******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ham-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:4695130-4695210 1.0000 80 chrX:4553202-4553282 1.0000 80 chrX:5098578-5098658 1.0000 80 chrII:6713171-6713251 1.0000 80 chrII:3912526-3912606 1.0000 80 chrV:8796470-8796550 1.0000 80 chrII:12960381-12960461 1.0000 80 chrV:1164360-1164440 1.0000 80 chrX:4554122-4554202 1.0000 80 chrII:8856680-8856760 1.0000 80 chrIV:14044066-14044146 1.0000 80 chrII:4155247-4155327 1.0000 80 chrIV:10576642-10576722 1.0000 80 chrX:4555335-4555415 1.0000 80 chrI:14663278-14663358 1.0000 80 chrIII:8063683-8063763 1.0000 80 chrI:8999739-8999819 1.0000 80 chrIII:8602260-8602340 1.0000 80 chrX:3094497-3094577 1.0000 80 chrX:4549063-4549143 1.0000 80 chrV:13610009-13610089 1.0000 80 chrX:4556187-4556267 1.0000 80 chrIV:8853631-8853711 1.0000 80 chrI:8680305-8680385 1.0000 80 chrIII:8597005-8597085 1.0000 80 chrIII:2647364-2647444 1.0000 80 chrIV:3221345-3221425 1.0000 80 chrI:527587-527667 1.0000 80 chrX:5994167-5994247 1.0000 80 chrIV:3455585-3455665 1.0000 80 chrX:16029098-16029178 1.0000 80 chrV:1848767-1848847 1.0000 80 chrIV:14390480-14390560 1.0000 80 chrX:342155-342235 1.0000 80 chrII:12082234-12082314 1.0000 80 chrIV:497314-497394 1.0000 80 chrIII:3758922-3759002 1.0000 80 chrX:5701589-5701669 1.0000 80 chrIV:11883723-11883803 1.0000 80 chrIII:5436489-5436569 1.0000 80 chrI:10404556-10404636 1.0000 80 chrI:7755549-7755629 1.0000 80 chrX:8933695-8933775 1.0000 80 chrIV:4235512-4235592 1.0000 80 chrI:5746526-5746606 1.0000 80 chrI:746257-746337 1.0000 80 chrIII:13560872-13560952 1.0000 80 chrX:4395266-4395346 1.0000 80 chrII:8641334-8641414 1.0000 80 chrI:7213590-7213670 1.0000 80 chrI:5780948-5781028 1.0000 80 chrI:4787830-4787910 1.0000 80 chrV:20843945-20844025 1.0000 80 chrII:12436881-12436961 1.0000 80 chrV:2826109-2826189 1.0000 80 chrIII:8599145-8599225 1.0000 80 chrIV:5104408-5104488 1.0000 80 chrIII:2121103-2121183 1.0000 80 chrIII:1718927-1719007 1.0000 80 chrX:9989041-9989121 1.0000 80 chrX:16626970-16627050 1.0000 80 chrX:10383018-10383098 1.0000 80 chrIII:8839982-8840062 1.0000 80 chrX:3596525-3596605 1.0000 80 chrII:4152190-4152270 1.0000 80 chrX:11003650-11003730 1.0000 80 chrX:2874767-2874847 1.0000 80 chrV:14806550-14806630 1.0000 80 chrIII:711205-711285 1.0000 80 chrX:4809449-4809529 1.0000 80 chrX:6066767-6066847 1.0000 80 chrX:2152200-2152280 1.0000 80 chrII:14571937-14572017 1.0000 80 chrIV:1221354-1221434 1.0000 80 chrII:536517-536597 1.0000 80 chrX:7937119-7937199 1.0000 80 chrIV:6996339-6996419 1.0000 80 chrIII:11558390-11558470 1.0000 80 chrII:337528-337608 1.0000 80 chrII:1154073-1154153 1.0000 80 chrIV:11719355-11719435 1.0000 80 chrII:10621067-10621147 1.0000 80 chrIV:8051948-8052028 1.0000 80 chrIII:1053187-1053267 1.0000 80 chrV:4355195-4355275 1.0000 80 chrII:8749265-8749345 1.0000 80 chrI:6279382-6279462 1.0000 80 chrX:4791802-4791882 1.0000 80 chrX:692998-693078 1.0000 80 chrII:14567985-14568065 1.0000 80 chrV:9395283-9395363 1.0000 80 chrX:10429421-10429501 1.0000 80 chrIII:39675-39755 1.0000 80 chrIII:7926106-7926186 1.0000 80 chrV:6934857-6934937 1.0000 80 chrII:8529450-8529530 1.0000 80 chrX:5060693-5060773 1.0000 80 chrII:13107600-13107680 1.0000 80 chrII:723-803 1.0000 80 chrIII:12015389-12015469 1.0000 80 chrX:11003855-11003935 1.0000 80 chrX:14577744-14577824 1.0000 80 chrI:530425-530505 1.0000 80 chrX:2928000-2928080 1.0000 80 chrX:9494815-9494895 1.0000 80 chrI:11540469-11540549 1.0000 80 chrI:11645914-11645994 1.0000 80 chrX:3319475-3319555 1.0000 80 chrV:14426144-14426224 1.0000 80 chrII:4277792-4277872 1.0000 80 chrII:2990304-2990384 1.0000 80 chrIII:1404498-1404578 1.0000 80 chrV:1021603-1021683 1.0000 80 chrV:11222055-11222135 1.0000 80 chrX:15487308-15487388 1.0000 80 chrIV:12816734-12816814 1.0000 80 chrV:19231304-19231384 1.0000 80 chrX:5024496-5024576 1.0000 80 chrIV:11584875-11584955 1.0000 80 chrIV:1632787-1632867 1.0000 80 chrI:9129780-9129860 1.0000 80 chrII:4103976-4104056 1.0000 80 chrV:18613286-18613366 1.0000 80 chrV:6970242-6970322 1.0000 80 chrX:10318564-10318644 1.0000 80 chrI:8357347-8357427 1.0000 80 chrIII:12800719-12800799 1.0000 80 chrX:17413993-17414073 1.0000 80 chrX:2713122-2713202 1.0000 80 chrII:9645123-9645203 1.0000 80 chrII:13053663-13053743 1.0000 80 chrX:4586293-4586373 1.0000 80 chrX:2583458-2583538 1.0000 80 chrX:8426292-8426372 1.0000 80 chrX:4552283-4552363 1.0000 80 chrII:4098937-4099017 1.0000 80 chrIV:17453174-17453254 1.0000 80 chrV:6542259-6542339 1.0000 80 chrV:6105460-6105540 1.0000 80 chrX:4513771-4513851 1.0000 80 chrIV:1286171-1286251 1.0000 80 chrI:775815-775895 1.0000 80 chrV:19623687-19623767 1.0000 80 chrV:8044107-8044187 1.0000 80 chrV:19429780-19429860 1.0000 80 chrIV:3867237-3867317 1.0000 80 chrIV:14391923-14392003 1.0000 80 chrX:8285484-8285564 1.0000 80 chrX:13526660-13526740 1.0000 80 chrIV:11567341-11567421 1.0000 80 chrII:14678389-14678469 1.0000 80 chrIV:16400532-16400612 1.0000 80 chrIII:9642295-9642375 1.0000 80 chrII:7678662-7678742 1.0000 80 chrI:4516286-4516366 1.0000 80 chrI:6436613-6436693 1.0000 80 chrIII:12131968-12132048 1.0000 80 chrI:978966-979046 1.0000 80 chrX:11065036-11065116 1.0000 80 chrIII:11468010-11468090 1.0000 80 chrV:7247196-7247276 1.0000 80 chrX:4551098-4551178 1.0000 80 chrII:10203891-10203971 1.0000 80 chrIV:53202-53282 1.0000 80 chrII:3930173-3930253 1.0000 80 chrIV:12403614-12403694 1.0000 80 chrI:10821430-10821510 1.0000 80 chrIV:9983114-9983194 1.0000 80 chrII:183299-183379 1.0000 80 chrV:18565828-18565908 1.0000 80 chrV:17996303-17996383 1.0000 80 chrII:6409273-6409353 1.0000 80 chrIV:4437945-4438025 1.0000 80 chrIV:12999051-12999131 1.0000 80 chrI:11782403-11782483 1.0000 80 chrIII:2414145-2414225 1.0000 80 chrX:9101300-9101380 1.0000 80 chrI:1256155-1256235 1.0000 80 chrV:12874832-12874912 1.0000 80 chrX:4961679-4961759 1.0000 80 chrII:9266375-9266455 1.0000 80 chrIII:8602463-8602543 1.0000 80 chrX:15713328-15713408 1.0000 80 chrIV:12617383-12617463 1.0000 80 chrIII:1054311-1054391 1.0000 80 chrII:14611578-14611658 1.0000 80 chrIII:5942244-5942324 1.0000 80 chrX:11057219-11057299 1.0000 80 chrII:10341772-10341852 1.0000 80 chrX:2330750-2330830 1.0000 80 chrI:14524270-14524350 1.0000 80 chrIV:6785342-6785422 1.0000 80 chrX:15310404-15310484 1.0000 80 chrX:11036465-11036545 1.0000 80 chrX:457523-457603 1.0000 80 chrIV:14070669-14070749 1.0000 80 chrV:19543696-19543776 1.0000 80 chrIV:11211732-11211812 1.0000 80 chrIII:647463-647543 1.0000 80 chrI:7213789-7213869 1.0000 80 chrIII:2401658-2401738 1.0000 80 chrIV:8170458-8170538 1.0000 80 chrIII:8504485-8504565 1.0000 80 chrII:9075005-9075085 1.0000 80 chrIII:569601-569681 1.0000 80 chrIII:3915919-3915999 1.0000 80 chrI:3671840-3671920 1.0000 80 chrX:11600676-11600756 1.0000 80 chrII:4581005-4581085 1.0000 80 chrX:1244363-1244443 1.0000 80 chrIII:7623148-7623228 1.0000 80 chrIV:2809376-2809456 1.0000 80 chrV:13020795-13020875 1.0000 80 chrII:15218114-15218194 1.0000 80 chrX:7720954-7721034 1.0000 80 chrI:1874662-1874742 1.0000 80 chrII:12111137-12111217 1.0000 80 chrIV:4518275-4518355 1.0000 80 chrV:6352522-6352602 1.0000 80 chrV:1115663-1115743 1.0000 80 chrX:6092689-6092769 1.0000 80 chrX:9402158-9402238 1.0000 80 chrX:9088792-9088872 1.0000 80 chrV:18909860-18909940 1.0000 80 chrI:6379201-6379281 1.0000 80 chrII:8751101-8751181 1.0000 80 chrI:11084918-11084998 1.0000 80 chrX:11726514-11726594 1.0000 80 chrX:3314120-3314200 1.0000 80 chrIII:4010294-4010374 1.0000 80 chrII:4153339-4153419 1.0000 80 chrII:12824584-12824664 1.0000 80 chrV:17728505-17728585 1.0000 80 chrII:14819812-14819892 1.0000 80 chrI:8987243-8987323 1.0000 80 chrX:15108009-15108089 1.0000 80 chrIV:2218039-2218119 1.0000 80 chrI:86373-86453 1.0000 80 chrX:853028-853108 1.0000 80 chrI:14282347-14282427 1.0000 80 chrX:10370590-10370670 1.0000 80 chrI:14309145-14309225 1.0000 80 chrV:10679329-10679409 1.0000 80 chrIV:11120363-11120443 1.0000 80 chrV:18016838-18016918 1.0000 80 chrIII:217039-217119 1.0000 80 chrV:4630880-4630960 1.0000 80 chrI:6843417-6843497 1.0000 80 chrV:19998345-19998425 1.0000 80 chrI:3248266-3248346 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ham-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ham-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.272 C 0.234 G 0.235 T 0.26 Background letter frequencies (from file dataset with add-one prior applied): A 0.272 C 0.234 G 0.235 T 0.26 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCTTAAGC MEME-1 width = 8 sites = 47 llr = 441 E-value = 1.2e-035 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTTAAGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::a7:: pos.