******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/gmeb-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:5808298-5808378 1.0000 80 chrV:1433251-1433331 1.0000 80 chrV:1432600-1432680 1.0000 80 chrI:5811418-5811498 1.0000 80 chrI:5810161-5810241 1.0000 80 chrIV:10697732-10697812 1.0000 80 chrII:11599907-11599987 1.0000 80 chrII:2638212-2638292 1.0000 80 chrI:14163335-14163415 1.0000 80 chrIII:10907848-10907928 1.0000 80 chrIV:9403910-9403990 1.0000 80 chrIII:12278932-12279012 1.0000 80 chrV:12450600-12450680 1.0000 80 chrII:2032396-2032476 1.0000 80 chrIII:9089595-9089675 1.0000 80 chrI:6626894-6626974 1.0000 80 chrI:3910675-3910755 1.0000 80 chrII:1437698-1437778 1.0000 80 chrIII:5483879-5483959 1.0000 80 chrIV:992122-992202 1.0000 80 chrV:6043443-6043523 1.0000 80 chrIII:8614646-8614726 1.0000 80 chrIV:4357441-4357521 1.0000 80 chrIV:1177842-1177922 1.0000 80 chrV:12184466-12184546 1.0000 80 chrI:14839832-14839912 1.0000 80 chrIII:10755137-10755217 1.0000 80 chrIV:8869801-8869881 1.0000 80 chrIII:4058059-4058139 1.0000 80 chrI:4829882-4829962 1.0000 80 chrIII:12377426-12377506 1.0000 80 chrIII:11580669-11580749 1.0000 80 chrII:9108622-9108702 1.0000 80 chrIII:3921802-3921882 1.0000 80 chrII:10783353-10783433 1.0000 80 chrV:4339648-4339728 1.0000 80 chrIV:2670814-2670894 1.0000 80 chrIV:773084-773164 1.0000 80 chrI:5138058-5138138 1.0000 80 chrV:5596531-5596611 1.0000 80 chrIII:11565756-11565836 1.0000 80 chrV:14456774-14456854 1.0000 80 chrIII:10093254-10093334 1.0000 80 chrV:15395095-15395175 1.0000 80 chrIII:9614368-9614448 1.0000 80 chrIII:10754555-10754635 1.0000 80 chrII:10579025-10579105 1.0000 80 chrI:5189962-5190042 1.0000 80 chrIII:5587087-5587167 1.0000 80 chrIII:3070174-3070254 1.0000 80 chrII:10350636-10350716 1.0000 80 chrIV:7165867-7165947 1.0000 80 chrI:7643295-7643375 1.0000 80 chrIII:491250-491330 1.0000 80 chrI:5809402-5809482 1.0000 80 chrI:534303-534383 1.0000 80 chrII:12678593-12678673 1.0000 80 chrIII:9571015-9571095 1.0000 80 chrI:6038176-6038256 1.0000 80 chrI:5815605-5815685 1.0000 80 chrV:3743356-3743436 1.0000 80 chrIII:1207997-1208077 1.0000 80 chrIV:11125756-11125836 1.0000 80 chrI:10633209-10633289 1.0000 80 chrI:719955-720035 1.0000 80 chrI:13161940-13162020 1.0000 80 chrI:5871970-5872050 1.0000 80 chrI:3600862-3600942 1.0000 80 chrIII:2331368-2331448 1.0000 80 chrI:1895081-1895161 1.0000 80 chrI:14560353-14560433 1.0000 80 chrI:9581593-9581673 1.0000 80 chrI:4788569-4788649 1.0000 80 chrI:12426868-12426948 1.0000 80 chrV:9930769-9930849 1.0000 80 chrIV:12334885-12334965 1.0000 80 chrI:10185734-10185814 1.0000 80 chrI:3605777-3605857 1.0000 80 chrIII:9747316-9747396 1.0000 80 chrII:6321168-6321248 1.0000 80 chrV:14991005-14991085 1.0000 80 chrIV:15382680-15382760 1.0000 80 chrIV:6369635-6369715 1.0000 80 chrIII:5405777-5405857 1.0000 80 chrV:18086932-18087012 1.0000 80 chrV:14645949-14646029 1.0000 80 chrII:13083899-13083979 1.0000 80 chrI:443584-443664 1.0000 80 chrV:14734516-14734596 1.0000 80 chrII:11132694-11132774 1.0000 80 chrI:5937097-5937177 1.0000 80 chrIII:4878422-4878502 1.0000 80 chrIII:12152302-12152382 1.0000 80 chrII:2504577-2504657 1.0000 80 chrIII:6869442-6869522 1.0000 80 chrIV:10242866-10242946 1.0000 80 chrV:8302691-8302771 1.0000 80 chrV:11733639-11733719 1.0000 80 chrIV:2916174-2916254 1.0000 80 chrII:9706370-9706450 1.0000 80 chrI:13367747-13367827 1.0000 80 chrV:3468613-3468693 1.0000 80 chrII:2204241-2204321 1.0000 80 chrI:13840050-13840130 1.0000 80 chrIII:7074132-7074212 1.0000 80 chrII:5501450-5501530 1.0000 80 chrII:4828222-4828302 1.0000 80 chrIII:10248580-10248660 1.0000 80 chrI:5810801-5810881 1.0000 80 chrII:8566229-8566309 1.0000 80 chrII:8276249-8276329 1.0000 80 chrI:4302346-4302426 1.0000 80 chrV:6838761-6838841 1.0000 80 chrV:1434563-1434643 1.0000 80 chrIII:5267687-5267767 1.0000 80 chrV:156513-156593 1.0000 80 chrIII:2805244-2805324 1.0000 80 chrV:5204331-5204411 1.0000 80 chrIII:6968437-6968517 1.0000 80 chrIV:2275745-2275825 1.0000 80 chrI:3741267-3741347 1.0000 80 chrII:10714388-10714468 1.0000 80 chrV:15578520-15578600 1.0000 80 chrV:20704165-20704245 1.0000 80 chrV:4693150-4693230 1.0000 80 chrIV:6248614-6248694 1.0000 80 chrI:9962069-9962149 1.0000 80 chrIII:13439572-13439652 1.0000 80 chrIII:11974541-11974621 1.0000 80 chrI:7940761-7940841 1.0000 80 chrIII:6889527-6889607 1.0000 80 chrV:5939673-5939753 1.0000 80 chrIII:8628528-8628608 1.0000 80 chrIV:5188190-5188270 1.0000 80 chrV:965053-965133 1.0000 80 chrIV:1309992-1310072 1.0000 80 chrII:6974176-6974256 1.0000 80 chrIII:12739088-12739168 1.0000 80 chrV:6593848-6593928 1.0000 80 chrIV:11142604-11142684 1.0000 80 chrIII:13341038-13341118 1.0000 80 chrII:8940518-8940598 1.0000 80 chrIII:6615207-6615287 1.0000 80 chrIV:13206041-13206121 1.0000 80 chrV:8212-8292 1.0000 80 chrI:12183248-12183328 1.0000 80 chrI:10565988-10566068 1.0000 80 chrI:3466840-3466920 1.0000 80 chrV:1893042-1893122 1.0000 80 chrV:22001-22081 1.0000 80 chrII:6245448-6245528 1.0000 80 chrIII:1533246-1533326 1.0000 80 chrX:9680405-9680485 1.0000 80 chrV:8267413-8267493 1.0000 80 chrIV:9386180-9386260 1.0000 80 chrIV:7632685-7632765 1.0000 80 chrII:14413204-14413284 1.0000 80 chrI:11038869-11038949 1.0000 80 chrIV:4031221-4031301 1.0000 80 chrIII:10114816-10114896 1.0000 80 chrV:7955335-7955415 1.0000 80 chrIII:7068823-7068903 1.0000 80 chrI:14101155-14101235 1.0000 80 chrII:386102-386182 1.0000 80 chrIII:4986959-4987039 1.0000 80 chrX:16163569-16163649 1.0000 80 chrI:15035907-15035987 1.0000 80 chrV:16589-16669 1.0000 80 chrV:8031323-8031403 1.0000 80 chrIII:9947177-9947257 1.0000 80 chrII:13834974-13835054 1.0000 80 chrI:7559641-7559721 1.0000 80 chrI:5319325-5319405 1.0000 80 chrIV:10463301-10463381 1.0000 80 chrIII:8809707-8809787 1.0000 80 chrII:9169599-9169679 1.0000 80 chrIII:9228347-9228427 1.0000 80 chrIII:8733865-8733945 1.0000 80 chrI:9226824-9226904 1.0000 80 chrII:8577533-8577613 1.0000 80 chrII:6026794-6026874 1.0000 80 chrX:1845596-1845676 1.0000 80 chrIII:9776118-9776198 1.0000 80 chrIV:1239861-1239941 1.0000 80 chrV:15298731-15298811 1.0000 80 chrIV:9525108-9525188 1.0000 80 chrIII:7758715-7758795 1.0000 80 chrIII:13426196-13426276 1.0000 80 chrI:6418834-6418914 1.0000 80 chrV:16499180-16499260 1.0000 80 chrI:6970259-6970339 1.0000 80 chrV:20162537-20162617 1.0000 80 chrII:12185030-12185110 1.0000 80 chrIV:275294-275374 1.0000 80 chrII:14667890-14667970 1.0000 80 chrV:17714467-17714547 1.0000 80 chrV:10031554-10031634 1.0000 80 chrIII:4650251-4650331 1.0000 80 chrII:11440323-11440403 1.0000 80 chrI:8852371-8852451 1.0000 80 chrIV:3988810-3988890 1.0000 80 chrI:13859238-13859318 1.0000 80 chrIV:17440562-17440642 1.0000 80 chrV:8221288-8221368 1.0000 80 chrIV:874836-874916 1.0000 80 chrIV:297015-297095 1.0000 80 chrI:342968-343048 1.0000 80 chrI:3865995-3866075 1.0000 80 chrIII:5190355-5190435 1.0000 80 chrI:10622862-10622942 1.0000 80 chrII:6536101-6536181 1.0000 80 chrIII:6710171-6710251 1.0000 80 chrIII:11526550-11526630 1.0000 80 chrIII:12534067-12534147 1.0000 80 chrV:13437646-13437726 1.0000 80 