******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/hif-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:7102447-7102527 1.0000 80 chrIII:6935679-6935759 1.0000 80 chrX:11969727-11969807 1.0000 80 chrX:16151470-16151550 1.0000 80 chrII:13732736-13732816 1.0000 80 chrV:3771913-3771993 1.0000 80 chrX:3022835-3022915 1.0000 80 chrII:9154474-9154554 1.0000 80 chrII:8931525-8931605 1.0000 80 chrV:3579347-3579427 1.0000 80 chrIII:3922071-3922151 1.0000 80 chrV:10469335-10469415 1.0000 80 chrIV:12218403-12218483 1.0000 80 chrIV:9215997-9216077 1.0000 80 chrIII:8925678-8925758 1.0000 80 chrII:8451574-8451654 1.0000 80 chrV:10474187-10474267 1.0000 80 chrX:16772297-16772377 1.0000 80 chrII:9156474-9156554 1.0000 80 chrIV:16422062-16422142 1.0000 80 chrIII:3875008-3875088 1.0000 80 chrI:6181167-6181247 1.0000 80 chrV:10464900-10464980 1.0000 80 chrX:7661333-7661413 1.0000 80 chrIV:9259869-9259949 1.0000 80 chrIV:484187-484267 1.0000 80 chrX:1337984-1338064 1.0000 80 chrX:4139714-4139794 1.0000 80 chrX:6729185-6729265 1.0000 80 chrIII:13550079-13550159 1.0000 80 chrIV:9508791-9508871 1.0000 80 chrX:8257895-8257975 1.0000 80 chrIV:4478584-4478664 1.0000 80 chrV:10876634-10876714 1.0000 80 chrV:1038207-1038287 1.0000 80 chrV:2050317-2050397 1.0000 80 chrI:3298337-3298417 1.0000 80 chrIV:365135-365215 1.0000 80 chrIII:7463776-7463856 1.0000 80 chrII:10483068-10483148 1.0000 80 chrI:11932209-11932289 1.0000 80 chrI:13576515-13576595 1.0000 80 chrX:7445941-7446021 1.0000 80 chrIII:7643246-7643326 1.0000 80 chrIII:7722546-7722626 1.0000 80 chrII:9352808-9352888 1.0000 80 chrX:2592977-2593057 1.0000 80 chrII:9606774-9606854 1.0000 80 chrX:14495247-14495327 1.0000 80 chrX:17481734-17481814 1.0000 80 chrIII:6168991-6169071 1.0000 80 chrII:8483911-8483991 1.0000 80 chrII:9482665-9482745 1.0000 80 chrX:5209559-5209639 1.0000 80 chrX:2939246-2939326 1.0000 80 chrII:12052287-12052367 1.0000 80 chrII:13627176-13627256 1.0000 80 chrV:6666728-6666808 1.0000 80 chrI:6375833-6375913 1.0000 80 chrX:8017836-8017916 1.0000 80 chrIII:6871813-6871893 1.0000 80 chrIII:8926703-8926783 1.0000 80 chrIV:14219815-14219895 1.0000 80 chrIII:6962261-6962341 1.0000 80 chrII:12615572-12615652 1.0000 80 chrV:14003930-14004010 1.0000 80 chrIV:826326-826406 1.0000 80 chrIII:11379223-11379303 1.0000 80 chrII:14495546-14495626 1.0000 80 chrIV:7390560-7390640 1.0000 80 chrIII:7358820-7358900 1.0000 80 chrI:2628683-2628763 1.0000 80 chrII:11705908-11705988 1.0000 80 chrV:3777138-3777218 1.0000 80 chrIV:14050568-14050648 1.0000 80 chrII:12261558-12261638 1.0000 80 chrI:10174884-10174964 1.0000 80 chrI:12542242-12542322 1.0000 80 chrV:10179336-10179416 1.0000 80 chrV:10473076-10473156 1.0000 80 chrII:12380440-12380520 1.0000 80 chrIV:2193698-2193778 1.0000 80 chrX:14568511-14568591 1.0000 80 chrII:4941778-4941858 1.0000 80 chrI:2591587-2591667 1.0000 80 chrIII:13768440-13768520 1.0000 80 chrX:14243702-14243782 1.0000 80 chrIV:16420184-16420264 1.0000 80 chrV:17322674-17322754 1.0000 80 chrV:13047677-13047757 1.0000 80 chrIV:2618764-2618844 1.0000 80 chrII:15207733-15207813 1.0000 80 chrV:8285901-8285981 1.0000 80 chrIV:17101103-17101183 1.0000 80 chrII:14494639-14494719 1.0000 80 chrIV:13396540-13396620 1.0000 80 chrX:5355452-5355532 1.0000 80 chrX:12198486-12198566 1.0000 80 chrI:7581882-7581962 1.0000 80 chrV:2140039-2140119 1.0000 80 chrV:20710306-20710386 1.0000 80 chrV:10472114-10472194 1.0000 80 chrI:6373891-6373971 1.0000 80 chrI:3867358-3867438 1.0000 80 chrX:17627526-17627606 1.0000 80 chrI:2666705-2666785 1.0000 80 chrX:7636264-7636344 1.0000 80 chrV:20161972-20162052 1.0000 80 chrI:9279475-9279555 1.0000 80 chrIV:9260477-9260557 1.0000 80 chrII:7394129-7394209 1.0000 80 chrX:2216437-2216517 1.0000 80 chrII:7341866-7341946 1.0000 80 chrV:3784495-3784575 1.0000 80 chrIII:3908339-3908419 1.0000 80 chrV:14002020-14002100 1.0000 80 chrIV:9063711-9063791 1.0000 80 chrV:5889832-5889912 1.0000 80 chrV:2731239-2731319 1.0000 80 chrV:7548189-7548269 1.0000 80 chrIII:13566141-13566221 1.0000 80 chrX:3055622-3055702 1.0000 80 chrX:8477161-8477241 1.0000 80 chrII:10693808-10693888 1.0000 80 chrX:15338353-15338433 1.0000 80 chrV:5813444-5813524 1.0000 80 chrV:9078940-9079020 1.0000 80 chrX:17628478-17628558 1.0000 80 chrV:10146969-10147049 1.0000 80 chrX:3729077-3729157 1.0000 80 chrV:8288597-8288677 1.0000 80 chrIV:16422296-16422376 1.0000 80 chrIII:3104645-3104725 1.0000 80 chrII:10300549-10300629 1.0000 80 chrX:12870230-12870310 1.0000 80 chrX:8470510-8470590 1.0000 80 chrII:1663664-1663744 1.0000 80 chrX:8481919-8481999 1.0000 80 chrV:5820592-5820672 1.0000 80 chrX:13360017-13360097 1.0000 80 chrX:4142750-4142830 1.0000 80 chrIII:3117128-3117208 1.0000 80 chrII:9155238-9155318 1.0000 80 chrV:10468383-10468463 1.0000 80 chrII:4728862-4728942 1.0000 80 chrV:20903337-20903417 1.0000 80 chrX:14787351-14787431 1.0000 80 chrI:9842480-9842560 1.0000 80 chrX:11964764-11964844 1.0000 80 chrV:10590332-10590412 1.0000 80 chrIV:13313402-13313482 1.0000 80 chrIV:8453338-8453418 1.0000 80 chrI:2654651-2654731 1.0000 80 chrII:12050765-12050845 1.0000 80 chrI:9317085-9317165 1.0000 80 chrX:13106588-13106668 1.0000 80 chrX:6665673-6665753 1.0000 80 chrIV:8452383-8452463 1.0000 80 chrX:4143509-4143589 1.0000 80 chrIII:2756868-2756948 1.0000 80 chrIV:3647717-3647797 1.0000 80 chrX:9539452-9539532 1.0000 80 chrIII:13565095-13565175 1.0000 80 chrX:325731-325811 1.0000 80 chrII:8484657-8484737 1.0000 80 chrII:13065363-13065443 1.0000 80 chrII:9483516-9483596 1.0000 80 chrX:5205696-5205776 1.0000 80 chrX:915639-915719 1.0000 80 chrII:11722332-11722412 1.0000 80 chrIII:67211-67291 1.0000 80 chrX:17631845-17631925 1.0000 80 chrX:16346558-16346638 1.0000 80 chrII:9160392-9160472 1.0000 80 chrX:16793672-16793752 1.0000 80 chrX:13351484-13351564 1.0000 80 chrIV:17263928-17264008 1.0000 80 chrX:14788804-14788884 1.0000 80 chrI:6569461-6569541 1.0000 80 chrII:8931737-8931817 1.0000 80 chrIII:3318014-3318094 1.0000 80 chrIV:14613061-14613141 1.0000 80 chrX:6746860-6746940 1.0000 80 chrII:11050050-11050130 1.0000 80 chrII:13467974-13468054 1.0000 80 chrI:4072834-4072914 1.0000 80 chrIV:17333656-17333736 1.0000 80 chrX:8088744-8088824 1.0000 80 chrII:6025792-6025872 1.0000 80 chrIV:14606667-14606747 1.0000 80 chrV:10247158-10247238 1.0000 80 chrX:10238502-10238582 1.0000 80 chrX:15365972-15366052 1.0000 80 chrX:12436636-12436716 1.0000 80 chrIV:429067-429147 1.0000 80 chrX:3108645-3108725 1.0000 80 chrX:7867499-7867579 1.0000 80 chrII:11472662-11472742 1.0000 80 chrV:3344220-3344300 1.0000 80 chrX:4141305-4141385 1.0000 80 chrIV:4216191-4216271 1.0000 80 chrX:3537284-3537364 1.0000 80 chrIV:4400747-4400827 1.0000 80 chrV:10731160-10731240 1.0000 80 chrX:2596784-2596864 1.0000 80 chrIV:14883937-14884017 1.0000 80 chrV:8653525-8653605 1.0000 80 chrIII:6170222-6170302 1.0000 80 chrIV:10511556-10511636 1.0000 80 chrII:4888992-4889072 1.0000 80 chrX:7952445-7952525 1.0000 80 chrIV:4022496-4022576 1.0000 80 chrI:5826647-5826727 1.0000 80 chrV:13263203-13263283 1.0000 80 chrI:8866830-8866910 1.0000 80 chrV:6244867-6244947 1.0000 80 chrII:13638633-13638713 1.0000 80 chrIII:5081181-5081261 1.0000 80 chrII:8449890-8449970 1.0000 80 chrIV:1851050-1851130 1.0000 80 chrIV:11349008-11349088 1.0000 80 chrIII:10380905-10380985 1.0000 80 chrV:9080055-9080135 1.0000 80 chrX:17068781-17068861 1.0000 80 chrII:6942887-6942967 1.0000 80 chrI:3798656-3798736 1.0000 80 chrII:8485728-8485808 1.0000 80 chrX:9536130-9536210 1.0000 80 chrII:9157257-9157337 1.0000 80 chrI:7676305-7676385 1.0000 80 chrX:12454427-12454507 