-specific C :93::::a probability G a1:::3a: matrix T ::7a:::: bits 2.1 * * 1.9 * ** ** 1.7 ** ** ** 1.5 ** ** ** Relative 1.3 ** ** ** Entropy 1.0 ******** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTTAAGC consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTAAGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:4630880-4630960 47 1.51e-05 ctaagccttc gcttaagc ctacacctaa chrI:14282347-14282427 43 1.51e-05 ttagactcag gcttaagc ttagggttag chrIV:2218039-2218119 25 1.51e-05 ataagcttat gcttaagc acaagcctaa chrV:17728505-17728585 14 1.51e-05 ctaagactaa gcttaagc ttaagcctaa chrII:12824584-12824664 63 1.51e-05 ttaggcttgg gcttaagc ttgggcttag chrV:18909860-18909940 56 1.51e-05 ctatgactaa gcttaagc caaagcctac chrI:978966-979046 17 1.51e-05 ttaggcttag gcttaagc ttaggcttag chrIV:1632787-1632867 49 1.51e-05 ttaagcttag gcttaagc ttaggcttag chrII:2990304-2990384 70 1.51e-05 ttaggtttag gcttaagc tta chrII:4152190-4152270 37 1.51e-05 GCTTTTACCG GCTTAAGC ATGGGCCtag chrIII:1718927-1719007 15 1.51e-05 ttaggcttag gcttaagc aggcttaagc chrX:4395266-4395346 41 1.51e-05 ttgaaaatcg gcttaagc cgaattagcc chrI:10404556-10404636 57 1.51e-05 ttaggcatag gcttaagc ttaggcttag chrIV:497314-497394 14 1.51e-05 Ttaagcctaa gcttaagc ctaagccaaa chrV:1848767-1848847 5 1.51e-05 ctta gcttaagc ctaagattag chrIV:3455585-3455665 28 1.51e-05 ctaagcctaa gcttaagc ctaagcctaa chrIII:2647364-2647444 13 1.51e-05 ctgagcctaa gcttaagc ttaagacgaa chrII:3912526-3912606 43 1.51e-05 ctaagcttga gcttaagc ctaggcctaa chrV:19998345-19998425 14 2.87e-05 ctcagcctaa gcctaagc ctaggcctaa chrII:14819812-14819892 45 2.87e-05 ctaagattta gcctaagc ataagattaa chrII:4153339-4153419 31 2.87e-05 ttaagcgtaa gcctaagc cttagcctca chrV:19543696-19543776 68 2.87e-05 ctaatcgtaa gcctaagc TCATT chrV:17996303-17996383 47 2.87e-05 ctaagtttaa gcctaagc ctaagctaag chrV:18565828-18565908 49 2.87e-05 ctatgtctag gcctaagc ctaagcctaa chrII:3930173-3930253 7 2.87e-05 gcctaa gcctaagc atagcctaag chrII:4277792-4277872 67 2.87e-05 ctaagcctaa gcctaagc ccaaga chrI:11540469-11540549 8 2.87e-05 agcatag gcctaagc ctcagcctaa chrIII:12015389-12015469 25 2.87e-05 ttaagtataa gcctaagc ctaagtttta chrV:2826109-2826189 65 2.87e-05 ctaggtctaa gcctaagc caaagccg chrV:1115663-1115743 37 4.18e-05 ttaggtttgt gcttaggc ttattattaa chrI:14524270-14524350 13 4.18e-05 TTCCgcttag gcttaggc ttaggcttag chrIII:12131968-12132048 17 4.18e-05 ttaggtttag gcttaggc ttaggctaag chrI:775815-775895 20 4.18e-05 ttagtcttaa gcttaggc ttaggcttgc chrV:18613286-18613366 14 4.18e-05 ttagggttag gcttaggc ttaggcttag chrV:19231304-19231384 15 4.18e-05 tttggtatag gcttaggc ttaggcttag chrV:4355195-4355275 15 4.18e-05 ttacgcttat gcttaggc ttagtctaaa chrII:337528-337608 10 4.18e-05 taggtttag gcttaggc ttatgttaag chrII:12436881-12436961 12 4.18e-05 ttaagcttag gcttaggc tccggcttag chrI:746257-746337 52 4.18e-05 ttaggtgtcg gcttaggc tttagcttag chrII:4155247-4155327 68 4.18e-05 ttaggcttag gcttaggc ttagg chrIII:2414145-2414225 6 6.87e-05 cattt ggttaagc tttttttgtc chrIII:5436489-5436569 70 6.87e-05 CATCATATCG GGTTAAGC AGG chrIV:53202-53282 3 1.11e-04 TT GCGTAAGC AAGCGAGAGG chrIII:8504485-8504565 7 1.39e-04 CAGAAT GCTTATGC GACGCGGCTT chrII:14571937-14572017 37 1.52e-04 AGAAGGAGAA GCCTAACC GGGGGAGATT chrIII:1053187-1053267 69 2.02e-04 CAAGCATGTA GGCTAGGC GGTG chrII:12111137-12111217 52 2.14e-04 gcctagcctt gcctagcc tcgccaagcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTAAGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:4630880-4630960 1.5e-05 46_[+1]_26 chrI:14282347-14282427 1.5e-05 42_[+1]_30 chrIV:2218039-2218119 1.5e-05 24_[+1]_48 chrV:17728505-17728585 1.5e-05 13_[+1]_59 chrII:12824584-12824664 1.5e-05 62_[+1]_10 chrV:18909860-18909940 1.5e-05 55_[+1]_17 chrI:978966-979046 1.5e-05 16_[+1]_56 chrIV:1632787-1632867 1.5e-05 48_[+1]_24 chrII:2990304-2990384 1.5e-05 69_[+1]_3 chrII:4152190-4152270 1.5e-05 36_[+1]_36 chrIII:1718927-1719007 1.5e-05 14_[+1]_58 chrX:4395266-4395346 1.5e-05 40_[+1]_32 chrI:10404556-10404636 1.5e-05 56_[+1]_16 chrIV:497314-497394 1.5e-05 13_[+1]_59 chrV:1848767-1848847 1.5e-05 4_[+1]_68 chrIV:3455585-3455665 1.5e-05 27_[+1]_45 chrIII:2647364-2647444 1.5e-05 12_[+1]_60 chrII:3912526-3912606 1.5e-05 42_[+1]_30 chrV:19998345-19998425 2.9e-05 13_[+1]_59 chrII:14819812-14819892 2.9e-05 44_[+1]_28 chrII:4153339-4153419 2.9e-05 30_[+1]_42 chrV:19543696-19543776 2.9e-05 67_[+1]_5 chrV:17996303-17996383 2.9e-05 46_[+1]_26 chrV:18565828-18565908 2.9e-05 48_[+1]_24 chrII:3930173-3930253 2.9e-05 6_[+1]_66 chrII:4277792-4277872 2.9e-05 66_[+1]_6 chrI:11540469-11540549 2.9e-05 7_[+1]_65 chrIII:12015389-12015469 2.9e-05 24_[+1]_48 chrV:2826109-2826189 2.9e-05 64_[+1]_8 chrV:1115663-1115743 4.2e-05 36_[+1]_36 chrI:14524270-14524350 4.2e-05 12_[+1]_60 chrIII:12131968-12132048 4.2e-05 16_[+1]_56 chrI:775815-775895 4.2e-05 19_[+1]_53 chrV:18613286-18613366 4.2e-05 13_[+1]_59 chrV:19231304-19231384 4.2e-05 14_[+1]_58 chrV:4355195-4355275 4.2e-05 14_[+1]_58 chrII:337528-337608 4.2e-05 9_[+1]_63 chrII:12436881-12436961 4.2e-05 11_[+1]_61 chrI:746257-746337 4.2e-05 51_[+1]_21 chrII:4155247-4155327 4.2e-05 67_[+1]_5 chrIII:2414145-2414225 6.9e-05 5_[+1]_67 chrIII:5436489-5436569 6.9e-05 69_[+1]_3 chrIV:53202-53282 0.00011 2_[+1]_70 chrIII:8504485-8504565 0.00014 6_[+1]_66 chrII:14571937-14572017 0.00015 36_[+1]_36 chrIII:1053187-1053267 0.0002 68_[+1]_4 chrII:12111137-12111217 0.00021 51_[+1]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTAAGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTTAAGC width=8 seqs=47 chrV:4630880-4630960 ( 47) GCTTAAGC 1 chrI:14282347-14282427 ( 43) GCTTAAGC 1 chrIV:2218039-2218119 ( 25) GCTTAAGC 1 chrV:17728505-17728585 ( 14) GCTTAAGC 1 chrII:12824584-12824664 ( 63) GCTTAAGC 1 chrV:18909860-18909940 ( 56) GCTTAAGC 1 chrI:978966-979046 ( 17) GCTTAAGC 1 chrIV:1632787-1632867 ( 49) GCTTAAGC 1 chrII:2990304-2990384 ( 70) GCTTAAGC 1 chrII:4152190-4152270 ( 37) GCTTAAGC 1 chrIII:1718927-1719007 ( 15) GCTTAAGC 1 chrX:4395266-4395346 ( 41) GCTTAAGC 1 chrI:10404556-10404636 ( 57) GCTTAAGC 1 chrIV:497314-497394 ( 14) GCTTAAGC 1 chrV:1848767-1848847 ( 5) GCTTAAGC 1 chrIV:3455585-3455665 ( 28) GCTTAAGC 1 chrIII:2647364-2647444 ( 13) GCTTAAGC 1 chrII:3912526-3912606 ( 43) GCTTAAGC 1 chrV:19998345-19998425 ( 14) GCCTAAGC 1 chrII:14819812-14819892 ( 45) GCCTAAGC 1 chrII:4153339-4153419 ( 31) GCCTAAGC 1 chrV:19543696-19543776 ( 68) GCCTAAGC 1 chrV:17996303-17996383 ( 47) GCCTAAGC 1 chrV:18565828-18565908 ( 49) GCCTAAGC 1 chrII:3930173-3930253 ( 7) GCCTAAGC 1 chrII:4277792-4277872 ( 67) GCCTAAGC 1 chrI:11540469-11540549 ( 8) GCCTAAGC 1 chrIII:12015389-12015469 ( 25) GCCTAAGC 1 chrV:2826109-2826189 ( 65) GCCTAAGC 1 chrV:1115663-1115743 ( 37) GCTTAGGC 1 chrI:14524270-14524350 ( 13) GCTTAGGC 1 chrIII:12131968-12132048 ( 17) GCTTAGGC 1 chrI:775815-775895 ( 20) GCTTAGGC 1 chrV:18613286-18613366 ( 14) GCTTAGGC 1 chrV:19231304-19231384 ( 15) GCTTAGGC 1 chrV:4355195-4355275 ( 15) GCTTAGGC 1 chrII:337528-337608 ( 10) GCTTAGGC 1 chrII:12436881-12436961 ( 12) GCTTAGGC 1 chrI:746257-746337 ( 52) GCTTAGGC 1 chrII:4155247-4155327 ( 68) GCTTAGGC 1 chrIII:2414145-2414225 ( 6) GGTTAAGC 1 chrIII:5436489-5436569 ( 70) GGTTAAGC 1 chrIV:53202-53282 ( 3) GCGTAAGC 1 chrIII:8504485-8504565 ( 7) GCTTATGC 1 chrII:14571937-14572017 ( 37) GCCTAACC 1 chrIII:1053187-1053267 ( 69) GGCTAGGC 1 chrII:12111137-12111217 ( 52) GCCTAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTAAGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.68137 E= 1.2e-035 -1220 -1220 209 -1220 -1220 200 -188 -1220 -1220 35 -346 139 -1220 -1220 -1220 194 188 -1220 -1220 -1220 137 -1220 24 -361 -1220 -246 203 -1220 -1220 210 -1220 -1220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTAAGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 1.2e-035 0.000000 0.000000 1.000000 0.000000 0.000000 0.936170 0.063830 0.000000 0.000000 0.297872 0.021277 0.680851 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.702128 0.000000 0.276596 0.021277 0.000000 0.042553 0.957447 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTAAGC MEME-1 regular expression -------------------------------------------------------------------------------- GC[TC]TA[AG]GC -------------------------------------------------------------------------------- Time 6.02 secs. ******************************************************************************** ******************************************************************************** MOTIF BCTTAGCC MEME-2 width = 8 sites = 75 llr = 577 E-value = 6.2e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif BCTTAGCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2:3a::: pos.