chrV:1207126-1207206 1.0000 80 chrIV:8511213-8511293 1.0000 80 chrI:12937875-12937955 1.0000 80 chrV:9645674-9645754 1.0000 80 chrV:10280252-10280332 1.0000 80 chrIV:3694807-3694887 1.0000 80 chrI:11497930-11498010 1.0000 80 chrIII:10908673-10908753 1.0000 80 chrIV:12209166-12209246 1.0000 80 chrIII:5499098-5499178 1.0000 80 chrV:7186755-7186835 1.0000 80 chrIII:902029-902109 1.0000 80 chrIV:2902110-2902190 1.0000 80 chrV:20004700-20004780 1.0000 80 chrIII:9912633-9912713 1.0000 80 chrV:19405516-19405596 1.0000 80 chrIII:11026792-11026872 1.0000 80 chrIII:9794152-9794232 1.0000 80 chrI:7762583-7762663 1.0000 80 chrIII:4935055-4935135 1.0000 80 chrIII:2123833-2123913 1.0000 80 chrIV:17461480-17461560 1.0000 80 chrIV:3900002-3900082 1.0000 80 chrI:11701756-11701836 1.0000 80 chrII:11022173-11022253 1.0000 80 chrV:10536207-10536287 1.0000 80 chrIII:10905259-10905339 1.0000 80 chrIII:10642949-10643029 1.0000 80 chrIV:1328905-1328985 1.0000 80 chrIII:13604049-13604129 1.0000 80 chrIV:6415305-6415385 1.0000 80 chrV:15059729-15059809 1.0000 80 chrII:7807093-7807173 1.0000 80 chrV:10661590-10661670 1.0000 80 chrI:3438939-3439019 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_gmeb-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/gmeb-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.292 C 0.208 G 0.209 T 0.29 Background letter frequencies (from file dataset with add-one prior applied): A 0.292 C 0.208 G 0.209 T 0.29 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF DNGCGCGH MEME-1 width = 8 sites = 173 llr = 1128 E-value = 3.1e-079 ******************************************************************************** -------------------------------------------------------------------------------- Motif DNGCGCGH MEME-1 Description -------------------------------------------------------------------------------- Simplified A 33::::13 pos.-specific C 131a:914 probability G 329:a171 matrix T 32::::13 bits 2.3 ** 2.0 *** 1.8 **** 1.6 **** Relative 1.4 **** Entropy 1.1 **** (9.4 bits) 0.9 **** 0.7 ***** 0.5 ***** 0.2 * ****** 0.0 -------- Multilevel AAGCGCGC consensus GC T sequence TG A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNGCGCGH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:14560353-14560433 27 3.57e-06 AACACCTTCT GCGCGCGC ATTCAAATTT chrIII:8809707-8809787 32 8.59e-06 TTTATCTACG GAGCGCGC TTGCGACAGT chrI:3466840-3466920 55 8.59e-06 TTGTGCGATG GAGCGCGC TTGCTATTTT chrIII:12739088-12739168 57 8.59e-06 ttgttcgatg gagcgcgc ttgctttatt chrIII:10248580-10248660 49 8.59e-06 TTTTGCGGTA GAGCGCGC TTGCACTGTG chrV:11733639-11733719 47 8.59e-06 ATTGTCATTG GAGCGCGC TTTCCCCAAC chrII:2504577-2504657 53 8.59e-06 CGTGCCAATG GAGCGCGC TTTCAATTTT chrIII:491250-491330 57 8.59e-06 CGTGCcggtg gagcgcgc ttgcattttt chrIII:11565756-11565836 53 8.59e-06 ATTATCGGTG GAGCGCGC ATGCTTTTTT chrI:5138058-5138138 49 8.59e-06 TTTTTCCAGG GAGCGCGC GAAACACATG chrIV:773084-773164 50 8.59e-06 gagtccagtg gagcgcgc ttgcattttt chrI:15035907-15035987 55 1.72e-05 CCGAAATAAC GGGCGCGC GTGTTGTTTA chrV:156513-156593 57 1.72e-05 ACACTAAACA GGGCGCGC TAACGACACT chrV:15059729-15059809 9 2.21e-05 GCAAGGTT TCGCGCGC TCGCTCCGTA chrIV:17461480-17461560 24 2.21e-05 ATTTTGGGTT TCGCGCGC TCGTTCAAAC chrIV:5188190-5188270 27 2.21e-05 ATTTTTAATT TCGCGCGC AAAAAAAGTT chrIII:4878422-4878502 23 2.21e-05 AAATTTGTCT TCGCGCGC TACTCGAAAC chrV:18086932-18087012 20 2.21e-05 AATTCGAATT TCGCGCGC ATTTCACCGT chrIV:3694807-3694887 26 3.41e-05 GTAAAAATGC AAGCGCGC TCTACCGCAC chrIV:15382680-15382760 42 3.41e-05 taattcgtac aagcgcgc tccatcgata chrIII:1207997-1208077 27 3.41e-05 GCAATAATGC AAGCGCGC TCCACTGTAC chrV:4339648-4339728 24 3.41e-05 aaaaacgagc aagcgcgc tccatcgcta chrIII:12278932-12279012 30 3.41e-05 gacatgaagc aagcgcgc cccaatgtga chrIV:8511213-8511293 67 5.11e-05 AACGAGAAAT GCGCGCGA GCGGCC chrIII:6710171-6710251 55 5.11e-05 ACTAATAAAT GCGCGCGA ATTTTAAAAA chrI:12183248-12183328 12 5.11e-05 GAAATAACGC TAGCGCGC TTTGTTTATC chrIV:12334885-12334965 42 5.11e-05 TTGAAAAATT GCGCGCGA AAGTTTCAAG chrV:19405516-19405596 20 6.80e-05 gaatccgatg gagcgcgt ttgAGAAAAT chrIV:2902110-2902190 55 6.80e-05 TTGTCCAATG GAGCGCGT TTGCGCAACT chrI:3865995-3866075 62 6.80e-05 TTGTACAACG GAGCGCGT TTGGTTAGAG chrV:8221288-8221368 30 6.80e-05 CGAAATAACA GAGCGCGT GTTGTTTAGC chrIV:13206041-13206121 50 6.80e-05 GAGGTCAATG GAGCGCGT TTGCTCTCAC chrII:8940518-8940598 35 6.80e-05 AAAAGAATCG GAGCGCGT TTGCAACAGG chrI:4788569-4788649 63 6.80e-05 CGTATCAATA GAGCGCGT TGTCATAACT chrIII:5587087-5587167 43 6.80e-05 CTGTCAGATG GAGCGCGT TTGGTGCATG chrIII:12377426-12377506 25 6.80e-05 ATGTTCAATG GAGCGCGT TTGCCTAGCA chrIV:9403910-9403990 54 6.80e-05 AAGTGCGGTG GAGCGCGT TTGCACCGGA chrII:2638212-2638292 63 6.80e-05 ATGTGCGGTG GAGCGCGT TTGCTTATTT chrV:5204331-5204411 29 8.70e-05 AATTTGAATT ACGCGCGT ATATCAGTGT chrIII:12152302-12152382 51 8.70e-05 TTTATCAACA GGGCGCGT TTGCACTTTT chrIII:9614368-9614448 47 8.70e-05 GTGTACAACA GGGCGCGT TTGCATTATT chrIV:12209166-12209246 20 1.06e-04 ACGGTAAACA ACGCGCGA TTCGTAATCT chrIII:9228347-9228427 25 1.06e-04 TAATAGAGGA ACGCGCGA AAACGAGACG chrIV:11142604-11142684 60 1.06e-04 GTCAAATTTC ACGCGCGA AATTTAAACA chrIII:7074132-7074212 50 1.06e-04 AGAACCATTT ACGCGCGA AGTTTGAATA chrII:11132694-11132774 31 1.06e-04 TTTAGCAATG GGGCGCGA TTGCAGTGTT chrV:14734516-14734596 11 1.06e-04 ATATGAGGTT TCGCGCGT GGTGTGCGGT chrIII:5405777-5405857 19 1.06e-04 CTCTGTTGAC ACGCGCGA GAAAGACGAG chrIII:5190355-5190435 10 1.30e-04 ATTTGAATT TCGCGCGA AAATGAGTGT chrIV:11125756-11125836 26 1.30e-04 GAAATTTTGA ATGCGCGC CGAAAGTTGT chrV:13437646-13437726 35 1.63e-04 AAAATGACGG AAGCGCGA ATTGTTTAGT chrIV:9525108-9525188 20 1.63e-04 CGGAGTGTCG TTGCGCGC CTTGTTTATC chrV:6838761-6838841 54 1.63e-04 ACGATAAACA AAGCGCGA AGGGTTATTT chrI:4302346-4302426 23 1.63e-04 AATTTAAAAT TAGCGCGT GAAAATGGCG chrI:1895081-1895161 61 1.63e-04 CGGAGTGTCG TTGCGCGC CGTAAATCCA chrI:7643295-7643375 17 1.63e-04 CGGAGTGTCG TAGCGCGT GTTGTTTAAC chrI:7940761-7940841 18 1.97e-04 CATTCAAAAC TGGCGCGT CTTTGCGCTG chrIV:2670814-2670894 52 1.97e-04 GCGTGTTGTT TAGCGCGA GCTTTTTTCC chrII:7807093-7807173 67 2.15e-04 TTCTTTCGCG TGGCGCGA AATGAT chrIV:1328905-1328985 63 2.15e-04 ATTCCGTGGA GTGCGCGA GATGACGAGA chrIV:1309992-1310072 37 2.15e-04 TTTTAAAAAT TGGCGCGA ACGCGCAGGT chrI:3741267-3741347 52 2.15e-04 CACACATTTT TGGCGCGA GTTTTGAAAA chrIV:6369635-6369715 73 2.15e-04 AAACTCATTT TGGCGCGA chrV:5596531-5596611 37 2.24e-04 AACTTCGATG GAGCGCGG TTGCATGCCG chrI:4829882-4829962 67 2.24e-04 TTTCTCAAAG GAGCGCGG TGACAT chrI:3438939-3439019 21 2.47e-04 AAGTCCGTGA ATGCGCGT GCGGTGCAAC chrIII:4935055-4935135 26 2.47e-04 GAAATTCCGT ATGCGCGT GTTGTTTAGC chrV:1207126-1207206 34 2.47e-04 TTGTACGCAG ATGCGCGT CGCCTCGAGG chrI:342968-343048 59 2.47e-04 TTGTACGCAG ATGCGCGT CTCCTAAAAA chrV:6593848-6593928 72 2.47e-04 TTGAATCACC ACGCGCGG G chrII:6974176-6974256 35 2.47e-04 TTGACGAGCA ATGCGCGT CAAATATGCT chrIII:8628528-8628608 33 2.47e-04 GAGTGTGCAA ATGCGCGT AATGGTGTAC chrI:5871970-5872050 13 2.47e-04 GCATGTGGCA ATGCGCGT AAGCTTCGCC chrIII:13426196-13426276 31 2.85e-04 CAATATTACA TTGCGCGT GAAGTATGGT chrII:386102-386182 50 2.85e-04 