263 ( 2) TCTTTTTT 1 chrIV:6061120-6061200 ( 53) TCTTTTTT 1 chrV:14143808-14143888 ( 44) TCTTTTTT 1 chrIV:11785270-11785350 ( 40) TCTTTTTT 1 chrIII:3139291-3139371 ( 2) TCTTTTTT 1 chrV:10174797-10174877 ( 69) TCTTCTCT 1 chrIII:8973282-8973362 ( 8) TCTTCTCT 1 chrX:13210593-13210673 ( 27) TCTTCTCT 1 chrII:6820485-6820565 ( 71) TCTTCTTC 1 chrI:9846500-9846580 ( 70) TCTTCTTC 1 chrV:6893843-6893923 ( 33) TCTTTTCT 1 chrX:5981914-5981994 ( 6) TCTTCTTC 1 chrX:4982206-4982286 ( 18) TCTTCTTC 1 chrX:15566764-15566844 ( 1) TCTTCTTC 1 chrV:10677671-10677751 ( 37) TCTTCTTC 1 chrX:13502446-13502526 ( 53) TCTTTTCT 1 chrX:13532781-13532861 ( 3) TCTTCTTC 1 chrI:7412950-7413030 ( 23) TCTTTTTC 1 chrII:755849-755929 ( 13) TCTTTTTC 1 chrIV:10327190-10327270 ( 47) TCTTTTTC 1 chrI:2577361-2577441 ( 64) TCTTTTTC 1 chrIII:11204950-11205030 ( 41) TCTTTTTC 1 chrI:13547422-13547502 ( 21) TCTTCTCC 1 chrX:13768706-13768786 ( 31) TTTTCTTT 1 chrX:14640061-14640141 ( 68) TTTTCTTT 1 chrIII:10151891-10151971 ( 35) TCTTTTCC 1 chrIV:2061932-2062012 ( 29) TTTTTTTT 1 chrII:5341023-5341103 ( 30) TTTTTTTT 1 chrIV:5103485-5103565 ( 22) TTTTCTCT 1 chrI:6435849-6435929 ( 56) TTTTCTCT 1 chrI:1691480-1691560 ( 46) TTTTCTCT 1 chrIV:6393432-6393512 ( 24) TTTTCTCT 1 chrIV:5951060-5951140 ( 55) TTTTCTCT 1 chrX:7284817-7284897 ( 73) TTTTCTCT 1 chrI:7955062-7955142 ( 27) TTTTTTCT 1 chrX:15634081-15634161 ( 17) TTTTTTCT 1 chrI:2672718-2672798 ( 10) TTTTTTCT 1 chrIII:8389555-8389635 ( 18) TTTTTTCT 1 chrX:11480176-11480256 ( 9) GCTTTTTT 1 chrIII:13724450-13724530 ( 33) GCTTCTCT 1 chrII:1344714-1344794 ( 73) TTTTTTTC 1 chrI:3829804-3829884 ( 45) GCTTCTCT 1 chrV:6350230-6350310 ( 33) GCTTCTCT 1 chrV:14939571-14939651 ( 45) TTTTTTTC 1 chrII:7319690-7319770 ( 13) TTTTCTCC 1 chrIII:5755530-5755610 ( 69) GCTTCTTC 1 chrIII:7580766-7580846 ( 10) GCTTTTCT 1 chrV:2138483-2138563 ( 50) GCTTCTTC 1 chrX:844793-844873 ( 26) GCTTCTTC 1 chrIV:11793383-11793463 ( 56) GCTTTTCT 1 chrIII:8392534-8392614 ( 71) TTTTTTCC 1 chrX:3818678-3818758 ( 39) TTTTTTCC 1 chrI:6441325-6441405 ( 42) TCCTCTTT 1 chrV:6341189-6341269 ( 13) TCTTCCTT 1 chrIII:12472649-12472729 ( 22) GCTTTTCC 1 chrI:13025848-13025928 ( 68) GCTTTTCC 1 chrII:6808658-6808738 ( 3) TCCTTTTT 1 chrV:965080-965160 ( 50) GTTTTTTT 1 chrIII:6695348-6695428 ( 45) TCTTCCCT 1 chrIV:7400845-7400925 ( 64) TCCTCTCT 1 chrI:14346738-14346818 ( 69) GTTTCTCT 1 chrIII:11201197-11201277 ( 11) TCCTCTTC 1 chrI:9172740-9172820 ( 2) TCCTTTCT 1 chrIV:5100238-5100318 ( 4) TCTTCCTC 1 chrV:6655327-6655407 ( 9) TCTTCCTC 1 chrIV:12771551-12771631 ( 20) GTTTTTCT 1 chrI:4496524-4496604 ( 67) GTTTTTCT 1 chrX:13739501-13739581 ( 55) GTTTCTTC 1 chrIV:4210972-4211052 ( 37) TCTTTCTC 1 chrII:5780055-5780135 ( 59) TCTTTCTC 1 chrV:9966175-9966255 ( 9) GTTTTTTC 1 chrIV:10408819-10408899 ( 29) TTTTCCTT 1 chrII:5336125-5336205 ( 3) TCTTTCCC 1 chrI:12520489-12520569 ( 60) TCCTTTCC 1 chrIV:4007786-4007866 ( 62) TTCTCTCT 1 chrV:14006988-14007068 ( 3) TTCTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTYTYY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.50978 E= 2.6e-031 -1318 -1318 -35 165 -1318 159 -1318 21 -1318 -144 -1318 181 -1318 -1318 -1318 194 -1318 121 -1318 83 -1318 -144 -1318 181 -1318 77 -1318 121 -1318 61 -1318 131 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTYTYY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 93 E= 2.6e-031 0.000000 0.000000 0.182796 0.817204 0.000000 0.698925 0.000000 0.301075 0.000000 0.086022 0.000000 0.913978 0.000000 0.000000 0.000000 1.000000 0.000000 0.537634 0.000000 0.462366 0.000000 0.086022 0.000000 0.913978 0.000000 0.397849 0.000000 0.602151 0.000000 0.354839 0.000000 0.645161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTYTYY MEME-1 regular expression -------------------------------------------------------------------------------- T[CT]TT[CT]T[TC][TC] -------------------------------------------------------------------------------- Time 10.62 secs. ******************************************************************************** ******************************************************************************** MOTIF AAARAGAA MEME-2 width = 8 sites = 115 llr = 783 E-value = 2.9e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAARAGAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 7776a2a7 pos.-specific C 1::::::: probability G 2334:8:3 matrix T :::::::: bits 2.1 1.9 * 1.7 * * 1.5 * * Relative 1.3 *** Entropy 1.1 ******* (9.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAGAA consensus GGGG A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAGAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:7412950-7413030 61 2.64e-05 TTTTTTCAAA AAAAAGAA CAGAAAAACG chrIII:11201197-11201277 35 2.64e-05 TGTAGAAGAA AAAAAGAA GAACACTGGA chrI:7951896-7951976 66 2.64e-05 cagaagaaga aaaaagaa ggagaCA chrI:7954862-7954942 20 2.64e-05 agagagagag aaaaagaa gagTTTTGTG chrIV:6809967-6810047 38 2.64e-05 AGTAAAAGGA AAAAAGAA GACGAAGAAG chrV:2138483-2138563 28 2.64e-05 CCGTCATTCG AAAAAGAA AAAAAAACAG chrII:6709150-6709230 28 2.64e-05 GCCATGGCAC Aaaaagaa gaaaagagaa chrIV:5951060-5951140 13 2.64e-05 GCAAAAATAG AAAAAGAA ATGCACTTCC chrIV:7663150-7663230 53 2.64e-05 ACTCTCCACT AAAAAGAA GAACCAAAAC chrX:1522157-1522237 72 2.64e-05 AGAGAAGAAG AAAAAGAA G chrI:10031781-10031861 31 2.64e-05 GTTTTCCTCA AAAAAGAA ACCATTTTTG chrX:5820138-5820218 36 2.64e-05 GGAGAAGCAA AAAAAGAA GAGCTGGCAA chrI:10030114-10030194 30 2.64e-05 GGACAGAAAA AAAAAGAA TTCTTAGCAT chrIV:6061120-6061200 14 2.64e-05 GAAGAGAGAA AAAAAGAA GATCCCGACC chrX:3111188-3111268 24 2.64e-05 ATAGTGAGGA AAAAAGAA GATGGGCTCC chrI:4900949-4901029 31 4.91e-05 GATAAGAGAA AAAGAGAA GAGAGGAGCG chrII:7634221-7634301 65 4.91e-05 TGTAGCAGAA AAAGAGAA CTTGAAGT chrX:13739501-13739581 8 4.91e-05 GAGATGG AAAGAGAA TAACAGAGTG chrV:20789225-20789305 5 4.91e-05 ACAT AAAGAGAA GAAGAAGACG chrII:10761865-10761945 16 4.91e-05 GGCGCGGAAA AAAGAGAA TGAGATGGGA chrIV:11765757-11765837 8 9.44e-05 GAGAGAG AGAAAGAA GGAAGAAAAC chrIV:13877804-13877884 56 9.44e-05 GAAAAAATGA AAAAAGAG TCCCCTCGTC chrX:12828162-12828242 14 9.44e-05 ACATACGCAA AAAAAGAG CAAGAGCACA chrI:4496524-4496604 50 9.44e-05 GCATGTGACA AGAAAGAA AGGGAGTCAG chrX:15342273-15342353 38 9.44e-05 GGAGAGGGAG AAAAAGAG CTGATGAGGG chrII:5276874-5276954 57 9.44e-05 GAAATGGAGA AAAAAGAG GCAAAAAAAA chrIII:3984277-3984357 5 9.44e-05 TTAG AGAAAGAA GCAAGAAGGA chrV:2135612-2135692 32 1.56e-04 CTACACTGCA AAGAAGAA CTACATGGAC chrX:8017487-8017567 27 1.56e-04 gaagaaggag aagaagaa gCGTGTGTTT chrI:10037751-10037831 23 1.56e-04 GTGTGACACT AGAGAGAA TGGCCAGTGT chrI:9846500-9846580 56 1.56e-04 GGGAATACGA AAGAAGAA GGTTCTTCTT chrI:9373433-9373513 26 1.56e-04 CGAGAAGTAG AAGAAGAA