1.0000 80 chrV:10891137-10891217 1.0000 80 chrII:1500575-1500655 1.0000 80 chrX:1904318-1904398 1.0000 80 chrV:11822575-11822655 1.0000 80 chrII:4552251-4552331 1.0000 80 chrI:4651021-4651101 1.0000 80 chrI:2857722-2857802 1.0000 80 chrII:12622317-12622397 1.0000 80 chrX:1620859-1620939 1.0000 80 chrV:15666919-15666999 1.0000 80 chrII:12625830-12625910 1.0000 80 chrX:8479231-8479311 1.0000 80 chrIII:3954331-3954411 1.0000 80 chrV:4630223-4630303 1.0000 80 chrIV:9051808-9051888 1.0000 80 chrX:15222083-15222163 1.0000 80 chrX:864507-864587 1.0000 80 chrIV:12196773-12196853 1.0000 80 chrX:10051802-10051882 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_hif-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/hif-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.291 C 0.209 G 0.206 T 0.293 Background letter frequencies (from file dataset with add-one prior applied): A 0.291 C 0.209 G 0.206 T 0.293 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WKKCACGT MEME-1 width = 8 sites = 69 llr = 556 E-value = 2.4e-032 ******************************************************************************** -------------------------------------------------------------------------------- Motif WKKCACGT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 21::a::: pos.-specific C 22:a:a:: probability G 135:::a: matrix T 545::::a bits 2.3 * ** 2.1 * ** 1.8 ***** 1.6 ***** Relative 1.4 ***** Entropy 1.1 ****** (11.6 bits) 0.9 ****** 0.7 ****** 0.5 ****** 0.2 ******* 0.0 -------- Multilevel TTGCACGT consensus AGT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKKCACGT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:9279475-9279555 64 9.54e-06 ACCTTGTTTT TGGCACGT TCTCTATCA chrX:2939246-2939326 33 9.54e-06 AAATGCGTTT TGGCACGT CGAAAACATT chrX:16346558-16346638 39 2.31e-05 AATGATGACA TTGCACGT ATGTTCTATG chrIII:67211-67291 57 2.31e-05 TTTTGACAAT TTGCACGT AGCGTGATTT chrX:325731-325811 8 2.31e-05 TGCCTAC TTGCACGT ACAAAAAAAT chrX:4142750-4142830 5 2.31e-05 TTTT TTGCACGT CGCCGGCCGG chrX:13360017-13360097 46 2.31e-05 TCTAACAATA TTGCACGT AACGGACCCT chrV:20161972-20162052 62 2.31e-05 TGCTCATAAT TTGCACGT AACAGCCTTC chrX:17481734-17481814 47 2.31e-05 ATTGTCTACT TTGCACGT CTCACCCAAG chrIV:4478584-4478664 54 2.31e-05 ATCATGGAAG TTGCACGT TTTACCAATT chrIII:13550079-13550159 64 2.31e-05 GTCACAGTTG TTGCACGT GAAAAAGAA chrX:7661333-7661413 54 2.31e-05 TCTTGCGATT TTGCACGT ATTCGTCCTC chrIII:3954331-3954411 48 3.67e-05 CTTTCTTGTT TGTCACGT GCGCGCATAG chrX:17068781-17068861 23 3.67e-05 CGCATCAAAA TGTCACGT GTTTCTCCTT chrV:8653525-8653605 70 3.67e-05 TCTTGCAGAA TGTCACGT AGA chrX:13106588-13106668 47 3.67e-05 TGCAGACAAG TGTCACGT GAGGATACAA chrIII:3117128-3117208 14 3.67e-05 TGTCTGAAAA TGTCACGT TTTTTGATAA chrIV:13396540-13396620 61 3.67e-05 CACACAGTAC TGTCACGT AAGAGACTCC chrX:16772297-16772377 66 3.67e-05 TTTTCGTGTT TGTCACGT AAAAACG chrII:8485728-8485808 12 5.60e-05 ATATTCGATT TTTCACGT CCTTGTCATA chrII:13065363-13065443 13 5.60e-05 TGTTTTGATT TTTCACGT TTTCCTCCTC chrII:4941778-4941858 34 5.60e-05 TTGTGCATCT TTTCACGT ACTCCGCATC chrI:10174884-10174964 37 7.51e-05 ACACAGTGAT TCGCACGT TTTTACGAAA chrII:12615572-12615652 17 7.51e-05 TTTTTGCAAA TCGCACGT AATCAGTTCA chrX:915639-915719 10 9.54e-05 TCTTCATTA ATGCACGT AAACAAATGA chrIV:13313402-13313482 73 9.54e-05 TCTTCCACAA CGGCACGT chrX:8477161-8477241 64 9.54e-05 GAGTCGGTTT CGGCACGT CCGCGAGAA chrIII:13768440-13768520 54 9.54e-05 TATCGTGAAA ATGCACGT TTCTTTCGAA chrV:14003930-14004010 61 9.54e-05 GCTCGATGAA ATGCACGT AGAGGTCATG chrIII:7722546-7722626 45 9.54e-05 TGTTGAGAAT CGGCACGT TTTCGTTTTC chrII:8451574-8451654 73 9.54e-05 TCGTCTCGTT CGGCACGT chrI:4651021-4651101 64 1.05e-04 TGGGTAAAAA CTGCACGT ATTTTCCTC chrX:14243702-14243782 31 1.05e-04 ATACCGCGTA CTGCACGT AAACGAGTCG chrX:14568511-14568591 1 1.05e-04 . CTGCACGT ATCTTATCTG chrX:5209559-5209639 34 1.05e-04 ACTTCTCAAA CTGCACGT CCGCAACCTT chrI:13576515-13576595 72 1.05e-04 TTTTTGCATT CTGCACGT A chrIII:6935679-6935759 32 1.05e-04 TCACTCTATT CTGCACGT AGGCTTTGCT chrII:7102447-7102527 27 1.05e-04 TTTTTAAAGT CTGCACGT ATATTTCACA chrII:13638633-13638713 39 1.39e-04 AGATTGTAAA AGTCACGT AGACAATGAC chrIV:3647717-3647797 38 1.39e-04 TTTTTGCATG TCTCACGT ATCTCCACGG chrX:15338353-15338433 27 1.39e-04 ATTTTGTCAC TCTCACGT TTTGTTATAT chrV:5889832-5889912 60 1.39e-04 TTTTTCTGAA AGTCACGT CTTCTCGGAA chrII:13627176-13627256 53 1.39e-04 GCATGGCTAA AGTCACGT CCGTTTGTCT chrII:9482665-9482745 72 1.39e-04 GAGTTCAAAA AGTCACGT T chrIII:7463776-7463856 21 1.39e-04 ATGTTGAAAA TCTCACGT TTACCAAACA chrIV:16422062-16422142 3 1.39e-04 GA AGTCACGT ATTATACCGC chrV:10474187-10474267 68 1.39e-04 TGTGTTGTAT TCTCACGT AAACT chrII:8931525-8931605 28 1.39e-04 ACTTCGTGTA AGTCACGT ATTTAGGCGA chrI:2666705-2666785 42 1.77e-04 TTTTCAAGAA GTGCACGT AACTGCACAC chrIII:11379223-11379303 35 1.77e-04 GTCTTCGGAA ATTCACGT ATTCTATTGA chrIII:6871813-6871893 18 1.77e-04 TTCTCATTTT GTGCACGT TCCTCTTTAT chrII:8483911-8483991 19 1.77e-04 TCTTCGCAAG ATTCACGT TTCGGACCCG chrX:4139714-4139794 55 1.77e-04 AGTTTTCATT GTGCACGT TTCATTCGTT chrII:12622317-12622397 59 2.10e-04 AGAAGGATCC GGTCACGT GGTGGATGTC chrV:11822575-11822655 44 2.10e-04 AAATGTGAAA GGTCACGT ACGCAGAGCA chrII:9157257-9157337 18 2.10e-04 ATCATAAATT ACGCACGT CTGCTGATTT chrI:4072834-4072914 70 2.44e-04 TGCCAAATGA TAGCACGT TCG chrX:5355452-5355532 45 2.65e-04 TGTCAATAGA GCGCACGT GCAATTCTCA chrII:13732736-13732816 55 2.65e-04 TCTTTCGACT ACTCACGT TTAGTCGCAA chrIV:4216191-4216271 26 2.94e-04 AGCTGCAATT TATCACGT TCTATGGCCA chrII:9160392-9160472 29 2.94e-04 AGTTGCTGAT TATCACGT ACGCATGTCT chrV:10468383-10468463 61 2.94e-04 TCGTTCATTT TATCACGT TCACATATTT chrX:17628478-17628558 48 3.03e-04 TTCTGCTCAT GCTCACGT ACACACATTC chrIV:9063711-9063791 32 3.03e-04 TTGTTCGAAT GCTCACGT ACGCAGGGTG chrIV:2193698-2193778 28 3.03e-04 TTTTGAACAA GCTCACGT AGGCTCGCGG chrV:6666728-6666808 39 3.17e-04 ATTTATCAAG AAGCACGT ACTCGGGAAT chrX:10051802-10051882 19 3.55e-04 GCCCTTATCT AATCACGT GGTTAATTTC chrI:3298337-3298417 22 3.55e-04 AACCACAAAA AATCACGT AAGAAGACGT chrIV:9508791-9508871 62 3.55e-04 AAACGGCTAG AATCACGT TTGGGCGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKKCACGT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:9279475-9279555 9.5e-06 63_[+1]_9 chrX:2939246-2939326 9.5e-06 32_[+1]_40 chrX:16346558-16346638 2.3e-05 38_[+1]_34 chrIII:67211-67291 2.3e-05 56_[+1]_16 chrX:325731-325811 2.3e-05 7_[+1]_65 chrX:4142750-4142830 2.3e-05 4_[+1]_68 chrX:13360017-13360097 2.3e-05 45_[+1]_27 chrV:20161972-20162052 2.3e-05 61_[+1]_11 chrX:17481734-17481814 2.3e-05 46_[+1]_26 chrIV:4478584-4478664 2.3e-05 53_[+1]_19 chrIII:13550079-13550159 2.3e-05 63_[+1]_9 chrX:7661333-7661413 2.3e-05 53_[+1]_19 chrIII:3954331-3954411 3.7e-05 47_[+1]_25 chrX:17068781-17068861 3.7e-05 22_[+1]_50 chrV:8653525-8653605 3.7e-05 69_[+1]_3 chrX:13106588-13106668 3.7e-05 46_[+1]_26 chrIII:3117128-3117208 3.7e-05 13_[+1]_59 chrIV:13396540-13396620 3.7e-05 60_[+1]_12 chrX:16772297-16772377 3.7e-05 65_[+1]_7 chrII:8485728-8485808 5.6e-05 11_[+1]_61 chrII:13065363-13065443 5.6e-05 12_[+1]_60 chrII:4941778-4941858 5.6e-05 33_[+1]_39 chrI:10174884-10174964 7.5e-05 36_[+1]_36 chrII:12615572-12615652 7.5e-05 16_[+1]_56 chrX:915639-915719 9.5e-05 9_[+1]_63 chrIV:13313402-13313482 9.5e-05 72_[+1] chrX:8477161-8477241 9.5e-05 63_[+1]_9 chrIII:13768440-13768520 9.5e-05 53_[+1]_19 chrV:14003930-14004010 9.5e-05 60_[+1]_12 chrIII:7722546-7722626 9.5e-05 44_[+1]_28 chrII:8451574-8451654 9.5e-05 72_[+1] chrI:4651021-4651101 0.00011 63_[+1]_9 chrX:14243702-14243782 0.00011 30_[+1]_42 chrX:14568511-14568591 0.00011 [+1]_72 chrX:5209559-5209639 