AAGTCCGCAA TTGCGCGT CAGGTGTTGC chrIII:10114816-10114896 5 2.85e-04 TATT TTGCGCGT CAACTTCGCT chrV:965053-965133 32 2.85e-04 AACAAACCAA ACGCGCCC ATTGGACAAA chrIII:6889527-6889607 38 2.85e-04 ACTTGTTTGT TTGCGCGT CAGGTGTGGT chrII:8276249-8276329 21 2.85e-04 TATTTAAATC ACGCGCCC TTTTTTTCGC chrI:3600862-3600942 25 2.85e-04 TGGGAGGAAA ACGCGCCC CATCGCACTT chrIV:8869801-8869881 12 2.85e-04 GATAAACAGC ACGCGCCC GCGTTAAAGC chrII:11440323-11440403 67 3.10e-04 TGTCGTTTCT TTGCGCGA GTTCGA chrX:16163569-16163649 48 3.10e-04 GTTGAGCAGG AAGCGCGG AAACGGTATT chrIII:4986959-4987039 51 3.10e-04 CGAGAGAAAA AAGCGCGG AAGTTCAAAA chrII:10714388-10714468 61 3.10e-04 TGTGTGCACA AAGCGCGG GGATTTGAAT chrIII:2331368-2331448 63 3.10e-04 AGTTATGCAA TCGCGCCC CATCGCACCC chrIII:9947177-9947257 49 3.34e-04 GTTTGCGGCC TAGCGCGG AAGGTGAAAA chrV:8302691-8302771 26 3.34e-04 ACGCTAAACA AGGCGCGG TGTGGAATAA chrV:9930769-9930849 44 3.71e-04 TGCGGTGTCT GTGCGCGG CGGTTGCAGT chrII:8566229-8566309 26 3.98e-04 AATGTGGCAA GTGCGCCC CCTCGCACTA chrIII:10642949-10643029 72 4.35e-04 TGTACGCAGA GAGCGCCA C chrII:6536101-6536181 38 4.35e-04 TTTCTCAGTG GAGCGCAC TTGCATTCAT chrII:13834974-13835054 62 4.35e-04 CGTTTCAATG GAGCGCAC TTGCAATAGT chrIV:9386180-9386260 48 4.35e-04 AAGTGCAACG GAGCGCAC TTGCACGAAT chrI:443584-443664 44 4.35e-04 atgttcgatg gagcgcac ttgaattatt chrI:10185734-10185814 56 4.35e-04 ATATGCAGTG GAGCGCAC TTAATGCGCC chrIV:7165867-7165947 47 4.35e-04 GCTAAACAAC ACGCGCCT TTTGGCAACA chrV:14456774-14456854 41 4.35e-04 TCGTGCGATA GAGCGCAC CCGCAATAAA chrIV:1177842-1177922 62 4.35e-04 GATATCCCGC CAGCGCGT GTTGTTTATC chrIV:4357441-4357521 50 4.35e-04 atgtgcgatg gagcgcac ttgccaaatt chrI:8852371-8852451 1 4.92e-04 . CAGCGCGA AACTTAAAAA chrI:6970259-6970339 70 4.92e-04 ATTTTCAAAA CGGCGCGT ATT chrII:9169599-9169679 65 4.92e-04 TCGCAACGCA CGGCGCGT CTTCAAAT chrI:11038869-11038949 64 4.92e-04 ACGGTAAACA ACGCGCAC TAGCGGGAT chrI:10565988-10566068 45 4.92e-04 AGACACCGCG ACGCGCAC GCCGCGAATT chrIII:2805244-2805324 50 4.92e-04 TTTCTCAATG GGGCGCAC TTGCATTTCT chrII:12678593-12678673 51 4.92e-04 GCTAAACAAC ACGCGCCA CCGAAATATC chrV:6043443-6043523 19 4.92e-04 GAATTTGAAC ACGCGCCA ATTTGAGGTC chrIII:9089595-9089675 22 4.92e-04 TGACTAAACT GGGCGCAC GCGGGATATC chrII:11599907-11599987 48 4.92e-04 TGAGAACACA ATGCGCGG ACTTTCAAAA chrIII:902029-902109 49 5.50e-04 TGAAATGCAA ACGCGCTC CATAGATAAT chrV:9645674-9645754 29 5.50e-04 CCTATTGAAA CGGCGCGA AATTTTAAAC chrIV:874836-874916 47 5.50e-04 TTTGTCAATG GGGCGCTC TTGCATTTCC chrI:9226824-9226904 36 5.50e-04 TTTTGAACGC TCGCGCCA CAATGTCATA chrIII:1533246-1533326 25 5.50e-04 GCCAATGCAA ACGCGCTC CATTGAGAAA chrII:2204241-2204321 49 5.50e-04 CACTTCTTTT CGGCGCGA GGTTTGAATT chrIV:2916174-2916254 58 5.50e-04 CGAAAAGCAA ACGCGCTC TGTTGAACTC chrII:6321168-6321248 34 5.50e-04 GAGTAAGCAA ACGCGCTC TGTCGAGACT chrI:12426868-12426948 25 5.50e-04 GGTTTTGCAA ACGCGCTC CGTTAAACAC chrI:13161940-13162020 34 5.50e-04 AACAACTATT TTGCGCGG TTTTTCAAAA chrIII:3921802-3921882 41 5.50e-04 CCGCTATGTT TTGCGCGG AAGTTTAAAT chrIV:992122-992202 65 5.50e-04 TCCGGTGCAA ACGCGCTC CACCGcac chrII:14413204-14413284 23 6.11e-04 CGAATTACAA Tcgcgctc caacggttcg chrIII:13341038-13341118 55 6.11e-04 CGCCGCGCCA AGGCGCCT AGAAAAAACG chrI:13840050-13840130 52 6.11e-04 TTTGCGTACA AAGCGCCA CACCTGACGC chrII:13083899-13083979 17 6.11e-04 AATTTGAAAC AAGCGCCA AAAAGTGGCG chrV:14991005-14991085 32 6.11e-04 CACTCCACTA TTGCGCCC GCGTGTTGTT chrI:719955-720035 24 6.11e-04 CCCCGAGCAA TCGCGCTC CACCGGACTA chrI:6038176-6038256 20 6.11e-04 AATTCAAATT TCGCGCTC TTTCGAAGAC chrII:9108622-9108702 52 6.11e-04 ACAAATAAAA AAGCGCCA TGTTCAAACA chrIV:6415305-6415385 22 6.90e-04 ACATTTGAAT AGGCGCCA ATTGAGTGAC chrII:9706370-9706450 40 6.90e-04 CAGACGTTAA TGGCGCCT CGTTCAAATT chrIII:7068823-7068903 38 7.75e-04 CACAGACAAT TGGCGCCA GATTCAAACG chrIII:6615207-6615287 50 7.75e-04 TTTGTCAACG GAGCGCAT TTGCATTTCC chrV:5939673-5939753 49 7.75e-04 AAATCCCCTA CTGCGCGT TGTTTATTCT chrIV:10242866-10242946 25 7.75e-04 GATTCCACCT TGGCGCCA AAAAGTTTCA chrIII:6869442-6869522 36 7.75e-04 ATTAGCGGTG GAGCGCAT CTGCTCTGCC chrV:8031323-8031403 38 8.54e-04 TTTCGCGACA GGGCGCAT TTGCTTCGTC chrV:4693150-4693230 34 8.54e-04 AATCTCAAAT CTGCGCGA GATTCAAATT chrII:4828222-4828302 26 8.54e-04 AAATTTGAAC ACCCGCGC ATTTTTGTGT chrV:15395095-15395175 6 8.54e-04 TGCAA GTGCGCTC TGCCGAACAA chrV:12184466-12184546 27 8.54e-04 GATAAACTAC ACGCGCAT CGTTATATCG chrIII:8614646-8614726 36 8.54e-04 TTTAATGCAA GTGCGCTC TATCGAAATT chrIII:3070174-3070254 20 9.47e-04 CGATTCCAAT TCCCGCGC ATTAGAATTA chrII:10783353-10783433 26 1.07e-03 AATCAGCTGT TCGCGCCG GTTTCGGTGC chrII:11022173-11022253 18 1.20e-03 TATTTGAATC TCGCGCTA AATTGAGAAA chrIII:9776118-9776198 39 1.20e-03 GAAGGTGCTA ATGCGCTC TAGCGTACAC chrI:11497930-11498010 50 1.34e-03 TGGAGATTGC TGGCGCAT TTTGCGTGCT chrV:14645949-14646029 31 1.34e-03 TTAAAAAACT GAGCGGGA AAAGCAAATT chrIII:10907848-10907928 61 1.34e-03 GAGAATCTGC AGGCGCAA GCCGAATCGG chrV:1893042-1893122 40 1.46e-03 AATTCGAAAC TGGCGCCG CCGAGGATGA chrIII:6968437-6968517 62 1.46e-03 AAAAGAAAAC ACGCGGGA GACTCGATTA chrI:13367747-13367827 45 1.46e-03 ATTGGGGGTT GGGCGGGA ATTTGAACTT chrI:3910675-3910755 28 1.46e-03 CTCAAACACA ACGCGGGA ATTCAAAACA chrI:13859238-13859318 10 1.55e-03 ATTGGCGGA ACCCGCGA AGCCGTCCGC chrX:1845596-1845676 34 1.55e-03 cgggagaaga gagcgcag agagatgaga chrV:7955335-7955415 48 1.55e-03 CCACGACACA AAGCGGGT AAATTGTCGT chrI:3605777-3605857 8 1.55e-03 TATTGGT TCGCGGGA GGTGAGGTGT chrI:6626894-6626974 55 1.66e-03 CCTTGCATTT TAGCGGGT ATTCAAATCA chrIII:5499098-5499178 27 1.81e-03 AAATTTGAAT TTccgcgc aaacgatgct chrI:9962069-9962149 68 1.81e-03 ACTTGCGTAC AGGCGGGA GAGCG chrI:5189962-5190042 64 1.81e-03 TTGCGTATTT CGGCGCCT CACTCAAAA chrIII:9912633-9912713 30 1.94e-03 AAATTCAAAC TGCCGCGT TTCTTTTTGC chrV:16499180-16499260 47 1.94e-03 AACAGGCCCT GTGCGGGA AAAGAGAAAT chrIV:4031221-4031301 63 1.94e-03 AGTCATGGGT TGGCGGGA ATTTGAATTT chrIV:7632685-7632765 10 1.94e-03 TCTGAATTT TGCCGCGT ATTTGTTTCC chrV:15578520-15578600 11 1.94e-03 CACTCCAATG TTGCGCCG GAGCCTTGTT chrI:5937097-5937177 52 1.94e-03 CATTGCATTT TGCCGCGT TAATTTTTTA chrII:6245448-6245528 26 2.27e-03 AACTTAAACA TTCCGCGT AAATTTGTGT chrV:10661590-10661670 14 2.62e-03 ACATTTGAAT TGCCGCCC TACAGAAAAT chrII:12185030-12185110 40 2.73e-03 TAAAGAATTT CAGCGGGA AAAATTAATT chrI:534303-534383 42 2.87e-03 TTGCGTACCT CGGCGGGA ATTTAAAGAG chrIII:10908673-10908753 4 3.01e-03 GAG ACCCGCTC CGATAGCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNGCGCGH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:14560353-14560433 3.6e-06 26_[+1]_46 chrIII:8809707-8809787 8.6e-06 31_[+1]_41 chrI:3466840-3466920 8.6e-06 54_[+1]_18 chrIII:12739088-12739168 8.6e-06 56_[+1]_16 chrIII:10248580-10248660 8.6e-06 48_[+1]_24 chrV:11733639-11733719 8.6e-06 46_[+1]_26 chrII:2504577-2504657 8.6e-06 52_[+1]_20 chrIII:491250-491330 8.6e-06 56_[+1]_16 chrIII:11565756-11565836 8.6e-06 52_[+1]_20 chrI:5138058-5138138 8.6e-06 48_[+1]_24 chrIV:773084-773164 8.6e-06 49_[+1]_23 chrI:15035907-15035987 1.7e-05 54_[+1]_18 chrV:156513-156593 1.7e-05 56_[+1]_16 chrV:15059729-15059809 2.2e-05 8_[+1]_64 chrIV:17461480-17461560 