GCGGCACAAT chrIV:7611607-7611687 27 1.56e-04 TTTGAGACGC AGAGAGAA GAGTCGTTGA chrII:10379788-10379868 47 1.56e-04 ATACAACGCC AAAGAGAG ACAGCCTCAC chrX:15386104-15386184 21 1.56e-04 GAGTGATGAG AAAGAGAG GGAGAGAGGG chrI:1807983-1808063 32 1.56e-04 TGTGTTGAAG AAGAAGAA GACGTCACGT chrI:1598534-1598614 34 1.56e-04 GGCTCACATG AGAGAGAA AAAGCTCGCG chrX:13171363-13171443 40 1.56e-04 ACTGCagtag aagaagaa ggaagcaaaa chrV:3717995-3718075 47 1.56e-04 GACGTGCTAG AGAGAGAA TGTGGAGAAG chrX:3116336-3116416 1 1.56e-04 . AGAGAGAA AATGGGCCAA chrIII:764522-764602 5 1.56e-04 gtag aagaagaa gaagaagTCG chrI:9092348-9092428 18 1.56e-04 TTTTGGCTCA AAAGAGAG AGAGAGAGCA chrIII:8394962-8395042 28 1.56e-04 GGAGCTgaag aagaagaa gaagaagctg chrIV:4034971-4035051 56 1.56e-04 AGAGGAGAAG AAGAAGAA GCCTTGGCTC chrV:14930276-14930356 61 1.56e-04 AGCTTTGAAG AAAGAGAG GAAAAGAAGA chrI:9969574-9969654 70 1.56e-04 TTACATAGCA AAAGAGAG ACA chrI:7421469-7421549 19 1.56e-04 GGAGCAGAAG AAGAAGAA AGCACAAGCT chrX:13213601-13213681 8 1.56e-04 CGTGAAG AAGAAGAA CAACAAAAAT chrII:6808658-6808738 61 1.56e-04 AGTTGGGGAA AAGAAGAA GAAGCGGTGG chrI:7515900-7515980 62 1.56e-04 gacaaagaag aagaagaa gaCGTGCTGC chrI:14769097-14769177 64 1.75e-04 ttTGCTCAAA AAGGAGAA GACGTTGAA chrI:9172740-9172820 65 1.95e-04 CCACATCACA AGAAAGAG GAGAAGGC chrIII:6140130-6140210 23 2.18e-04 GAGCGAGATT GAAAAGAA TGCCGTGGTG chrIII:2716481-2716561 8 2.73e-04 gaattgc agagagag acgcagagaT chrI:13547422-13547502 35 2.73e-04 CTCCTTCTAG AGAGAGAG CAGCAGCCAG chrIII:3677437-3677517 72 2.73e-04 GCCATTTGTA AAGAAGAG A chrII:14036956-14037036 27 2.73e-04 ACTAGTAAGA AGGAAGAA GTGCGCGGAG chrIII:6695348-6695428 18 2.73e-04 GCCGGAGAGC AAGAAGAG GAGGAGGAGC chrIV:14260867-14260947 20 2.73e-04 agatagagat agagagag agccaagaga chrX:9997180-9997260 29 2.92e-04 ACGAGAGGGA GAAGAGAA AAATAAGCGA chrV:12038932-12039012 15 3.57e-04 ACATACACTG AGGGAGAA GGGGAGACAC chrIV:11349873-11349953 66 3.57e-04 TGGATGAGTG AAGGAGAG AATAAGG chrIV:10500172-10500252 66 3.57e-04 GGGACAAGCA AAAAAAAA AATTCTC chrV:2131502-2131582 45 3.57e-04 ATTTAAAAAC AAAAAAAA TGTACAAATT chrX:4151225-4151305 51 3.57e-04 TAAACGGCGA AAAAAAAA ACAAATTTGA chrI:9101084-9101164 44 3.57e-04 AAATTAACTC AAAAAAAA AACAAAAGAA chrIV:10478323-10478403 30 3.57e-04 TGTCAGAGGT AAAAAAAA CGAGCGAGGG chrIV:8796393-8796473 9 3.57e-04 gagcatca AAGGAGAG AGTCGAAAAA chrI:12546728-12546808 35 4.22e-04 CTGGCTATGG GAAAAGAG ACGGGGGACA chrX:13210593-13210673 1 4.22e-04 . AAAGAAAA GGGGACAAAA chrX:14636815-14636895 26 4.22e-04 GCAACGGGGG GAAAAGAG CAACGACGAA chrX:3535629-3535709 63 4.22e-04 TGCTTGCTCT AAAGAAAA CAGGATTATT chrIII:2532907-2532987 38 5.14e-04 GAGACGAGAT GAAGAGAG ACGCAGCGTA chrI:4911970-4912050 69 5.14e-04 TGTGTGGGAT GGAGAGAA CGGG chrV:14006988-14007068 52 5.14e-04 CCGCCGCCGC GGAGAGAA TGCGCGGACA chrIV:14272638-14272718 47 5.81e-04 GCTCTCAAAG AGGGAGAG AGTGGACACA chrIV:11785270-11785350 73 5.81e-04 GCGGAGGAGC AAAAAAAG chrIII:3139291-3139371 70 5.81e-04 CGAAAAACAG AGAAAAAA CGA chrII:11751773-11751853 4 6.17e-04 ACG GAGGAGAA GGCGTTTCGA chrI:7371997-7372077 73 6.17e-04 GCAGTATTCT GAGGAGAA chrIV:4210972-4211052 18 7.05e-04 GGGAAAAAAC AGAGAAAA AGGAAACAGT chrI:2681597-2681677 58 7.05e-04 ACGGCTCTCG AGAGAAAA TAGGGAGGAT chrX:3126412-3126492 24 7.05e-04 ACGAAGGCAC AGAGAAAA GCGCTGAAGC chrV:14143808-14143888 22 7.05e-04 gaggaaaacg aagaaaaa taagaagGAC chrIII:12472649-12472729 49 8.14e-04 CCTTTTTAAG GGGAAGAA AATCGATAGT chrV:2133670-2133750 53 8.14e-04 GACCCCTCGC GGAGAGAG CAAGTCACAT chrIV:6393432-6393512 47 8.14e-04 TTTGgatgat gagaagag gatcatgatg chrX:4786061-4786141 66 8.14e-04 GACACATACT CAAAAGAG CATCTGC chrII:5725276-5725356 1 8.14e-04 . GGAGAGAG ATAGAAACGC chrX:1529196-1529276 40 8.14e-04 GACGGTGTGA GGGAAGAA CGTCTTGAGG chrIV:3135161-3135241 45 8.14e-04 ctgcATCGAC GAGAAGAG TGAGcacata chrII:5341023-5341103 11 8.14e-04 CAAAACGAAA AAGGAAAA AAATCTGGTA chrIV:5960108-5960188 27 8.14e-04 TCTTGTGGAC CGAAAGAA GTGATTAGAA chrI:7087748-7087828 44 8.14e-04 GCCAACGGTT CAAAAGAG CACATACACT chrI:14346738-14346818 47 8.37e-04 TTAATGCGGG AGAAAAAG GCGCGGCGCC chrII:7327146-7327226 1 9.45e-04 . CGAGAGAA GCTTGGCGAC chrIII:5845623-5845703 56 9.45e-04 actgagatga cgaGAGAA ATTGAAAGAC chrI:1691480-1691560 8 9.45e-04 CCGTTCG CGAGAGAA CCTATGAGCA chrIII:5999799-5999879 66 9.45e-04 ATTTTAAAAA CGAGAGAA TAGAGTC chrV:12819352-12819432 48 9.45e-04 ACTGACAGAG CAGAAGAA GACGTCGTTT chrV:6658900-6658980 60 1.01e-03 GGTGGAAACG AGAGAAAG CAAGGCACAT chrII:759902-759982 73 1.05e-03 GGGCTTTTCG Gaagaaaa chrX:7689728-7689808 54 1.05e-03 GTTTAACGCC GAAGAAAA TAGGAGGACG chrI:10772440-10772520 6 1.12e-03 CTTGC GGGAAGAG CTCTTGCAAC chrIII:13698018-13698098 3 1.12e-03 AA CGAAAGAG ACGCAGAGTA chrV:965080-965160 73 1.22e-03 TTAATTTGAC GGAAAAAA chrX:7222581-7222661 64 1.22e-03 GCAAGCGCGT GGAAAAAA GGGACCAAG chrIII:4656568-4656648 4 1.22e-03 ACG GGGGAGAG TCAGGCGGCT chrIII:67317-67397 38 1.36e-03 GATGAGGGAG CAGGAGAG TTGCATTTTG chrI:9167291-9167371 37 1.36e-03 TCGTCACATT GAAGAAAG ATGGACGATG chrX:15193200-15193280 9 1.36e-03 CGGCTCAG GAGAAAAA CGCAGTCAAA chrIII:8873366-8873446 26 1.44e-03 CGACGTTGTC CAAGAAAA CGGGGAAGCA chrX:17466846-17466926 50 1.65e-03 AAAATTGCCG AAAAAGGG TTAAGAATCA chrI:13025848-13025928 10 1.65e-03 CGTTCTCTT AAAAAGGG AGGAGCAGTT chrIII:6348779-6348859 69 1.79e-03 GGAAGCATTG AAGAAGGA ATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAGAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:7412950-7413030 2.6e-05 60_[+2]_12 chrIII:11201197-11201277 2.6e-05 34_[+2]_38 chrI:7951896-7951976 2.6e-05 65_[+2]_7 chrI:7954862-7954942 2.6e-05 19_[+2]_53 chrIV:6809967-6810047 2.6e-05 37_[+2]_35 chrV:2138483-2138563 2.6e-05 27_[+2]_45 chrII:6709150-6709230 2.6e-05 27_[+2]_45 chrIV:5951060-5951140 2.6e-05 12_[+2]_60 chrIV:7663150-7663230 2.6e-05 52_[+2]_20 chrX:1522157-1522237 2.6e-05 71_[+2]_1 chrI:10031781-10031861 2.6e-05 30_[+2]_42 chrX:5820138-5820218 2.6e-05 35_[+2]_37 chrI:10030114-10030194 2.6e-05 29_[+2]_43 chrIV:6061120-6061200 2.6e-05 13_[+2]_59 chrX:3111188-3111268 2.6e-05 23_[+2]_49 chrI:4900949-4901029 4.9e-05 30_[+2]_42 chrII:7634221-7634301 4.9e-05 64_[+2]_8 chrX:13739501-13739581 4.9e-05 7_[+2]_65 chrV:20789225-20789305 4.9e-05 4_[+2]_68 chrII:10761865-10761945 4.9e-05 15_[+2]_57 chrIV:11765757-11765837 9.4e-05 7_[+2]_65 chrIV:13877804-13877884 9.4e-05 55_[+2]_17 chrX:12828162-12828242 9.4e-05 13_[+2]_59 chrI:4496524-4496604 9.4e-05 49_[+2]_23 chrX:15342273-15342353 9.4e-05 37_[+2]_35 chrII:5276874-5276954 9.4e-05 56_[+2]_16 chrIII:3984277-3984357 9.4e-05 4_[+2]_68 chrV:2135612-2135692 0.00016 31_[+2]_41 chrX:8017487-8017567 0.00016 26_[+2]_46 chrI:10037751-10037831 0.00016 22_[+2]_50 chrI:9846500-9846580 0.00016 55_[+2]_17 chrI:9373433-9373513 0.00016 