0.00011 33_[+1]_39 chrI:13576515-13576595 0.00011 71_[+1]_1 chrIII:6935679-6935759 0.00011 31_[+1]_41 chrII:7102447-7102527 0.00011 26_[+1]_46 chrII:13638633-13638713 0.00014 38_[+1]_34 chrIV:3647717-3647797 0.00014 37_[+1]_35 chrX:15338353-15338433 0.00014 26_[+1]_46 chrV:5889832-5889912 0.00014 59_[+1]_13 chrII:13627176-13627256 0.00014 52_[+1]_20 chrII:9482665-9482745 0.00014 71_[+1]_1 chrIII:7463776-7463856 0.00014 20_[+1]_52 chrIV:16422062-16422142 0.00014 2_[+1]_70 chrV:10474187-10474267 0.00014 67_[+1]_5 chrII:8931525-8931605 0.00014 27_[+1]_45 chrI:2666705-2666785 0.00018 41_[+1]_31 chrIII:11379223-11379303 0.00018 34_[+1]_38 chrIII:6871813-6871893 0.00018 17_[+1]_55 chrII:8483911-8483991 0.00018 18_[+1]_54 chrX:4139714-4139794 0.00018 54_[+1]_18 chrII:12622317-12622397 0.00021 58_[+1]_14 chrV:11822575-11822655 0.00021 43_[+1]_29 chrII:9157257-9157337 0.00021 17_[+1]_55 chrI:4072834-4072914 0.00024 69_[+1]_3 chrX:5355452-5355532 0.00026 44_[+1]_28 chrII:13732736-13732816 0.00026 54_[+1]_18 chrIV:4216191-4216271 0.00029 25_[+1]_47 chrII:9160392-9160472 0.00029 28_[+1]_44 chrV:10468383-10468463 0.00029 60_[+1]_12 chrX:17628478-17628558 0.0003 47_[+1]_25 chrIV:9063711-9063791 0.0003 31_[+1]_41 chrIV:2193698-2193778 0.0003 27_[+1]_45 chrV:6666728-6666808 0.00032 38_[+1]_34 chrX:10051802-10051882 0.00035 18_[+1]_54 chrI:3298337-3298417 0.00035 21_[+1]_51 chrIV:9508791-9508871 0.00035 61_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKKCACGT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WKKCACGT width=8 seqs=69 chrI:9279475-9279555 ( 64) TGGCACGT 1 chrX:2939246-2939326 ( 33) TGGCACGT 1 chrX:16346558-16346638 ( 39) TTGCACGT 1 chrIII:67211-67291 ( 57) TTGCACGT 1 chrX:325731-325811 ( 8) TTGCACGT 1 chrX:4142750-4142830 ( 5) TTGCACGT 1 chrX:13360017-13360097 ( 46) TTGCACGT 1 chrV:20161972-20162052 ( 62) TTGCACGT 1 chrX:17481734-17481814 ( 47) TTGCACGT 1 chrIV:4478584-4478664 ( 54) TTGCACGT 1 chrIII:13550079-13550159 ( 64) TTGCACGT 1 chrX:7661333-7661413 ( 54) TTGCACGT 1 chrIII:3954331-3954411 ( 48) TGTCACGT 1 chrX:17068781-17068861 ( 23) TGTCACGT 1 chrV:8653525-8653605 ( 70) TGTCACGT 1 chrX:13106588-13106668 ( 47) TGTCACGT 1 chrIII:3117128-3117208 ( 14) TGTCACGT 1 chrIV:13396540-13396620 ( 61) TGTCACGT 1 chrX:16772297-16772377 ( 66) TGTCACGT 1 chrII:8485728-8485808 ( 12) TTTCACGT 1 chrII:13065363-13065443 ( 13) TTTCACGT 1 chrII:4941778-4941858 ( 34) TTTCACGT 1 chrI:10174884-10174964 ( 37) TCGCACGT 1 chrII:12615572-12615652 ( 17) TCGCACGT 1 chrX:915639-915719 ( 10) ATGCACGT 1 chrIV:13313402-13313482 ( 73) CGGCACGT 1 chrX:8477161-8477241 ( 64) CGGCACGT 1 chrIII:13768440-13768520 ( 54) ATGCACGT 1 chrV:14003930-14004010 ( 61) ATGCACGT 1 chrIII:7722546-7722626 ( 45) CGGCACGT 1 chrII:8451574-8451654 ( 73) CGGCACGT 1 chrI:4651021-4651101 ( 64) CTGCACGT 1 chrX:14243702-14243782 ( 31) CTGCACGT 1 chrX:14568511-14568591 ( 1) CTGCACGT 1 chrX:5209559-5209639 ( 34) CTGCACGT 1 chrI:13576515-13576595 ( 72) CTGCACGT 1 chrIII:6935679-6935759 ( 32) CTGCACGT 1 chrII:7102447-7102527 ( 27) CTGCACGT 1 chrII:13638633-13638713 ( 39) AGTCACGT 1 chrIV:3647717-3647797 ( 38) TCTCACGT 1 chrX:15338353-15338433 ( 27) TCTCACGT 1 chrV:5889832-5889912 ( 60) AGTCACGT 1 chrII:13627176-13627256 ( 53) AGTCACGT 1 chrII:9482665-9482745 ( 72) AGTCACGT 1 chrIII:7463776-7463856 ( 21) TCTCACGT 1 chrIV:16422062-16422142 ( 3) AGTCACGT 1 chrV:10474187-10474267 ( 68) TCTCACGT 1 chrII:8931525-8931605 ( 28) AGTCACGT 1 chrI:2666705-2666785 ( 42) GTGCACGT 1 chrIII:11379223-11379303 ( 35) ATTCACGT 1 chrIII:6871813-6871893 ( 18) GTGCACGT 1 chrII:8483911-8483991 ( 19) ATTCACGT 1 chrX:4139714-4139794 ( 55) GTGCACGT 1 chrII:12622317-12622397 ( 59) GGTCACGT 1 chrV:11822575-11822655 ( 44) GGTCACGT 1 chrII:9157257-9157337 ( 18) ACGCACGT 1 chrI:4072834-4072914 ( 70) TAGCACGT 1 chrX:5355452-5355532 ( 45) GCGCACGT 1 chrII:13732736-13732816 ( 55) ACTCACGT 1 chrIV:4216191-4216271 ( 26) TATCACGT 1 chrII:9160392-9160472 ( 29) TATCACGT 1 chrV:10468383-10468463 ( 61) TATCACGT 1 chrX:17628478-17628558 ( 48) GCTCACGT 1 chrIV:9063711-9063791 ( 32) GCTCACGT 1 chrIV:2193698-2193778 ( 28) GCTCACGT 1 chrV:6666728-6666808 ( 39) AAGCACGT 1 chrX:10051802-10051882 ( 19) AATCACGT 1 chrI:3298337-3298417 ( 22) AATCACGT 1 chrIV:9508791-9508871 ( 62) AATCACGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKKCACGT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0668 E= 2.4e-032 -24 -39 -66 66 -133 -27 56 47 -1275 -1275 130 75 -1275 226 -1275 -1275 178 -1275 -1275 -1275 -1275 226 -1275 -1275 -1275 -1275 228 -1275 -1275 -1275 -1275 177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKKCACGT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 2.4e-032 0.246377 0.159420 0.130435 0.463768 0.115942 0.173913 0.304348 0.405797 0.000000 0.000000 0.507246 0.492754 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKKCACGT MEME-1 regular expression -------------------------------------------------------------------------------- [TA][TG][GT]CACGT -------------------------------------------------------------------------------- Time 5.11 secs. ******************************************************************************** ******************************************************************************** MOTIF VTACGTGM MEME-2 width = 8 sites = 69 llr = 553 E-value = 8.1e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif VTACGTGM MEME-2 Description -------------------------------------------------------------------------------- Simplified A 329::::5 pos.-specific C 4:1a:::4 probability G 3:1:a:a: matrix T 17:::a:: bits 2.3 ** * 2.1 ** * 1.8 **** 1.6 **** Relative 1.4 **** Entropy 1.1 ***** (11.6 bits) 0.9 ****** 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel CTACGTGA consensus AA C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTACGTGM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9536130-9536210 2 9.68e-06 C CTACGTGC AAAAAGGTAT chrI:5826647-5826727 52 9.68e-06 CGACAGAGGA CTACGTGC CAATGGCTCG chrI:4072834-4072914 55 9.68e-06 GCGCATTCGC CTACGTGC CAAATGATAG chrX:4143509-4143589 52 9.68e-06 ATGTTCTGGC CTACGTGC GATTTGCATA chrV:7548189-7548269 7 9.68e-06 TTTTGG CTACGTGC ATCAAAATTT chrV:17322674-17322754 22 9.68e-06 TTCAGTCTCC CTACGTGC ATTTTCTCAT chrII:9156474-9156554 35 9.68e-06 TTTTAGTCGA CTACGTGC ATTTTAAGGG chrIII:10380905-10380985 47 2.32e-05 GTACTGCAAT CTACGTGA CTCTGAAAAA chrII:9160392-9160472 45 2.32e-05 GTACGCATGT CTACGTGA CTTTCATCAA chrIII:13565095-13565175 30 2.32e-05 TTGAGGGGCC CTACGTGA TTTGCACGAA chrI:9842480-9842560 58 2.32e-05 TTTTGCGCCG CTACGTGA GTTTCCTCAA chrX:14787351-14787431 36 2.32e-05 TTGATTGATG CTACGTGA GAAACAAAAC chrII:7341866-7341946 30 2.32e-05 TGTGTCCCTG CTACGTGA TTTTTTGAAC chrI:2628683-2628763 38 2.32e-05 TTTTCGATGC CTACGTGA GAATTCTCAG chrIV:14219815-14219895 11 2.32e-05 AGTCTATTGC CTACGTGA CTTTTCTCAT chrIV:9259869-9259949 39 2.32e-05 CAGTAGTCTG CTACGTGA CTATTGGCAC chrIII:3875008-3875088 14 2.32e-05 GTGTACCTGT CTACGTGA CAAAATACAG chrIV:12218403-12218483 46 2.32e-05 ATTCCGATGC CTACGTGA CTGTGATGCT chrIII:3922071-3922151 23 2.32e-05 TTGAACTTGC CTACGTGA CAATTTACAA chrX:15222083-15222163 71 3.27e-05 ATATAGAAAC GTACGTGC AA chrIV:8452383-8452463 48 3.27e-05 AAATATAAAT GTACGTGC AATTCAGAAT chrX:2216437-2216517 62 3.27e-05 GGAATTGTGT GTACGTGC AAAAAAGATA chrI:2591587-2591667 1 3.27e-05 . GTACGTGC TCTTTTCCAA chrX:1904318-1904398 58 4.60e-05 CTTTGCAAAT GTACGTGA CTACTGTCGT chrIII:8926703-8926783 57 4.60e-05 TAGCAAGTGT GTACGTGA GTTCACAATG chrX:8257895-8257975 60 4.60e-05 CTTCATATTC GTACGTGA CAGTTTGAAA chrX:1620859-1620939 51 5.95e-05 TGTTTTTGTT ATACGTGC