-specific C 35::::7a probability G 42:::a3: matrix T 31a7:::: bits 2.1 * * 1.9 * ** * 1.7 * ** * 1.5 * ** * Relative 1.3 * **** Entropy 1.0 ****** (11.1 bits) 0.8 ****** 0.6 ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTTAGCC consensus CG A G sequence TA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTAGCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:19998345-19998425 57 2.60e-05 taagcctaag ccttagcc ataatcccca chrI:530425-530505 21 2.60e-05 TATTCTTGTT CCTTAGCC TTCTCCCCCT chrII:14611578-14611658 18 4.04e-05 ATATCACATA TCTTAGCC GGTTTTTCGA chrI:11645914-11645994 29 6.70e-05 aaattagccg ggttagcc ggtcggctga chrIII:12015389-12015469 56 6.70e-05 taagcctaag gctaagcc tgagcctaaa chrV:6934857-6934937 67 6.70e-05 GGTAGACGAC GGTTAGCC AACAAT chrV:1848767-1848847 56 6.70e-05 cctaagctta gctaagcc taagcttagc chrIII:2647364-2647444 32 6.70e-05 taagacgaag gctaagcc taatgcaaag chrII:3912526-3912606 73 6.70e-05 ctaaggctaa gctaagcc chrV:4630880-4630960 71 1.07e-04 ctaagcctat cctaagcc ta chrI:14282347-14282427 67 1.07e-04 ttaggcctag gcttaggc tcaggc chrX:853028-853108 39 1.07e-04 ATTAAAAATT CGTTAGCC GGTGTTCCTA chrIV:2218039-2218119 62 1.07e-04 tatgaataag cctaagcc taaacctaag chrII:14819812-14819892 70 1.07e-04 taagcctcag cctaagcc taa chrII:12824584-12824664 51 1.07e-04 gagaccttag gcttaggc ttgggcttaa chrV:18909860-18909940 9 1.07e-04 agactaag cctaagcc tatacctaaa chrV:19543696-19543776 45 1.07e-04 taagcctaag cctaagcc aaagcctaat chrI:14524270-14524350 61 1.07e-04 tcagacttag gcttaggc tttgagttag chrV:17996303-17996383 71 1.07e-04 taagtttaag cctaagcc ta chrII:3930173-3930253 19 1.07e-04 ctaagcatag cctaagcc taagcctaag chrI:978966-979046 41 1.07e-04 ttaggcttag gcttaggc ttaggctcag chrIII:12131968-12132048 47 1.07e-04 ttaggctaag gcttaggc ttagactaag chrI:6436613-6436693 15 1.07e-04 tgaaattagc cgttagcc gaattagccg chrI:775815-775895 2 1.07e-04 g gcttaggc ttagtcttaa chrX:4586293-4586373 60 1.07e-04 ccaaactagc cgttagcc gaaatttttg chrI:8357347-8357427 70 1.07e-04 ccgaattagc cgttagcc gaA chrV:18613286-18613366 44 1.07e-04 gtagcctcag gcttaggc atggacttag chrIV:1632787-1632867 7 1.07e-04 gcttaa gcttaggc ttaagcttag chrV:19231304-19231384 27 1.07e-04 ttaggcttag gcttaggc ttgggcttgg chrII:2990304-2990384 10 1.07e-04 ttaactcag gcttaggc ttaggattag chrII:4277792-4277872 56 1.07e-04 taagcctaat cctaagcc taagcctaag chrV:4355195-4355275 57 1.07e-04 tttgacttag gcttaggc ttTGGCCCAG chrII:4152190-4152270 67 1.07e-04 ttaggctcag gcttaggc ttaggt chrIII:1718927-1719007 61 1.07e-04 tgaggctgag gcttaggc atagtcttag chrIII:2121103-2121183 1 1.07e-04 . cgttagcc gactttttgg chrV:2826109-2826189 12 1.07e-04 taagcctatg cctaagcc taagtttaaa chrII:12436881-12436961 24 1.07e-04 ttaggctccg gcttaggc ttatgcttgg chrX:4395266-4395346 58 1.07e-04 ccgaattagc cgttagcc gaaaaaaaca chrI:746257-746337 64 1.07e-04 ttaggcttta gcttaggc ttagtctta chrI:10404556-10404636 45 1.07e-04 ttagtcttag gcttaggc ataggcttaa chrIV:497314-497394 63 1.07e-04 taaacctaag cctaagcc tacgcctaag chrIV:3455585-3455665 65 1.07e-04 taagcctaaa cctaagcc tatgccta chrII:4155247-4155327 26 1.07e-04 ttgaacttag gcttaggc ttagacttag chrI:6279382-6279462 63 1.22e-04 ACGGGAGAAG GATTAGCC TAAAGCGATA chrIV:5104408-5104488 26 1.22e-04 atattagcca gattagcc ggtcggctaa chrII:4153339-4153419 50 1.64e-04 ttagcctcat tctaagcc tcagcctaaa chrI:11540469-11540549 39 1.64e-04 caagccaaag tctaagcc aaagcaaaag chrX:11003855-11003935 23 1.64e-04 tgctccattg tgttagcc gaattagccg chrIV:11719355-11719435 28 1.64e-04 CGTCGCTTAT TGTTAGCC GCCAAATTGC chrX:7937119-7937199 37 1.64e-04 aataatttgt tgttagcc gaattagccg chrX:11003650-11003730 25 1.64e-04 attcggctaa tgttagcc gagttagccg chrX:1244363-1244443 10 1.79e-04 ACACCCTTC CATTAGCC ACTTTCATCG chrX:3319475-3319555 69 1.79e-04 CGCTTAACGC CATTAGCC CCAA chrI:5746526-5746606 19 1.79e-04 TTTAGCCGAC CATTAGCC GGCTTACCGT chrV:18016838-18016918 24 2.24e-04 taacggctaa tattagcc aagttagccg chrIII:8602463-8602543 51 2.24e-04 AGGAAAGTTC GGTAAGCC AGAAGAAATA chrIII:1404498-1404578 67 2.24e-04 actcggctaa tattagcc gaatta chrIII:711205-711285 57 2.24e-04 CAGACGTGCT TATTAGCC GTAAGAAGCT chrX:10383018-10383098 66 2.24e-04 attcggctaa tattagcc gaattaa chrV:20843945-20844025 61 2.24e-04 attcggctaa tattagcc aaatcagcca chrI:7213590-7213670 58 2.24e-04 AAGTGGATGC GGTAAGCC GCGGATGAAC chrIII:3758922-3759002 68 2.24e-04 gataactacg tattagcc gaact chrII:12082234-12082314 59 2.24e-04 taacggtacg tattagcc gaactgccaa chrX:342155-342235 58 2.24e-04 aatcggctaa tattagcc gagttaaagg chrV:17728505-17728585 63 3.22e-04 taagcttaac cctaaggc taattctaaa chrI:7755549-7755629 23 3.22e-04 CTTTATCCCC TGTAAGCC ATATCTTCAC chrII:12960381-12960461 5 3.22e-04 CTAG TGTAAGCC TCTCCGAACT chrV:1115663-1115743 13 3.83e-04 cttatgctaa tgttaggc ttatgcttag chrI:1874662-1874742 23 3.83e-04 AGGCAACTGG TGTTAGGC TTTTCCACTG chrIII:7623148-7623228 22 4.30e-04 TTCCTCCCCC GTTTAGCC TCCCTTACCT chrV:1164360-1164440 41 4.30e-04 TCTCGGCTTG GTTTAGCC GCTAGAAGAA chrX:8285484-8285564 3 5.20e-04 GA GATAAGGC CCATTTTGTC chrX:10318564-10318644 57 5.20e-04 CGCCGCTTTA TTTTAGCC GGAATCTGCC chrI:4787830-4787910 12 5.20e-04 AAGATTTTGA TTTTAGCC GGCTAATGGT chrX:3094497-3094577 7 5.20e-04 CCTCGA GATAAGGC AAGTGAAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTAGCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:19998345-19998425 2.6e-05 56_[+2]_16 chrI:530425-530505 2.6e-05 20_[+2]_52 chrII:14611578-14611658 4e-05 17_[+2]_55 chrI:11645914-11645994 6.7e-05 28_[+2]_44 chrIII:12015389-12015469 6.7e-05 55_[+2]_17 chrV:6934857-6934937 6.7e-05 66_[+2]_6 chrV:1848767-1848847 6.7e-05 55_[+2]_17 chrIII:2647364-2647444 6.7e-05 31_[+2]_41 chrII:3912526-3912606 6.7e-05 72_[+2] chrV:4630880-4630960 0.00011 70_[+2]_2 chrI:14282347-14282427 0.00011 66_[+2]_6 chrX:853028-853108 0.00011 38_[+2]_34 chrIV:2218039-2218119 0.00011 61_[+2]_11 chrII:14819812-14819892 0.00011 69_[+2]_3 chrII:12824584-12824664 0.00011 50_[+2]_22 chrV:18909860-18909940 0.00011 8_[+2]_64 chrV:19543696-19543776 0.00011 44_[+2]_28 chrI:14524270-14524350 0.00011 60_[+2]_12 chrV:17996303-17996383 0.00011 70_[+2]_2 chrII:3930173-3930253 0.00011 18_[+2]_54 chrI:978966-979046 0.00011 40_[+2]_32 chrIII:12131968-12132048 0.00011 46_[+2]_26 chrI:6436613-6436693 0.00011 14_[+2]_58 chrI:775815-775895 0.00011 1_[+2]_71 chrX:4586293-4586373 0.00011 59_[+2]_13 chrI:8357347-8357427 0.00011 69_[+2]_3 chrV:18613286-18613366 0.00011 43_[+2]_29 chrIV:1632787-1632867 0.00011 6_[+2]_66 chrV:19231304-19231384 0.00011 26_[+2]_46 chrII:2990304-2990384 0.00011 9_[+2]_63 chrII:4277792-4277872 0.00011 55_[+2]_17 chrV:4355195-4355275 0.00011 56_[+2]_16 chrII:4152190-4152270 0.00011 66_[+2]_6 chrIII:1718927-1719007 0.00011 60_[+2]_12 chrIII:2121103-2121183 0.00011 [+2]_72 chrV:2826109-2826189 0.00011 11_[+2]_61 chrII:12436881-12436961 0.00011 23_[+2]_49 chrX:4395266-4395346 0.00011 57_[+2]_15 chrI:746257-746337 0.00011 63_[+2]_9 chrI:10404556-10404636 0.00011 44_[+2]_28 chrIV:497314-497394 0.00011 62_[+2]_10 chrIV:3455585-3455665 0.00011 64_[+2]_8 chrII:4155247-4155327 0.00011 25_[+2]_47 chrI:6279382-6279462 0.00012 62_[+2]_10 chrIV:5104408-5104488 0.00012 25_[+2]_47 chrII:4153339-4153419 0.00016 49_[+2]_23 chrI:11540469-11540549 0.00016 38_[+2]_34 chrX:11003855-11003935 0.00016 22_[+2]_50 chrIV:11719355-11719435 0.00016 27_[+2]_45 chrX:7937119-7937199 0.00016 36_[+2]_36 chrX:11003650-11003730 0.00016 24_[+2]_48 chrX:1244363-1244443 0.00018 9_[+2]_63 chrX:3319475-3319555 0.00018 68_[+2]_4 chrI:5746526-5746606 0.00018 18_[+2]_54 chrV:18016838-18016918 0.00022 23_[+2]_49 chrIII:8602463-8602543 0.00022 50_[+2]_22 chrIII:1404498-1404578 0.00022 66_[+2]_6 chrIII:711205-711285 0.00022 56_[+2]_16 chrX:10383018-10383098 0.00022 65_[+2]_7 chrV:20843945-20844025 0.00022 60_[+2]_12 chrI:7213590-7213670 0.00022 57_[+2]_15 chrIII:3758922-3759002 0.00022 67_[+2]_5 chrII:12082234-12082314 0.00022 58_[+2]_14 chrX:342155-342235 0.00022 57_[+2]_15 chrV:17728505-17728585 0.00032 62_[+2]_10 chrI:7755549-7755629 0.00032 22_[+2]_50 chrII:12960381-12960461 0.00032 4_[+2]_68 chrV:1115663-1115743 0.00038 12_[+2]_60 chrI:1874662-1874742 0.00038 22_[+2]_50 chrIII:7623148-7623228 0.00043 21_[+2]_51 chrV:1164360-1164440 0.00043 40_[+2]_32 chrX:8285484-8285564 0.00052 2_[+2]_70 chrX:10318564-10318644 0.00052 56_[+2]_16 chrI:4787830-4787910 0.00052 11_[+2]_61 chrX:3094497-3094577 0.00052 