25_[+2]_47 chrIV:7611607-7611687 0.00016 26_[+2]_46 chrII:10379788-10379868 0.00016 46_[+2]_26 chrX:15386104-15386184 0.00016 20_[+2]_52 chrI:1807983-1808063 0.00016 31_[+2]_41 chrI:1598534-1598614 0.00016 33_[+2]_39 chrX:13171363-13171443 0.00016 39_[+2]_33 chrV:3717995-3718075 0.00016 46_[+2]_26 chrX:3116336-3116416 0.00016 [+2]_72 chrIII:764522-764602 0.00016 4_[+2]_68 chrI:9092348-9092428 0.00016 17_[+2]_55 chrIII:8394962-8395042 0.00016 27_[+2]_45 chrIV:4034971-4035051 0.00016 55_[+2]_17 chrV:14930276-14930356 0.00016 60_[+2]_12 chrI:9969574-9969654 0.00016 69_[+2]_3 chrI:7421469-7421549 0.00016 18_[+2]_54 chrX:13213601-13213681 0.00016 7_[+2]_65 chrII:6808658-6808738 0.00016 60_[+2]_12 chrI:7515900-7515980 0.00016 61_[+2]_11 chrI:14769097-14769177 0.00018 63_[+2]_9 chrI:9172740-9172820 0.00019 64_[+2]_8 chrIII:6140130-6140210 0.00022 22_[+2]_50 chrIII:2716481-2716561 0.00027 7_[+2]_65 chrI:13547422-13547502 0.00027 34_[+2]_38 chrIII:3677437-3677517 0.00027 71_[+2]_1 chrII:14036956-14037036 0.00027 26_[+2]_46 chrIII:6695348-6695428 0.00027 17_[+2]_55 chrIV:14260867-14260947 0.00027 19_[+2]_53 chrX:9997180-9997260 0.00029 28_[+2]_44 chrV:12038932-12039012 0.00036 14_[+2]_58 chrIV:11349873-11349953 0.00036 65_[+2]_7 chrIV:10500172-10500252 0.00036 65_[+2]_7 chrV:2131502-2131582 0.00036 44_[+2]_28 chrX:4151225-4151305 0.00036 50_[+2]_22 chrI:9101084-9101164 0.00036 43_[+2]_29 chrIV:10478323-10478403 0.00036 29_[+2]_43 chrIV:8796393-8796473 0.00036 8_[+2]_64 chrI:12546728-12546808 0.00042 34_[+2]_38 chrX:13210593-13210673 0.00042 [+2]_72 chrX:14636815-14636895 0.00042 25_[+2]_47 chrX:3535629-3535709 0.00042 62_[+2]_10 chrIII:2532907-2532987 0.00051 37_[+2]_35 chrI:4911970-4912050 0.00051 68_[+2]_4 chrV:14006988-14007068 0.00051 51_[+2]_21 chrIV:14272638-14272718 0.00058 46_[+2]_26 chrIV:11785270-11785350 0.00058 72_[+2] chrIII:3139291-3139371 0.00058 69_[+2]_3 chrII:11751773-11751853 0.00062 3_[+2]_69 chrI:7371997-7372077 0.00062 72_[+2] chrIV:4210972-4211052 0.00071 17_[+2]_55 chrI:2681597-2681677 0.00071 57_[+2]_15 chrX:3126412-3126492 0.00071 23_[+2]_49 chrV:14143808-14143888 0.00071 21_[+2]_51 chrIII:12472649-12472729 0.00081 48_[+2]_24 chrV:2133670-2133750 0.00081 52_[+2]_20 chrIV:6393432-6393512 0.00081 46_[+2]_26 chrX:4786061-4786141 0.00081 65_[+2]_7 chrII:5725276-5725356 0.00081 [+2]_72 chrX:1529196-1529276 0.00081 39_[+2]_33 chrIV:3135161-3135241 0.00081 44_[+2]_28 chrII:5341023-5341103 0.00081 10_[+2]_62 chrIV:5960108-5960188 0.00081 26_[+2]_46 chrI:7087748-7087828 0.00081 43_[+2]_29 chrI:14346738-14346818 0.00084 46_[+2]_26 chrII:7327146-7327226 0.00094 [+2]_72 chrIII:5845623-5845703 0.00094 55_[+2]_17 chrI:1691480-1691560 0.00094 7_[+2]_65 chrIII:5999799-5999879 0.00094 65_[+2]_7 chrV:12819352-12819432 0.00094 47_[+2]_25 chrV:6658900-6658980 0.001 59_[+2]_13 chrII:759902-759982 0.001 72_[+2] chrX:7689728-7689808 0.001 53_[+2]_19 chrI:10772440-10772520 0.0011 5_[+2]_67 chrIII:13698018-13698098 0.0011 2_[+2]_70 chrV:965080-965160 0.0012 72_[+2] chrX:7222581-7222661 0.0012 63_[+2]_9 chrIII:4656568-4656648 0.0012 3_[+2]_69 chrIII:67317-67397 0.0014 37_[+2]_35 chrI:9167291-9167371 0.0014 36_[+2]_36 chrX:15193200-15193280 0.0014 8_[+2]_64 chrIII:8873366-8873446 0.0014 25_[+2]_47 chrX:17466846-17466926 0.0016 49_[+2]_23 chrI:13025848-13025928 0.0016 9_[+2]_63 chrIII:6348779-6348859 0.0018 68_[+2]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAGAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAARAGAA width=8 seqs=115 chrI:7412950-7413030 ( 61) AAAAAGAA 1 chrIII:11201197-11201277 ( 35) AAAAAGAA 1 chrI:7951896-7951976 ( 66) AAAAAGAA 1 chrI:7954862-7954942 ( 20) AAAAAGAA 1 chrIV:6809967-6810047 ( 38) AAAAAGAA 1 chrV:2138483-2138563 ( 28) AAAAAGAA 1 chrII:6709150-6709230 ( 28) AAAAAGAA 1 chrIV:5951060-5951140 ( 13) AAAAAGAA 1 chrIV:7663150-7663230 ( 53) AAAAAGAA 1 chrX:1522157-1522237 ( 72) AAAAAGAA 1 chrI:10031781-10031861 ( 31) AAAAAGAA 1 chrX:5820138-5820218 ( 36) AAAAAGAA 1 chrI:10030114-10030194 ( 30) AAAAAGAA 1 chrIV:6061120-6061200 ( 14) AAAAAGAA 1 chrX:3111188-3111268 ( 24) AAAAAGAA 1 chrI:4900949-4901029 ( 31) AAAGAGAA 1 chrII:7634221-7634301 ( 65) AAAGAGAA 1 chrX:13739501-13739581 ( 8) AAAGAGAA 1 chrV:20789225-20789305 ( 5) AAAGAGAA 1 chrII:10761865-10761945 ( 16) AAAGAGAA 1 chrIV:11765757-11765837 ( 8) AGAAAGAA 1 chrIV:13877804-13877884 ( 56) AAAAAGAG 1 chrX:12828162-12828242 ( 14) AAAAAGAG 1 chrI:4496524-4496604 ( 50) AGAAAGAA 1 chrX:15342273-15342353 ( 38) AAAAAGAG 1 chrII:5276874-5276954 ( 57) AAAAAGAG 1 chrIII:3984277-3984357 ( 5) AGAAAGAA 1 chrV:2135612-2135692 ( 32) AAGAAGAA 1 chrX:8017487-8017567 ( 27) AAGAAGAA 1 chrI:10037751-10037831 ( 23) AGAGAGAA 1 chrI:9846500-9846580 ( 56) AAGAAGAA 1 chrI:9373433-9373513 ( 26) AAGAAGAA 1 chrIV:7611607-7611687 ( 27) AGAGAGAA 1 chrII:10379788-10379868 ( 47) AAAGAGAG 1 chrX:15386104-15386184 ( 21) AAAGAGAG 1 chrI:1807983-1808063 ( 32) AAGAAGAA 1 chrI:1598534-1598614 ( 34) AGAGAGAA 1 chrX:13171363-13171443 ( 40) AAGAAGAA 1 chrV:3717995-3718075 ( 47) AGAGAGAA 1 chrX:3116336-3116416 ( 1) AGAGAGAA 1 chrIII:764522-764602 ( 5) AAGAAGAA 1 chrI:9092348-9092428 ( 18) AAAGAGAG 1 chrIII:8394962-8395042 ( 28) AAGAAGAA 1 chrIV:4034971-4035051 ( 56) AAGAAGAA 1 chrV:14930276-14930356 ( 61) AAAGAGAG 1 chrI:9969574-9969654 ( 70) AAAGAGAG 1 chrI:7421469-7421549 ( 19) AAGAAGAA 1 chrX:13213601-13213681 ( 8) AAGAAGAA 1 chrII:6808658-6808738 ( 61) AAGAAGAA 1 chrI:7515900-7515980 ( 62) AAGAAGAA 1 chrI:14769097-14769177 ( 64) AAGGAGAA 1 chrI:9172740-9172820 ( 65) AGAAAGAG 1 chrIII:6140130-6140210 ( 23) GAAAAGAA 1 chrIII:2716481-2716561 ( 8) AGAGAGAG 1 chrI:13547422-13547502 ( 35) AGAGAGAG 1 chrIII:3677437-3677517 ( 72) AAGAAGAG 1 chrII:14036956-14037036 ( 27) AGGAAGAA 1 chrIII:6695348-6695428 ( 18) AAGAAGAG 1 chrIV:14260867-14260947 ( 20) AGAGAGAG 1 chrX:9997180-9997260 ( 29) GAAGAGAA 1 chrV:12038932-12039012 ( 15) AGGGAGAA 1 chrIV:11349873-11349953 ( 66) AAGGAGAG 1 chrIV:10500172-10500252 ( 66) AAAAAAAA 1 chrV:2131502-2131582 ( 45) AAAAAAAA 1 chrX:4151225-4151305 ( 51) AAAAAAAA 1 chrI:9101084-9101164 ( 44) AAAAAAAA 1 chrIV:10478323-10478403 ( 30) AAAAAAAA 1 chrIV:8796393-8796473 ( 9) AAGGAGAG 1 chrI:12546728-12546808 ( 35) GAAAAGAG 1 chrX:13210593-13210673 ( 1) AAAGAAAA 1 chrX:14636815-14636895 ( 26) GAAAAGAG 1 chrX:3535629-3535709 ( 63) AAAGAAAA 1 chrIII:2532907-2532987 ( 38) GAAGAGAG 1 chrI:4911970-4912050 ( 69) GGAGAGAA 1 chrV:14006988-14007068 ( 52) GGAGAGAA 1 chrIV:14272638-14272718 ( 47) AGGGAGAG 1 chrIV:11785270-11785350 ( 73) AAAAAAAG 1 chrIII:3139291-3139371 ( 70) AGAAAAAA 1 chrII:11751773-11751853 ( 4) GAGGAGAA 1 chrI:7371997-7372077 ( 73) GAGGAGAA 1 