2.2e-05 23_[+1]_49 chrIV:5188190-5188270 2.2e-05 26_[+1]_46 chrIII:4878422-4878502 2.2e-05 22_[+1]_50 chrV:18086932-18087012 2.2e-05 19_[+1]_53 chrIV:3694807-3694887 3.4e-05 25_[+1]_47 chrIV:15382680-15382760 3.4e-05 41_[+1]_31 chrIII:1207997-1208077 3.4e-05 26_[+1]_46 chrV:4339648-4339728 3.4e-05 23_[+1]_49 chrIII:12278932-12279012 3.4e-05 29_[+1]_43 chrIV:8511213-8511293 5.1e-05 66_[+1]_6 chrIII:6710171-6710251 5.1e-05 54_[+1]_18 chrI:12183248-12183328 5.1e-05 11_[+1]_61 chrIV:12334885-12334965 5.1e-05 41_[+1]_31 chrV:19405516-19405596 6.8e-05 19_[+1]_53 chrIV:2902110-2902190 6.8e-05 54_[+1]_18 chrI:3865995-3866075 6.8e-05 61_[+1]_11 chrV:8221288-8221368 6.8e-05 29_[+1]_43 chrIV:13206041-13206121 6.8e-05 49_[+1]_23 chrII:8940518-8940598 6.8e-05 34_[+1]_38 chrI:4788569-4788649 6.8e-05 62_[+1]_10 chrIII:5587087-5587167 6.8e-05 42_[+1]_30 chrIII:12377426-12377506 6.8e-05 24_[+1]_48 chrIV:9403910-9403990 6.8e-05 53_[+1]_19 chrII:2638212-2638292 6.8e-05 62_[+1]_10 chrV:5204331-5204411 8.7e-05 28_[+1]_44 chrIII:12152302-12152382 8.7e-05 50_[+1]_22 chrIII:9614368-9614448 8.7e-05 46_[+1]_26 chrIV:12209166-12209246 0.00011 19_[+1]_53 chrIII:9228347-9228427 0.00011 24_[+1]_48 chrIV:11142604-11142684 0.00011 59_[+1]_13 chrIII:7074132-7074212 0.00011 49_[+1]_23 chrII:11132694-11132774 0.00011 30_[+1]_42 chrV:14734516-14734596 0.00011 10_[+1]_62 chrIII:5405777-5405857 0.00011 18_[+1]_54 chrIII:5190355-5190435 0.00013 9_[+1]_63 chrIV:11125756-11125836 0.00013 25_[+1]_47 chrV:13437646-13437726 0.00016 34_[+1]_38 chrIV:9525108-9525188 0.00016 19_[+1]_53 chrV:6838761-6838841 0.00016 53_[+1]_19 chrI:4302346-4302426 0.00016 22_[+1]_50 chrI:1895081-1895161 0.00016 60_[+1]_12 chrI:7643295-7643375 0.00016 16_[+1]_56 chrI:7940761-7940841 0.0002 17_[+1]_55 chrIV:2670814-2670894 0.0002 51_[+1]_21 chrII:7807093-7807173 0.00021 66_[+1]_6 chrIV:1328905-1328985 0.00021 62_[+1]_10 chrIV:1309992-1310072 0.00021 36_[+1]_36 chrI:3741267-3741347 0.00021 51_[+1]_21 chrIV:6369635-6369715 0.00021 72_[+1] chrV:5596531-5596611 0.00022 36_[+1]_36 chrI:4829882-4829962 0.00022 66_[+1]_6 chrI:3438939-3439019 0.00025 20_[+1]_52 chrIII:4935055-4935135 0.00025 25_[+1]_47 chrV:1207126-1207206 0.00025 33_[+1]_39 chrI:342968-343048 0.00025 58_[+1]_14 chrV:6593848-6593928 0.00025 71_[+1]_1 chrII:6974176-6974256 0.00025 34_[+1]_38 chrIII:8628528-8628608 0.00025 32_[+1]_40 chrI:5871970-5872050 0.00025 12_[+1]_60 chrIII:13426196-13426276 0.00028 30_[+1]_42 chrII:386102-386182 0.00028 49_[+1]_23 chrIII:10114816-10114896 0.00028 4_[+1]_68 chrV:965053-965133 0.00028 31_[+1]_41 chrIII:6889527-6889607 0.00028 37_[+1]_35 chrII:8276249-8276329 0.00028 20_[+1]_52 chrI:3600862-3600942 0.00028 24_[+1]_48 chrIV:8869801-8869881 0.00028 11_[+1]_61 chrII:11440323-11440403 0.00031 66_[+1]_6 chrX:16163569-16163649 0.00031 47_[+1]_25 chrIII:4986959-4987039 0.00031 50_[+1]_22 chrII:10714388-10714468 0.00031 60_[+1]_12 chrIII:2331368-2331448 0.00031 62_[+1]_10 chrIII:9947177-9947257 0.00033 48_[+1]_24 chrV:8302691-8302771 0.00033 25_[+1]_47 chrV:9930769-9930849 0.00037 43_[+1]_29 chrII:8566229-8566309 0.0004 25_[+1]_47 chrIII:10642949-10643029 0.00044 71_[+1]_1 chrII:6536101-6536181 0.00044 37_[+1]_35 chrII:13834974-13835054 0.00044 61_[+1]_11 chrIV:9386180-9386260 0.00044 47_[+1]_25 chrI:443584-443664 0.00044 43_[+1]_29 chrI:10185734-10185814 0.00044 55_[+1]_17 chrIV:7165867-7165947 0.00044 46_[+1]_26 chrV:14456774-14456854 0.00044 40_[+1]_32 chrIV:1177842-1177922 0.00044 61_[+1]_11 chrIV:4357441-4357521 0.00044 49_[+1]_23 chrI:8852371-8852451 0.00049 [+1]_72 chrI:6970259-6970339 0.00049 69_[+1]_3 chrII:9169599-9169679 0.00049 64_[+1]_8 chrI:11038869-11038949 0.00049 63_[+1]_9 chrI:10565988-10566068 0.00049 44_[+1]_28 chrIII:2805244-2805324 0.00049 49_[+1]_23 chrII:12678593-12678673 0.00049 50_[+1]_22 chrV:6043443-6043523 0.00049 18_[+1]_54 chrIII:9089595-9089675 0.00049 21_[+1]_51 chrII:11599907-11599987 0.00049 47_[+1]_25 chrIII:902029-902109 0.00055 48_[+1]_24 chrV:9645674-9645754 0.00055 28_[+1]_44 chrIV:874836-874916 0.00055 46_[+1]_26 chrI:9226824-9226904 0.00055 35_[+1]_37 chrIII:1533246-1533326 0.00055 24_[+1]_48 chrII:2204241-2204321 0.00055 48_[+1]_24 chrIV:2916174-2916254 0.00055 57_[+1]_15 chrII:6321168-6321248 0.00055 33_[+1]_39 chrI:12426868-12426948 0.00055 24_[+1]_48 chrI:13161940-13162020 0.00055 33_[+1]_39 chrIII:3921802-3921882 0.00055 40_[+1]_32 chrIV:992122-992202 0.00055 64_[+1]_8 chrII:14413204-14413284 0.00061 22_[+1]_50 chrIII:13341038-13341118 0.00061 54_[+1]_18 chrI:13840050-13840130 0.00061 51_[+1]_21 chrII:13083899-13083979 0.00061 16_[+1]_56 chrV:14991005-14991085 0.00061 31_[+1]_41 chrI:719955-720035 0.00061 23_[+1]_49 chrI:6038176-6038256 0.00061 19_[+1]_53 chrII:9108622-9108702 0.00061 51_[+1]_21 chrIV:6415305-6415385 0.00069 21_[+1]_51 chrII:9706370-9706450 0.00069 39_[+1]_33 chrIII:7068823-7068903 0.00078 37_[+1]_35 chrIII:6615207-6615287 0.00078 49_[+1]_23 chrV:5939673-5939753 0.00078 48_[+1]_24 chrIV:10242866-10242946 0.00078 24_[+1]_48 chrIII:6869442-6869522 0.00078 35_[+1]_37 chrV:8031323-8031403 0.00085 37_[+1]_35 chrV:4693150-4693230 0.00085 33_[+1]_39 chrII:4828222-4828302 0.00085 25_[+1]_47 chrV:15395095-15395175 0.00085 5_[+1]_67 chrV:12184466-12184546 0.00085 26_[+1]_46 chrIII:8614646-8614726 0.00085 35_[+1]_37 chrIII:3070174-3070254 0.00095 19_[+1]_53 chrII:10783353-10783433 0.0011 25_[+1]_47 chrII:11022173-11022253 0.0012 17_[+1]_55 chrIII:9776118-9776198 0.0012 38_[+1]_34 chrI:11497930-11498010 0.0013 49_[+1]_23 chrV:14645949-14646029 0.0013 30_[+1]_42 chrIII:10907848-10907928 0.0013 60_[+1]_12 chrV:1893042-1893122 0.0015 39_[+1]_33 chrIII:6968437-6968517 0.0015 61_[+1]_11 chrI:13367747-13367827 0.0015 44_[+1]_28 chrI:3910675-3910755 0.0015 27_[+1]_45 chrI:13859238-13859318 0.0015 9_[+1]_63 chrX:1845596-1845676 0.0015 33_[+1]_39 chrV:7955335-7955415 0.0015 47_[+1]_25 chrI:3605777-3605857 0.0015 7_[+1]_65 chrI:6626894-6626974 0.0017 54_[+1]_18 chrIII:5499098-5499178 0.0018 26_[+1]_46 chrI:9962069-9962149 0.0018 67_[+1]_5 chrI:5189962-5190042 0.0018 63_[+1]_9 chrIII:9912633-9912713 0.0019 29_[+1]_43 chrV:16499180-16499260 0.0019 46_[+1]_26 chrIV:4031221-4031301 0.0019 62_[+1]_10 chrIV:7632685-7632765 0.0019 9_[+1]_63 chrV:15578520-15578600 0.0019 10_[+1]_62 chrI:5937097-5937177 0.0019 51_[+1]_21 chrII:6245448-6245528 0.0023 25_[+1]_47 chrV:10661590-10661670 0.0026 13_[+1]_59 chrII:12185030-12185110 0.0027 39_[+1]_33 chrI:534303-534383 0.0029 41_[+1]_31 chrIII:10908673-10908753 0.003 3_[+1]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNGCGCGH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DNGCGCGH width=8 seqs=173 chrI:14560353-14560433 ( 27) GCGCGCGC 1 chrIII:8809707-8809787 ( 32) GAGCGCGC 1 chrI:3466840-3466920 ( 55) GAGCGCGC 1 chrIII:12739088-12739168 ( 57) GAGCGCGC 1 chrIII:10248580-10248660 ( 49) GAGCGCGC 1 chrV:11733639-11733719 ( 47) GAGCGCGC 1 chrII:2504577-2504657 ( 53) GAGCGCGC 1 chrIII:491250-491330 ( 57) GAGCGCGC 1 chrIII:11565756-11565836 ( 53) GAGCGCGC 1 chrI:5138058-5138138 ( 49) GAGCGCGC 1 chrIV:773084-773164 ( 50) GAGCGCGC 