AACTTTCAAA chrII:14494639-14494719 17 5.95e-05 GAAAACAATA ATACGTGC GAGATGAGTA chrI:6569461-6569541 15 7.82e-05 AATGTTAGAG ATACGTGA TAGAAGAGTT chrX:3055622-3055702 52 7.82e-05 GAAAGTAACA ATACGTGA CAAATTCAAA chrV:2140039-2140119 31 7.82e-05 TTCTCCAGGC ATACGTGA CTTTTTGTAA chrV:13047677-13047757 5 7.82e-05 TTTC ATACGTGA ATTTTGACAC chrII:9154474-9154554 32 7.82e-05 CTTTTGCATA ATACGTGA AAAAGAGCAC chrII:10693808-10693888 7 8.78e-05 AGTGAA CAACGTGC AAAAAGACAG chrII:11705908-11705988 41 1.01e-04 TAGTTGATGG CAACGTGA TTATTATCAA chrV:14002020-14002100 36 1.11e-04 TTCGACACTT GAACGTGC GGTTTGCAAA chrIV:826326-826406 39 1.11e-04 GATGACCATT GAACGTGC AAAAAATGAG chrV:8288597-8288677 56 1.24e-04 GCGCTATGGG GAACGTGA TGTCTATTAG chrIV:2618764-2618844 57 1.24e-04 GAGAGTCTGT GAACGTGA ATAAATTAAA chrV:3777138-3777218 43 1.24e-04 CTCTCGCGGT GAACGTGA CTTTTCTGAT chrIII:8925678-8925758 8 1.24e-04 CCAAAGT GAACGTGA CAAAATGAAA chrII:11722332-11722412 13 1.37e-04 ATTTCGGTTG AAACGTGC AAAAGTGAAA chrX:8481919-8481999 20 1.37e-04 CTTGCTGTTG AAACGTGC GCTTGTGCAA chrV:10473076-10473156 11 1.37e-04 CATCCTCACC AAACGTGC AAAACACGAT chrIV:9215997-9216077 50 1.37e-04 TTTTCTTGAG AAACGTGC AGTTTTCTGT chrX:8088744-8088824 71 1.56e-04 TCAAAAGTTC AAACGTGA TA chrX:16793672-16793752 58 1.56e-04 ATTTCGAGGA AAACGTGA TGGCAAGGTG chrV:5813444-5813524 48 1.56e-04 CATAGTTTGA AAACGTGA ACATTTGTAG chrV:10179336-10179416 36 1.56e-04 TTATCGAACA AAACGTGA CTTGTAAGAG chrV:10876634-10876714 19 1.56e-04 TCAAAAGAGC AAACGTGA CGAATTGGAA chrII:7394129-7394209 57 1.63e-04 TCTTATTCGC CTCCGTGC CTAAACATAA chrX:4139714-4139794 4 1.63e-04 TGC CTCCGTGC TTCTCCTTTT chrIV:484187-484267 42 1.73e-04 ACTGGCAGCT CTCCGTGA GCAAAGAGCT chrIII:3908339-3908419 27 1.79e-04 GACTCTGTGT CTGCGTGC AAAACTGAAA chrI:6375833-6375913 31 2.09e-04 TGTTATCTGA TTACGTGC GTTTTTTGAA chrII:9606774-9606854 22 2.09e-04 TTTTCAGTGG TTACGTGC AATTTTGCAA chrII:12050765-12050845 17 2.38e-04 AGGAAACCGT CGACGTGA CATTCTTGAC chrIV:17101103-17101183 47 2.38e-04 TTCTCTCAAA TTACGTGA TTTTTCAAGG chrIV:365135-365215 22 2.38e-04 TCACAGAAGT TTACGTGA CTTCTCAGAG chrX:8017836-8017916 51 2.45e-04 CATAATCTTA GTCCGTGC ATGTTGAAAA chrX:13351484-13351564 55 2.68e-04 TTGACTTAGT GTGCGTGC ATCGTGATGT chrI:7581882-7581962 30 2.68e-04 ATCAAAGTGA GTGCGTGC AAAAAGCAAG chrV:3579347-3579427 6 2.68e-04 AGTGT GTGCGTGC AAAATGGGGA chrII:12625830-12625910 57 3.03e-04 TGTTTGGTCG CCACGTGA TCTTGCAAAA chrV:11822575-11822655 9 3.03e-04 CACGTTGA CCACGTGA TAAATTAGAA chrX:3537284-3537364 34 3.03e-04 TTTCTTCTCA ATCCGTGC CTTTTTGAAA chrII:9352808-9352888 8 3.26e-04 CAATAAT GGACGTGA CTATTTATTT chrX:3022835-3022915 20 3.75e-04 TGCCTAGTGA AGACGTGC GGAAAAGGAA chrX:9539452-9539532 29 5.06e-04 GTACACATGC CTACGTGT CATTCTGTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTACGTGM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9536130-9536210 9.7e-06 1_[+2]_71 chrI:5826647-5826727 9.7e-06 51_[+2]_21 chrI:4072834-4072914 9.7e-06 54_[+2]_18 chrX:4143509-4143589 9.7e-06 51_[+2]_21 chrV:7548189-7548269 9.7e-06 6_[+2]_66 chrV:17322674-17322754 9.7e-06 21_[+2]_51 chrII:9156474-9156554 9.7e-06 34_[+2]_38 chrIII:10380905-10380985 2.3e-05 46_[+2]_26 chrII:9160392-9160472 2.3e-05 44_[+2]_28 chrIII:13565095-13565175 2.3e-05 29_[+2]_43 chrI:9842480-9842560 2.3e-05 57_[+2]_15 chrX:14787351-14787431 2.3e-05 35_[+2]_37 chrII:7341866-7341946 2.3e-05 29_[+2]_43 chrI:2628683-2628763 2.3e-05 37_[+2]_35 chrIV:14219815-14219895 2.3e-05 10_[+2]_62 chrIV:9259869-9259949 2.3e-05 38_[+2]_34 chrIII:3875008-3875088 2.3e-05 13_[+2]_59 chrIV:12218403-12218483 2.3e-05 45_[+2]_27 chrIII:3922071-3922151 2.3e-05 22_[+2]_50 chrX:15222083-15222163 3.3e-05 70_[+2]_2 chrIV:8452383-8452463 3.3e-05 47_[+2]_25 chrX:2216437-2216517 3.3e-05 61_[+2]_11 chrI:2591587-2591667 3.3e-05 [+2]_72 chrX:1904318-1904398 4.6e-05 57_[+2]_15 chrIII:8926703-8926783 4.6e-05 56_[+2]_16 chrX:8257895-8257975 4.6e-05 59_[+2]_13 chrX:1620859-1620939 5.9e-05 50_[+2]_22 chrII:14494639-14494719 5.9e-05 16_[+2]_56 chrI:6569461-6569541 7.8e-05 14_[+2]_58 chrX:3055622-3055702 7.8e-05 51_[+2]_21 chrV:2140039-2140119 7.8e-05 30_[+2]_42 chrV:13047677-13047757 7.8e-05 4_[+2]_68 chrII:9154474-9154554 7.8e-05 31_[+2]_41 chrII:10693808-10693888 8.8e-05 6_[+2]_66 chrII:11705908-11705988 0.0001 40_[+2]_32 chrV:14002020-14002100 0.00011 35_[+2]_37 chrIV:826326-826406 0.00011 38_[+2]_34 chrV:8288597-8288677 0.00012 55_[+2]_17 chrIV:2618764-2618844 0.00012 56_[+2]_16 chrV:3777138-3777218 0.00012 42_[+2]_30 chrIII:8925678-8925758 0.00012 7_[+2]_65 chrII:11722332-11722412 0.00014 12_[+2]_60 chrX:8481919-8481999 0.00014 19_[+2]_53 chrV:10473076-10473156 0.00014 10_[+2]_62 chrIV:9215997-9216077 0.00014 49_[+2]_23 chrX:8088744-8088824 0.00016 70_[+2]_2 chrX:16793672-16793752 0.00016 57_[+2]_15 chrV:5813444-5813524 0.00016 47_[+2]_25 chrV:10179336-10179416 0.00016 35_[+2]_37 chrV:10876634-10876714 0.00016 18_[+2]_54 chrII:7394129-7394209 0.00016 56_[+2]_16 chrX:4139714-4139794 0.00016 3_[+2]_69 chrIV:484187-484267 0.00017 41_[+2]_31 chrIII:3908339-3908419 0.00018 26_[+2]_46 chrI:6375833-6375913 0.00021 30_[+2]_42 chrII:9606774-9606854 0.00021 21_[+2]_51 chrII:12050765-12050845 0.00024 16_[+2]_56 chrIV:17101103-17101183 0.00024 46_[+2]_26 chrIV:365135-365215 0.00024 21_[+2]_51 chrX:8017836-8017916 0.00024 50_[+2]_22 chrX:13351484-13351564 0.00027 54_[+2]_18 chrI:7581882-7581962 0.00027 29_[+2]_43 chrV:3579347-3579427 0.00027 5_[+2]_67 chrII:12625830-12625910 0.0003 56_[+2]_16 chrV:11822575-11822655 0.0003 8_[+2]_64 chrX:3537284-3537364 0.0003 33_[+2]_39 chrII:9352808-9352888 0.00033 7_[+2]_65 chrX:3022835-3022915 0.00037 19_[+2]_53 chrX:9539452-9539532 0.00051 28_[+2]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTACGTGM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VTACGTGM width=8 seqs=69 chrX:9536130-9536210 ( 2) CTACGTGC 1 chrI:5826647-5826727 ( 52) CTACGTGC 1 chrI:4072834-4072914 ( 55) CTACGTGC 1 chrX:4143509-4143589 ( 52) CTACGTGC 1 chrV:7548189-7548269 ( 7) CTACGTGC 1 chrV:17322674-17322754 ( 22) CTACGTGC 1 chrII:9156474-9156554 ( 35) CTACGTGC 1 chrIII:10380905-10380985 ( 47) CTACGTGA 1 chrII:9160392-9160472 ( 45) CTACGTGA 1 chrIII:13565095-13565175 ( 30) CTACGTGA 1 chrI:9842480-9842560 ( 58) CTACGTGA 1 chrX:14787351-14787431 ( 36) CTACGTGA 1 chrII:7341866-7341946 ( 30) CTACGTGA 1 chrI:2628683-2628763 ( 38) CTACGTGA 1 chrIV:14219815-14219895 ( 11) CTACGTGA 1 chrIV:9259869-9259949 ( 39) CTACGTGA 1 chrIII:3875008-3875088 ( 14) CTACGTGA 1 chrIV:12218403-12218483 ( 46) CTACGTGA 1 chrIII:3922071-3922151 ( 23) CTACGTGA 1 chrX:15222083-15222163 ( 71) GTACGTGC 1 chrIV:8452383-8452463 ( 48) GTACGTGC 1 chrX:2216437-2216517 ( 62) GTACGTGC 1 chrI:2591587-2591667 ( 1) GTACGTGC 1 chrX:1904318-1904398 ( 58) GTACGTGA 1 chrIII:8926703-8926783 ( 57) GTACGTGA 1 chrX:8257895-8257975 ( 60) GTACGTGA 1 chrX:1620859-1620939 ( 51) ATACGTGC 1 chrII:14494639-14494719 ( 17) ATACGTGC 1 chrI:6569461-6569541 ( 15) ATACGTGA 1 chrX:3055622-3055702 ( 52) ATACGTGA 1 chrV:2140039-2140119 ( 31) ATACGTGA 1 chrV:13047677-13047757 ( 5) ATACGTGA 1 chrII:9154474-9154554 ( 32) ATACGTGA 1 chrII:10693808-10693888 ( 7) CAACGTGC 1 chrII:11705908-11705988 ( 41) CAACGTGA 1 chrV:14002020-14002100 ( 36) GAACGTGC 1 chrIV:826326-826406 ( 39) GAACGTGC 1 chrV:8288597-8288677 ( 56) GAACGTGA 1 chrIV:2618764-2618844 ( 57) GAACGTGA 1 chrV:3777138-3777218 ( 43) GAACGTGA 1 chrIII:8925678-8925758 ( 8) GAACGTGA 1 chrII:11722332-11722412 ( 13) AAACGTGC 1 chrX:8481919-8481999 ( 20) AAACGTGC 1 chrV:10473076-10473156 ( 11) AAACGTGC 1 chrIV:9215997-9216077 ( 50) AAACGTGC 1 chrX:8088744-8088824 ( 71) AAACGTGA 1 chrX:16793672-16793752 ( 58) AAACGTGA 1 chrV:5813444-5813524 ( 48) AAACGTGA 1 chrV:10179336-10179416 ( 36) AAACGTGA 1 chrV:10876634-10876714 ( 19) AAACGTGA 1 chrII:7394129-7394209 ( 57) CTCCGTGC 1 chrX:4139714-4139794 ( 4) CTCCGTGC 1 chrIV:484187-484267 ( 42) CTCCGTGA 1 chrIII:3908339-3908419 ( 27) CTGCGTGC 1 chrI:6375833-6375913 ( 31) TTACGTGC 1 chrII:9606774-9606854 ( 22) TTACGTGC 1 chrII:12050765-12050845 ( 17) CGACGTGA 1 chrIV:17101103-17101183 ( 47) TTACGTGA 1 chrIV:365135-365215 ( 22) TTACGTGA 1 chrX:8017836-8017916 ( 51) GTCCGTGC 1 chrX:13351484-13351564 ( 55) GTGCGTGC 1 chrI:7581882-7581962 ( 30) GTGCGTGC 1 chrV:3579347-3579427 ( 6) GTGCGTGC 1 chrII:12625830-12625910 ( 57) CCACGTGA 1 chrV:11822575-11822655 ( 9) CCACGTGA 1 chrX:3537284-3537364 ( 34) ATCCGTGC 1 chrII:9352808-9352888 ( 8) GGACGTGA 1 chrX:3022835-3022915 ( 20) AGACGTGC 1 chrX:9539452-9539532 ( 29) CTACGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTACGTGM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.42015 E= 8.1e-030 -16 101 34 -234 -24 -285 -224 122 158 -153 -183 -1275 -1275 226 -1275 -1275 -1275 -1275 228 -1275 -1275 -1275 -1275 177 -1275 -1275 228 -1275 88 110 -1275 -433 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTACGTGM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 8.1e-030 0.260870 0.420290 0.260870 0.057971 0.246377 0.028986 0.043478 0.681159 0.869565 0.072464 0.057971 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.536232 0.449275 0.000000 0.014493 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTACGTGM MEME-2 regular expression -------------------------------------------------------------------------------- [CAG][TA]ACGTG[AC] -------------------------------------------------------------------------------- Time 8.86 secs. ******************************************************************************** ******************************************************************************** MOTIF AGACGCAG MEME-3 width = 8 sites = 7 llr = 81 E-value = 2.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:a:::a: pos.-specific C :::a:a:: probability G :a::a::a matrix T :::::::: bits 2.3 * *** * 2.1 * *** * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (16.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGACGCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:10891137-10891217 71 9.41e-06 TCGAGATGGA AGACGCAG GA chrI:3798656-3798736 31 9.41e-06 AGAGACTGGA AGACGCAG AGATAGAGAT chrIV:4022496-4022576 51 9.41e-06 ATAAGGACGG AGACGCAG AACAAAATGA chrIV:17333656-17333736 52 9.41e-06 TAGAGTGAAG AGACGCAG CTATTGAAGA chrII:1663664-1663744 63 9.41e-06 CAGTACTCAG AGACGCAG ACGGCAAAAT chrII:10693808-10693888 68 9.41e-06 AAATACGAAG AGACGCAG CGAGT chrIII:8926703-8926783 17 9.41e-06 AATGAGAGTG AGACGCAG ACGGCGAGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:10891137-10891217 9.4e-06 70_[+3]_2 chrI:3798656-3798736 9.4e-06 30_[+3]_42 chrIV:4022496-4022576 9.4e-06 50_[+3]_22 chrIV:17333656-17333736 9.4e-06 51_[+3]_21 chrII:1663664-1663744 9.4e-06 62_[+3]_10 chrII:10693808-10693888 9.4e-06 67_[+3]_5 chrIII:8926703-8926783 9.4e-06 16_[+3]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGACGCAG width=8 seqs=7 chrV:10891137-10891217 ( 71) AGACGCAG 1 chrI:3798656-3798736 ( 31) AGACGCAG 1 chrIV:4022496-4022576 ( 51) AGACGCAG 1 chrIV:17333656-17333736 ( 52) AGACGCAG 1 chrII:1663664-1663744 ( 63) AGACGCAG 1 chrII:10693808-10693888 ( 68) AGACGCAG 1 chrIII:8926703-8926783 ( 17) AGACGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1915 E= 2.4e+001 178 -945 -945 -945 -945 -945 228 -945 178 -945 -945 -945 -945 226 -945 -945 -945 -945 228 -945 -945 226 -945 -945 178 -945 -945 -945 -945 -945 228 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.4e+001 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 regular expression -------------------------------------------------------------------------------- AGACGCAG -------------------------------------------------------------------------------- Time 12.54 secs. ******************************************************************************** ******************************************************************************** MOTIF RMAAAAAA MEME-4 width = 8 sites = 56 llr = 419 E-value = 1.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RMAAAAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 44a9aa99 pos.-specific C 15::::1: probability G 61:1:::1 matrix T :::::::: bits 2.3 2.1 1.8 * ** 1.6 * ** Relative 1.4 ****** Entropy 1.1 ****** (10.8 bits) 0.9 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAAAAAA consensus AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMAAAAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1904318-1904398 28 2.61e-05 CAGTTTTGTG GCAAAAAA GTAATCCCTG chrIV:14613061-14613141 10 2.61e-05 TCCTATTCT GCAAAAAA CTTGTGTGTG chrX:8477161-8477241 40 2.61e-05 AAGGTTAAGA GCAAAAAA AGACTTGAGT chrV:14002020-14002100 49 2.61e-05 CGTGCGGTTT GCAAAAAA AAAACCTCCT chrIV:9260477-9260557 11 2.61e-05 AAAATAAGAC GCAAAAAA TAAAATACGA chrV:8285901-8285981 64 2.61e-05 TTGGCCGCAA GCAAAAAA AAAAACACT chrI:13576515-13576595 14 2.61e-05 CCCCGTCGAA GCAAAAAA AAATCAATAA chrIV:16422062-16422142 70 2.61e-05 CATTCTTTCT GCAAAAAA ATG chrIV:4400747-4400827 9 6.25e-05 aacacaca gaaaaaaa aaTGGTAAAT chrIV:17263928-17264008 1 6.25e-05 . GAAAAAAA GAGTGTCAAT chrII:11722332-11722412 27 6.25e-05 GTGCAAAAGT GAAAAAAA AAACAGAAGC chrII:9483516-9483596 45 6.25e-05 GAAGATTTTG GAAAAAAA CAGAAACAAT chrIV:8452383-8452463 33 6.25e-05 GGAACTCGGA GAAAAAAA TATAAATGTA chrX:15338353-15338433 72 6.25e-05 AAAAACGGGG GAAAAAAA T chrV:3784495-3784575 11 6.25e-05 TAAAAAATAG GAAAAAAA AACAGATTGA chrX:5209559-5209639 11 6.25e-05 TTGAAAAAAT GAAAAAAA AAAATACTTC chrIV:9508791-9508871 47 6.25e-05 TTTAGTGACA GAAAAAAA CGGCTAGAAT chrIV:484187-484267 2 6.25e-05 T GAAAAAAA CTAAAATAGA chrI:3798656-3798736 6 9.95e-05 ATGAA ACAAAAAA TGCCGCTAGA chrX:17068781-17068861 54 9.95e-05 TCACGTTCTC ACAAAAAA TCAAGGTGTT chrIV:1851050-1851130 22 9.95e-05 TGTGCATTGC ACAAAAAA CGGGTGAGCC chrX:3537284-3537364 3 9.95e-05 TA ACAAAAAA TCCCTACTCT chrX:6746860-6746940 54 9.95e-05 aaaaaaaaca acaaaaaa aaacaaaaca chrX:13351484-13351564 9 9.95e-05 TCTTGACG ACAAAAAA TACCCGAAAC chrX:325731-325811 16 9.95e-05 ACTTGCACGT ACAAAAAA ATCGATAAAA chrII:9482665-9482745 24 9.95e-05 GGGAAAGATA ACAAAAAA AATTGAGGAA chrIII:7722546-7722626 16 9.95e-05 AACACAGCGG ACAAAAAA ACGAACGGAA chrX:12454427-12454507 66 1.25e-04 ACTGTGGTTA GGAAAAAA TTGCGTG chrII:6025792-6025872 68 1.25e-04 ATACGCCTAC GGAAAAAA GTCTG chrX:12870230-12870310 73 1.25e-04 GAGCTATTGT GGAAAAAA chrX:4143509-4143589 16 1.77e-04 ACGTGCAGTT AAAAAAAA CAACAGCACC chrX:14495247-14495327 72 1.77e-04 AAAATAATTT AAAAAAAA G chrV:6666728-6666808 69 1.95e-04 TTGATTATAA GCAGAAAA GTCC chrX:2596784-2596864 19 2.40e-04 CTCCCTCCCC CCAAAAAA TTTTCTGTCT chrIV:16422296-16422376 31 2.40e-04 CCTCAGAATC CCAAAAAA ATAGAAATCC chrV:9078940-9079020 4 2.40e-04 TTA CCAAAAAA GTACACATGA chrI:3298337-3298417 72 2.77e-04 GTGAGTGAGG AGAAAAAA G chrX:8088744-8088824 52 2.95e-04 GGAAACGTAA GCAAAAAG ATCAAAAGTT chrIV:11349008-11349088 35 3.21e-04 TTCTACTCTA GAAGAAAA CACACTTGGA chrIV:2193698-2193778 69 3.21e-04 AGAGTTTAGA GAAGAAAA TTGC chrV:10891137-10891217 12 4.10e-04 CTGATGTAAC ACAGAAAA CGGGCAAACC chrIV:4216191-4216271 4 4.10e-04 TCT GAAAAACA GTCTAGCTGC chrI:6569461-6569541 54 4.10e-04 AAAATCTCAC ACAGAAAA CGTTTCTCAA chrIII:3104645-3104725 38 4.10e-04 AAATCGAAAA GAAAAACA ACAAGACAAT chrV:3579347-3579427 45 4.10e-04 GAATCTTGCC GAAAAACA CGTACGCTTC chrX:7867499-7867579 34 4.37e-04 AGACTTGTTC ACAAAACA GATGATTCGA chrX:14787351-14787431 47 4.37e-04 TACGTGAGAA