chrIV:4210972-4211052 ( 18) AGAGAAAA 1 chrI:2681597-2681677 ( 58) AGAGAAAA 1 chrX:3126412-3126492 ( 24) AGAGAAAA 1 chrV:14143808-14143888 ( 22) AAGAAAAA 1 chrIII:12472649-12472729 ( 49) GGGAAGAA 1 chrV:2133670-2133750 ( 53) GGAGAGAG 1 chrIV:6393432-6393512 ( 47) GAGAAGAG 1 chrX:4786061-4786141 ( 66) CAAAAGAG 1 chrII:5725276-5725356 ( 1) GGAGAGAG 1 chrX:1529196-1529276 ( 40) GGGAAGAA 1 chrIV:3135161-3135241 ( 45) GAGAAGAG 1 chrII:5341023-5341103 ( 11) AAGGAAAA 1 chrIV:5960108-5960188 ( 27) CGAAAGAA 1 chrI:7087748-7087828 ( 44) CAAAAGAG 1 chrI:14346738-14346818 ( 47) AGAAAAAG 1 chrII:7327146-7327226 ( 1) CGAGAGAA 1 chrIII:5845623-5845703 ( 56) CGAGAGAA 1 chrI:1691480-1691560 ( 8) CGAGAGAA 1 chrIII:5999799-5999879 ( 66) CGAGAGAA 1 chrV:12819352-12819432 ( 48) CAGAAGAA 1 chrV:6658900-6658980 ( 60) AGAGAAAG 1 chrII:759902-759982 ( 73) GAAGAAAA 1 chrX:7689728-7689808 ( 54) GAAGAAAA 1 chrI:10772440-10772520 ( 6) GGGAAGAG 1 chrIII:13698018-13698098 ( 3) CGAAAGAG 1 chrV:965080-965160 ( 73) GGAAAAAA 1 chrX:7222581-7222661 ( 64) GGAAAAAA 1 chrIII:4656568-4656648 ( 4) GGGGAGAG 1 chrIII:67317-67397 ( 38) CAGGAGAG 1 chrI:9167291-9167371 ( 37) GAAGAAAG 1 chrX:15193200-15193280 ( 9) GAGAAAAA 1 chrIII:8873366-8873446 ( 26) CAAGAAAA 1 chrX:17466846-17466926 ( 50) AAAAAGGG 1 chrI:13025848-13025928 ( 10) AAAAAGGG 1 chrIII:6348779-6348859 ( 69) AAGAAGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAGAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.54888 E= 2.9e-029 137 -128 -22 -1349 131 -1349 46 -1349 135 -1349 38 -1349 109 -1349 84 -1349 187 -1349 -1349 -1349 -45 -1349 178 -1349 183 -1349 -316 -1349 131 -1349 46 -1349 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAGAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 115 E= 2.9e-029 0.704348 0.095652 0.200000 0.000000 0.678261 0.000000 0.321739 0.000000 0.695652 0.000000 0.304348 0.000000 0.582609 0.000000 0.417391 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.973913 0.000000 0.026087 0.000000 0.678261 0.000000 0.321739 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAGAA MEME-2 regular expression -------------------------------------------------------------------------------- [AG][AG][AG][AG]A[GA]A[AG] -------------------------------------------------------------------------------- Time 14.59 secs. ******************************************************************************** ******************************************************************************** MOTIF WCGTCKCC MEME-3 width = 8 sites = 24 llr = 221 E-value = 2.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif WCGTCKCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3::::::: pos.-specific C 1a::a2aa probability G 2:a::5:: matrix T 5::a:3:: bits 2.1 ** * ** 1.9 **** ** 1.7 **** ** 1.5 **** ** Relative 1.3 **** ** Entropy 1.1 **** ** (13.3 bits) 0.8 **** ** 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TCGTCGCC consensus A T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCGTCKCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:6820485-6820565 52 1.09e-05 TTATGAGTCG TCGTCGCC Gcttcctcct chrIV:12771551-12771631 67 1.09e-05 CAGCGTGATG TCGTCGCC GCCGGC chrV:10722025-10722105 26 1.09e-05 AAAAGCAGCG TCGTCGCC ACGTTGAACT chrX:15395816-15395896 20 1.09e-05 gtcgtcgtcg tcgtcgCC TTCACTGATG chrI:6398183-6398263 50 1.09e-05 CCTTCGGAGC TCGTCGCC GCCGCCGGGG chrIV:4034971-4035051 72 1.09e-05 AAGCCTTGGC TCGTCGCC A chrIII:8873366-8873446 53 3.22e-05 AATTCCCTCG ACGTCGCC CCTTGCCCAA chrI:7955062-7955142 13 3.22e-05 TCACTTTTTG ACGTCGCC TCTTCGTTTT chrX:14640061-14640141 22 3.22e-05 TGCTTTCTTC GCGTCGCC GTCCTTCTCT chrX:3116336-3116416 71 3.22e-05 GGAGATGCCG ACGTCGCC GA chrIII:11203144-11203224 15 3.22e-05 ACTTCTATCG ACGTCGCC GCCGCCGCGG chrI:7515900-7515980 5 3.22e-05 ttcC GCGTCGCC TCGCCTTGAA chrIV:4007786-4007866 49 4.43e-05 GTTTCTCACG TCGTCTCC GCCCCTTCTC chrI:3292844-3292924 50 5.52e-05 GAACCTGTAC TCGTCCCC ATACAAAGTT chrIII:4656568-4656648 40 5.52e-05 TTTGAAGTCG TCGTCCCC AACGTCCAAA chrIII:10151891-10151971 43 5.52e-05 CATCTTTTCC TCGTCCCC ACCCTCCTCT chrI:7087748-7087828 11 5.52e-05 CGGTGGCAGG TCGTCCCC AAAGCATTGG chrIII:8973282-8973362 19 7.88e-05 CTTCTCTTTC ACGTCTCC TTTTTCAGAT chrV:20879445-20879525 56 7.88e-05 CATGTTTTCT GCGTCTCC AACCTATTTC chrIII:11204950-11205030 64 7.88e-05 TCGCCTATCT GCGTCTCC GTGCTCCCA chrII:2962692-2962772 35 7.88e-05 TAGGCCGTCT GCGTCTCC GGTGTCGTCA chrV:4238274-4238354 5 7.88e-05 AAGC ACGTCTCC GGAAATATTA chrI:7954862-7954942 45 8.86e-05 GTGCTCGCGC CCGTCGCC GTCGTTGGCC chrI:7421469-7421549 47 1.21e-04 CATCCAGTCG CCGTCTCC ACACTCTCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCGTCKCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6820485-6820565 1.1e-05 51_[+3]_21 chrIV:12771551-12771631 1.1e-05 66_[+3]_6 chrV:10722025-10722105 1.1e-05 25_[+3]_47 chrX:15395816-15395896 1.1e-05 19_[+3]_53 chrI:6398183-6398263 1.1e-05 49_[+3]_23 chrIV:4034971-4035051 1.1e-05 71_[+3]_1 chrIII:8873366-8873446 3.2e-05 52_[+3]_20 chrI:7955062-7955142 3.2e-05 12_[+3]_60 chrX:14640061-14640141 3.2e-05 21_[+3]_51 chrX:3116336-3116416 3.2e-05 70_[+3]_2 chrIII:11203144-11203224 3.2e-05 14_[+3]_58 chrI:7515900-7515980 3.2e-05 4_[+3]_68 chrIV:4007786-4007866 4.4e-05 48_[+3]_24 chrI:3292844-3292924 5.5e-05 49_[+3]_23 chrIII:4656568-4656648 5.5e-05 39_[+3]_33 chrIII:10151891-10151971 5.5e-05 42_[+3]_30 chrI:7087748-7087828 5.5e-05 10_[+3]_62 chrIII:8973282-8973362 7.9e-05 18_[+3]_54 chrV:20879445-20879525 7.9e-05 55_[+3]_17 chrIII:11204950-11205030 7.9e-05 63_[+3]_9 chrII:2962692-2962772 7.9e-05 34_[+3]_38 chrV:4238274-4238354 7.9e-05 4_[+3]_68 chrI:7954862-7954942 8.9e-05 44_[+3]_28 chrI:7421469-7421549 0.00012 46_[+3]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCGTCKCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WCGTCKCC width=8 seqs=24 chrII:6820485-6820565 ( 52) TCGTCGCC 1 chrIV:12771551-12771631 ( 67) TCGTCGCC 1 chrV:10722025-10722105 ( 26) TCGTCGCC 1 chrX:15395816-15395896 ( 20) TCGTCGCC 1 chrI:6398183-6398263 ( 50) TCGTCGCC 1 chrIV:4034971-4035051 ( 72) TCGTCGCC 1 chrIII:8873366-8873446 ( 53) ACGTCGCC 1 chrI:7955062-7955142 ( 13) ACGTCGCC 1 chrX:14640061-14640141 ( 22) GCGTCGCC 1 chrX:3116336-3116416 ( 71) ACGTCGCC 1 chrIII:11203144-11203224 ( 15) ACGTCGCC 1 chrI:7515900-7515980 ( 5) GCGTCGCC 1 chrIV:4007786-4007866 ( 49) TCGTCTCC 1 chrI:3292844-3292924 ( 50) TCGTCCCC 1 chrIII:4656568-4656648 ( 40) TCGTCCCC 1 chrIII:10151891-10151971 ( 43) TCGTCCCC 1 chrI:7087748-7087828 ( 11) TCGTCCCC 1 chrIII:8973282-8973362 ( 19) ACGTCTCC 1 chrV:20879445-20879525 ( 56) GCGTCTCC 1 chrIII:11204950-11205030 ( 64) GCGTCTCC 1 chrII:2962692-2962772 ( 35) GCGTCTCC 1 chrV:4238274-4238354 ( 5) ACGTCTCC 1 chrI:7954862-7954942 ( 45) CCGTCGCC 1 chrI:7421469-7421549 ( 47) CCGTCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCGTCKCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.155 E= 2.5e-004 -13 -148 -17 81 -1123 210 -1123 -1123 -1123 -1123 210 -1123 -1123 -1123 -1123 194 -1123 210 -1123 -1123 -1123 -48 121 16 -1123 210 -1123 -1123 -1123 210 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCGTCKCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.5e-004 0.250000 0.083333 0.208333 0.458333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.541667 0.291667 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCGTCKCC MEME-3 regular expression -------------------------------------------------------------------------------- [TAG]CGTC[GT]CC -------------------------------------------------------------------------------- Time 18.07 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAMGMAG MEME-4 width = 8 sites = 33 llr = 276 E-value = 1.