1 chrI:15035907-15035987 ( 55) GGGCGCGC 1 chrV:156513-156593 ( 57) GGGCGCGC 1 chrV:15059729-15059809 ( 9) TCGCGCGC 1 chrIV:17461480-17461560 ( 24) TCGCGCGC 1 chrIV:5188190-5188270 ( 27) TCGCGCGC 1 chrIII:4878422-4878502 ( 23) TCGCGCGC 1 chrV:18086932-18087012 ( 20) TCGCGCGC 1 chrIV:3694807-3694887 ( 26) AAGCGCGC 1 chrIV:15382680-15382760 ( 42) AAGCGCGC 1 chrIII:1207997-1208077 ( 27) AAGCGCGC 1 chrV:4339648-4339728 ( 24) AAGCGCGC 1 chrIII:12278932-12279012 ( 30) AAGCGCGC 1 chrIV:8511213-8511293 ( 67) GCGCGCGA 1 chrIII:6710171-6710251 ( 55) GCGCGCGA 1 chrI:12183248-12183328 ( 12) TAGCGCGC 1 chrIV:12334885-12334965 ( 42) GCGCGCGA 1 chrV:19405516-19405596 ( 20) GAGCGCGT 1 chrIV:2902110-2902190 ( 55) GAGCGCGT 1 chrI:3865995-3866075 ( 62) GAGCGCGT 1 chrV:8221288-8221368 ( 30) GAGCGCGT 1 chrIV:13206041-13206121 ( 50) GAGCGCGT 1 chrII:8940518-8940598 ( 35) GAGCGCGT 1 chrI:4788569-4788649 ( 63) GAGCGCGT 1 chrIII:5587087-5587167 ( 43) GAGCGCGT 1 chrIII:12377426-12377506 ( 25) GAGCGCGT 1 chrIV:9403910-9403990 ( 54) GAGCGCGT 1 chrII:2638212-2638292 ( 63) GAGCGCGT 1 chrV:5204331-5204411 ( 29) ACGCGCGT 1 chrIII:12152302-12152382 ( 51) GGGCGCGT 1 chrIII:9614368-9614448 ( 47) GGGCGCGT 1 chrIV:12209166-12209246 ( 20) ACGCGCGA 1 chrIII:9228347-9228427 ( 25) ACGCGCGA 1 chrIV:11142604-11142684 ( 60) ACGCGCGA 1 chrIII:7074132-7074212 ( 50) ACGCGCGA 1 chrII:11132694-11132774 ( 31) GGGCGCGA 1 chrV:14734516-14734596 ( 11) TCGCGCGT 1 chrIII:5405777-5405857 ( 19) ACGCGCGA 1 chrIII:5190355-5190435 ( 10) TCGCGCGA 1 chrIV:11125756-11125836 ( 26) ATGCGCGC 1 chrV:13437646-13437726 ( 35) AAGCGCGA 1 chrIV:9525108-9525188 ( 20) TTGCGCGC 1 chrV:6838761-6838841 ( 54) AAGCGCGA 1 chrI:4302346-4302426 ( 23) TAGCGCGT 1 chrI:1895081-1895161 ( 61) TTGCGCGC 1 chrI:7643295-7643375 ( 17) TAGCGCGT 1 chrI:7940761-7940841 ( 18) TGGCGCGT 1 chrIV:2670814-2670894 ( 52) TAGCGCGA 1 chrII:7807093-7807173 ( 67) TGGCGCGA 1 chrIV:1328905-1328985 ( 63) GTGCGCGA 1 chrIV:1309992-1310072 ( 37) TGGCGCGA 1 chrI:3741267-3741347 ( 52) TGGCGCGA 1 chrIV:6369635-6369715 ( 73) TGGCGCGA 1 chrV:5596531-5596611 ( 37) GAGCGCGG 1 chrI:4829882-4829962 ( 67) GAGCGCGG 1 chrI:3438939-3439019 ( 21) ATGCGCGT 1 chrIII:4935055-4935135 ( 26) ATGCGCGT 1 chrV:1207126-1207206 ( 34) ATGCGCGT 1 chrI:342968-343048 ( 59) ATGCGCGT 1 chrV:6593848-6593928 ( 72) ACGCGCGG 1 chrII:6974176-6974256 ( 35) ATGCGCGT 1 chrIII:8628528-8628608 ( 33) ATGCGCGT 1 chrI:5871970-5872050 ( 13) ATGCGCGT 1 chrIII:13426196-13426276 ( 31) TTGCGCGT 1 chrII:386102-386182 ( 50) TTGCGCGT 1 chrIII:10114816-10114896 ( 5) TTGCGCGT 1 chrV:965053-965133 ( 32) ACGCGCCC 1 chrIII:6889527-6889607 ( 38) TTGCGCGT 1 chrII:8276249-8276329 ( 21) ACGCGCCC 1 chrI:3600862-3600942 ( 25) ACGCGCCC 1 chrIV:8869801-8869881 ( 12) ACGCGCCC 1 chrII:11440323-11440403 ( 67) TTGCGCGA 1 chrX:16163569-16163649 ( 48) AAGCGCGG 1 chrIII:4986959-4987039 ( 51) AAGCGCGG 1 chrII:10714388-10714468 ( 61) AAGCGCGG 1 chrIII:2331368-2331448 ( 63) TCGCGCCC 1 chrIII:9947177-9947257 ( 49) TAGCGCGG 1 chrV:8302691-8302771 ( 26) AGGCGCGG 1 chrV:9930769-9930849 ( 44) GTGCGCGG 1 chrII:8566229-8566309 ( 26) GTGCGCCC 1 chrIII:10642949-10643029 ( 72) GAGCGCCA 1 chrII:6536101-6536181 ( 38) GAGCGCAC 1 chrII:13834974-13835054 ( 62) GAGCGCAC 1 chrIV:9386180-9386260 ( 48) GAGCGCAC 1 chrI:443584-443664 ( 44) GAGCGCAC 1 chrI:10185734-10185814 ( 56) GAGCGCAC 1 chrIV:7165867-7165947 ( 47) ACGCGCCT 1 chrV:14456774-14456854 ( 41) GAGCGCAC 1 chrIV:1177842-1177922 ( 62) CAGCGCGT 1 chrIV:4357441-4357521 ( 50) GAGCGCAC 1 chrI:8852371-8852451 ( 1) CAGCGCGA 1 chrI:6970259-6970339 ( 70) CGGCGCGT 1 chrII:9169599-9169679 ( 65) CGGCGCGT 1 chrI:11038869-11038949 ( 64) ACGCGCAC 1 chrI:10565988-10566068 ( 45) ACGCGCAC 1 chrIII:2805244-2805324 ( 50) GGGCGCAC 1 chrII:12678593-12678673 ( 51) ACGCGCCA 1 chrV:6043443-6043523 ( 19) ACGCGCCA 1 chrIII:9089595-9089675 ( 22) GGGCGCAC 1 chrII:11599907-11599987 ( 48) ATGCGCGG 1 chrIII:902029-902109 ( 49) ACGCGCTC 1 chrV:9645674-9645754 ( 29) CGGCGCGA 1 chrIV:874836-874916 ( 47) GGGCGCTC 1 chrI:9226824-9226904 ( 36) TCGCGCCA 1 chrIII:1533246-1533326 ( 25) ACGCGCTC 1 chrII:2204241-2204321 ( 49) CGGCGCGA 1 chrIV:2916174-2916254 ( 58) ACGCGCTC 1 chrII:6321168-6321248 ( 34) ACGCGCTC 1 chrI:12426868-12426948 ( 25) ACGCGCTC 1 chrI:13161940-13162020 ( 34) TTGCGCGG 1 chrIII:3921802-3921882 ( 41) TTGCGCGG 1 chrIV:992122-992202 ( 65) ACGCGCTC 1 chrII:14413204-14413284 ( 23) TCGCGCTC 1 chrIII:13341038-13341118 ( 55) AGGCGCCT 1 chrI:13840050-13840130 ( 52) AAGCGCCA 1 chrII:13083899-13083979 ( 17) AAGCGCCA 1 chrV:14991005-14991085 ( 32) TTGCGCCC 1 chrI:719955-720035 ( 24) TCGCGCTC 1 chrI:6038176-6038256 ( 20) TCGCGCTC 1 chrII:9108622-9108702 ( 52) AAGCGCCA 1 chrIV:6415305-6415385 ( 22) AGGCGCCA 1 chrII:9706370-9706450 ( 40) TGGCGCCT 1 chrIII:7068823-7068903 ( 38) TGGCGCCA 1 chrIII:6615207-6615287 ( 50) GAGCGCAT 1 chrV:5939673-5939753 ( 49) CTGCGCGT 1 chrIV:10242866-10242946 ( 25) TGGCGCCA 1 chrIII:6869442-6869522 ( 36) GAGCGCAT 1 chrV:8031323-8031403 ( 38) GGGCGCAT 1 chrV:4693150-4693230 ( 34) CTGCGCGA 1 chrII:4828222-4828302 ( 26) ACCCGCGC 1 chrV:15395095-15395175 ( 6) GTGCGCTC 1 chrV:12184466-12184546 ( 27) ACGCGCAT 1 chrIII:8614646-8614726 ( 36) GTGCGCTC 1 chrIII:3070174-3070254 ( 20) TCCCGCGC 1 chrII:10783353-10783433 ( 26) TCGCGCCG 1 chrII:11022173-11022253 ( 18) TCGCGCTA 1 chrIII:9776118-9776198 ( 39) ATGCGCTC 1 chrI:11497930-11498010 ( 50) TGGCGCAT 1 chrV:14645949-14646029 ( 31) GAGCGGGA 1 chrIII:10907848-10907928 ( 61) AGGCGCAA 1 chrV:1893042-1893122 ( 40) TGGCGCCG 1 chrIII:6968437-6968517 ( 62) ACGCGGGA 1 chrI:13367747-13367827 ( 45) GGGCGGGA 1 chrI:3910675-3910755 ( 28) ACGCGGGA 1 chrI:13859238-13859318 ( 10) ACCCGCGA 1 chrX:1845596-1845676 ( 34) GAGCGCAG 1 chrV:7955335-7955415 ( 48) AAGCGGGT 1 chrI:3605777-3605857 ( 8) TCGCGGGA 1 chrI:6626894-6626974 ( 55) TAGCGGGT 1 chrIII:5499098-5499178 ( 27) TTCCGCGC 1 chrI:9962069-9962149 ( 68) AGGCGGGA 1 chrI:5189962-5190042 ( 64) CGGCGCCT 1 chrIII:9912633-9912713 ( 30) TGCCGCGT 1 chrV:16499180-16499260 ( 47) GTGCGGGA 1 chrIV:4031221-4031301 ( 63) TGGCGGGA 1 chrIV:7632685-7632765 ( 10) TGCCGCGT 1 chrV:15578520-15578600 ( 11) TTGCGCCG 1 chrI:5937097-5937177 ( 52) TGCCGCGT 1 chrII:6245448-6245528 ( 26) TTCCGCGT 1 chrV:10661590-10661670 ( 14) TGCCGCCC 1 chrII:12185030-12185110 ( 40) CAGCGGGA 1 chrI:534303-534383 ( 42) CGGCGGGA 1 chrIII:10908673-10908753 ( 4) ACCCGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNGCGCGH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.04671 E= 3.1e-079 17 -171 60 -1 20 42 -1 -70 -1408 -185 217 -1408 -1408 226 -1408 -1408 -1408 -1408 226 -1408 -1408 216 -159 -1408 -149 -53 167 -174 -14 81 -118 -6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNGCGCGH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 173 E= 3.1e-079 0.329480 0.063584 0.317919 0.289017 0.335260 0.277457 0.208092 0.179191 0.000000 0.057803 0.942197 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.930636 0.069364 0.000000 0.104046 0.144509 0.664740 0.086705 0.265896 0.364162 0.092486 0.277457 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNGCGCGH MEME-1 regular expression -------------------------------------------------------------------------------- [AGT][ACG]GCGCG[CTA] -------------------------------------------------------------------------------- Time 5.08 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTYRAAH MEME-2 width = 8 sites = 161 llr = 1069 E-value = 9.0e-071 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTYRAAH MEME-2 Description -------------------------------------------------------------------------------- Simplified A 6:::5aa3 pos.