6_[+2]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTAGCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BCTTAGCC width=8 seqs=75 chrV:19998345-19998425 ( 57) CCTTAGCC 1 chrI:530425-530505 ( 21) CCTTAGCC 1 chrII:14611578-14611658 ( 18) TCTTAGCC 1 chrI:11645914-11645994 ( 29) GGTTAGCC 1 chrIII:12015389-12015469 ( 56) GCTAAGCC 1 chrV:6934857-6934937 ( 67) GGTTAGCC 1 chrV:1848767-1848847 ( 56) GCTAAGCC 1 chrIII:2647364-2647444 ( 32) GCTAAGCC 1 chrII:3912526-3912606 ( 73) GCTAAGCC 1 chrV:4630880-4630960 ( 71) CCTAAGCC 1 chrI:14282347-14282427 ( 67) GCTTAGGC 1 chrX:853028-853108 ( 39) CGTTAGCC 1 chrIV:2218039-2218119 ( 62) CCTAAGCC 1 chrII:14819812-14819892 ( 70) CCTAAGCC 1 chrII:12824584-12824664 ( 51) GCTTAGGC 1 chrV:18909860-18909940 ( 9) CCTAAGCC 1 chrV:19543696-19543776 ( 45) CCTAAGCC 1 chrI:14524270-14524350 ( 61) GCTTAGGC 1 chrV:17996303-17996383 ( 71) CCTAAGCC 1 chrII:3930173-3930253 ( 19) CCTAAGCC 1 chrI:978966-979046 ( 41) GCTTAGGC 1 chrIII:12131968-12132048 ( 47) GCTTAGGC 1 chrI:6436613-6436693 ( 15) CGTTAGCC 1 chrI:775815-775895 ( 2) GCTTAGGC 1 chrX:4586293-4586373 ( 60) CGTTAGCC 1 chrI:8357347-8357427 ( 70) CGTTAGCC 1 chrV:18613286-18613366 ( 44) GCTTAGGC 1 chrIV:1632787-1632867 ( 7) GCTTAGGC 1 chrV:19231304-19231384 ( 27) GCTTAGGC 1 chrII:2990304-2990384 ( 10) GCTTAGGC 1 chrII:4277792-4277872 ( 56) CCTAAGCC 1 chrV:4355195-4355275 ( 57) GCTTAGGC 1 chrII:4152190-4152270 ( 67) GCTTAGGC 1 chrIII:1718927-1719007 ( 61) GCTTAGGC 1 chrIII:2121103-2121183 ( 1) CGTTAGCC 1 chrV:2826109-2826189 ( 12) CCTAAGCC 1 chrII:12436881-12436961 ( 24) GCTTAGGC 1 chrX:4395266-4395346 ( 58) CGTTAGCC 1 chrI:746257-746337 ( 64) GCTTAGGC 1 chrI:10404556-10404636 ( 45) GCTTAGGC 1 chrIV:497314-497394 ( 63) CCTAAGCC 1 chrIV:3455585-3455665 ( 65) CCTAAGCC 1 chrII:4155247-4155327 ( 26) GCTTAGGC 1 chrI:6279382-6279462 ( 63) GATTAGCC 1 chrIV:5104408-5104488 ( 26) GATTAGCC 1 chrII:4153339-4153419 ( 50) TCTAAGCC 1 chrI:11540469-11540549 ( 39) TCTAAGCC 1 chrX:11003855-11003935 ( 23) TGTTAGCC 1 chrIV:11719355-11719435 ( 28) TGTTAGCC 1 chrX:7937119-7937199 ( 37) TGTTAGCC 1 chrX:11003650-11003730 ( 25) TGTTAGCC 1 chrX:1244363-1244443 ( 10) CATTAGCC 1 chrX:3319475-3319555 ( 69) CATTAGCC 1 chrI:5746526-5746606 ( 19) CATTAGCC 1 chrV:18016838-18016918 ( 24) TATTAGCC 1 chrIII:8602463-8602543 ( 51) GGTAAGCC 1 chrIII:1404498-1404578 ( 67) TATTAGCC 1 chrIII:711205-711285 ( 57) TATTAGCC 1 chrX:10383018-10383098 ( 66) TATTAGCC 1 chrV:20843945-20844025 ( 61) TATTAGCC 1 chrI:7213590-7213670 ( 58) GGTAAGCC 1 chrIII:3758922-3759002 ( 68) TATTAGCC 1 chrII:12082234-12082314 ( 59) TATTAGCC 1 chrX:342155-342235 ( 58) TATTAGCC 1 chrV:17728505-17728585 ( 63) CCTAAGGC 1 chrI:7755549-7755629 ( 23) TGTAAGCC 1 chrII:12960381-12960461 ( 5) TGTAAGCC 1 chrV:1115663-1115743 ( 13) TGTTAGGC 1 chrI:1874662-1874742 ( 23) TGTTAGGC 1 chrIII:7623148-7623228 ( 22) GTTTAGCC 1 chrV:1164360-1164440 ( 41) GTTTAGCC 1 chrX:8285484-8285564 ( 3) GATAAGGC 1 chrX:10318564-10318644 ( 57) TTTTAGCC 1 chrI:4787830-4787910 ( 12) TTTTAGCC 1 chrX:3094497-3094577 ( 7) GATAAGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTAGCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.73438 E= 6.2e-027 -1287 39 82 11 -44 112 3 -228 -1287 -1287 -1287 194 24 -1287 -1287 139 188 -1287 -1287 -1287 -1287 -1287 209 -1287 -1287 160 32 -1287 -1287 210 -1287 -1287 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTAGCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 6.2e-027 0.000000 0.306667 0.413333 0.280000 0.200000 0.506667 0.240000 0.053333 0.000000 0.000000 0.000000 1.000000 0.320000 0.000000 0.000000 0.680000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.706667 0.293333 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTAGCC MEME-2 regular expression -------------------------------------------------------------------------------- [GCT][CGA]T[TA]AG[CG]C -------------------------------------------------------------------------------- Time 9.69 secs. ******************************************************************************** ******************************************************************************** MOTIF AGSCTAAG MEME-3 width = 8 sites = 64 llr = 500 E-value = 3.1e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGSCTAAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8::::7a: pos.-specific C 2:4a:::1 probability G :a5:1::6 matrix T ::::93:3 bits 2.1 * * 1.9 * * * 1.7 * * * 1.5 * ** * Relative 1.3 * ** * Entropy 1.0 ***** * (11.3 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGCTAAG consensus C C T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCTAAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15108009-15108089 30 1.59e-05 ATAAGTTGAC AGGCTAAG GGCGGGGCTT chrIII:12131968-12132048 39 1.59e-05 gctaaggctt aggctaag gcttaggctt chrV:19998345-19998425 49 3.17e-05 cctaagccta agcctaag ccttagccat chrIV:2218039-2218119 36 3.17e-05 cttaagcaca agcctaag tctaagccta chrII:14819812-14819892 2 3.17e-05 a agcctaag cccaagccaa chrV:17728505-17728585 1 3.17e-05 . agcctaag actaagctta chrII:4153339-4153419 6 3.17e-05 gttta agcctaag tctaagatta chrV:19543696-19543776 7 3.17e-05 agacta agcctaag catgtgccta chrV:17996303-17996383 6 3.17e-05 Cgcca agcctaag ctaagtttaa chrII:3930173-3930253 29 3.17e-05 cctaagccta agcctaag cataaccaag chrIV:17453174-17453254 2 3.17e-05 A AGCCTAAG AGAAGCCAAG chrII:4277792-4277872 6 3.17e-05 gcata agcctaag cctgagcctg chrI:11540469-11540549 19 3.17e-05 cctaagcctc agcctaag aacaagccaa chrIII:12015389-12015469 48 3.17e-05 ttttagccta agcctaag gctaagcctg chrV:2826109-2826189 46 3.17e-05 cctcagccca agcctaag tctaggtcta chrIV:497314-497394 31 3.17e-05 cctaagccaa agcctaag cctaagccaa chrV:1848767-1848847 44 3.17e-05 gcttagctta agcctaag cttagctaag chrIV:3455585-3455665 15 3.17e-05 cctaagatta agcctaag cctaagctta chrIII:2647364-2647444 48 3.17e-05 cctaatgcaa agcctaag cgtaagccta chrII:3912526-3912606 18 3.17e-05 cctaattata agcctaag cctaagccta chrIV:12816734-12816814 20 4.93e-05 TGGATTGGAG AGGCTAAT TGGCGAGATG chrI:14524270-14524350 23 7.81e-05 gcttaggctt aggcttag gtttaagctt chrIII:8602463-8602543 23 7.81e-05 GAAGAGATGA AGGCTTAG TTCGGATAGC chrI:978966-979046 33 7.81e-05 gcttaggctt aggcttag gcttaggctt chrV:18613286-18613366 72 7.81e-05 gcgtagcctc aggcttag g chrIV:1632787-1632867 59 7.81e-05 gcttaagctt aggcttag gctcaggctc chrV:19231304-19231384 71 7.81e-05 ggttgggctc aggcttag gc chrII:2990304-2990384 44 7.81e-05 gcttaggttt aggcttag gtttaggctt chrIII:1718927-1719007 1 7.81e-05 . aggcttag gcttaggctt chrIII:8599145-8599225 60 7.81e-05 GTCACCAAGA CGGCTAAG ACGGAAAAAA chrI:746257-746337 2 7.81e-05 t aggcttag accaaggcgt chrI:10404556-10404636 13 7.81e-05 ggctgaggct aggcttag gattgggcgt chrII:4155247-4155327 60 7.81e-05 ggtgaagctt aggcttag gcttaggctt chrV:4630880-4630960 4 9.57e-05 ctt agcctaat cctaagccta chrIII:39675-39755 14 9.57e-05 CAGCCGGAAT AGCCTAAT GATCCGCAAC chrII:12111137-12111217 5 1.56e-04 gtct agcctaac atctttggct chrIV:12617383-12617463 60 1.70e-04 AGCCATGAAG AGGCGAAG AGACAGAGTG chrX:10370590-10370670 56 2.02e-04 acggataatt cggctaat gttagttggg chrI:8357347-8357427 47 2.02e-04 ccggctaact cggctaat attagccgaa chrI:11645914-11645994 51 2.02e-04 ggctgaaatt cggctaat tcggctaaCT chrX:11003855-11003935 70 2.02e-04 tcggctaact cggctaat gtc chrII:337528-337608 32 2.02e-04 gttaaggcct aggcttat gctcatgctt chrX:11003650-11003730 9 2.02e-04 tcggctaa cggctaat tcggctaatg chrX:10383018-10383098 50 2.02e-04 actcggctaa cggctaat tcggctaata chrIV:5104408-5104488 10 2.02e-04 cgttttttt cggctaat attagccaga chrII:12436881-12436961 64 2.02e-04 tattaggctc aggcttat gcttgggct chrV:20843945-20844025 18 2.02e-04 tccgcgaatt cggctaat tggtaaaaaa chrX:342155-342235 16 2.02e-04 acggcttatt cggctaat taggaaaacg chrX:9494815-9494895 38 2.30e-04 ACAACAATTG CGGCTTAG GTGCCCCGCG chrIII:1053187-1053267 1 2.30e-04 . AGCCGAAG GTCTCCTGGT chrIII:1404498-1404578 51 3.03e-04 ttcagccgac cggctaac tcggctaata chrV:4355195-4355275 1 3.03e-04 . aggcttac gcttatgctt chrI:4787830-4787910 52 3.03e-04 CCAGGCGCCA CGGCTAAC AGACACACAA chrIII:3758922-3759002 49 3.03e-04 cggccaaaat cggctaac ggataactac chrII:12082234-12082314 45 3.03e-04 tcggcgaatt cggctaac ggtacgtatt chrX:4586293-4586373 12 4.18e-04 agctaatatt agccgaat tagccattac chrX:7937119-7937199 50 4.18e-04 tagccgaatt agccgaat tagccgaacg chrII:4152190-4152270 59 4.18e-04 GCCtaggttt aggctcag gcttaggctt chrIII:2121103-2121183 67 4.18e-04 ggccgatgtt agccgaat tagccg chrX:3094497-3094577 48 4.44e-04 CCGGGAGTGA AGCCGTAg gggggggggg chrIV:11211732-11211812 61 4.72e-04 TATGCCATCT AGCCTCAG AACAAGAAAA chrIV:8853631-8853711 48 4.86e-04 CCATATAAAC AGGCGAAC