ACAAAACA ATTTAGATTT chrX:16151470-16151550 13 4.37e-04 GATGCAATCA ACAAAACA AAAGTTAGCA chrV:8653525-8653605 31 4.63e-04 AACGGCTGGT GAAAAAAG TCTGTATGTC chrV:10472114-10472194 13 4.63e-04 ACGTAGACCT GAAAAAAG CGTGAAACCG chrIV:17101103-17101183 12 4.89e-04 AGGAAGATGA ACAAAAAG TGATCATTCA chrII:1500575-1500655 18 5.88e-04 AAAAGTTCCT CGAAAAAA TATTGAAAAT chrX:4139714-4139794 38 5.88e-04 GTCGCTTCTT CGAAAAAA GTTTTCATTG chrIII:3922071-3922151 59 5.88e-04 ATGAACCCTC AAAGAAAA CATTCTTATC chrIII:3318014-3318094 28 6.43e-04 TTTTAGGAAT GGAAAAAG TGCTGGAAAT chrII:7102447-7102527 72 7.57e-04 TGAGAAACGC AGAGAAAA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMAAAAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1904318-1904398 2.6e-05 27_[+4]_45 chrIV:14613061-14613141 2.6e-05 9_[+4]_63 chrX:8477161-8477241 2.6e-05 39_[+4]_33 chrV:14002020-14002100 2.6e-05 48_[+4]_24 chrIV:9260477-9260557 2.6e-05 10_[+4]_62 chrV:8285901-8285981 2.6e-05 63_[+4]_9 chrI:13576515-13576595 2.6e-05 13_[+4]_59 chrIV:16422062-16422142 2.6e-05 69_[+4]_3 chrIV:4400747-4400827 6.3e-05 8_[+4]_64 chrIV:17263928-17264008 6.3e-05 [+4]_72 chrII:11722332-11722412 6.3e-05 26_[+4]_46 chrII:9483516-9483596 6.3e-05 44_[+4]_28 chrIV:8452383-8452463 6.3e-05 32_[+4]_40 chrX:15338353-15338433 6.3e-05 71_[+4]_1 chrV:3784495-3784575 6.3e-05 10_[+4]_62 chrX:5209559-5209639 6.3e-05 10_[+4]_62 chrIV:9508791-9508871 6.3e-05 46_[+4]_26 chrIV:484187-484267 6.3e-05 1_[+4]_71 chrI:3798656-3798736 9.9e-05 5_[+4]_67 chrX:17068781-17068861 9.9e-05 53_[+4]_19 chrIV:1851050-1851130 9.9e-05 21_[+4]_51 chrX:3537284-3537364 9.9e-05 2_[+4]_70 chrX:6746860-6746940 9.9e-05 53_[+4]_19 chrX:13351484-13351564 9.9e-05 8_[+4]_64 chrX:325731-325811 9.9e-05 15_[+4]_57 chrII:9482665-9482745 9.9e-05 23_[+4]_49 chrIII:7722546-7722626 9.9e-05 15_[+4]_57 chrX:12454427-12454507 0.00013 65_[+4]_7 chrII:6025792-6025872 0.00013 67_[+4]_5 chrX:12870230-12870310 0.00013 72_[+4] chrX:4143509-4143589 0.00018 15_[+4]_57 chrX:14495247-14495327 0.00018 71_[+4]_1 chrV:6666728-6666808 0.0002 68_[+4]_4 chrX:2596784-2596864 0.00024 18_[+4]_54 chrIV:16422296-16422376 0.00024 30_[+4]_42 chrV:9078940-9079020 0.00024 3_[+4]_69 chrI:3298337-3298417 0.00028 71_[+4]_1 chrX:8088744-8088824 0.0003 51_[+4]_21 chrIV:11349008-11349088 0.00032 34_[+4]_38 chrIV:2193698-2193778 0.00032 68_[+4]_4 chrV:10891137-10891217 0.00041 11_[+4]_61 chrIV:4216191-4216271 0.00041 3_[+4]_69 chrI:6569461-6569541 0.00041 53_[+4]_19 chrIII:3104645-3104725 0.00041 37_[+4]_35 chrV:3579347-3579427 0.00041 44_[+4]_28 chrX:7867499-7867579 0.00044 33_[+4]_39 chrX:14787351-14787431 0.00044 46_[+4]_26 chrX:16151470-16151550 0.00044 12_[+4]_60 chrV:8653525-8653605 0.00046 30_[+4]_42 chrV:10472114-10472194 0.00046 12_[+4]_60 chrIV:17101103-17101183 0.00049 11_[+4]_61 chrII:1500575-1500655 0.00059 17_[+4]_55 chrX:4139714-4139794 0.00059 37_[+4]_35 chrIII:3922071-3922151 0.00059 58_[+4]_14 chrIII:3318014-3318094 0.00064 27_[+4]_45 chrII:7102447-7102527 0.00076 71_[+4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMAAAAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RMAAAAAA width=8 seqs=56 chrX:1904318-1904398 ( 28) GCAAAAAA 1 chrIV:14613061-14613141 ( 10) GCAAAAAA 1 chrX:8477161-8477241 ( 40) GCAAAAAA 1 chrV:14002020-14002100 ( 49) GCAAAAAA 1 chrIV:9260477-9260557 ( 11) GCAAAAAA 1 chrV:8285901-8285981 ( 64) GCAAAAAA 1 chrI:13576515-13576595 ( 14) GCAAAAAA 1 chrIV:16422062-16422142 ( 70) GCAAAAAA 1 chrIV:4400747-4400827 ( 9) GAAAAAAA 1 chrIV:17263928-17264008 ( 1) GAAAAAAA 1 chrII:11722332-11722412 ( 27) GAAAAAAA 1 chrII:9483516-9483596 ( 45) GAAAAAAA 1 chrIV:8452383-8452463 ( 33) GAAAAAAA 1 chrX:15338353-15338433 ( 72) GAAAAAAA 1 chrV:3784495-3784575 ( 11) GAAAAAAA 1 chrX:5209559-5209639 ( 11) GAAAAAAA 1 chrIV:9508791-9508871 ( 47) GAAAAAAA 1 chrIV:484187-484267 ( 2) GAAAAAAA 1 chrI:3798656-3798736 ( 6) ACAAAAAA 1 chrX:17068781-17068861 ( 54) ACAAAAAA 1 chrIV:1851050-1851130 ( 22) ACAAAAAA 1 chrX:3537284-3537364 ( 3) ACAAAAAA 1 chrX:6746860-6746940 ( 54) ACAAAAAA 1 chrX:13351484-13351564 ( 9) ACAAAAAA 1 chrX:325731-325811 ( 16) ACAAAAAA 1 chrII:9482665-9482745 ( 24) ACAAAAAA 1 chrIII:7722546-7722626 ( 16) ACAAAAAA 1 chrX:12454427-12454507 ( 66) GGAAAAAA 1 chrII:6025792-6025872 ( 68) GGAAAAAA 1 chrX:12870230-12870310 ( 73) GGAAAAAA 1 chrX:4143509-4143589 ( 16) AAAAAAAA 1 chrX:14495247-14495327 ( 72) AAAAAAAA 1 chrV:6666728-6666808 ( 69) GCAGAAAA 1 chrX:2596784-2596864 ( 19) CCAAAAAA 1 chrIV:16422296-16422376 ( 31) CCAAAAAA 1 chrV:9078940-9079020 ( 4) CCAAAAAA 1 chrI:3298337-3298417 ( 72) AGAAAAAA 1 chrX:8088744-8088824 ( 52) GCAAAAAG 1 chrIV:11349008-11349088 ( 35) GAAGAAAA 1 chrIV:2193698-2193778 ( 69) GAAGAAAA 1 chrV:10891137-10891217 ( 12) ACAGAAAA 1 chrIV:4216191-4216271 ( 4) GAAAAACA 1 chrI:6569461-6569541 ( 54) ACAGAAAA 1 chrIII:3104645-3104725 ( 38) GAAAAACA 1 chrV:3579347-3579427 ( 45) GAAAAACA 1 chrX:7867499-7867579 ( 34) ACAAAACA 1 chrX:14787351-14787431 ( 47) ACAAAACA 1 chrX:16151470-16151550 ( 13) ACAAAACA 1 chrV:8653525-8653605 ( 31) GAAAAAAG 1 chrV:10472114-10472194 ( 13) GAAAAAAG 1 chrIV:17101103-17101183 ( 12) ACAAAAAG 1 chrII:1500575-1500655 ( 18) CGAAAAAA 1 chrX:4139714-4139794 ( 38) CGAAAAAA 1 chrIII:3922071-3922151 ( 59) AAAGAAAA 1 chrIII:3318014-3318094 ( 28) GGAAAAAG 1 chrII:7102447-7102527 ( 72) AGAGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMAAAAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0167 E= 1.4e-002 29 -123 142 -1245 29 126 -53 -1245 178 -1245 -1245 -1245 159 -1245 -72 -1245 178 -1245 -1245 -1245 178 -1245 -1245 -1245 161 -96 -1245 -1245 164 -1245 -121 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMAAAAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 1.4e-002 0.357143 0.089286 0.553571 0.000000 0.357143 0.500000 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.892857 0.107143 0.000000 0.000000 0.910714 0.000000 0.089286 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMAAAAAA MEME-4 regular expression -------------------------------------------------------------------------------- [GA][CA]AAAAAA -------------------------------------------------------------------------------- Time 16.17 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTCTTC MEME-5 width = 8 sites = 29 llr = 248 E-value = 8.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTCTTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :1::91:7 probability G ::::12:3 matrix T a9aa:7a: bits 2.3 2.1 1.8 * *** * 1.6 * *** * Relative 1.4 ***** ** Entropy 1.1 ***** ** (12.3 bits) 0.9 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTCTTC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8479231-8479311 57 2.76e-05 CGCGGAAGCA TTTTCTTC GTCGTCTTTC chrX:3537284-3537364 23 2.76e-05 CCTACTCTCT TTTTCTTC TCAATCCGTG chrIV:13313402-13313482 57 2.76e-05 AATTGTTCCG TTTTCTTC TTCCACAACG chrV:10146969-10147049 42 2.76e-05 CATGCTCATT TTTTCTTC TCTGGAGCCG chrI:6373891-6373971 45 2.76e-05 ATTTCGCGGG TTTTCTTC CTCTAGAGAT chrI:12542242-12542322 9 2.76e-05 GAAAATTG TTTTCTTC ATACTTTCAC chrX:2939246-2939326 3 2.76e-05 CG TTTTCTTC CTTCTCAATC chrII:8483911-8483991 6 2.76e-05 GGGGT TTTTCTTC GCAAGATTCA chrII:9156474-9156554 55 2.76e-05 TTTAAGGGAT TTTTCTTC GTGGCAATAC chrX:11969727-11969807 18 2.76e-05 AAATGCAATA TTTTCTTC TTTCAATTTT chrIII:6935679-6935759 51 2.76e-05 GGCTTTGCTC TTTTCTTC TATTTCCATT chrI:7676305-7676385 51 5.49e-05 ATCCCAaata ttttcttg aatattttct chrII:14494639-14494719 69 5.49e-05 TTGTCATCAT TTTTCTTG GTAT chrIV:9215997-9216077 40 5.49e-05 CTTACTACTT TTTTCTTG AGAAACGTGC chrII:12261558-12261638 27 7.43e-05 ATTGTAGTGT TTTTCGTC ACTTTTTGAA