-specific C :::4:::2 probability G 2:::4::: matrix T 2aa5:::5 bits 2.3 2.0 1.8 ** ** 1.6 ** ** Relative 1.4 ** ** Entropy 1.1 ** ** (9.6 bits) 0.9 ** *** 0.7 ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATTTAAAT consensus T CG A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTYRAAH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:2902110-2902190 18 2.64e-05 AAATCTGAAA ATTCGAAT TTGAACACCC chrIII:8809707-8809787 67 2.64e-05 GGTAGTTCAA ATTCGAAT GCCTGC chrV:15578520-15578600 64 2.64e-05 TTAGCGGTTA ATTCGAAT ATTAAACCT chrV:18086932-18087012 11 2.64e-05 TTTTCTTCCA ATTCGAAT TTCGCGCGCA chrIII:1207997-1208077 70 2.64e-05 TGGGCGCGGA ATTCGAAT TTG chrV:10661590-10661670 6 1.00e-04 TTTAC ATTTGAAT TGCCGCCCTA chrIV:6415305-6415385 14 1.00e-04 GAAAATCAAC ATTTGAAT AGGCGCCAAT chrII:11022173-11022253 9 1.00e-04 AAAACTAT ATTTGAAT CTCGCGCTAA chrIII:5499098-5499178 19 1.00e-04 AAAATTCTAA ATTTGAAT TTccgcgcaa chrIII:5190355-5190435 1 1.00e-04 . ATTTGAAT TTCGCGCGAA chrIII:9228347-9228427 70 1.00e-04 CTCCATCGGA ATTCAAAT TCA chrI:7559641-7559721 11 1.00e-04 TGGATATTTT ATTTGAAT TATCCGCTCA chrII:386102-386182 3 1.00e-04 AA ATTCAAAT TCCTTGCATT chrIV:4031221-4031301 71 1.00e-04 GTTGGCGGGA ATTTGAAT TT chrIII:12739088-12739168 24 1.00e-04 cctaattcct atttgaat ttccgccaat chrIII:13439572-13439652 72 1.00e-04 GAAAATTTAA ATTTGAAT A chrV:4693150-4693230 43 1.00e-04 TCTGCGCGAG ATTCAAAT TTTATGTACA chrII:10714388-10714468 71 1.00e-04 AAGCGCGGGG ATTTGAAT TT chrV:5204331-5204411 20 1.00e-04 AAAAAACTAA ATTTGAAT TACGCGCGTA chrI:443584-443664 10 1.00e-04 aaaattcca atttgaat tccctccaag chrII:6321168-6321248 65 1.00e-04 TTTAGCGGGT ATTCAAAT TCAAAACC chrI:9581593-9581673 68 1.00e-04 GATGGCGGCA ATTCAAAT AAGGA chrI:14560353-14560433 35 1.00e-04 CTGCGCGCGC ATTCAAAT TTAGTTTTTT chrI:1895081-1895161 17 1.00e-04 ATATTTCCCA ATTTGAAT ACCCGCCAAT chrIII:2331368-2331448 24 1.00e-04 TGAAAATTCA ATTCAAAT CCGTGTGATT chrI:3600862-3600942 58 1.00e-04 ATTGGCGGGG ATTCAAAt cagtaatttt chrI:10633209-10633289 1 1.00e-04 . ATTCAAAT AAAAATAGAC chrI:6038176-6038256 11 1.00e-04 TAAACCCTCA ATTCAAAT TTCGCGCTCT chrI:7643295-7643375 49 1.00e-04 ACCCGAGGTT ATTTGAAT TTGGATTTTA chrII:10350636-10350716 60 1.00e-04 TTGGAGCGAA ATTCAAAT CTTGATATTT chrII:10579025-10579105 7 1.00e-04 ACTAGA ATTCAAAT TGCCTCTCAC chrV:15395095-15395175 31 1.00e-04 CAAGCGGCAG ATTTGAAT GCGATTTCTG chrI:5138058-5138138 1 1.00e-04 . ATTCAAAT TCAAATTTGC chrIII:12377426-12377506 57 1.00e-04 TTTCGCGGCA ATTCAAAT TAGAATTTTT chrIV:1177842-1177922 32 1.00e-04 ACTCCCGCGC ATTTGAAT TAACGACACT chrI:6626894-6626974 63 1.00e-04 TTTAGCGGGT ATTCAAAT CATATTTTCC chrI:14163335-14163415 15 1.00e-04 ATTTCCGCTT ATTCAAAT TCAAATCTCG chrI:12937875-12937955 65 1.51e-04 TCTTCTTATC ATTTAAAT TGAGTGCA chrI:12183248-12183328 60 1.51e-04 AAGAGAGGGA ATTTAAAT ATAGTTGTTG chrII:6974176-6974256 73 1.51e-04 AACCGCGGTT ATTTAAAT chrII:8276249-8276329 12 1.51e-04 AAAAAAAGAT ATTTAAAT CACGCGCCCT chrI:12426868-12426948 58 1.51e-04 TTGGCGGGGT ATTTAAAT ATTGATCCTT chrV:3743356-3743436 25 1.51e-04 AAAAAAATCG ATTTAAAT CTCCGCCAAA chrIII:3921802-3921882 70 1.51e-04 ACAGTTTCCA ATTTAAAT CTG chrIII:9912633-9912713 22 2.23e-04 AAAATATTAA ATTCAAAC TGCCGCGTTT chrIV:8511213-8511293 52 2.23e-04 CACTAATGCA ATTTGAAC GAGAAATGCG chrIII:9776118-9776198 12 2.23e-04 CGTGGCGGCA ATTTGAAC TTTTATCGAG chrIII:7068823-7068903 47 2.23e-04 TTGGCGCCAG ATTCAAAC GATAATATCT chrII:14413204-14413284 66 2.23e-04 aaacttgaaa attcaaac attttaa chrV:8212-8292 5 2.23e-04 TGAA ATTCAAAC ACCAGACACA chrIII:6615207-6615287 18 2.23e-04 TCGCTTATAA ATTTGAAC GTCCCGCGTT chrII:8940518-8940598 64 2.23e-04 AAAGGCGGAA ATTCAAAC TAATATTTT chrII:4828222-4828302 18 2.23e-04 AAAAAATAAA ATTTGAAC ACCCGCGCAT chrI:13367747-13367827 53 2.23e-04 TTGGGCGGGA ATTTGAAC TTTTTTAAAT chrV:11733639-11733719 18 2.23e-04 AGGCAAATAA ATTTGAAC TCGAAAAGTA chrIII:12152302-12152382 8 2.23e-04 TTCTTCA ATTTGAAC TTCCCGCTAT chrIII:5587087-5587167 10 2.23e-04 AAAAGTGGA ATTTGAAC ATCCACGCTT chrII:10783353-10783433 8 2.23e-04 GTTTTGG ATTCAAAC AATCAGCTGT chrIV:4357441-4357521 16 2.23e-04 CGaaattctt atttgaac ttccgcgcaa chrV:6043443-6043523 11 2.23e-04 AAAAACTCGA ATTTGAAC ACGCGCCAAT chrIV:992122-992202 32 2.23e-04 AAAAAACTAA ATTCAAAC TTCCCTCCGC chrV:12450600-12450680 7 2.23e-04 ATTCAT ATTTGAAC ACCCGCTAAT chrI:11038869-11038949 28 2.87e-04 AAAGAAATAA ATTCGAAA AACACGCGCT chrV:1893042-1893122 31 2.87e-04 ACTGGTTTCA ATTCGAAA CTGGCGCCGC chrIV:11142604-11142684 69 2.87e-04 CACGCGCGAA ATTTAAAC AATA chrIII:6889527-6889607 15 2.87e-04 AAAGAATAAA ATTCGAAA ATCGCACTTG chrI:5937097-5937177 69 2.87e-04 TTAATTTTTT ATTTAAAC GGCT chrI:3865995-3866075 30 3.61e-04 TGGGAGCTAA ATTTGAAA GTGGCGGTTT chrV:15298731-15298811 23 3.61e-04 ATGTTTGTCT ATTCAAAA AAAAAGTTAG chrI:15035907-15035987 18 3.61e-04 TAAACTCGAA ATTTGAAA AATTGCCAAA chrI:14101155-14101235 2 3.61e-04 A ATTCAAAA AATCGCGAAA chrI:7940761-7940841 9 3.61e-04 AGAAATGC ATTCAAAA CTGGCGCGTC chrIII:2805244-2805324 17 3.61e-04 TGAAAACTAA ATTTGAAA CACCCGCGCA chrI:4302346-4302426 7 3.61e-04 CCAAAA ATTCAAAA TTTAAAATTA chrII:13083899-13083979 8 3.61e-04 AAACTAA ATTTGAAA CAAGCGCCAA chrI:5871970-5872050 69 3.61e-04 TTGGCGCAAA ATTTGAAA CACA chrII:12678593-12678673 13 3.61e-04 CAAAACCCCT ATTTGAAA AACCACCCTT chrI:5189962-5190042 19 3.61e-04 TTTTTTTCGA ATTTGAAA ATTCTGTGCA chrIII:10093254-10093334 63 3.61e-04 TTGCGAGGCA ATTCAAAA ATGATTTTGC chrV:14456774-14456854 6 3.61e-04 AATCA ATTTGAAA TACAATGATT chrI:14839832-14839912 10 3.61e-04 AAAATTCCG ATTTGAAA TACCGCCAAC chrI:3910675-3910755 36 3.61e-04 CAACGCGGGA ATTCAAAA CAGGGGTTTT chrIII:12278932-12279012 65 3.61e-04 tttggcgcgc atttgaaa aaAAAATT chrII:2638212-2638292 15 3.61e-04 ACTGATATTT ATTTGAAA TTTAAAGCTT chrV:14645949-14646029 19 4.13e-04 AAGTTTTAAA ATTTAAAA AACTGAGCGG chrI:4788569-4788649 6 4.13e-04 TTTAA ATTTAAAA CTTCAATGCT chrIV:3694807-3694887 69 4.39e-04 AAGCGTGTCT TTTCGAAT AAAA chrIII:9794152-9794232 63 5.31e-04 CAAAATTGAG TTTTGAAT TTTAGGTGTC chrIV:12209166-12209246 69 5.31e-04 TGTGGCGGTT TTTCAAAT TTCA chrV:6593848-6593928 60 5.31e-04 AAGGTTTCAA TTTTGAAT CACCACGCGC chrV:5939673-5939753 7 5.31e-04 TTTCTA TTTCAAAT TCCCTCTAAA chrIV:2275745-2275825 15 5.31e-04 GTACTACACA TTTCAAAT GGAGGGAGTT chrI:10185734-10185814 16 5.31e-04 GAAAATTATA TTTTGAAT AGCCGCCCTT chrI:719955-720035 58 5.31e-04 ACACCGCGAA TTTTGAAT TACATCCCTC chrIII:10755137-10755217 71 5.31e-04 GAAATCAGAT TTTTGAAT AA chrV:12184466-12184546 65 5.31e-04 AGTGGCGGAT TTTCAAAT AAATTTTT chrIV:10697732-10697812 70 5.31e-04 TTTCGCGGTT TTTCAAAT TTG chrIII:2123833-2123913 51 6.35e-04 CGCTCTCTCC GTTCAAAT GAACAGATTA