AGATAAGAAT chrV:14426144-14426224 39 5.13e-04 TTGTTTCGGA AGCCGAAC GGAGATCCTC chrV:18565828-18565908 72 5.31e-04 cctaaaccta agtctaag c -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCTAAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15108009-15108089 1.6e-05 29_[+3]_43 chrIII:12131968-12132048 1.6e-05 38_[+3]_34 chrV:19998345-19998425 3.2e-05 48_[+3]_24 chrIV:2218039-2218119 3.2e-05 35_[+3]_37 chrII:14819812-14819892 3.2e-05 1_[+3]_71 chrV:17728505-17728585 3.2e-05 [+3]_72 chrII:4153339-4153419 3.2e-05 5_[+3]_67 chrV:19543696-19543776 3.2e-05 6_[+3]_66 chrV:17996303-17996383 3.2e-05 5_[+3]_67 chrII:3930173-3930253 3.2e-05 28_[+3]_44 chrIV:17453174-17453254 3.2e-05 1_[+3]_71 chrII:4277792-4277872 3.2e-05 5_[+3]_67 chrI:11540469-11540549 3.2e-05 18_[+3]_54 chrIII:12015389-12015469 3.2e-05 47_[+3]_25 chrV:2826109-2826189 3.2e-05 45_[+3]_27 chrIV:497314-497394 3.2e-05 30_[+3]_42 chrV:1848767-1848847 3.2e-05 43_[+3]_29 chrIV:3455585-3455665 3.2e-05 14_[+3]_58 chrIII:2647364-2647444 3.2e-05 47_[+3]_25 chrII:3912526-3912606 3.2e-05 17_[+3]_55 chrIV:12816734-12816814 4.9e-05 19_[+3]_53 chrI:14524270-14524350 7.8e-05 22_[+3]_50 chrIII:8602463-8602543 7.8e-05 22_[+3]_50 chrI:978966-979046 7.8e-05 32_[+3]_40 chrV:18613286-18613366 7.8e-05 71_[+3]_1 chrIV:1632787-1632867 7.8e-05 58_[+3]_14 chrV:19231304-19231384 7.8e-05 70_[+3]_2 chrII:2990304-2990384 7.8e-05 43_[+3]_29 chrIII:1718927-1719007 7.8e-05 [+3]_72 chrIII:8599145-8599225 7.8e-05 59_[+3]_13 chrI:746257-746337 7.8e-05 1_[+3]_71 chrI:10404556-10404636 7.8e-05 12_[+3]_60 chrII:4155247-4155327 7.8e-05 59_[+3]_13 chrV:4630880-4630960 9.6e-05 3_[+3]_69 chrIII:39675-39755 9.6e-05 13_[+3]_59 chrII:12111137-12111217 0.00016 4_[+3]_68 chrIV:12617383-12617463 0.00017 59_[+3]_13 chrX:10370590-10370670 0.0002 55_[+3]_17 chrI:8357347-8357427 0.0002 46_[+3]_26 chrI:11645914-11645994 0.0002 50_[+3]_22 chrX:11003855-11003935 0.0002 69_[+3]_3 chrII:337528-337608 0.0002 31_[+3]_41 chrX:11003650-11003730 0.0002 8_[+3]_64 chrX:10383018-10383098 0.0002 49_[+3]_23 chrIV:5104408-5104488 0.0002 9_[+3]_63 chrII:12436881-12436961 0.0002 63_[+3]_9 chrV:20843945-20844025 0.0002 17_[+3]_55 chrX:342155-342235 0.0002 15_[+3]_57 chrX:9494815-9494895 0.00023 37_[+3]_35 chrIII:1053187-1053267 0.00023 [+3]_72 chrIII:1404498-1404578 0.0003 50_[+3]_22 chrV:4355195-4355275 0.0003 [+3]_72 chrI:4787830-4787910 0.0003 51_[+3]_21 chrIII:3758922-3759002 0.0003 48_[+3]_24 chrII:12082234-12082314 0.0003 44_[+3]_28 chrX:4586293-4586373 0.00042 11_[+3]_61 chrX:7937119-7937199 0.00042 49_[+3]_23 chrII:4152190-4152270 0.00042 58_[+3]_14 chrIII:2121103-2121183 0.00042 66_[+3]_6 chrX:3094497-3094577 0.00044 47_[+3]_25 chrIV:11211732-11211812 0.00047 60_[+3]_12 chrIV:8853631-8853711 0.00049 47_[+3]_25 chrV:14426144-14426224 0.00051 38_[+3]_34 chrV:18565828-18565908 0.00053 71_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCTAAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGSCTAAG width=8 seqs=64 chrX:15108009-15108089 ( 30) AGGCTAAG 1 chrIII:12131968-12132048 ( 39) AGGCTAAG 1 chrV:19998345-19998425 ( 49) AGCCTAAG 1 chrIV:2218039-2218119 ( 36) AGCCTAAG 1 chrII:14819812-14819892 ( 2) AGCCTAAG 1 chrV:17728505-17728585 ( 1) AGCCTAAG 1 chrII:4153339-4153419 ( 6) AGCCTAAG 1 chrV:19543696-19543776 ( 7) AGCCTAAG 1 chrV:17996303-17996383 ( 6) AGCCTAAG 1 chrII:3930173-3930253 ( 29) AGCCTAAG 1 chrIV:17453174-17453254 ( 2) AGCCTAAG 1 chrII:4277792-4277872 ( 6) AGCCTAAG 1 chrI:11540469-11540549 ( 19) AGCCTAAG 1 chrIII:12015389-12015469 ( 48) AGCCTAAG 1 chrV:2826109-2826189 ( 46) AGCCTAAG 1 chrIV:497314-497394 ( 31) AGCCTAAG 1 chrV:1848767-1848847 ( 44) AGCCTAAG 1 chrIV:3455585-3455665 ( 15) AGCCTAAG 1 chrIII:2647364-2647444 ( 48) AGCCTAAG 1 chrII:3912526-3912606 ( 18) AGCCTAAG 1 chrIV:12816734-12816814 ( 20) AGGCTAAT 1 chrI:14524270-14524350 ( 23) AGGCTTAG 1 chrIII:8602463-8602543 ( 23) AGGCTTAG 1 chrI:978966-979046 ( 33) AGGCTTAG 1 chrV:18613286-18613366 ( 72) AGGCTTAG 1 chrIV:1632787-1632867 ( 59) AGGCTTAG 1 chrV:19231304-19231384 ( 71) AGGCTTAG 1 chrII:2990304-2990384 ( 44) AGGCTTAG 1 chrIII:1718927-1719007 ( 1) AGGCTTAG 1 chrIII:8599145-8599225 ( 60) CGGCTAAG 1 chrI:746257-746337 ( 2) AGGCTTAG 1 chrI:10404556-10404636 ( 13) AGGCTTAG 1 chrII:4155247-4155327 ( 60) AGGCTTAG 1 chrV:4630880-4630960 ( 4) AGCCTAAT 1 chrIII:39675-39755 ( 14) AGCCTAAT 1 chrII:12111137-12111217 ( 5) AGCCTAAC 1 chrIV:12617383-12617463 ( 60) AGGCGAAG 1 chrX:10370590-10370670 ( 56) CGGCTAAT 1 chrI:8357347-8357427 ( 47) CGGCTAAT 1 chrI:11645914-11645994 ( 51) CGGCTAAT 1 chrX:11003855-11003935 ( 70) CGGCTAAT 1 chrII:337528-337608 ( 32) AGGCTTAT 1 chrX:11003650-11003730 ( 9) CGGCTAAT 1 chrX:10383018-10383098 ( 50) CGGCTAAT 1 chrIV:5104408-5104488 ( 10) CGGCTAAT 1 chrII:12436881-12436961 ( 64) AGGCTTAT 1 chrV:20843945-20844025 ( 18) CGGCTAAT 1 chrX:342155-342235 ( 16) CGGCTAAT 1 chrX:9494815-9494895 ( 38) CGGCTTAG 1 chrIII:1053187-1053267 ( 1) AGCCGAAG 1 chrIII:1404498-1404578 ( 51) CGGCTAAC 1 chrV:4355195-4355275 ( 1) AGGCTTAC 1 chrI:4787830-4787910 ( 52) CGGCTAAC 1 chrIII:3758922-3759002 ( 49) CGGCTAAC 1 chrII:12082234-12082314 ( 45) CGGCTAAC 1 chrX:4586293-4586373 ( 12) AGCCGAAT 1 chrX:7937119-7937199 ( 50) AGCCGAAT 1 chrII:4152190-4152270 ( 59) AGGCTCAG 1 chrIII:2121103-2121183 ( 67) AGCCGAAT 1 chrX:3094497-3094577 ( 48) AGCCGTAG 1 chrIV:11211732-11211812 ( 61) AGCCTCAG 1 chrIV:8853631-8853711 ( 48) AGGCGAAC 1 chrV:14426144-14426224 ( 39) AGCCGAAC 1 chrV:18565828-18565908 ( 72) AGTCTAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCTAAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.47551 E= 3.1e-018 150 0 -1264 -1264 -1264 -1264 209 -1264 -1264 90 122 -405 -1264 210 -1264 -1264 -1264 -1264 -91 175 140 -290 -1264 -6 188 -1264 -1264 -1264 -1264 -90 138 3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCTAAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 64 E= 3.1e-018 0.765625 0.234375 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.437500 0.546875 0.015625 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.718750 0.031250 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.609375 0.265625 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCTAAG MEME-3 regular expression -------------------------------------------------------------------------------- [AC]G[GC]CT[AT]A[GT] -------------------------------------------------------------------------------- Time 13.22 secs. ******************************************************************************** ******************************************************************************** MOTIF TAAGCYTA MEME-4 width = 8 sites = 53 llr = 423 E-value = 4.7e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAAGCYTA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :88::::a pos.-specific C 2:::a6:: probability G ::2a::3: matrix T 82:::37: bits 2.1 ** 1.9 ** * 1.7 ** * 1.5 ** * Relative 1.3 * ** * Entropy 1.0 ***** ** (11.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAAGCCTA consensus TG TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAGCYTA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:19998345-19998425 41 1.75e-05 agagtaaccc taagccta agcctaagcc chrV:4630880-4630960 62 1.75e-05 agcctacacc taagccta tcctaagcct chrIV:2218039-2218119 46 1.75e-05 agcctaagtc taagccta tgaataagcc chrII:14819812-14819892 30 1.75e-05 agcctacgcc taagccta agatttagcc chrV:17728505-17728585 23 1.75e-05 agcttaagct taagccta agcttaagca chrV:18909860-18909940 41 1.75e-05 gcccaaagct taagccta tgactaagct chrV:19543696-19543776 35 1.75e-05 agcctgagcc taagccta agcctaagcc chrV:17996303-17996383 21 1.75e-05 aagctaagtt taagccta aacctaagct chrV:18565828-18565908 58 1.75e-05 ggcctaagcc taagccta aacctaagtc chrII:4277792-4277872 46 1.75e-05 agcctaagcc taagccta atcctaagcc chrV:2826109-2826189 2 1.75e-05 t taagccta tgcctaagcc chrIV:497314-497394 5 1.75e-05 AGAT taagccta agcttaagcc chrV:1848767-1848847 25 1.75e-05 aagattagct taagccta agcttagctt chrIV:3455585-3455665 55 1.75e-05 agcctaagaa taagccta aacctaagcc chrIII:2647364-2647444 70 1.75e-05 agcctaggcc taagccta agt chrII:3912526-3912606 4 1.75e-05 gcg taagccta attataagcc chrI:14524270-14524350 34 5.28e-05 ggcttaggtt taagctta tgcatagttt chrIV:1632787-1632867 28 5.28e-05 agcttaggct taagctta ggcttaagct chrIII:1718927-1719007 28 5.28e-05 taagcaggct taagctta agcttaggct chrII:12436881-12436961 3 5.28e-05 tt taagctta ggcttaggct chrI:14282347-14282427 58 6.79e-05 agcttagggt taggccta ggcttaggct chrIII:12015389-12015469 40 8.46e-05 agcctaagtt ttagccta agcctaaggc chrII:12111137-12111217 69 1.18e-04 