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAMGMAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A a284:4a: pos.-specific C :::5:6:: probability G :821a::a matrix T :::::::: bits 2.1 * * 1.9 * ** 1.7 * * ** 1.5 * * ** Relative 1.3 *** * ** Entropy 1.1 *** **** (12.1 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGACGCAG consensus A A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAMGMAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:6809967-6810047 18 1.42e-05 AAGCCTAAAT AGACGCAG GCAGTAAAAG chrV:16351128-16351208 12 1.42e-05 AGTGATGGAG AGACGCAG AGAGCTTCTG chrX:6128428-6128508 42 1.42e-05 TCGCTTGCGG AGACGCAG CCCGCCGATG chrX:1529196-1529276 23 1.42e-05 CCGCGTGAAG AGACGCAG ACGGTGTGAG chrX:3049395-3049475 60 1.42e-05 ACTGTTGTGG AGACGCAG GGCGCGAGGC chrI:1807983-1808063 55 1.42e-05 CACGTAGGCT AGACGCAG AGAAACAGGC chrIII:1792089-1792169 17 1.42e-05 CAAAAAACGG AGACGCAG AGCACCAGCA chrIV:14260867-14260947 35 1.42e-05 gagagccaag agacgcag agaaacagag chrIV:5960108-5960188 50 1.42e-05 TAGAATGGTG AGACGCAG ACACGTTTGC chrI:7951896-7951976 51 3.07e-05 aaaaagaaga agaagcag aagaagaaaa chrV:12026951-12027031 19 3.07e-05 CTTCAGTAGC AGAAGCAG GAGCAAAAGC chrV:3717995-3718075 60 3.07e-05 GAGAATGTGG AGAAGCAG TGCAGAGTGA chrIII:8392534-8392614 58 4.73e-05 TTGTGAGAGG AGACGAAG AGTTATTTTT chrIII:8394962-8395042 61 4.73e-05 aagaataaga agacgaag aTGCTCATTT chrX:13502446-13502526 34 4.73e-05 GTGGGAGTGA AGACGAAG AAGGCTTGGG chrX:8017487-8017567 13 6.67e-05 gaagagtagg agaagaag aaggagaaga chrX:1522157-1522237 64 6.67e-05 AGCTCCCAAG AGAAGAAG AAAAAGAAG chrX:8806478-8806558 70 9.54e-05 CAGAGAGGGG AGGCGCAG ACA chrX:1062859-1062939 61 1.10e-04 AAAAGCTGAG AGAGGCAG AATAGAAAAT chrIV:11495155-11495235 12 1.10e-04 GTAGAGACAC AGAGGCAG GGACCCTGGA chrX:11473393-11473473 10 1.29e-04 GGAGCGCGC AAAAGCAG TCGGGGGCAA chrV:10722025-10722105 16 1.29e-04 AAAATCCATC AAAAGCAG CGTCGTCGCC chrIII:13724450-13724530 1 1.63e-04 . AAACGAAG CATATTACGG chrIII:6695348-6695428 30 1.63e-04 GAAGAGGAGG AGGAGCAG TAGCACGTCT chrI:13025848-13025928 18 1.63e-04 TTAAAAAGGG AGGAGCAG TTTGCAACTC chrX:7284817-7284897 4 1.63e-04 aag aaacgaag CTCGCGCTCT chrX:3126412-3126492 12 1.63e-04 GCGTTTCTCG AAACGAAG GCACAGAGAA chrX:15634081-15634161 2 1.93e-04 G AGAGGAAG ACGTCACTTT chrX:13171363-13171443 54 2.16e-04 agaaggaagc aaaagaag aCATGGGTGT chrV:14930276-14930356 70 2.16e-04 GAAAGAGAGG AAAAGAAG ACG chrX:5820138-5820218 25 2.33e-04 CACAAGAGAT AGGAGAAG CAAAAAAAGA chrIV:4034971-4035051 48 2.33e-04 AGAGAAAGAG AGGAGAAG AAGAAGAAGC chrV:9974371-9974451 36 2.88e-04 CCCCTTCTCT CGACGCAG GCTCAGCAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAMGMAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:6809967-6810047 1.4e-05 17_[+4]_55 chrV:16351128-16351208 1.4e-05 11_[+4]_61 chrX:6128428-6128508 1.4e-05 41_[+4]_31 chrX:1529196-1529276 1.4e-05 22_[+4]_50 chrX:3049395-3049475 1.4e-05 59_[+4]_13 chrI:1807983-1808063 1.4e-05 54_[+4]_18 chrIII:1792089-1792169 1.4e-05 16_[+4]_56 chrIV:14260867-14260947 1.4e-05 34_[+4]_38 chrIV:5960108-5960188 1.4e-05 49_[+4]_23 chrI:7951896-7951976 3.1e-05 50_[+4]_22 chrV:12026951-12027031 3.1e-05 18_[+4]_54 chrV:3717995-3718075 3.1e-05 59_[+4]_13 chrIII:8392534-8392614 4.7e-05 57_[+4]_15 chrIII:8394962-8395042 4.7e-05 60_[+4]_12 chrX:13502446-13502526 4.7e-05 33_[+4]_39 chrX:8017487-8017567 6.7e-05 12_[+4]_60 chrX:1522157-1522237 6.7e-05 63_[+4]_9 chrX:8806478-8806558 9.5e-05 69_[+4]_3 chrX:1062859-1062939 0.00011 60_[+4]_12 chrIV:11495155-11495235 0.00011 11_[+4]_61 chrX:11473393-11473473 0.00013 9_[+4]_63 chrV:10722025-10722105 0.00013 15_[+4]_57 chrIII:13724450-13724530 0.00016 [+4]_72 chrIII:6695348-6695428 0.00016 29_[+4]_43 chrI:13025848-13025928 0.00016 17_[+4]_55 chrX:7284817-7284897 0.00016 3_[+4]_69 chrX:3126412-3126492 0.00016 11_[+4]_61 chrX:15634081-15634161 0.00019 1_[+4]_71 chrX:13171363-13171443 0.00022 53_[+4]_19 chrV:14930276-14930356 0.00022 69_[+4]_3 chrX:5820138-5820218 0.00023 24_[+4]_48 chrIV:4034971-4035051 0.00023 47_[+4]_25 chrV:9974371-9974451 0.00029 35_[+4]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAMGMAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAMGMAG width=8 seqs=33 chrIV:6809967-6810047 ( 18) AGACGCAG 1 chrV:16351128-16351208 ( 12) AGACGCAG 1 chrX:6128428-6128508 ( 42) AGACGCAG 1 chrX:1529196-1529276 ( 23) AGACGCAG 1 chrX:3049395-3049475 ( 60) AGACGCAG 1 chrI:1807983-1808063 ( 55) AGACGCAG 1 chrIII:1792089-1792169 ( 17) AGACGCAG 1 chrIV:14260867-14260947 ( 35) AGACGCAG 1 chrIV:5960108-5960188 ( 50) AGACGCAG 1 chrI:7951896-7951976 ( 51) AGAAGCAG 1 chrV:12026951-12027031 ( 19) AGAAGCAG 1 chrV:3717995-3718075 ( 60) AGAAGCAG 1 chrIII:8392534-8392614 ( 58) AGACGAAG 1 chrIII:8394962-8395042 ( 61) AGACGAAG 1 chrX:13502446-13502526 ( 34) AGACGAAG 1 chrX:8017487-8017567 ( 13) AGAAGAAG 1 chrX:1522157-1522237 ( 64) AGAAGAAG 1 chrX:8806478-8806558 ( 70) AGGCGCAG 1 chrX:1062859-1062939 ( 61) AGAGGCAG 1 chrIV:11495155-11495235 ( 12) AGAGGCAG 1 chrX:11473393-11473473 ( 10) AAAAGCAG 1 chrV:10722025-10722105 ( 16) AAAAGCAG 1 chrIII:13724450-13724530 ( 1) AAACGAAG 1 chrIII:6695348-6695428 ( 30) AGGAGCAG 1 chrI:13025848-13025928 ( 18) AGGAGCAG 1 chrX:7284817-7284897 ( 4) AAACGAAG 1 chrX:3126412-3126492 ( 12) AAACGAAG 1 chrX:15634081-15634161 ( 2) AGAGGAAG 1 chrX:13171363-13171443 ( 54) AAAAGAAG 1 chrV:14930276-14930356 ( 70) AAAAGAAG 1 chrX:5820138-5820218 ( 25) AGGAGAAG 1 chrIV:4034971-4035051 ( 48) AGGAGAAG 1 chrV:9974371-9974451 ( 36) CGACGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAMGMAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4541 E= 1.1e+000 183 -294 -1169 -1169 -36 -1169 175 -1169 164 -1169 -62 -1169 53 115 -136 -1169 -1169 -1169 210 -1169 53 138 -1169 -1169 187 -1169 -1169 -1169 -1169 -1169 210 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAMGMAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.1e+000 0.969697 0.030303 0.000000 0.000000 0.212121 0.000000 0.787879 0.000000 0.848485 0.000000 0.151515 0.000000 0.393939 0.515152 0.090909 0.000000 0.000000 0.000000 1.000000 0.000000 0.393939 0.606061 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAMGMAG MEME-4 regular expression -------------------------------------------------------------------------------- A[GA]A[CA]G[CA]AG -------------------------------------------------------------------------------- Time 21.49 secs. ******************************************************************************** ******************************************************************************** MOTIF TKYKBCTC MEME-5 width = 8 sites = 42 llr = 340 E-value = 4.0e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKYKBCTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::5:2a:a probability G :6:45::: matrix T a4563:a: bits 2.1 * * 1.9 * *** 1.7 * *** 1.5 * *** Relative 1.3 * *** Entropy 1.1 **** *** (11.7 bits) 0.8 **** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTTGCTC consensus TCGT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYKBCTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:20879445-20879525 2 2.58e-05 C TGCTGCTC CCCCTTTTTA chrIII:880275-880355 47 2.58e-05 TTCAAATAAG TGTTGCTC GCGATCAAGC chrIV:3135161-3135241 5 2.58e-05 cttg tgctgctc ttagctccct chrI:13025848-13025928 36 2.58e-05 TTTGCAACTC TGCTGCTC TCCGGCGGAG chrX:5981914-5981994 28 2.58e-05 ttgcctattc tgctgctc ctCGCCTGCT chrX:13739711-13739791 35 2.58e-05 TATGTATGTG TGTTGCTC TCTGCGGTAT chrI:9092348-9092428 48 2.58e-05 ATACTGCTGC TGCTGCTC ACCGAGCACC chrIV:4570674-4570754 66 2.58e-05 TTTTAGCACA TGCTGCTC AAGAAAG chrV:6350230-6350310 58 2.58e-05 TCTTCTCGAC TGCTGCTC GTTTTCGTAT chrIV:10500172-10500252 29 4.89e-05 AGAAACTCTC TGCGGCTC TGCAGCTCAC chrI:12520489-12520569 5 7.76e-05 CATG TTTTGCTC TCATTTCGTG chrX:12629401-12629481 22 7.76e-05 ACTCCACAAA TTTTGCTC TCACTGTGTG chrX:15566764-15566844 12 7.76e-05 CTTCTTCTGC TTTTGCTC TCCCTGTGTG chrV:6655327-6655407 48 7.76e-05 TCTAATGTGC TTTTGCTC GATTGATGTG chrI:6398183-6398263 18 7.76e-05 TTCTGTTTTT TTTTGCTC TGGTACTCCG chrIII:5988163-5988243 9 7.76e-05 ATCATTGA TTCTGCTC GCCGAGCCCT chrI:7412950-7413030 15 1.06e-04 tcgcattctt tgtttctc tctttttctt chrX:11480176-11480256 28 1.06e-04 GTCCTTTCTC TGTTTCTC TTCGTGCTCC chrV:2138483-2138563 60 1.32e-04 GCTTCTTCTA TTTGGCTC AAGGGACCGA chrII:6709150-6709230 5 1.32e-04 CATC TTTGGCTC CGTGAGCCAT chrI:12571890-12571970 13 1.32e-04 CGGGTCCCTC TTTGGCTC ATTGACGTCA chrIV:6809967-6810047 68 1.83e-04 GTCGTTTGTA TGTGTCTC TTCAT chrI:3829804-3829884 71 1.83e-04 GCCCCAAGTC TGCGTCTC GA chrV:10722025-10722105 57 1.83e-04 GACGTTATGG TGCTCCTC TGCGCCAAGA chrIII:668432-668512 68 1.83e-04 tcAGGTTTGC TGCGTCTC AGCGT chrI:11188225-11188305 36 1.83e-04 GTACTTTCTC TGCGTCTC TCATCTTGCA chrX:932951-933031 32 1.83e-04 TACGTGTGTG TGTGTCTC TGTGCTCGGC chrII:759902-759982 45 1.83e-04 CTCTCCCGTC TGCGTCTC GCATATTCCA chrII:6993052-6993132 62 1.83e-04 GTTTCATCTC TGCGTCTC GTTCACCCAT chrIII:4656568-4656648 64 1.83e-04 CAAAATATTC TGCGTCTC GTACGATGA chrII:4456195-4456275 39 1.83e-04 TACTACTCTC TGTGTCTC TTGGAAAACG chrIV:12771551-12771631 9 2.38e-04 TCAGCTTC TGCGCCTC TCCGTTTTTC chrII:5725276-5725356 59 2.38e-04 CTTCTTTCGC TTCTTCTC CCATTTTCTC chrIII:3984277-3984357 29 2.38e-04 AGGAACACCA TGTGCCTC TGGCGCCTGT chrV:10677671-10677751 27 2.38e-04 CTCTCGCCtc ttcttctc cttcttcttc chrV:6893843-6893923 42 2.95e-04 CTCTTTTCTC TTTTCCTC TTTCTTGCGA chrX:14640061-14640141 43 2.95e-04 CTTCTCTCCG TTTTCCTC CCAACTTCCC chrI:10031781-10031861 22 2.95e-04 TTTTCTTTCG TTTTCCTC AAAAAAGAAA chrIII:10151891-10151971 21 2.95e-04 TGTCCCCCCA TTTTCCTC CTTCCATCTT chrIII:8912038-8912118 28 3.21e-04 ATCGCAAGTT TTTGCCTC AGAGTAATAA chrX:13213601-13213681 62 3.21e-04 GTCGATACTT TTCGCCTC AAGCGCTTCG chrX:7678569-7678649 32 3.21e-04 CTCCGCGTGC TTTGCCTC AAACCACCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYKBCTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:20879445-20879525 2.6e-05 1_[+5]_71 chrIII:880275-880355 2.6e-05 46_[+5]_26 chrIV:3135161-3135241 2.6e-05 4_[+5]_68 chrI:13025848-13025928 2.6e-05 35_[+5]_37 chrX:5981914-5981994 2.6e-05 27_[+5]_45 chrX:13739711-13739791 2.6e-05 34_[+5]_38 chrI:9092348-9092428 2.6e-05 47_[+5]_25 chrIV:4570674-4570754 2.6e-05 65_[+5]_7 chrV:6350230-6350310 2.6e-05 57_[+5]_15 chrIV:10500172-10500252 4.9e-05 28_[+5]_44 chrI:12520489-12520569 7.8e-05 4_[+5]_68 chrX:12629401-12629481 7.8e-05 21_[+5]_51 chrX:15566764-15566844 7.8e-05 11_[+5]_61 chrV:6655327-6655407 7.8e-05 47_[+5]_25 chrI:6398183-6398263 7.8e-05 17_[+5]_55 chrIII:5988163-5988243 7.8e-05 8_[+5]_64 chrI:7412950-7413030 0.00011 14_[+5]_58 chrX:11480176-11480256 0.00011 27_[+5]_45 chrV:2138483-2138563 0.00013 59_[+5]_13 chrII:6709150-6709230 0.00013 4_[+5]_68 chrI:12571890-12571970 0.00013 12_[+5]_60 chrIV:6809967-6810047 0.00018 67_[+5]_5 chrI:3829804-3829884 0.00018 70_[+5]_2 chrV:10722025-10722105 0.00018 56_[+5]_16 chrIII:668432-668512 0.00018 67_[+5]_5 chrI:11188225-11188305 0.00018 35_[+5]_37 chrX:932951-933031 0.00018 31_[+5]_41 chrII:759902-759982 0.00018 44_[+5]_28 chrII:6993052-6993132 0.00018 61_[+5]_11 chrIII:4656568-4656648 0.00018 63_[+5]_9 chrII:4456195-4456275 0.00018 38_[+5]_34 chrIV:12771551-12771631 0.00024 8_[+5]_64 chrII:5725276-5725356 0.00024 58_[+5]_14 chrIII:3984277-3984357 0.00024 28_[+5]_44 chrV:10677671-10677751 0.00024 26_[+5]_46 chrV:6893843-6893923 0.0003 41_[+5]_31 chrX:14640061-14640141 0.0003 42_[+5]_30 chrI:10031781-10031861 0.0003 21_[+5]_51 chrIII:10151891-10151971 0.0003 20_[+5]_52 chrIII:8912038-8912118 0.00032 27_[+5]_45 chrX:13213601-13213681 0.00032 61_[+5]_11 chrX:7678569-7678649 0.00032 31_[+5]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYKBCTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKYKBCTC width=8 seqs=42 chrV:20879445-20879525 ( 2) TGCTGCTC 1 chrIII:880275-880355 ( 47) TGTTGCTC 1 chrIV:3135161-3135241 ( 5) TGCTGCTC 1 chrI:13025848-13025928 ( 36) TGCTGCTC 1 chrX:5981914-5981994 ( 28) TGCTGCTC 1 chrX:13739711-13739791 ( 35) TGTTGCTC 1 chrI:9092348-9092428 ( 48) TGCTGCTC 1 chrIV:4570674-4570754 ( 66) TGCTGCTC 1 chrV:6350230-6350310 ( 58) TGCTGCTC 1 chrIV:10500172-10500252 ( 29) TGCGGCTC 1 chrI:12520489-12520569 ( 5) TTTTGCTC 1 chrX:12629401-12629481 ( 22) TTTTGCTC 1 chrX:15566764-15566844 ( 12) TTTTGCTC 1 chrV:6655327-6655407 ( 48) TTTTGCTC 1 chrI:6398183-6398263 ( 18) TTTTGCTC 1 chrIII:5988163-5988243 ( 9) TTCTGCTC 1 chrI:7412950-7413030 ( 15) TGTTTCTC 1 chrX:11480176-11480256 ( 28) TGTTTCTC 1 chrV:2138483-2138563 ( 60) TTTGGCTC 1 chrII:6709150-6709230 ( 5) TTTGGCTC 1 chrI:12571890-12571970 ( 13) TTTGGCTC 1 chrIV:6809967-6810047 ( 68) TGTGTCTC 1 chrI:3829804-3829884 ( 71) TGCGTCTC 1 chrV:10722025-10722105 ( 57) TGCTCCTC 1 chrIII:668432-668512 ( 68) TGCGTCTC 1 chrI:11188225-11188305 ( 36) TGCGTCTC 1 chrX:932951-933031 ( 32) TGTGTCTC 1 chrII:759902-759982 ( 45) TGCGTCTC 1 chrII:6993052-6993132 ( 62) TGCGTCTC 1 chrIII:4656568-4656648 ( 64) TGCGTCTC 1 chrII:4456195-4456275 ( 39) TGTGTCTC 1 chrIV:12771551-12771631 ( 9) TGCGCCTC 1 chrII:5725276-5725356 ( 59) TTCTTCTC 1 chrIII:3984277-3984357 ( 29) TGTGCCTC 1 chrV:10677671-10677751 ( 27) TTCTTCTC 1 chrV:6893843-6893923 ( 42) TTTTCCTC 1 chrX:14640061-14640141 ( 43) TTTTCCTC 1 chrI:10031781-10031861 ( 22) TTTTCCTC 1 chrIII:10151891-10151971 ( 21) TTTTCCTC 1 chrIII:8912038-8912118 ( 28) TTTGCCTC 1 chrX:13213601-13213681 ( 62) TTCGCCTC 1 chrX:7678569-7678649 ( 32) TTTGCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYKBCTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2669 E= 4.0e-004 -1204 -1204 -1204 194 -1204 -1204 129 72 -1204 103 -1204 101 -1204 -1204 87 113 -1204 3 95 25 -1204 210 -1204 -1204 -1204 -1204 -1204 194 -1204 210 -1204 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYKBCTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 4.0e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.571429 0.428571 0.000000 0.476190 0.000000 0.523810 0.000000 0.000000 0.428571 0.571429 0.000000 0.238095 0.452381 0.309524 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYKBCTC MEME-5 regular expression -------------------------------------------------------------------------------- T[GT][TC][TG][GTC]CTC -------------------------------------------------------------------------------- Time 24.85 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:10169033-10169113 9.60e-01 80 chrIV:11756176-11756256 7.88e-01 80 chrIV:10826156-10826236 8.79e-01 80 chrII:14032885-14032965 1.00e+00 80 chrIV:8796393-8796473 4.19e-01 80 chrV:3712351-3712431 5.40e-01 80 chrV:14939571-14939651 3.93e-02 80 chrX:13532781-13532861 8.35e-03 2_[+1(8.23e-05)]_7_[+1(9.91e-05)]_\ 55 chrIII:3139291-3139371 4.16e-04 1_[+1(3.55e-05)]_71 chrIII:20239-20319 9.54e-01 80 chrI:7515900-7515980 1.36e-04 4_[+3(3.22e-05)]_44_[+4(6.67e-05)]_\ 16 chrIV:11785270-11785350 2.13e-03 39_[+1(3.55e-05)]_33 chrII:10761865-10761945 1.07e-01 15_[+2(4.91e-05)]_57 chrI:7087748-7087828 2.63e-02 10_[+3(5.52e-05)]_62 chrII:6808658-6808738 8.55e-04 61_[+4(6.67e-05)]_11 chrV:4238274-4238354 1.33e-01 4_[+3(7.88e-05)]_68 chrX:11480176-11480256 2.18e-02 80 chrIV:7623939-7624019 1.08e-01 80 chrX:7678569-7678649 4.98e-02 80 chrX:13213601-13213681 4.80e-04 5_[+4(6.67e-05)]_67 chrV:14143808-14143888 2.52e-04 43_[+1(3.55e-05)]_3_[+1(3.55e-05)]_\ 18 chrX:3126412-3126492 6.80e-03 80 chrV:12819352-12819432 2.55e-02 48_[+4(6.67e-05)]_24 chrX:3535629-3535709 1.33e-01 80 chrII:3428331-3428411 2.41e-01 80 chrIV:10477992-10478072 9.68e-01 80 chrI:7122350-7122430 9.95e-01 80 chrIII:10151891-10151971 1.90e-03 42_[+3(5.52e-05)]_30 chrII:4456195-4456275 1.88e-01 80 chrX:15191257-15191337 2.41e-01 80 chrI:7421469-7421549 7.81e-04 13_[+4(6.67e-05)]_59 chrX:13502446-13502526 7.14e-04 33_[+4(4.73e-05)]_11_[+1(8.23e-05)]_\ 20 chrX:3111188-3111268 9.69e-03 5_[+2(2.64e-05)]_10_[+2(2.64e-05)]_\ 35_[+2(4.91e-05)]_6 chrII:7319690-7319770 1.43e-01 80 chrX:8806478-8806558 9.09e-02 69_[+4(9.54e-05)]_3 chrI:12565495-12565575 3.22e-01 80 chrX:7689728-7689808 2.23e-01 80 chrI:12552519-12552599 8.52e-01 80 chrI:9969574-9969654 1.07e-01 80 chrV:6350230-6350310 4.65e-03 57_[+5(2.58e-05)]_15 chrIII:8389555-8389635 2.56e-01 80 chrIV:5960108-5960188 2.00e-02 49_[+4(1.42e-05)]_23 chrIII:13698018-13698098 6.06e-04 8_[+4(1.42e-05)]_64 chrV:6341189-6341269 8.88e-02 80 chrV:14930276-14930356 1.39e-05 12_[+1(1.68e-05)]_60 chrX:14636815-14636895 1.62e-01 80 chrIV:6061120-6061200 1.01e-05 13_[+2(2.64e-05)]_31_[+1(3.55e-05)]_\ 20 chrIV:10478323-10478403 5.38e-01 80 chrX:13210593-13210673 1.01e-03 26_[+1(5.05e-05)]_46 chrIV:4570674-4570754 1.25e-02 65_[+5(2.58e-05)]_7 chrII:5780055-5780135 1.89e-01 80 chrI:2672718-2672798 1.34e-01 80 chrIV:4034971-4035051 4.85e-05 50_[+4(6.67e-05)]_13_[+3(1.09e-05)]_\ 1 chrX:2604825-2604905 2.13e-02 29_[+1(1.68e-05)]_43 chrV:10677671-10677751 4.20e-03 24_[+1(8.23e-05)]_4_[+1(8.23e-05)]_\ 36 chrIV:6958933-6959013 9.72e-02 80 chrIII:11203144-11203224 3.19e-02 14_[+3(3.22e-05)]_58 chrII:2962692-2962772 1.37e-02 34_[+3(7.88e-05)]_38 chrIV:14260867-14260947 6.36e-03 34_[+4(1.42e-05)]_38 chrV:11349035-11349115 2.30e-01 80 chrX:15634081-15634161 7.51e-04 80 chrV:9974371-9974451 4.80e-02 80 chrIII:4656568-4656648 1.17e-03 39_[+3(5.52e-05)]_33 chrI:9101084-9101164 4.33e-01 80 chrX:7284817-7284897 1.03e-02 80 chrI:10040453-10040533 5.32e-01 80 chrIII:11204950-11205030 4.11e-04 40_[+1(9.91e-05)]_15_[+3(7.88e-05)]_\ 9 chrII:6993052-6993132 5.86e-02 80 chrIV:11495155-11495235 1.11e-01 80 chrX:7222581-7222661 6.12e-01 80 chrI:10765785-10765865 5.18e-01 80 chrII:759902-759982 2.14e-02 80 chrIV:11793383-11793463 1.56e-01 80 chrIII:5988163-5988243 6.38e-02 8_[+5(7.76e-05)]_64 chrX:15193200-15193280 1.26e-02 13_[+4(8.33e-05)]_59 chrIII:8394962-8395042 4.25e-03 25_[+4(6.67e-05)]_1_[+4(6.67e-05)]_\ 18_[+4(4.73e-05)]_12 chrI:6441325-6441405 2.88e-01 80 chrIV:6963884-6963964 2.04e-01 80 chrI:9092348-9092428 1.06e-02 47_[+5(2.58e-05)]_25 chrIII:764522-764602 5.60e-04 2_[+4(6.67e-05)]_1_[+4(6.67e-05)]_\ 61 chrIV:14272638-14272718 3.70e-02 80 chrI:6398183-6398263 2.75e-05 1_[+1(3.55e-05)]_8_[+5(7.76e-05)]_\ 24_[+3(1.09e-05)]_23 chrIII:6140130-6140210 7.59e-04 52_[+1(3.55e-05)]_20 chrV:6655327-6655407 2.93e-02 47_[+5(7.76e-05)]_25 chrV:20789225-20789305 1.28e-02 4_[+2(4.91e-05)]_68 chrX:15566764-15566844 1.02e-02 [+1(8.23e-05)]_3_[+5(7.76e-05)]_61 chrX:12629401-12629481 1.47e-01 21_[+5(7.76e-05)]_51 chrIII:3984277-3984357 3.88e-03 4_[+2(9.44e-05)]_68 chrI:10030114-10030194 8.94e-02 29_[+2(2.64e-05)]_43 chrIV:10408819-10408899 4.59e-01 80 chrX:844793-844873 3.14e-02 80 chrX:3116336-3116416 1.03e-02 70_[+3(3.22e-05)]_2 chrX:13739501-13739581 7.18e-03 7_[+2(4.91e-05)]_65 chrX:15600686-15600766 5.57e-01 80 chrX:4151225-4151305 5.29e-01 80 chrV:3717995-3718075 1.98e-02 59_[+4(3.07e-05)]_13 chrII:5341023-5341103 2.79e-02 80 chrX:4721143-4721223 8.41e-01 80 chrX:5820138-5820218 1.34e-02 35_[+2(2.64e-05)]_37 chrI:10031781-10031861 1.68e-05 1_[+1(1.68e-05)]_21_[+2(2.64e-05)]_\ 42 chrV:18490579-18490659 2.76e-01 80 chrX:5976678-5976758 5.82e-01 80 chrX:1599396-1599476 3.27e-02 32_[+1(1.68e-05)]_40 chrI:12571890-12571970 2.08e-02 80 