chrIV:9525108-9525188 61 6.35e-04 TCGGCGCGTA GTTCAAAT TTAGGTAGTG chrIII:11974541-11974621 69 6.35e-04 GAAATGTCTC GTTTGAAT GGGG chrII:8566229-8566309 59 6.35e-04 ATAGGAGGGT GTTCAAAT GAGGAAAAGT chrIII:7074132-7074212 59 6.35e-04 TACGCGCGAA GTTTGAAT AGGACTTTCT chrII:2204241-2204321 58 6.35e-04 TCGGCGCGAG GTTTGAAT TGGGAAACCT chrII:9706370-9706450 49 6.35e-04 ATGGCGCCTC GTTCAAAT TTTATATTTT chrII:11132694-11132774 63 6.35e-04 AACCGGGGAA GTTCAAAT CTATTTATTT chrIII:5405777-5405857 72 6.35e-04 TTTTGCGGTA GTTTGAAT T chrV:4339648-4339728 59 6.35e-04 ttggcgggag gttcaaat cggaattcga chrII:9108622-9108702 1 6.35e-04 . GTTCAAAT AAAATGACTG chrIII:9089595-9089675 68 6.35e-04 AAACGCGGGC GTTCAAAT TAGAG chrV:156513-156593 19 6.90e-04 AAAAAATCCC GTTTAAAT TCCCTCCAAT chrII:5501450-5501530 44 6.90e-04 CTGGCGGCAA TTTCGAAC GTGCATGCCA chrIII:9614368-9614448 15 6.90e-04 CGGTAAACTG GTTTAAAT TCCAATTTCG chrIII:11580669-11580749 67 6.90e-04 GATGGCGGCA GTTTAAAT ACTGAC chrIII:5483879-5483959 49 6.90e-04 TTTGGCGGAG GTTTAAAT GAGTTTTTTA chrI:11497930-11498010 11 7.56e-04 AATCGATTAT TTTCAAAC AAAAAGAATC chrII:6536101-6536181 5 7.56e-04 TACA TTTCAAAC CACGCGCTCA chrI:9226824-9226904 26 7.56e-04 AAAATTTATG TTTTGAAC GCTCGCGCCA chrI:3466840-3466920 22 7.56e-04 TGGAAACTAA TTTCAAAC GACGCGCGCA chrIV:13206041-13206121 8 7.56e-04 CACGAAT GTTCGAAC GTTTGTTTTT chrIV:10242866-10242946 38 7.56e-04 CGCCAAAAAG TTTCAAAC GCGGGGCCTA chrIII:11565756-11565836 21 7.56e-04 AAAACCCCCA TTTCAAAC TCCCGCGCTC chrI:4829882-4829962 35 7.56e-04 TGGCGTTCTT TTTTGAAC ATAGCGCCGT chrV:15059729-15059809 70 8.57e-04 TGAAAGTGAT GTTTGAAC ATG chrIV:17461480-17461560 34 8.57e-04 TCGCGCGCTC GTTCAAAC GCGTACGCAA chrV:9645674-9645754 39 8.57e-04 CGGCGCGAAA TTTTAAAC GATTGCTCCA chrIV:874836-874916 14 8.57e-04 AAAAAACTAA TTTTAAAC TCCCGCCGTC chrI:6418834-6418914 48 8.57e-04 TTCCGAATAA TTTTAAAC TTCACGAGTC chrIV:1309992-1310072 55 8.57e-04 ACGCGCAGGT GTTCAAAC ACTGTCCGTC chrV:6838761-6838841 7 8.57e-04 ATTATT TTTTAAAC TGTCCCCAAA chrIV:7165867-7165947 65 8.57e-04 TTTGGCAACA TTTCGAAA TATAATGT chrIV:275294-275374 25 9.76e-04 ACAGCGTGTT TTTCAAAA TTCCTAAGAG chrV:20162537-20162617 51 9.76e-04 TTTTCCACAT TTTTGAAA ATTTCATCAC chrI:6970259-6970339 62 9.76e-04 AACTTTCAAT TTTCAAAA CGGCGCGTAT chrIII:9947177-9947257 67 9.76e-04 AAGGTGAAAA TTTTGAAA TTGGTT chrI:3741267-3741347 61 9.76e-04 TTGGCGCGAG TTTTGAAA ACAGCTCCTG chrIII:4878422-4878502 71 9.76e-04 TTTGCATTAC TTTCAAAA CG chrI:13161940-13162020 44 9.76e-04 TTGCGCGGTT TTTCAAAA TTGAATACCT chrII:11599907-11599987 58 9.76e-04 ATGCGCGGAC TTTCAAAA AAGAGGGGTT chrIII:6710171-6710251 64 1.08e-03 TGCGCGCGAA TTTTAAAA ATAGATGCT chrV:10031554-10031634 60 1.08e-03 AAGAGAGGGA GTTCAAAA ATTAGTTTTT chrI:5319325-5319405 47 1.08e-03 TTAGAGGGTG TTTTAAAA GCAGTTCTGT chrIII:4986959-4987039 61 1.08e-03 AAGCGCGGAA GTTCAAAA CAAAAAAAAA chrIII:1533246-1533326 59 1.08e-03 GTTGGCGGGT GTTTGAAA TGGAAATTCT chrV:965053-965133 65 1.08e-03 ATTGGGGGAA GTTTGAAA ATGAGTTT chrIV:12334885-12334965 30 1.08e-03 GCGGAGTCTT GTTTGAAA AATTGCGCGC chrIV:8869801-8869881 68 1.08e-03 AATATTTAAT TTTTAAAA AACTT chrIII:4650251-4650331 68 1.21e-03 AACAGGTAGC ATTGAAAT TGTGA chrI:5815605-5815685 34 1.21e-03 TACAGTTATA ATTGAAAT TAATGGGAAT chrIII:3070174-3070254 12 1.21e-03 GAATATTCCG ATTCCAAT TCCCGCGCAT chrIV:17440562-17440642 30 1.24e-03 CAAAAAAAAA ATTTCAAT TTTATTGCAT chrI:8852371-8852451 49 1.24e-03 AAACTCACTA ATTTCAAT TTTATCAAAA chrI:5809402-5809482 29 1.31e-03 GGAAAATTGT ATTGAAAC TAACCTGGAT chrIV:773084-773164 12 1.31e-03 AAaaactctt attgaaac ttccgcgcaa chrV:20004700-20004780 64 1.36e-03 GTCACGAGGT ATTGGAAA AAATGAGAA chrIV:297015-297095 39 1.43e-03 ACACTGGAAA ATTGAAAA TTTTCCCCTA chrIII:8614646-8614726 51 1.43e-03 CTCTATCGAA ATTGAAAA TGTTTTAATG chrIII:491250-491330 1 1.57e-03 . TTTGAAAT CCCTCCAAAA chrII:7807093-7807173 49 1.65e-03 GACCGGTTTT TTTTCAAT TTCTTTCGCG chrII:13834974-13835054 53 1.70e-03 GATAAGTGGC GTTTCAAT GGAGCGCACT chrV:8031323-8031403 71 1.84e-03 GAGCGTTAAT TTTTCAAC AG chrIV:2916174-2916254 11 1.84e-03 TGCAGGCGTA TTTTCAAC AGACTTCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTYRAAH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:2902110-2902190 2.6e-05 17_[+2]_55 chrIII:8809707-8809787 2.6e-05 66_[+2]_6 chrV:15578520-15578600 2.6e-05 63_[+2]_9 chrV:18086932-18087012 2.6e-05 10_[+2]_62 chrIII:1207997-1208077 2.6e-05 69_[+2]_3 chrV:10661590-10661670 0.0001 5_[+2]_67 chrIV:6415305-6415385 0.0001 13_[+2]_59 chrII:11022173-11022253 0.0001 8_[+2]_64 chrIII:5499098-5499178 0.0001 18_[+2]_54 chrIII:5190355-5190435 0.0001 [+2]_72 chrIII:9228347-9228427 0.0001 69_[+2]_3 chrI:7559641-7559721 0.0001 10_[+2]_62 chrII:386102-386182 0.0001 2_[+2]_70 chrIV:4031221-4031301 0.0001 70_[+2]_2 chrIII:12739088-12739168 0.0001 23_[+2]_49 chrIII:13439572-13439652 0.0001 71_[+2]_1 chrV:4693150-4693230 0.0001 42_[+2]_30 chrII:10714388-10714468 0.0001 70_[+2]_2 chrV:5204331-5204411 0.0001 19_[+2]_53 chrI:443584-443664 0.0001 9_[+2]_63 chrII:6321168-6321248 0.0001 64_[+2]_8 chrI:9581593-9581673 0.0001 67_[+2]_5 chrI:14560353-14560433 0.0001 34_[+2]_38 chrI:1895081-1895161 0.0001 16_[+2]_56 chrIII:2331368-2331448 0.0001 23_[+2]_49 chrI:3600862-3600942 0.0001 57_[+2]_15 chrI:10633209-10633289 0.0001 [+2]_72 chrI:6038176-6038256 0.0001 10_[+2]_62 chrI:7643295-7643375 0.0001 48_[+2]_24 chrII:10350636-10350716 0.0001 59_[+2]_13 chrII:10579025-10579105 0.0001 6_[+2]_66 chrV:15395095-15395175 0.0001 30_[+2]_42 chrI:5138058-5138138 0.0001 [+2]_72 chrIII:12377426-12377506 0.0001 56_[+2]_16 chrIV:1177842-1177922 0.0001 31_[+2]_41 chrI:6626894-6626974 0.0001 62_[+2]_10 chrI:14163335-14163415 0.0001 14_[+2]_58 chrI:12937875-12937955 0.00015 64_[+2]_8 chrI:12183248-12183328 0.00015 59_[+2]_13 chrII:6974176-6974256 0.00015 72_[+2] chrII:8276249-8276329 0.00015 11_[+2]_61 chrI:12426868-12426948 0.00015 57_[+2]_15 chrV:3743356-3743436 0.00015 24_[+2]_48 chrIII:3921802-3921882 0.00015 69_[+2]_3 chrIII:9912633-9912713 0.00022 21_[+2]_51 chrIV:8511213-8511293 0.00022 51_[+2]_21 chrIII:9776118-9776198 0.00022 11_[+2]_61 chrIII:7068823-7068903 0.00022 46_[+2]_26 chrII:14413204-14413284 0.00022 65_[+2]_7 chrV:8212-8292 0.00022 4_[+2]_68 chrIII:6615207-6615287 0.00022 17_[+2]_55 chrII:8940518-8940598 0.00022 63_[+2]_9 chrII:4828222-4828302 0.00022 17_[+2]_55 chrI:13367747-13367827 0.00022 52_[+2]_20 chrV:11733639-11733719 0.00022 17_[+2]_55 chrIII:12152302-12152382 0.00022 7_[+2]_65 chrIII:5587087-5587167 0.00022 9_[+2]_63 chrII:10783353-10783433 0.00022 7_[+2]_65 chrIV:4357441-4357521 0.00022 15_[+2]_57 chrV:6043443-6043523 0.00022 10_[+2]_62 chrIV:992122-992202 0.00022 31_[+2]_41 chrV:12450600-12450680 0.00022 6_[+2]_66 chrI:11038869-11038949 0.00029 27_[+2]_45 chrV:1893042-1893122 0.00029 30_[+2]_42 chrIV:11142604-11142684 0.00029 68_[+2]_4 chrIII:6889527-6889607 0.00029 14_[+2]_58 chrI:5937097-5937177 0.00029 68_[+2]_4 chrI:3865995-3866075 0.00036 29_[+2]_43 chrV:15298731-15298811 0.00036 22_[+2]_50 chrI:15035907-15035987 0.00036 17_[+2]_55 chrI:14101155-14101235 0.00036 1_[+2]_71 chrI:7940761-7940841 0.00036 8_[+2]_64 chrIII:2805244-2805324 0.00036 16_[+2]_56 chrI:4302346-4302426 