ctcgccaagc caagccta gtct chrII:3930173-3930253 43 1.18e-04 taagcataac caagccta aATAGCTAAC chrI:978966-979046 62 1.48e-04 ggctcaggtt taggctta ggcttaggct chrV:18613286-18613366 23 1.48e-04 ggcttaggct taggctta ggcgtagcct chrII:2990304-2990384 55 1.48e-04 ggcttaggtt taggctta ggtttaggct chrX:14577744-14577824 70 1.48e-04 CGCACGATTA TAGGCCGA ACC chrII:337528-337608 73 1.48e-04 ggtttagggc taggctta chrI:746257-746337 25 1.48e-04 ggcgtaggct taggctta atctaaggct chrI:10404556-10404636 66 1.48e-04 ggcttaagct taggctta ggtttag chrII:4155247-4155327 41 1.48e-04 ggcttagact taggctta tggtgaagct chrII:10341772-10341852 64 1.82e-04 aaattccgaa ttagccga aaattagcc chrI:6436613-6436693 58 1.82e-04 aaaatcggca ttagccga ttagccgatt chrI:8357347-8357427 56 1.82e-04 tcggctaata ttagccga attagccgtt chrIII:1404498-1404578 31 1.82e-04 gttagccgaa ttagccga atttcagccg chrX:11003855-11003935 43 1.82e-04 attagccgaa ttagccga acgaatattt chrIII:2121103-2121183 45 1.82e-04 tagttatccg ttagccga ttttggccga chrI:5746526-5746606 10 1.82e-04 CGCACAGGT TTAGCCGA CCATTAGCCG chrII:12082234-12082314 18 1.82e-04 gttagttgaa ttagccga aatagccgat chrIV:6785342-6785422 31 2.28e-04 CGACACCACA CAAGCCGA TCCGTCGCAA chrIII:12131968-12132048 2 2.28e-04 t caagctta ggtttaggct chrIV:1221354-1221434 34 2.28e-04 AGCCATATAA CAAGCCGA TTTGCGACAT chrII:12824584-12824664 29 2.44e-04 ggcttgggct taggctga ggctgagacc chrIV:11567341-11567421 25 2.74e-04 TTCGGCTTCG TTAGCTGA ATTTCCCTTG chrIII:1054311-1054391 54 2.89e-04 GCCGCGCGTA CTAGCCTA GTACCGTCCC chrII:4153339-4153419 22 3.07e-04 agtctaagat taagcgta agcctaagcc chrX:11036465-11036545 24 3.52e-04 TTGATTCCTA CAAGCTGA CTTACTACAA chrX:9101300-9101380 41 3.79e-04 GGGGGCTGGA CAGGCTTA ATATTTTCCG chrV:4355195-4355275 72 3.79e-04 ggcttTGGCC CAGGCTTA A chrX:2874767-2874847 10 4.25e-04 AAACAGTTA TAAGCGGA TGGTCTCTTC chrX:4549063-4549143 30 4.40e-04 GTGCCCCCCG TTGGCTGA ATCGTAAAAG chrX:11065036-11065116 59 4.86e-04 AACGAGAGTG AAAGCCTA TCGACGCTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAGCYTA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:19998345-19998425 1.8e-05 40_[+4]_32 chrV:4630880-4630960 1.8e-05 61_[+4]_11 chrIV:2218039-2218119 1.8e-05 45_[+4]_27 chrII:14819812-14819892 1.8e-05 29_[+4]_43 chrV:17728505-17728585 1.8e-05 22_[+4]_50 chrV:18909860-18909940 1.8e-05 40_[+4]_32 chrV:19543696-19543776 1.8e-05 34_[+4]_38 chrV:17996303-17996383 1.8e-05 20_[+4]_52 chrV:18565828-18565908 1.8e-05 57_[+4]_15 chrII:4277792-4277872 1.8e-05 45_[+4]_27 chrV:2826109-2826189 1.8e-05 1_[+4]_71 chrIV:497314-497394 1.8e-05 4_[+4]_68 chrV:1848767-1848847 1.8e-05 24_[+4]_48 chrIV:3455585-3455665 1.8e-05 54_[+4]_18 chrIII:2647364-2647444 1.8e-05 69_[+4]_3 chrII:3912526-3912606 1.8e-05 3_[+4]_69 chrI:14524270-14524350 5.3e-05 33_[+4]_39 chrIV:1632787-1632867 5.3e-05 27_[+4]_45 chrIII:1718927-1719007 5.3e-05 27_[+4]_45 chrII:12436881-12436961 5.3e-05 2_[+4]_70 chrI:14282347-14282427 6.8e-05 57_[+4]_15 chrIII:12015389-12015469 8.5e-05 39_[+4]_33 chrII:12111137-12111217 0.00012 68_[+4]_4 chrII:3930173-3930253 0.00012 42_[+4]_30 chrI:978966-979046 0.00015 61_[+4]_11 chrV:18613286-18613366 0.00015 22_[+4]_50 chrII:2990304-2990384 0.00015 54_[+4]_18 chrX:14577744-14577824 0.00015 69_[+4]_3 chrII:337528-337608 0.00015 72_[+4] chrI:746257-746337 0.00015 24_[+4]_48 chrI:10404556-10404636 0.00015 65_[+4]_7 chrII:4155247-4155327 0.00015 40_[+4]_32 chrII:10341772-10341852 0.00018 63_[+4]_9 chrI:6436613-6436693 0.00018 57_[+4]_15 chrI:8357347-8357427 0.00018 55_[+4]_17 chrIII:1404498-1404578 0.00018 30_[+4]_42 chrX:11003855-11003935 0.00018 42_[+4]_30 chrIII:2121103-2121183 0.00018 44_[+4]_28 chrI:5746526-5746606 0.00018 9_[+4]_63 chrII:12082234-12082314 0.00018 17_[+4]_55 chrIV:6785342-6785422 0.00023 30_[+4]_42 chrIII:12131968-12132048 0.00023 1_[+4]_71 chrIV:1221354-1221434 0.00023 33_[+4]_39 chrII:12824584-12824664 0.00024 28_[+4]_44 chrIV:11567341-11567421 0.00027 24_[+4]_48 chrIII:1054311-1054391 0.00029 53_[+4]_19 chrII:4153339-4153419 0.00031 21_[+4]_51 chrX:11036465-11036545 0.00035 23_[+4]_49 chrX:9101300-9101380 0.00038 40_[+4]_32 chrV:4355195-4355275 0.00038 71_[+4]_1 chrX:2874767-2874847 0.00043 9_[+4]_63 chrX:4549063-4549143 0.00044 29_[+4]_43 chrX:11065036-11065116 0.00049 58_[+4]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAGCYTA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAAGCYTA width=8 seqs=53 chrV:19998345-19998425 ( 41) TAAGCCTA 1 chrV:4630880-4630960 ( 62) TAAGCCTA 1 chrIV:2218039-2218119 ( 46) TAAGCCTA 1 chrII:14819812-14819892 ( 30) TAAGCCTA 1 chrV:17728505-17728585 ( 23) TAAGCCTA 1 chrV:18909860-18909940 ( 41) TAAGCCTA 1 chrV:19543696-19543776 ( 35) TAAGCCTA 1 chrV:17996303-17996383 ( 21) TAAGCCTA 1 chrV:18565828-18565908 ( 58) TAAGCCTA 1 chrII:4277792-4277872 ( 46) TAAGCCTA 1 chrV:2826109-2826189 ( 2) TAAGCCTA 1 chrIV:497314-497394 ( 5) TAAGCCTA 1 chrV:1848767-1848847 ( 25) TAAGCCTA 1 chrIV:3455585-3455665 ( 55) TAAGCCTA 1 chrIII:2647364-2647444 ( 70) TAAGCCTA 1 chrII:3912526-3912606 ( 4) TAAGCCTA 1 chrI:14524270-14524350 ( 34) TAAGCTTA 1 chrIV:1632787-1632867 ( 28) TAAGCTTA 1 chrIII:1718927-1719007 ( 28) TAAGCTTA 1 chrII:12436881-12436961 ( 3) TAAGCTTA 1 chrI:14282347-14282427 ( 58) TAGGCCTA 1 chrIII:12015389-12015469 ( 40) TTAGCCTA 1 chrII:12111137-12111217 ( 69) CAAGCCTA 1 chrII:3930173-3930253 ( 43) CAAGCCTA 1 chrI:978966-979046 ( 62) TAGGCTTA 1 chrV:18613286-18613366 ( 23) TAGGCTTA 1 chrII:2990304-2990384 ( 55) TAGGCTTA 1 chrX:14577744-14577824 ( 70) TAGGCCGA 1 chrII:337528-337608 ( 73) TAGGCTTA 1 chrI:746257-746337 ( 25) TAGGCTTA 1 chrI:10404556-10404636 ( 66) TAGGCTTA 1 chrII:4155247-4155327 ( 41) TAGGCTTA 1 chrII:10341772-10341852 ( 64) TTAGCCGA 1 chrI:6436613-6436693 ( 58) TTAGCCGA 1 chrI:8357347-8357427 ( 56) TTAGCCGA 1 chrIII:1404498-1404578 ( 31) TTAGCCGA 1 chrX:11003855-11003935 ( 43) TTAGCCGA 1 chrIII:2121103-2121183 ( 45) TTAGCCGA 1 chrI:5746526-5746606 ( 10) TTAGCCGA 1 chrII:12082234-12082314 ( 18) TTAGCCGA 1 chrIV:6785342-6785422 ( 31) CAAGCCGA 1 chrIII:12131968-12132048 ( 2) CAAGCTTA 1 chrIV:1221354-1221434 ( 34) CAAGCCGA 1 chrII:12824584-12824664 ( 29) TAGGCTGA 1 chrIV:11567341-11567421 ( 25) TTAGCTGA 1 chrIII:1054311-1054391 ( 54) CTAGCCTA 1 chrII:4153339-4153419 ( 22) TAAGCGTA 1 chrX:11036465-11036545 ( 24) CAAGCTGA 1 chrX:9101300-9101380 ( 41) CAGGCTTA 1 chrV:4355195-4355275 ( 72) CAGGCTTA 1 chrX:2874767-2874847 ( 10) TAAGCGGA 1 chrX:4549063-4549143 ( 30) TTGGCTGA 1 chrX:11065036-11065116 ( 59) AAAGCCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAGCYTA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.60532 E= 4.7e-012 -384 -46 -1237 164 151 -1237 -1237 -20 147 -1237 6 -1237 -1237 -1237 209 -1237 -1237 210 -1237 -1237 -1237 141 -264 39 -1237 -1237 36 143 188 -1237 -1237 -1237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAGCYTA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 4.7e-012 0.018868 0.169811 0.000000 0.811321 0.773585 0.000000 0.000000 0.226415 0.754717 0.000000 0.245283 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.622642 0.037736 0.339623 0.000000 0.000000 0.301887 0.698113 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAGCYTA MEME-4 regular expression -------------------------------------------------------------------------------- T[AT][AG]GC[CT][TG]A -------------------------------------------------------------------------------- Time 16.66 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGCTAAY MEME-5 width = 8 sites = 28 llr = 239 E-value = 4.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGCTAAY MEME-5 Description -------------------------------------------------------------------------------- Simplified A :1:::aa: pos.-specific C 72:a:::4 probability G 17a:1::: matrix T 2:::9::6 bits 2.1 ** 1.9 ** ** 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.0 ****** (12.