chrI:4651021-4651101 73 9.40e-05 ACTGCACGTA TTTTCCTC chrIV:1851050-1851130 72 9.40e-05 GCTAATAGGA TTTTCCTC C chrX:2592977-2593057 27 9.40e-05 CACTACAATC TTTTCCTC AATGCCCCTT chrX:15222083-15222163 30 1.14e-04 AGAGGAGGTG TCTTCTTC CCCCGTATCG chrI:2857722-2857802 66 1.14e-04 GGGCCGCCCT TCTTCTTC GTTTTCC chrII:13732736-13732816 4 1.14e-04 ATT TCTTCTTC CGTAATAGTG chrX:325731-325811 52 1.33e-04 ATACATTCCC TTTTCGTG ACTGGCGTGT chrIII:3104645-3104725 18 1.33e-04 AAAACGCTAC TTTTCGTG ATAAATCGAA chrI:2591587-2591667 22 1.33e-04 TTTCCAACAT TTTTCGTG AACAACTGTC chrIV:2193698-2193778 9 1.33e-04 ACTAGAAA TTTTCGTG GTTTTGAACA chrIII:67211-67291 72 1.60e-04 CGTAGCGTGA TTTTGTTC A chrIV:9063711-9063791 20 1.60e-04 TATTTTGATC TTTTGTTC GAATGCTCAC chrII:10483068-10483148 49 1.60e-04 TCTGAATACA TTTTGTTC TGTTTCCCGT chrX:4141305-4141385 32 1.80e-04 TGTTTGTTAG TTTTCCTG AACAATGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8479231-8479311 2.8e-05 56_[+5]_16 chrX:3537284-3537364 2.8e-05 22_[+5]_50 chrIV:13313402-13313482 2.8e-05 56_[+5]_16 chrV:10146969-10147049 2.8e-05 41_[+5]_31 chrI:6373891-6373971 2.8e-05 44_[+5]_28 chrI:12542242-12542322 2.8e-05 8_[+5]_64 chrX:2939246-2939326 2.8e-05 2_[+5]_70 chrII:8483911-8483991 2.8e-05 5_[+5]_67 chrII:9156474-9156554 2.8e-05 54_[+5]_18 chrX:11969727-11969807 2.8e-05 17_[+5]_55 chrIII:6935679-6935759 2.8e-05 50_[+5]_22 chrI:7676305-7676385 5.5e-05 50_[+5]_22 chrII:14494639-14494719 5.5e-05 68_[+5]_4 chrIV:9215997-9216077 5.5e-05 39_[+5]_33 chrII:12261558-12261638 7.4e-05 26_[+5]_46 chrI:4651021-4651101 9.4e-05 72_[+5] chrIV:1851050-1851130 9.4e-05 71_[+5]_1 chrX:2592977-2593057 9.4e-05 26_[+5]_46 chrX:15222083-15222163 0.00011 29_[+5]_43 chrI:2857722-2857802 0.00011 65_[+5]_7 chrII:13732736-13732816 0.00011 3_[+5]_69 chrX:325731-325811 0.00013 51_[+5]_21 chrIII:3104645-3104725 0.00013 17_[+5]_55 chrI:2591587-2591667 0.00013 21_[+5]_51 chrIV:2193698-2193778 0.00013 8_[+5]_64 chrIII:67211-67291 0.00016 71_[+5]_1 chrIV:9063711-9063791 0.00016 19_[+5]_53 chrII:10483068-10483148 0.00016 48_[+5]_24 chrX:4141305-4141385 0.00018 31_[+5]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTCTTC width=8 seqs=29 chrX:8479231-8479311 ( 57) TTTTCTTC 1 chrX:3537284-3537364 ( 23) TTTTCTTC 1 chrIV:13313402-13313482 ( 57) TTTTCTTC 1 chrV:10146969-10147049 ( 42) TTTTCTTC 1 chrI:6373891-6373971 ( 45) TTTTCTTC 1 chrI:12542242-12542322 ( 9) TTTTCTTC 1 chrX:2939246-2939326 ( 3) TTTTCTTC 1 chrII:8483911-8483991 ( 6) TTTTCTTC 1 chrII:9156474-9156554 ( 55) TTTTCTTC 1 chrX:11969727-11969807 ( 18) TTTTCTTC 1 chrIII:6935679-6935759 ( 51) TTTTCTTC 1 chrI:7676305-7676385 ( 51) TTTTCTTG 1 chrII:14494639-14494719 ( 69) TTTTCTTG 1 chrIV:9215997-9216077 ( 40) TTTTCTTG 1 chrII:12261558-12261638 ( 27) TTTTCGTC 1 chrI:4651021-4651101 ( 73) TTTTCCTC 1 chrIV:1851050-1851130 ( 72) TTTTCCTC 1 chrX:2592977-2593057 ( 27) TTTTCCTC 1 chrX:15222083-15222163 ( 30) TCTTCTTC 1 chrI:2857722-2857802 ( 66) TCTTCTTC 1 chrII:13732736-13732816 ( 4) TCTTCTTC 1 chrX:325731-325811 ( 52) TTTTCGTG 1 chrIII:3104645-3104725 ( 18) TTTTCGTG 1 chrI:2591587-2591667 ( 22) TTTTCGTG 1 chrIV:2193698-2193778 ( 9) TTTTCGTG 1 chrIII:67211-67291 ( 72) TTTTGTTC 1 chrIV:9063711-9063791 ( 20) TTTTGTTC 1 chrII:10483068-10483148 ( 49) TTTTGTTC 1 chrX:4141305-4141385 ( 32) TTTTCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.93691 E= 8.9e+000 -1150 -1150 -1150 177 -1150 -101 -1150 161 -1150 -1150 -1150 177 -1150 -1150 -1150 177 -1150 210 -99 -1150 -1150 -60 -26 123 -1150 -1150 -1150 177 -1150 179 42 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 8.9e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.103448 0.000000 0.896552 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.896552 0.103448 0.000000 0.000000 0.137931 0.172414 0.689655 0.000000 0.000000 0.000000 1.000000 0.000000 0.724138 0.275862 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTC MEME-5 regular expression -------------------------------------------------------------------------------- TTTTCTT[CG] -------------------------------------------------------------------------------- Time 19.70 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:7102447-7102527 6.23e-03 80 chrIII:6935679-6935759 5.53e-03 50_[+5(2.76e-05)]_22 chrX:11969727-11969807 5.42e-02 17_[+5(2.76e-05)]_55 chrX:16151470-16151550 2.50e-01 80 chrII:13732736-13732816 2.44e-03 80 chrV:3771913-3771993 8.50e-01 80 chrX:3022835-3022915 1.00e-01 80 chrII:9154474-9154554 1.63e-02 31_[+2(7.82e-05)]_41 chrII:8931525-8931605 6.85e-02 80 chrV:3579347-3579427 2.92e-02 80 chrIII:3922071-3922151 2.53e-02 22_[+2(2.32e-05)]_50 chrV:10469335-10469415 1.86e-01 80 chrIV:12218403-12218483 2.10e-02 45_[+2(2.32e-05)]_27 chrIV:9215997-9216077 1.05e-02 39_[+5(5.49e-05)]_33 chrIII:8925678-8925758 4.78e-02 80 chrII:8451574-8451654 5.98e-02 72_[+1(9.54e-05)] chrV:10474187-10474267 6.87e-02 80 chrX:16772297-16772377 6.35e-03 14_[+5(9.40e-05)]_43_[+1(3.67e-05)]_\ 7 chrII:9156474-9156554 6.84e-04 16_[+2(4.60e-05)]_10_[+2(9.68e-06)]_\ 12_[+5(2.76e-05)]_18 chrIV:16422062-16422142 3.35e-03 69_[+4(2.61e-05)]_3 chrIII:3875008-3875088 2.36e-03 13_[+2(2.32e-05)]_59 chrI:6181167-6181247 9.54e-01 80 chrV:10464900-10464980 3.83e-01 80 chrX:7661333-7661413 8.92e-03 53_[+1(2.31e-05)]_19 chrIV:9259869-9259949 1.28e-02 38_[+2(2.32e-05)]_34 chrIV:484187-484267 7.46e-03 1_[+4(6.25e-05)]_71 chrX:1337984-1338064 9.33e-01 80 chrX:4139714-4139794 8.42e-04 80 chrX:6729185-6729265 2.21e-01 80 chrIII:13550079-13550159 2.23e-03 63_[+1(2.31e-05)]_9 chrIV:9508791-9508871 1.18e-02 46_[+4(6.25e-05)]_26 chrX:8257895-8257975 2.72e-02 59_[+2(4.60e-05)]_13 chrIV:4478584-4478664 1.31e-02 53_[+1(2.31e-05)]_19 chrV:10876634-10876714 3.24e-01 80 chrV:1038207-1038287 4.68e-01 80 chrV:2050317-2050397 7.97e-01 80 chrI:3298337-3298417 2.77e-02 15_[+4(9.95e-05)]_57 chrIV:365135-365215 3.48e-02 80 chrIII:7463776-7463856 9.63e-02 80 chrII:10483068-10483148 3.73e-02 80 chrI:11932209-11932289 4.16e-01 80 chrI:13576515-13576595 1.97e-04 13_[+4(2.61e-05)]_59 chrX:7445941-7446021 2.46e-01 80 chrIII:7643246-7643326 9.52e-01 80 chrIII:7722546-7722626 4.35e-03 15_[+4(9.95e-05)]_21_[+1(9.54e-05)]_\ 28 chrII:9352808-9352888 6.48e-02 80 chrX:2592977-2593057 2.97e-01 26_[+5(9.40e-05)]_46 chrII:9606774-9606854 8.94e-02 80 chrX:14495247-14495327 1.43e-01 80 chrX:17481734-17481814 2.62e-02 46_[+1(2.31e-05)]_26 chrIII:6168991-6169071 8.13e-02 80 chrII:8483911-8483991 2.67e-04 5_[+5(2.76e-05)]_67 chrII:9482665-9482745 1.02e-02 23_[+4(9.95e-05)]_49 chrX:5209559-5209639 1.92e-03 10_[+4(6.25e-05)]_62 chrX:2939246-2939326 2.34e-04 2_[+5(2.76e-05)]_22_[+1(9.54e-06)]_\ 40 chrII:12052287-12052367 9.25e-02 80 chrII:13627176-13627256 2.02e-01 80 chrV:6666728-6666808 1.96e-02 80 chrI:6375833-6375913 1.01e-01 80 chrX:8017836-8017916 2.34e-02 80 chrIII:6871813-6871893 9.69e-02 80 chrIII:8926703-8926783 3.56e-04 16_[+3(9.41e-06)]_32_[+2(4.60e-05)]_\ 16 chrIV:14219815-14219895 1.65e-02 10_[+2(2.32e-05)]_62 chrIII:6962261-6962341 5.15e-01 80 chrII:12615572-12615652 1.50e-01 16_[+1(7.51e-05)]_56 chrV:14003930-14004010 6.48e-02 60_[+1(9.54e-05)]_12 chrIV:826326-826406 1.51e-04 44_[+4(2.61e-05)]_28 chrIII:11379223-11379303 1.48e-01 80 chrII:14495546-14495626 7.89e-01 80 chrIV:7390560-7390640 6.65e-01 80 chrIII:7358820-7358900 6.23e-01 80 chrI:2628683-2628763 3.16e-02 37_[+2(2.32e-05)]_35 chrII:11705908-11705988 8.83e-02 80 chrV:3777138-3777218 4.34e-02 80 chrIV:14050568-14050648 5.91e-01 80 chrII:12261558-12261638 9.00e-02 26_[+5(7.43e-05)]_46 chrI:10174884-10174964 5.19e-02 36_[+1(7.51e-05)]_36 chrI:12542242-12542322 8.26e-03 