chrIII:5999799-5999879 2.79e-01 80 chrX:13171363-13171443 3.12e-02 37_[+4(6.67e-05)]_35 chrIV:2061932-2062012 3.04e-01 80 chrI:7371997-7372077 8.89e-02 80 chrX:14640061-14640141 2.41e-04 21_[+3(3.22e-05)]_51 chrX:13739711-13739791 1.29e-01 34_[+5(2.58e-05)]_38 chrV:14006988-14007068 2.01e-02 80 chrIII:5827140-5827220 1.65e-01 80 chrX:1522157-1522237 5.44e-03 63_[+4(6.67e-05)]_[+2(2.64e-05)]_1 chrI:1598534-1598614 5.75e-02 80 chrIV:7619436-7619516 1.66e-02 29_[+1(3.55e-05)]_43 chrIV:7400845-7400925 7.80e-02 80 chrII:11751773-11751853 9.45e-02 80 chrI:14769097-14769177 1.04e-04 24_[+1(8.23e-05)]_1_[+1(8.23e-05)]_\ 7_[+1(1.68e-05)]_24 chrI:2681597-2681677 3.89e-03 22_[+1(3.55e-05)]_50 chrI:4911970-4912050 7.20e-01 80 chrIII:2532907-2532987 1.40e-02 43_[+4(1.42e-05)]_29 chrIV:7663150-7663230 3.78e-03 52_[+2(2.64e-05)]_20 chrX:4982206-4982286 8.34e-03 17_[+1(8.23e-05)]_55 chrIV:5951060-5951140 1.45e-04 12_[+2(2.64e-05)]_60 chrIII:1792089-1792169 3.98e-02 16_[+4(1.42e-05)]_56 chrX:5981914-5981994 2.24e-04 5_[+1(8.23e-05)]_14_[+5(2.58e-05)]_\ 45 chrV:9219156-9219236 9.84e-01 80 chrIII:11388191-11388271 6.79e-01 80 chrI:13025848-13025928 1.44e-04 35_[+5(2.58e-05)]_37 chrII:6709150-6709230 4.23e-04 27_[+2(2.64e-05)]_2_[+2(4.91e-05)]_\ 35 chrIII:4662979-4663059 8.33e-01 80 chrX:3818678-3818758 4.86e-02 80 chrV:9966175-9966255 4.55e-01 80 chrI:9167291-9167371 5.71e-03 12_[+1(1.68e-05)]_60 chrI:1807983-1808063 5.26e-03 29_[+4(6.67e-05)]_17_[+4(1.42e-05)]_\ 18 chrX:15983437-15983517 7.17e-01 80 chrI:2577361-2577441 9.90e-03 63_[+1(9.91e-05)]_9 chrV:2131502-2131582 6.35e-01 80 chrX:1062859-1062939 6.91e-02 80 chrII:5276874-5276954 1.97e-03 56_[+2(9.44e-05)]_16 chrX:15386104-15386184 1.69e-01 80 chrX:7327117-7327197 1.82e-01 80 chrX:15342273-15342353 1.40e-01 37_[+2(9.44e-05)]_35 chrII:10379788-10379868 1.50e-03 69_[+1(1.68e-05)]_3 chrX:3049395-3049475 1.19e-01 59_[+4(1.42e-05)]_13 chrIII:6348779-6348859 3.25e-01 80 chrIII:8912038-8912118 3.83e-01 80 chrI:12520489-12520569 5.71e-02 4_[+5(7.76e-05)]_68 chrI:4496524-4496604 1.83e-02 49_[+2(9.44e-05)]_23 chrX:932951-933031 5.35e-02 80 chrIII:7387530-7387610 4.63e-01 80 chrIII:8392534-8392614 8.78e-03 57_[+4(4.73e-05)]_15 chrIV:5100238-5100318 2.71e-02 80 chrX:12828162-12828242 1.38e-01 13_[+2(9.44e-05)]_59 chrX:15395816-15395896 1.13e-02 19_[+3(1.09e-05)]_53 chrV:20782335-20782415 7.55e-01 80 chrI:14346738-14346818 2.82e-03 80 chrIV:3135161-3135241 6.28e-03 4_[+5(2.58e-05)]_68 chrIV:10500172-10500252 5.74e-03 28_[+5(4.89e-05)]_44 chrI:11188225-11188305 9.70e-02 80 chrII:8796588-8796668 5.28e-01 80 chrIV:2985817-2985897 3.94e-01 80 chrX:1529196-1529276 1.16e-03 22_[+4(1.42e-05)]_50 chrII:5725276-5725356 2.78e-04 47_[+1(1.68e-05)]_25 chrI:7955062-7955142 1.56e-03 12_[+3(3.22e-05)]_60 chrV:12026951-12027031 7.24e-02 18_[+4(3.07e-05)]_54 chrV:9664799-9664879 9.78e-01 80 chrIV:11349873-11349953 2.85e-01 80 chrX:9997180-9997260 2.96e-01 80 chrIV:10327190-10327270 4.69e-02 46_[+1(9.91e-05)]_26 chrII:7634221-7634301 9.46e-03 46_[+2(4.91e-05)]_10_[+2(4.91e-05)]_\ 8 chrIV:13877804-13877884 3.75e-02 55_[+2(9.44e-05)]_17 chrIII:6695348-6695428 4.34e-04 80 chrX:7821216-7821296 5.76e-01 80 chrI:1842019-1842099 7.80e-01 80 chrIV:11765757-11765837 6.32e-04 7_[+2(9.44e-05)]_38_[+1(1.68e-05)]_\ 19 chrIII:668432-668512 1.46e-01 80 chrIII:8873366-8873446 8.63e-03 52_[+3(3.22e-05)]_20 chrII:14036956-14037036 2.59e-01 80 chrX:4786061-4786141 2.05e-01 80 chrX:6128428-6128508 1.34e-02 41_[+4(1.42e-05)]_31 chrV:10722025-10722105 7.73e-05 25_[+3(1.09e-05)]_47 chrI:3829804-3829884 2.98e-03 80 chrV:16351128-16351208 5.57e-03 11_[+4(1.42e-05)]_61 chrV:6658900-6658980 4.71e-01 80 chrX:4145691-4145771 2.83e-01 80 chrIV:6393432-6393512 2.45e-03 80 chrIII:9905296-9905376 3.09e-01 80 chrIV:7611607-7611687 9.27e-03 20_[+4(1.42e-05)]_52 chrI:9373433-9373513 2.51e-02 23_[+4(6.67e-05)]_49 chrV:2133670-2133750 1.11e-01 80 chrV:2138483-2138563 2.50e-04 27_[+2(2.64e-05)]_45 chrIV:6809967-6810047 1.13e-05 17_[+4(1.42e-05)]_12_[+2(2.64e-05)]_\ 35 chrI:7954862-7954942 3.60e-05 19_[+2(2.64e-05)]_17_[+3(8.86e-05)]_\ 28 chrI:1691480-1691560 6.18e-02 80 chrI:7951896-7951976 5.07e-06 18_[+1(1.68e-05)]_14_[+2(2.64e-05)]_\ 2_[+4(3.07e-05)]_7_[+2(2.64e-05)]_7 chrIII:5845623-5845703 4.02e-01 80 chrV:1158463-1158543 6.65e-01 80 chrIII:7580766-7580846 1.36e-02 80 chrV:6893843-6893923 2.81e-02 32_[+1(8.23e-05)]_40 chrII:8784741-8784821 4.39e-01 80 chrIII:3677437-3677517 9.38e-04 35_[+1(1.68e-05)]_37 chrII:7327146-7327226 2.02e-01 80 chrIII:880275-880355 8.91e-02 46_[+5(2.58e-05)]_26 chrI:4900949-4901029 4.03e-02 10_[+2(4.91e-05)]_12_[+2(4.91e-05)]_\ 42 chrIV:12771551-12771631 1.35e-03 66_[+3(1.09e-05)]_6 chrII:755849-755929 2.51e-01 12_[+1(9.91e-05)]_60 chrII:1344714-1344794 1.67e-01 80 chrX:4896261-4896341 9.43e-01 80 chrV:20879445-20879525 3.51e-03 1_[+5(2.58e-05)]_46_[+3(7.88e-05)]_\ 17 chrIV:4210972-4211052 9.40e-03 80 chrV:20785620-20785700 8.54e-01 80 chrIII:13724450-13724530 3.26e-03 80 chrIII:6006732-6006812 7.40e-01 80 chrIII:8973282-8973362 2.35e-03 7_[+1(5.05e-05)]_3_[+3(7.88e-05)]_\ 54 chrI:9846500-9846580 1.36e-04 56_[+4(6.67e-05)]_2_[+1(8.23e-05)]_\ 6 chrI:10037751-10037831 1.63e-01 80 chrX:8017487-8017567 7.26e-04 12_[+4(6.67e-05)]_4_[+4(6.67e-05)]_\ 48 chrX:11473393-11473473 1.78e-01 80 chrI:13547422-13547502 8.54e-05 80 chrIII:5755530-5755610 2.67e-01 80 chrV:2135612-2135692 1.16e-01 80 chrI:7124449-7124529 5.64e-01 80 chrIII:12472649-12472729 1.54e-03 80 chrII:8131448-8131528 5.57e-01 80 chrV:7106783-7106863 4.46e-02 80 chrX:17466846-17466926 7.45e-01 80 chrII:7328672-7328752 6.78e-02 80 chrII:6820485-6820565 1.23e-03 51_[+3(1.09e-05)]_11_[+1(8.23e-05)]_\ 2 chrIII:2716481-2716561 1.62e-05 13_[+4(1.42e-05)]_38_[+1(1.68e-05)]_\ 13 chrIII:30643-30723 7.96e-02 25_[+1(3.55e-05)]_47 chrI:6435849-6435929 9.39e-03 80 chrI:9172740-9172820 1.92e-03 80 chrIII:13058261-13058341 2.05e-02 66_[+1(3.55e-05)]_6 chrIII:11201197-11201277 6.05e-04 34_[+2(2.64e-05)]_38 chrX:13768706-13768786 1.06e-01 18_[+1(8.23e-05)]_2_[+1(8.23e-05)]_\ 44 chrX:1018739-1018819 9.48e-01 80 chrI:12546728-12546808 2.18e-01 80 chrIV:4007786-4007866 1.33e-02 48_[+3(4.43e-05)]_24 chrI:10772440-10772520 3.81e-02 80 chrIV:5103485-5103565 9.23e-02 80 chrV:12038932-12039012 2.21e-01 80 chrV:965080-965160 1.53e-01 80 chrI:7412950-7413030 1.33e-04 22_[+1(9.91e-05)]_30_[+2(2.64e-05)]_\ 12 chrI:3292844-3292924 1.35e-01 49_[+3(5.52e-05)]_23 chrIII:67317-67397 2.05e-01 80 chrX:8801082-8801162 1.02e-01 80 chrV:10174797-10174877 1.04e-01 68_[+1(5.05e-05)]_4 chrV:10260806-10260886 9.08e-01 80 chrII:5336125-5336205 1.44e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************