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGGCTAAT consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTAAY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10370590-10370670 11 1.51e-05 agtcggctag cggctaat tcggctaatc chrI:11645914-11645994 4 1.51e-05 tat cggctaat tcggctaaaa chrX:11003650-11003730 56 1.51e-05 ggctcaaatt cggctaat tcggctaact chrX:10383018-10383098 17 1.51e-05 gcggctaatt cggctaat gtctgctaaa chrI:8357347-8357427 38 2.87e-05 tttagccgac cggctaac tcggctaata chrX:11003855-11003935 61 2.87e-05 acgaatattt cggctaac tcggctaatg chrIV:5104408-5104488 48 2.87e-05 ggctaaaatt cggctaaC TTTATTGGTT chrIII:3758922-3759002 29 2.87e-05 tcggcgaatt cggctaac atcggccaaa chrX:342155-342235 35 2.87e-05 aggaaaacgt cggctaac ggctaaatcg chrX:4961679-4961759 57 4.38e-05 AAAGAGGCTG CCGCTAAT CGCTAATCTT chrX:3319475-3319555 8 4.38e-05 AGAATGA CCGCTAAT TATGGTATCG chrIII:8599145-8599225 34 4.38e-05 CCTATCCTTT CCGCTAAT TATCCATCGT chrI:86373-86453 51 6.06e-05 CAGAgagaca tggctaat agagtgtgca chrX:11036465-11036545 70 6.06e-05 ACAGTGAGAC TGGCTAAT ATT chrX:4551098-4551178 57 6.06e-05 GCGGGCACAT TGGCTAAT TGCGCAACGA chrIII:2121103-2121183 24 6.06e-05 tttggcagtt tggctaat acgtagttat chrV:1021603-1021683 31 8.93e-05 cagctaccgg ccgctaac cggccgctac chrIV:14390480-14390560 46 8.93e-05 GGGGGGGGGG GGGCTAAT CGGACAATGA chrX:5994167-5994247 40 8.93e-05 AACTTATAAC CCGCTAAC CCTTTCTTCA chrIII:8063683-8063763 54 8.93e-05 TAGAATGGGC GGGCTAAT CTGTGTCTAT chrV:8796470-8796550 58 8.93e-05 TTTGGGTCGG GGGCTAAT GTGAACGTTG chrX:4586293-4586373 1 1.22e-04 . cagctaat attagccgaa chrX:4556187-4556267 49 1.22e-04 GACCATCCAT CAGCTAAT TGTTGGCACG chrIV:1286171-1286251 63 1.36e-04 TCATATTTTC GGGCTAAC GTTAGCATTT chrX:15713328-15713408 65 1.65e-04 AAGATTAGAA CGGCGAAT AGGAATGT chrII:183299-183379 9 1.65e-04 CTTCTTCA CAGCTAAC AAAACTGATT chrII:12082234-12082314 36 1.65e-04 aatagccgat cggcgaat tcggctaacg chrIV:6785342-6785422 52 2.24e-04 GTCGCAAAGG TCGCTAAC ATTAGAGAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTAAY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10370590-10370670 1.5e-05 10_[+5]_62 chrI:11645914-11645994 1.5e-05 3_[+5]_69 chrX:11003650-11003730 1.5e-05 55_[+5]_17 chrX:10383018-10383098 1.5e-05 16_[+5]_56 chrI:8357347-8357427 2.9e-05 37_[+5]_35 chrX:11003855-11003935 2.9e-05 60_[+5]_12 chrIV:5104408-5104488 2.9e-05 47_[+5]_25 chrIII:3758922-3759002 2.9e-05 28_[+5]_44 chrX:342155-342235 2.9e-05 34_[+5]_38 chrX:4961679-4961759 4.4e-05 56_[+5]_16 chrX:3319475-3319555 4.4e-05 7_[+5]_65 chrIII:8599145-8599225 4.4e-05 33_[+5]_39 chrI:86373-86453 6.1e-05 50_[+5]_22 chrX:11036465-11036545 6.1e-05 69_[+5]_3 chrX:4551098-4551178 6.1e-05 56_[+5]_16 chrIII:2121103-2121183 6.1e-05 23_[+5]_49 chrV:1021603-1021683 8.9e-05 30_[+5]_42 chrIV:14390480-14390560 8.9e-05 45_[+5]_27 chrX:5994167-5994247 8.9e-05 39_[+5]_33 chrIII:8063683-8063763 8.9e-05 53_[+5]_19 chrV:8796470-8796550 8.9e-05 57_[+5]_15 chrX:4586293-4586373 0.00012 [+5]_72 chrX:4556187-4556267 0.00012 48_[+5]_24 chrIV:1286171-1286251 0.00014 62_[+5]_10 chrX:15713328-15713408 0.00017 64_[+5]_8 chrII:183299-183379 0.00017 8_[+5]_64 chrII:12082234-12082314 0.00017 35_[+5]_37 chrIV:6785342-6785422 0.00022 51_[+5]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTAAY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGCTAAY width=8 seqs=28 chrX:10370590-10370670 ( 11) CGGCTAAT 1 chrI:11645914-11645994 ( 4) CGGCTAAT 1 chrX:11003650-11003730 ( 56) CGGCTAAT 1 chrX:10383018-10383098 ( 17) CGGCTAAT 1 chrI:8357347-8357427 ( 38) CGGCTAAC 1 chrX:11003855-11003935 ( 61) CGGCTAAC 1 chrIV:5104408-5104488 ( 48) CGGCTAAC 1 chrIII:3758922-3759002 ( 29) CGGCTAAC 1 chrX:342155-342235 ( 35) CGGCTAAC 1 chrX:4961679-4961759 ( 57) CCGCTAAT 1 chrX:3319475-3319555 ( 8) CCGCTAAT 1 chrIII:8599145-8599225 ( 34) CCGCTAAT 1 chrI:86373-86453 ( 51) TGGCTAAT 1 chrX:11036465-11036545 ( 70) TGGCTAAT 1 chrX:4551098-4551178 ( 57) TGGCTAAT 1 chrIII:2121103-2121183 ( 24) TGGCTAAT 1 chrV:1021603-1021683 ( 31) CCGCTAAC 1 chrIV:14390480-14390560 ( 46) GGGCTAAT 1 chrX:5994167-5994247 ( 40) CCGCTAAC 1 chrIII:8063683-8063763 ( 54) GGGCTAAT 1 chrV:8796470-8796550 ( 58) GGGCTAAT 1 chrX:4586293-4586373 ( 1) CAGCTAAT 1 chrX:4556187-4556267 ( 49) CAGCTAAT 1 chrIV:1286171-1286251 ( 63) GGGCTAAC 1 chrX:15713328-15713408 ( 65) CGGCGAAT 1 chrII:183299-183379 ( 9) CAGCTAAC 1 chrII:12082234-12082314 ( 36) CGGCGAAT 1 chrIV:6785342-6785422 ( 52) TCGCTAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTAAY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5697 E= 4.3e+001 -1145 154 -72 -54 -134 -13 153 -1145 -1145 -1145 209 -1145 -1145 210 -1145 -1145 -1145 -1145 -172 184 188 -1145 -1145 -1145 188 -1145 -1145 -1145 -1145 61 -1145 131 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTAAY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 4.3e+001 0.000000 0.678571 0.142857 0.178571 0.107143 0.214286 0.678571 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.071429 0.928571 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.357143 0.000000 0.642857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTAAY MEME-5 regular expression -------------------------------------------------------------------------------- C[GC]GCTAA[TC] -------------------------------------------------------------------------------- Time 20.01 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4695130-4695210 9.95e-02 80 chrX:4553202-4553282 8.25e-01 80 chrX:5098578-5098658 4.36e-01 80 chrII:6713171-6713251 9.89e-01 80 chrII:3912526-3912606 8.65e-08 3_[+4(1.75e-05)]_4_[+4(1.75e-05)]_4_\ [+4(1.75e-05)]_7_[+1(1.51e-05)]_1_[+4(6.79e-05)]_6_[+3(1.59e-05)]_7 chrV:8796470-8796550 4.09e-02 57_[+5(8.93e-05)]_15 chrII:12960381-12960461 4.69e-02 80 chrV:1164360-1164440 3.47e-02 80 chrX:4554122-4554202 1.28e-01 80 chrII:8856680-8856760 8.57e-01 80 chrIV:14044066-14044146 9.69e-01 80 chrII:4155247-4155327 7.10e-06 1_[+1(4.18e-05)]_16_[+1(4.18e-05)]_\ 22_[+1(4.18e-05)]_4_[+1(4.18e-05)]_5 chrIV:10576642-10576722 4.97e-01 80 chrX:4555335-4555415 8.18e-01 80 chrI:14663278-14663358 8.83e-01 80 chrIII:8063683-8063763 1.41e-02 53_[+5(8.93e-05)]_19 chrI:8999739-8999819 4.73e-01 80 chrIII:8602260-8602340 1.73e-01 80 chrX:3094497-3094577 1.14e-01 80 chrX:4549063-4549143 4.36e-01 80 chrV:13610009-13610089 6.67e-01 80 chrX:4556187-4556267 1.08e-01 80 chrIV:8853631-8853711 2.10e-01 80 chrI:8680305-8680385 1.15e-01 80 chrIII:8597005-8597085 5.82e-01 80 chrIII:2647364-2647444 8.65e-08 12_[+1(1.51e-05)]_9_[+3(1.59e-05)]_\ 11_[+1(2.87e-05)]_1_[+4(1.75e-05)]_4_[+4(1.75e-05)]_3 chrIV:3221345-3221425 5.25e-01 80 chrI:527587-527667 7.45e-01 80 chrX:5994167-5994247 4.15e-02 39_[+5(8.93e-05)]_33 chrIV:3455585-3455665 4.38e-07 [+4(1.75e-05)]_4_[+4(1.75e-05)]_7_\ [+1(1.51e-05)]_1_[+4(1.75e-05)]_10_[+4(1.75e-05)]_4_[+4(1.75e-05)]_6 chrX:16029098-16029178 6.39e-01 80 chrV:1848767-1848847 9.26e-08 4_[+1(1.51e-05)]_9_[+1(1.51e-05)]_1_\ [+4(5.28e-05)]_[+1(1.51e-05)]_1_[+4(5.28e-05)]_2_[+4(1.75e-05)]_6_\ [+1(1.51e-05)]_1 chrIV:14390480-14390560 2.24e-02 45_[+5(8.93e-05)]_27 chrX:342155-342235 6.62e-06 15_[+5(1.51e-05)]_11_[+5(2.87e-05)]_\ 8_[+5(1.51e-05)]_22 chrII:12082234-12082314 2.37e-05 44_[+5(2.87e-05)]_28 chrIV:497314-497394 2.42e-07 4_[+4(1.75e-05)]_1_[+1(1.51e-05)]_\ 13_[+4(1.75e-05)]_16_[+4(1.75e-05)]_14 chrIII:3758922-3759002 2.37e-05 28_[+5(2.87e-05)]_12_[+5(2.87e-05)]_\ 24 chrX:5701589-5701669 6.29e-01 80 chrIV:11883723-11883803 7.22e-01 80 chrIII:5436489-5436569 3.02e-02 69_[+1(6.87e-05)]_3 chrI:10404556-10404636 2.24e-06 12_[+3(7.81e-05)]_10_[+3(7.81e-05)]_\ 6_[+1(4.18e-05)]_4_[+1(1.51e-05)]_2_[+3(7.81e-05)]_6 chrI:7755549-7755629 2.34e-01 80 chrX:8933695-8933775 8.97e-01 80 chrIV:4235512-4235592 2.50e-01 80 chrI:5746526-5746606 1.90e-04 80 chrI:746257-746337 6.90e-06 1_[+3(7.81e-05)]_12_[+1(4.18e-05)]_\ 8_[+3(7.81e-05)]_6_[+1(4.18e-05)]_4_[+1(4.18e-05)]_9 chrIII:13560872-13560952 9.03e-01 80 chrX:4395266-4395346 5.04e-06 40_[+1(1.51e-05)]_32 chrII:8641334-8641414 7.66e-01 80 chrI:7213590-7213670 2.32e-02 80 chrI:5780948-5781028 6.89e-01 80 chrI:4787830-4787910 1.97e-04 18_[+5(1.51e-05)]_25_[+5(2.87e-05)]_\ 21 chrV:20843945-20844025 1.11e-04 17_[+5(1.51e-05)]_28_[+5(1.51e-05)]_\ 19 chrII:12436881-12436961 2.95e-06 5_[+1(4.18e-05)]_10_[+1(4.18e-05)]_\ 49 chrV:2826109-2826189 5.21e-07 1_[+4(1.75e-05)]_4_[+4(1.75e-05)]_\ 24_[+3(3.17e-05)]_8_[+4(1.75e-05)]_11 chrIII:8599145-8599225 6.82e-04 33_[+5(4.38e-05)]_18_[+3(7.81e-05)]_\ 13 chrIV:5104408-5104488 4.48e-05 9_[+5(1.51e-05)]_30_[+5(2.87e-05)]_\ 25 chrIII:2121103-2121183 3.18e-05 23_[+5(6.06e-05)]_49 chrIII:1718927-1719007 2.34e-06 2_[+1(4.18e-05)]_4_[+1(1.51e-05)]_2_\ [+1(1.51e-05)]_4_[+1(4.18e-05)]_16_[+1(4.18e-05)]_12 chrX:9989041-9989121 6.26e-01 80 chrX:16626970-16627050 9.94e-01 80 chrX:10383018-10383098 1.02e-05 7_[+5(1.51e-05)]_1_[+5(1.51e-05)]_\ 25_[+5(1.51e-05)]_1_[+5(1.51e-05)]_14 chrIII:8839982-8840062 8.06e-01 80 chrX:3596525-3596605 8.44e-01 80 chrII:4152190-4152270 2.99e-06 20_[+1(5.36e-05)]_8_[+1(1.51e-05)]_\ 22_[+1(4.18e-05)]_6 chrX:11003650-11003730 7.90e-06 8_[+5(1.51e-05)]_1_[+5(1.51e-05)]_\ 30_[+5(1.51e-05)]_1_[+5(2.87e-05)]_8 chrX:2874767-2874847 4.69e-01 80 chrV:14806550-14806630 1.14e-01 80 chrIII:711205-711285 1.03e-01 80 chrX:4809449-4809529 4.88e-01 80 chrX:6066767-6066847 