8_[+5(2.76e-05)]_64 chrV:10179336-10179416 2.76e-02 80 chrV:10473076-10473156 7.15e-03 80 chrII:12380440-12380520 6.13e-01 80 chrIV:2193698-2193778 4.71e-03 80 chrX:14568511-14568591 1.32e-01 80 chrII:4941778-4941858 1.17e-01 33_[+1(5.60e-05)]_39 chrI:2591587-2591667 7.81e-03 [+2(3.27e-05)]_72 chrIII:13768440-13768520 4.40e-02 53_[+1(9.54e-05)]_19 chrX:14243702-14243782 5.91e-02 80 chrIV:16420184-16420264 2.47e-01 80 chrV:17322674-17322754 3.68e-02 21_[+2(9.68e-06)]_51 chrV:13047677-13047757 1.37e-01 4_[+2(7.82e-05)]_68 chrIV:2618764-2618844 8.62e-03 80 chrII:15207733-15207813 7.69e-01 80 chrV:8285901-8285981 8.79e-02 21_[+4(9.95e-05)]_34_[+4(2.61e-05)]_\ 9 chrIV:17101103-17101183 1.71e-02 80 chrII:14494639-14494719 8.54e-04 16_[+2(5.95e-05)]_44_[+5(5.49e-05)]_\ 4 chrIV:13396540-13396620 2.83e-03 60_[+1(3.67e-05)]_12 chrX:5355452-5355532 1.21e-01 80 chrX:12198486-12198566 6.87e-01 80 chrI:7581882-7581962 4.97e-02 80 chrV:2140039-2140119 1.05e-01 30_[+2(7.82e-05)]_42 chrV:20710306-20710386 4.48e-01 80 chrV:10472114-10472194 3.76e-02 80 chrI:6373891-6373971 2.48e-02 44_[+5(2.76e-05)]_28 chrI:3867358-3867438 2.85e-01 80 chrX:17627526-17627606 5.76e-01 80 chrI:2666705-2666785 2.92e-01 80 chrX:7636264-7636344 1.84e-01 80 chrV:20161972-20162052 6.77e-02 61_[+1(2.31e-05)]_11 chrI:9279475-9279555 1.50e-02 63_[+1(9.54e-06)]_9 chrIV:9260477-9260557 2.03e-04 10_[+4(2.61e-05)]_62 chrII:7394129-7394209 1.50e-02 80 chrX:2216437-2216517 1.83e-03 67_[+4(2.61e-05)]_5 chrII:7341866-7341946 4.01e-02 29_[+2(2.32e-05)]_43 chrV:3784495-3784575 6.67e-02 10_[+4(6.25e-05)]_62 chrIII:3908339-3908419 7.98e-02 80 chrV:14002020-14002100 7.84e-04 3_[+4(9.95e-05)]_37_[+4(2.61e-05)]_\ 24 chrIV:9063711-9063791 7.26e-03 80 chrV:5889832-5889912 2.18e-01 80 chrV:2731239-2731319 2.41e-01 80 chrV:7548189-7548269 3.47e-02 6_[+2(9.68e-06)]_24_[+2(3.27e-05)]_\ 15_[+2(2.32e-05)]_11 chrIII:13566141-13566221 3.47e-01 80 chrX:3055622-3055702 9.94e-02 51_[+2(7.82e-05)]_21 chrX:8477161-8477241 3.17e-03 39_[+4(2.61e-05)]_16_[+1(9.54e-05)]_\ 9 chrII:10693808-10693888 9.34e-05 6_[+2(8.78e-05)]_53_[+3(9.41e-06)]_\ 5 chrX:15338353-15338433 6.67e-03 71_[+4(6.25e-05)]_1 chrV:5813444-5813524 2.03e-01 80 chrV:9078940-9079020 2.86e-01 80 chrX:17628478-17628558 2.37e-01 80 chrV:10146969-10147049 1.33e-02 41_[+5(2.76e-05)]_31 chrX:3729077-3729157 5.42e-01 80 chrV:8288597-8288677 4.21e-02 80 chrIV:16422296-16422376 1.94e-01 80 chrIII:3104645-3104725 3.42e-03 80 chrII:10300549-10300629 4.90e-02 80 chrX:12870230-12870310 1.88e-02 80 chrX:8470510-8470590 7.63e-02 80 chrII:1663664-1663744 1.30e-02 62_[+3(9.41e-06)]_10 chrX:8481919-8481999 8.28e-03 80 chrV:5820592-5820672 9.46e-01 80 chrX:13360017-13360097 1.98e-02 45_[+1(2.31e-05)]_27 chrX:4142750-4142830 1.01e-02 4_[+1(2.31e-05)]_68 chrIII:3117128-3117208 1.27e-01 13_[+1(3.67e-05)]_59 chrII:9155238-9155318 2.56e-01 80 chrV:10468383-10468463 4.93e-02 80 chrII:4728862-4728942 6.83e-01 80 chrV:20903337-20903417 1.48e-01 19_[+3(7.81e-05)]_53 chrX:14787351-14787431 1.21e-03 35_[+2(2.32e-05)]_37 chrI:9842480-9842560 4.34e-02 57_[+2(2.32e-05)]_15 chrX:11964764-11964844 5.71e-01 80 chrV:10590332-10590412 9.28e-01 80 chrIV:13313402-13313482 4.77e-04 56_[+5(2.76e-05)]_8_[+1(9.54e-05)] chrIV:8453338-8453418 1.88e-01 80 chrI:2654651-2654731 2.22e-01 80 chrII:12050765-12050845 1.17e-01 80 chrI:9317085-9317165 8.14e-02 80 chrX:13106588-13106668 1.98e-02 46_[+1(3.67e-05)]_26 chrX:6665673-6665753 4.50e-01 80 chrIV:8452383-8452463 1.07e-04 32_[+4(6.25e-05)]_7_[+2(3.27e-05)]_\ 25 chrX:4143509-4143589 2.29e-03 51_[+2(9.68e-06)]_21 chrIII:2756868-2756948 6.93e-01 80 chrIV:3647717-3647797 1.60e-01 80 chrX:9539452-9539532 1.81e-01 80 chrIII:13565095-13565175 5.52e-03 29_[+2(2.32e-05)]_43 chrX:325731-325811 6.34e-05 7_[+1(2.31e-05)]_[+4(9.95e-05)]_57 chrII:8484657-8484737 9.97e-01 80 chrII:13065363-13065443 3.38e-03 12_[+1(5.60e-05)]_60 chrII:9483516-9483596 2.59e-01 44_[+4(6.25e-05)]_28 chrX:5205696-5205776 3.58e-01 80 chrX:915639-915719 1.84e-01 9_[+1(9.54e-05)]_63 chrII:11722332-11722412 1.19e-02 26_[+4(6.25e-05)]_46 chrIII:67211-67291 9.56e-04 56_[+1(2.31e-05)]_16 chrX:17631845-17631925 6.61e-01 80 chrX:16346558-16346638 9.87e-02 38_[+1(2.31e-05)]_34 chrII:9160392-9160472 4.51e-03 44_[+2(2.32e-05)]_28 chrX:16793672-16793752 3.36e-02 80 chrX:13351484-13351564 8.97e-03 8_[+4(9.95e-05)]_64 chrIV:17263928-17264008 8.16e-02 [+4(6.25e-05)]_72 chrX:14788804-14788884 7.97e-01 80 chrI:6569461-6569541 3.90e-03 14_[+2(7.82e-05)]_58 chrII:8931737-8931817 6.71e-01 80 chrIII:3318014-3318094 3.49e-01 80 chrIV:14613061-14613141 3.52e-02 9_[+4(2.61e-05)]_63 chrX:6746860-6746940 1.46e-01 53_[+4(9.95e-05)]_19 chrII:11050050-11050130 5.35e-01 80 chrII:13467974-13468054 8.05e-01 80 chrI:4072834-4072914 1.43e-03 54_[+2(9.68e-06)]_18 chrIV:17333656-17333736 4.45e-02 51_[+3(9.41e-06)]_21 chrX:8088744-8088824 2.39e-02 80 chrII:6025792-6025872 4.86e-02 80 chrIV:14606667-14606747 4.45e-01 80 chrV:10247158-10247238 2.84e-01 80 chrX:10238502-10238582 3.26e-01 80 chrX:15365972-15366052 6.73e-01 80 chrX:12436636-12436716 1.38e-01 80 chrIV:429067-429147 9.57e-01 80 chrX:3108645-3108725 4.68e-01 80 chrX:7867499-7867579 2.31e-01 80 chrII:11472662-11472742 4.62e-01 80 chrV:3344220-3344300 7.24e-01 80 chrX:4141305-4141385 5.82e-02 80 chrIV:4216191-4216271 4.97e-02 80 chrX:3537284-3537364 2.12e-04 2_[+4(9.95e-05)]_12_[+5(2.76e-05)]_\ 50 chrIV:4400747-4400827 1.32e-02 8_[+4(6.25e-05)]_64 chrV:10731160-10731240 2.96e-01 80 chrX:2596784-2596864 1.05e-02 80 chrIV:14883937-14884017 8.68e-01 80 chrV:8653525-8653605 4.79e-03 69_[+1(3.67e-05)]_3 chrIII:6170222-6170302 5.25e-01 80 chrIV:10511556-10511636 7.28e-02 80 chrII:4888992-4889072 3.43e-02 80 chrX:7952445-7952525 9.35e-01 80 chrIV:4022496-4022576 3.35e-03 50_[+3(9.41e-06)]_22 chrI:5826647-5826727 1.10e-02 51_[+2(9.68e-06)]_21 chrV:13263203-13263283 9.79e-01 80 chrI:8866830-8866910 2.03e-01 80 chrV:6244867-6244947 3.84e-01 80 chrII:13638633-13638713 2.44e-01 80 chrIII:5081181-5081261 1.38e-01 80 chrII:8449890-8449970 4.75e-01 80 chrIV:1851050-1851130 7.58e-03 21_[+4(9.95e-05)]_42_[+5(9.40e-05)]_\ 1 chrIV:11349008-11349088 3.67e-01 80 chrIII:10380905-10380985 2.33e-02 46_[+2(2.32e-05)]_26 chrV:9080055-9080135 2.66e-01 80 chrX:17068781-17068861 1.48e-03 22_[+1(3.67e-05)]_23_[+4(9.95e-05)]_\ 19 chrII:6942887-6942967 1.52e-01 80 chrI:3798656-3798736 5.49e-03 5_[+4(9.95e-05)]_17_[+3(9.41e-06)]_\ 42 chrII:8485728-8485808 8.49e-03 11_[+1(5.60e-05)]_61 chrX:9536130-9536210 1.01e-03 1_[+2(9.68e-06)]_71 chrII:9157257-9157337 1.59e-01 80 chrI:7676305-7676385 1.94e-01 50_[+5(5.49e-05)]_22 chrX:12454427-12454507 1.06e-01 80 chrV:10891137-10891217 5.51e-03 70_[+3(9.41e-06)]_2 chrII:1500575-1500655 3.67e-01 80 chrX:1904318-1904398 6.48e-04 27_[+4(2.61e-05)]_22_[+2(4.60e-05)]_\ 15 chrV:11822575-11822655 1.51e-02 80 chrII:4552251-4552331 2.29e-01 80 chrI:4651021-4651101 4.16e-03 72_[+5(9.40e-05)] chrI:2857722-2857802 1.01e-01 80 chrII:12622317-12622397 2.97e-02 80 chrX:1620859-1620939 2.47e-02 50_[+2(5.95e-05)]_22 chrV:15666919-15666999 9.79e-01 80 chrII:12625830-12625910 2.59e-02 80 chrX:8479231-8479311 2.28e-02 56_[+5(2.76e-05)]_16 chrIII:3954331-3954411 2.99e-03 47_[+1(3.67e-05)]_25 chrV:4630223-4630303 5.05e-01 80 chrIV:9051808-9051888 3.32e-01 80 chrX:15222083-15222163 3.66e-04 70_[+2(3.27e-05)]_2 chrX:864507-864587 9.57e-01 80 chrIV:12196773-12196853 8.88e-02 80 chrX:10051802-10051882 3.76e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n06.farnam.hpc.yale.internal ********************************************************************************