1.00e+00 80 chrX:2152200-2152280 8.56e-01 80 chrII:14571937-14572017 1.72e-03 80 chrIV:1221354-1221434 1.02e-01 80 chrII:536517-536597 9.78e-01 80 chrX:7937119-7937199 2.55e-03 80 chrIV:6996339-6996419 9.76e-01 80 chrIII:11558390-11558470 5.30e-01 80 chrII:337528-337608 7.10e-06 9_[+1(4.18e-05)]_10_[+1(5.36e-05)]_\ 45 chrII:1154073-1154153 9.75e-01 80 chrIV:11719355-11719435 3.39e-02 80 chrII:10621067-10621147 7.77e-01 80 chrIV:8051948-8052028 7.91e-01 80 chrIII:1053187-1053267 2.30e-02 80 chrV:4355195-4355275 7.71e-06 14_[+1(4.18e-05)]_34_[+1(4.18e-05)]_\ 16 chrII:8749265-8749345 8.71e-01 80 chrI:6279382-6279462 5.85e-04 64_[+4(8.46e-05)]_8 chrX:4791802-4791882 9.75e-01 80 chrX:692998-693078 1.90e-01 80 chrII:14567985-14568065 9.45e-01 80 chrV:9395283-9395363 3.55e-01 80 chrX:10429421-10429501 9.92e-01 80 chrIII:39675-39755 4.16e-03 13_[+3(9.57e-05)]_59 chrIII:7926106-7926186 9.51e-01 80 chrV:6934857-6934937 4.31e-03 66_[+2(6.70e-05)]_6 chrII:8529450-8529530 8.13e-01 80 chrX:5060693-5060773 7.99e-01 80 chrII:13107600-13107680 4.69e-01 80 chrII:723-803 9.75e-01 80 chrIII:12015389-12015469 1.50e-07 [+1(2.87e-05)]_13_[+4(1.75e-05)]_16_\ [+4(1.75e-05)]_[+3(1.59e-05)]_19 chrX:11003855-11003935 7.90e-06 60_[+5(2.87e-05)]_1_[+5(1.51e-05)]_\ 3 chrX:14577744-14577824 4.13e-02 80 chrI:530425-530505 1.45e-02 20_[+2(2.60e-05)]_52 chrX:2928000-2928080 5.25e-01 80 chrX:9494815-9494895 4.39e-02 80 chrI:11540469-11540549 1.70e-06 7_[+1(2.87e-05)]_3_[+3(3.17e-05)]_\ 54 chrI:11645914-11645994 4.59e-06 3_[+5(1.51e-05)]_17_[+2(6.70e-05)]_\ 14_[+5(1.51e-05)]_1_[+5(2.87e-05)]_13 chrX:3319475-3319555 2.12e-03 7_[+5(4.38e-05)]_65 chrV:14426144-14426224 1.61e-01 80 chrII:4277792-4277872 4.29e-07 3_[+4(1.75e-05)]_28_[+4(1.75e-05)]_\ [+3(9.57e-05)]_2_[+4(1.75e-05)]_15 chrII:2990304-2990384 2.34e-06 9_[+1(4.18e-05)]_26_[+3(7.81e-05)]_\ 4_[+3(7.81e-05)]_6_[+1(1.51e-05)]_3 chrIII:1404498-1404578 1.02e-05 50_[+5(2.87e-05)]_1_[+5(1.51e-05)]_\ 13 chrV:1021603-1021683 1.37e-01 30_[+5(8.93e-05)]_42 chrV:11222055-11222135 9.12e-01 80 chrX:15487308-15487388 9.72e-01 80 chrIV:12816734-12816814 2.62e-02 19_[+3(4.93e-05)]_53 chrV:19231304-19231384 8.83e-06 14_[+1(4.18e-05)]_4_[+1(4.18e-05)]_\ 38_[+1(4.18e-05)] chrX:5024496-5024576 7.09e-01 80 chrIV:11584875-11584955 9.50e-01 80 chrIV:1632787-1632867 2.34e-06 [+1(1.51e-05)]_4_[+1(1.51e-05)]_4_\ [+1(1.51e-05)]_4_[+1(1.51e-05)]_4_[+1(1.51e-05)]_4_[+1(4.18e-05)]_12 chrI:9129780-9129860 1.04e-01 80 chrII:4103976-4104056 7.65e-01 80 chrV:18613286-18613366 1.26e-05 13_[+1(4.18e-05)]_4_[+1(4.18e-05)]_\ 10_[+1(4.18e-05)]_20_[+3(7.81e-05)]_1 chrV:6970242-6970322 9.45e-01 80 chrX:10318564-10318644 1.69e-01 80 chrI:8357347-8357427 5.55e-06 37_[+5(2.87e-05)]_1_[+5(1.51e-05)]_\ 26 chrIII:12800719-12800799 3.13e-01 80 chrX:17413993-17414073 4.74e-01 80 chrX:2713122-2713202 2.09e-01 80 chrII:9645123-9645203 7.46e-01 80 chrII:13053663-13053743 8.20e-01 80 chrX:4586293-4586373 5.56e-05 80 chrX:2583458-2583538 7.00e-01 80 chrX:8426292-8426372 6.41e-01 80 chrX:4552283-4552363 9.35e-01 80 chrII:4098937-4099017 9.53e-01 80 chrIV:17453174-17453254 2.60e-02 1_[+3(3.17e-05)]_71 chrV:6542259-6542339 7.19e-01 80 chrV:6105460-6105540 5.78e-01 80 chrX:4513771-4513851 1.12e-01 80 chrIV:1286171-1286251 3.45e-02 80 chrI:775815-775895 2.03e-06 1_[+1(4.18e-05)]_10_[+1(4.18e-05)]_\ 53 chrV:19623687-19623767 3.86e-01 80 chrV:8044107-8044187 9.69e-01 80 chrV:19429780-19429860 9.96e-01 80 chrIV:3867237-3867317 7.26e-01 80 chrIV:14391923-14392003 2.17e-01 80 chrX:8285484-8285564 7.47e-02 80 chrX:13526660-13526740 4.94e-01 80 chrIV:11567341-11567421 1.41e-01 80 chrII:14678389-14678469 6.83e-01 80 chrIV:16400532-16400612 9.90e-01 80 chrIII:9642295-9642375 6.03e-01 80 chrII:7678662-7678742 3.73e-01 80 chrI:4516286-4516366 4.57e-01 80 chrI:6436613-6436693 1.20e-03 80 chrIII:12131968-12132048 1.82e-06 16_[+1(4.18e-05)]_2_[+3(1.59e-05)]_\ 4_[+3(1.59e-05)]_[+1(4.18e-05)]_16_[+1(4.18e-05)]_2 chrI:978966-979046 2.34e-06 4_[+1(4.18e-05)]_4_[+1(1.51e-05)]_4_\ [+1(4.18e-05)]_4_[+1(4.18e-05)]_16_[+1(4.18e-05)]_8 chrX:11065036-11065116 1.79e-01 80 chrIII:11468010-11468090 9.38e-01 80 chrV:7247196-7247276 5.17e-01 80 chrX:4551098-4551178 3.99e-02 56_[+5(6.06e-05)]_16 chrII:10203891-10203971 4.74e-01 80 chrIV:53202-53282 6.43e-02 80 chrII:3930173-3930253 3.09e-08 3_[+4(1.75e-05)]_9_[+4(1.75e-05)]_1_\ [+1(2.87e-05)]_43 chrIV:12403614-12403694 9.52e-01 80 chrI:10821430-10821510 7.28e-01 80 chrIV:9983114-9983194 5.09e-01 80 chrII:183299-183379 1.89e-01 80 chrV:18565828-18565908 5.49e-07 51_[+4(1.75e-05)]_21 chrV:17996303-17996383 5.49e-07 6_[+1(2.87e-05)]_6_[+4(1.75e-05)]_\ 15_[+4(1.75e-05)]_15_[+4(1.75e-05)]_6 chrII:6409273-6409353 1.39e-01 80 chrIV:4437945-4438025 4.41e-01 80 chrIV:12999051-12999131 5.84e-01 80 chrI:11782403-11782483 6.35e-01 80 chrIII:2414145-2414225 1.79e-02 5_[+1(6.87e-05)]_67 chrX:9101300-9101380 9.80e-02 80 chrI:1256155-1256235 2.11e-01 80 chrV:12874832-12874912 1.02e-01 80 chrX:4961679-4961759 5.33e-02 56_[+5(4.38e-05)]_16 chrII:9266375-9266455 9.63e-01 80 chrIII:8602463-8602543 4.04e-04 22_[+3(7.81e-05)]_50 chrX:15713328-15713408 4.95e-02 80 chrIV:12617383-12617463 1.69e-01 80 chrIII:1054311-1054391 6.67e-02 80 chrII:14611578-14611658 2.50e-02 17_[+2(4.04e-05)]_55 chrIII:5942244-5942324 2.31e-01 80 chrX:11057219-11057299 7.03e-01 80 chrII:10341772-10341852 1.85e-02 80 chrX:2330750-2330830 8.06e-01 80 chrI:14524270-14524350 3.54e-06 6_[+1(4.18e-05)]_4_[+1(4.18e-05)]_7_\ [+4(5.28e-05)]_19_[+1(4.18e-05)]_12 chrIV:6785342-6785422 1.49e-02 80 chrX:15310404-15310484 9.98e-01 80 chrX:11036465-11036545 1.20e-02 69_[+5(6.06e-05)]_3 chrX:457523-457603 9.94e-01 80 chrIV:14070669-14070749 8.15e-01 80 chrV:19543696-19543776 4.29e-07 4_[+4(1.75e-05)]_7_[+1(2.87e-05)]_7_\ [+4(1.75e-05)]_1_[+1(2.87e-05)]_3_[+3(9.57e-05)]_2_[+4(1.75e-05)]_8 chrIV:11211732-11211812 4.66e-02 80 chrIII:647463-647543 2.19e-01 80 chrI:7213789-7213869 9.82e-01 80 chrIII:2401658-2401738 3.53e-01 80 chrIV:8170458-8170538 9.72e-01 80 chrIII:8504485-8504565 1.18e-02 80 chrII:9075005-9075085 8.34e-01 80 chrIII:569601-569681 9.89e-01 80 chrIII:3915919-3915999 8.53e-01 80 chrI:3671840-3671920 9.06e-01 80 chrX:11600676-11600756 7.72e-01 80 chrII:4581005-4581085 9.92e-01 80 chrX:1244363-1244443 1.61e-01 80 chrIII:7623148-7623228 1.31e-01 80 chrIV:2809376-2809456 9.74e-01 80 chrV:13020795-13020875 6.79e-01 80 chrII:15218114-15218194 7.90e-01 80 chrX:7720954-7721034 1.73e-01 80 chrI:1874662-1874742 4.98e-02 80 chrII:12111137-12111217 8.42e-05 80 chrIV:4518275-4518355 2.56e-01 80 chrV:6352522-6352602 4.45e-01 80 chrV:1115663-1115743 5.14e-06 36_[+1(4.18e-05)]_36 chrX:6092689-6092769 7.77e-01 80 chrX:9402158-9402238 6.24e-01 80 chrX:9088792-9088872 4.25e-01 80 chrV:18909860-18909940 2.72e-07 4_[+4(1.75e-05)]_25_[+1(1.51e-05)]_\ 10_[+1(1.51e-05)]_17 chrI:6379201-6379281 9.39e-01 80 chrII:8751101-8751181 1.33e-01 80 chrI:11084918-11084998 1.00e+00 80 chrX:11726514-11726594 5.95e-01 80 chrX:3314120-3314200 5.77e-01 80 chrIII:4010294-4010374 9.45e-02 80 chrII:4153339-4153419 1.66e-07 3_[+4(1.75e-05)]_16_[+4(1.75e-05)]_\ 2_[+2(2.60e-05)]_35 chrII:12824584-12824664 3.83e-06 25_[+1(4.18e-05)]_17_[+1(4.18e-05)]_\ 4_[+1(1.51e-05)]_10 chrV:17728505-17728585 7.76e-08 [+3(3.17e-05)]_5_[+1(1.51e-05)]_1_\ [+4(1.75e-05)]_1_[+1(1.51e-05)]_1_[+4(5.28e-05)]_4_[+4(5.28e-05)]_6_\ [+3(4.93e-05)]_6 chrII:14819812-14819892 4.16e-07 2_[+1(2.87e-05)]_19_[+4(1.75e-05)]_\ 7_[+1(2.87e-05)]_19_[+4(1.75e-05)]_1 chrI:8987243-8987323 9.32e-01 80 chrX:15108009-15108089 7.24e-03 29_[+3(1.59e-05)]_43 chrIV:2218039-2218119 3.03e-07 6_[+1(2.87e-05)]_1_[+4(5.28e-05)]_1_\ [+1(1.51e-05)]_3_[+3(3.17e-05)]_2_[+4(1.75e-05)]_4_[+4(1.75e-05)]_15 chrI:86373-86453 4.69e-02 50_[+5(6.06e-05)]_22 chrX:853028-853108 7.96e-02 80 chrI:14282347-14282427 2.34e-06 42_[+1(1.51e-05)]_7_[+4(6.79e-05)]_\ 1_[+1(4.18e-05)]_6 chrX:10370590-10370670 2.46e-03 10_[+5(1.51e-05)]_1_[+5(1.51e-05)]_\ 12_[+5(2.87e-05)]_8_[+5(1.51e-05)]_17 chrI:14309145-14309225 9.87e-01 80 chrV:10679329-10679409 9.90e-01 80 chrIV:11120363-11120443 7.42e-01 80 chrV:18016838-18016918 7.10e-05 16_[+5(1.51e-05)]_56 chrIII:217039-217119 1.00e+00 80 chrV:4630880-4630960 6.32e-07 1_[+4(8.46e-05)]_4_[+4(1.75e-05)]_\ 13_[+1(2.87e-05)]_4_[+1(1.51e-05)]_7_[+4(1.75e-05)]_3_[+4(1.75e-05)] chrI:6843417-6843497 6.15e-01 80 chrV:19998345-19998425 1.66e-07 10_[+4(1.75e-05)]_1_[+1(5.36e-05)]_\ 13_[+4(1.75e-05)]_8_[+2(2.60e-05)]_16 chrI:3248266-3248346 3.95e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************