0.00036 6_[+2]_66 chrII:13083899-13083979 0.00036 7_[+2]_65 chrI:5871970-5872050 0.00036 68_[+2]_4 chrII:12678593-12678673 0.00036 12_[+2]_60 chrI:5189962-5190042 0.00036 18_[+2]_54 chrIII:10093254-10093334 0.00036 62_[+2]_10 chrV:14456774-14456854 0.00036 5_[+2]_67 chrI:14839832-14839912 0.00036 9_[+2]_63 chrI:3910675-3910755 0.00036 35_[+2]_37 chrIII:12278932-12279012 0.00036 64_[+2]_8 chrII:2638212-2638292 0.00036 14_[+2]_58 chrV:14645949-14646029 0.00041 18_[+2]_54 chrI:4788569-4788649 0.00041 5_[+2]_67 chrIV:3694807-3694887 0.00044 68_[+2]_4 chrIII:9794152-9794232 0.00053 62_[+2]_10 chrIV:12209166-12209246 0.00053 68_[+2]_4 chrV:6593848-6593928 0.00053 59_[+2]_13 chrV:5939673-5939753 0.00053 6_[+2]_66 chrIV:2275745-2275825 0.00053 14_[+2]_58 chrI:10185734-10185814 0.00053 15_[+2]_57 chrI:719955-720035 0.00053 57_[+2]_15 chrIII:10755137-10755217 0.00053 70_[+2]_2 chrV:12184466-12184546 0.00053 64_[+2]_8 chrIV:10697732-10697812 0.00053 69_[+2]_3 chrIII:2123833-2123913 0.00063 50_[+2]_22 chrIV:9525108-9525188 0.00063 60_[+2]_12 chrIII:11974541-11974621 0.00063 68_[+2]_4 chrII:8566229-8566309 0.00063 58_[+2]_14 chrIII:7074132-7074212 0.00063 58_[+2]_14 chrII:2204241-2204321 0.00063 57_[+2]_15 chrII:9706370-9706450 0.00063 48_[+2]_24 chrII:11132694-11132774 0.00063 62_[+2]_10 chrIII:5405777-5405857 0.00063 71_[+2]_1 chrV:4339648-4339728 0.00063 58_[+2]_14 chrII:9108622-9108702 0.00063 [+2]_72 chrIII:9089595-9089675 0.00063 67_[+2]_5 chrV:156513-156593 0.00069 18_[+2]_54 chrII:5501450-5501530 0.00069 43_[+2]_29 chrIII:9614368-9614448 0.00069 14_[+2]_58 chrIII:11580669-11580749 0.00069 66_[+2]_6 chrIII:5483879-5483959 0.00069 48_[+2]_24 chrI:11497930-11498010 0.00076 10_[+2]_62 chrII:6536101-6536181 0.00076 4_[+2]_68 chrI:9226824-9226904 0.00076 25_[+2]_47 chrI:3466840-3466920 0.00076 21_[+2]_51 chrIV:13206041-13206121 0.00076 7_[+2]_65 chrIV:10242866-10242946 0.00076 37_[+2]_35 chrIII:11565756-11565836 0.00076 20_[+2]_52 chrI:4829882-4829962 0.00076 34_[+2]_38 chrV:15059729-15059809 0.00086 69_[+2]_3 chrIV:17461480-17461560 0.00086 33_[+2]_39 chrV:9645674-9645754 0.00086 38_[+2]_34 chrIV:874836-874916 0.00086 13_[+2]_59 chrI:6418834-6418914 0.00086 47_[+2]_25 chrIV:1309992-1310072 0.00086 54_[+2]_18 chrV:6838761-6838841 0.00086 6_[+2]_66 chrIV:7165867-7165947 0.00086 64_[+2]_8 chrIV:275294-275374 0.00098 24_[+2]_48 chrV:20162537-20162617 0.00098 50_[+2]_22 chrI:6970259-6970339 0.00098 61_[+2]_11 chrIII:9947177-9947257 0.00098 66_[+2]_6 chrI:3741267-3741347 0.00098 60_[+2]_12 chrIII:4878422-4878502 0.00098 70_[+2]_2 chrI:13161940-13162020 0.00098 43_[+2]_29 chrII:11599907-11599987 0.00098 57_[+2]_15 chrIII:6710171-6710251 0.0011 63_[+2]_9 chrV:10031554-10031634 0.0011 59_[+2]_13 chrI:5319325-5319405 0.0011 46_[+2]_26 chrIII:4986959-4987039 0.0011 60_[+2]_12 chrIII:1533246-1533326 0.0011 58_[+2]_14 chrV:965053-965133 0.0011 64_[+2]_8 chrIV:12334885-12334965 0.0011 29_[+2]_43 chrIV:8869801-8869881 0.0011 67_[+2]_5 chrIII:4650251-4650331 0.0012 67_[+2]_5 chrI:5815605-5815685 0.0012 33_[+2]_39 chrIII:3070174-3070254 0.0012 11_[+2]_61 chrIV:17440562-17440642 0.0012 29_[+2]_43 chrI:8852371-8852451 0.0012 48_[+2]_24 chrI:5809402-5809482 0.0013 28_[+2]_44 chrIV:773084-773164 0.0013 11_[+2]_61 chrV:20004700-20004780 0.0014 63_[+2]_9 chrIV:297015-297095 0.0014 38_[+2]_34 chrIII:8614646-8614726 0.0014 50_[+2]_22 chrIII:491250-491330 0.0016 [+2]_72 chrII:7807093-7807173 0.0017 48_[+2]_24 chrII:13834974-13835054 0.0017 52_[+2]_20 chrV:8031323-8031403 0.0018 70_[+2]_2 chrIV:2916174-2916254 0.0018 10_[+2]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTYRAAH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTYRAAH width=8 seqs=161 chrIV:2902110-2902190 ( 18) ATTCGAAT 1 chrIII:8809707-8809787 ( 67) ATTCGAAT 1 chrV:15578520-15578600 ( 64) ATTCGAAT 1 chrV:18086932-18087012 ( 11) ATTCGAAT 1 chrIII:1207997-1208077 ( 70) ATTCGAAT 1 chrV:10661590-10661670 ( 6) ATTTGAAT 1 chrIV:6415305-6415385 ( 14) ATTTGAAT 1 chrII:11022173-11022253 ( 9) ATTTGAAT 1 chrIII:5499098-5499178 ( 19) ATTTGAAT 1 chrIII:5190355-5190435 ( 1) ATTTGAAT 1 chrIII:9228347-9228427 ( 70) ATTCAAAT 1 chrI:7559641-7559721 ( 11) ATTTGAAT 1 chrII:386102-386182 ( 3) ATTCAAAT 1 chrIV:4031221-4031301 ( 71) ATTTGAAT 1 chrIII:12739088-12739168 ( 24) ATTTGAAT 1 chrIII:13439572-13439652 ( 72) ATTTGAAT 1 chrV:4693150-4693230 ( 43) ATTCAAAT 1 chrII:10714388-10714468 ( 71) ATTTGAAT 1 chrV:5204331-5204411 ( 20) ATTTGAAT 1 chrI:443584-443664 ( 10) ATTTGAAT 1 chrII:6321168-6321248 ( 65) ATTCAAAT 1 chrI:9581593-9581673 ( 68) ATTCAAAT 1 chrI:14560353-14560433 ( 35) ATTCAAAT 1 chrI:1895081-1895161 ( 17) ATTTGAAT 1 chrIII:2331368-2331448 ( 24) ATTCAAAT 1 chrI:3600862-3600942 ( 58) ATTCAAAT 1 chrI:10633209-10633289 ( 1) ATTCAAAT 1 chrI:6038176-6038256 ( 11) ATTCAAAT 1 chrI:7643295-7643375 ( 49) ATTTGAAT 1 chrII:10350636-10350716 ( 60) ATTCAAAT 1 chrII:10579025-10579105 ( 7) ATTCAAAT 1 chrV:15395095-15395175 ( 31) ATTTGAAT 1 chrI:5138058-5138138 ( 1) ATTCAAAT 1 chrIII:12377426-12377506 ( 57) ATTCAAAT 1 chrIV:1177842-1177922 ( 32) ATTTGAAT 1 chrI:6626894-6626974 ( 63) ATTCAAAT 1 chrI:14163335-14163415 ( 15) ATTCAAAT 1 chrI:12937875-12937955 ( 65) ATTTAAAT 1 chrI:12183248-12183328 ( 60) ATTTAAAT 1 chrII:6974176-6974256 ( 73) ATTTAAAT 1 chrII:8276249-8276329 ( 12) ATTTAAAT 1 chrI:12426868-12426948 ( 58) ATTTAAAT 1 chrV:3743356-3743436 ( 25) ATTTAAAT 1 chrIII:3921802-3921882 ( 70) ATTTAAAT 1 chrIII:9912633-9912713 ( 22) ATTCAAAC 1 chrIV:8511213-8511293 ( 52) ATTTGAAC 1 chrIII:9776118-9776198 ( 12) ATTTGAAC 1 chrIII:7068823-7068903 ( 47) ATTCAAAC 1 chrII:14413204-14413284 ( 66) ATTCAAAC 1 chrV:8212-8292 ( 5) ATTCAAAC 1 chrIII:6615207-6615287 ( 18) ATTTGAAC 1 chrII:8940518-8940598 ( 64) ATTCAAAC 1 chrII:4828222-4828302 ( 18) ATTTGAAC 1 chrI:13367747-13367827 ( 53) ATTTGAAC 1 chrV:11733639-11733719 ( 18) ATTTGAAC 1 chrIII:12152302-12152382 ( 8) ATTTGAAC 1 chrIII:5587087-5587167 ( 10) ATTTGAAC 1 chrII:10783353-10783433 ( 8) ATTCAAAC 1 chrIV:4357441-4357521 ( 16) ATTTGAAC 1 chrV:6043443-6043523 ( 11) ATTTGAAC 1 chrIV:992122-992202 ( 32) ATTCAAAC 1 chrV:12450600-12450680 ( 7) ATTTGAAC 1 chrI:11038869-11038949 ( 28) ATTCGAAA 1 chrV:1893042-1893122 ( 31) ATTCGAAA 1 chrIV:11142604-11142684 ( 69) ATTTAAAC 1 chrIII:6889527-6889607 ( 15) ATTCGAAA 1 chrI:5937097-5937177 ( 69) ATTTAAAC 1 chrI:3865995-3866075 ( 30) ATTTGAAA 1 chrV:15298731-15298811 ( 23) ATTCAAAA 1 chrI:15035907-15035987 ( 18) ATTTGAAA 1 chrI:14101155-14101235 ( 2) ATTCAAAA 1 chrI:7940761-7940841 ( 9) ATTCAAAA 1 chrIII:2805244-2805324 ( 17) ATTTGAAA 1 chrI:4302346-4302426 ( 7) ATTCAAAA 1 chrII:13083899-13083979 ( 8) ATTTGAAA 1 chrI:5871970-5872050 ( 69) ATTTGAAA 1 chrII:12678593-12678673 ( 13) ATTTGAAA 1 chrI:5189962-5190042 ( 19) ATTTGAAA 1 chrIII:10093254-10093334 ( 63) ATTCAAAA 1 chrV:14456774-14456854 ( 6) ATTTGAAA 1 chrI:14839832-14839912 ( 10) ATTTGAAA 1 chrI:3910675-3910755 ( 36) ATTCAAAA 1 chrIII:12278932-12279012 ( 65) ATTTGAAA 1 chrII:2638212-2638292 ( 15) ATTTGAAA 1 chrV:14645949-14646029 ( 19) ATTTAAAA 1 chrI:4788569-4788649 ( 6) ATTTAAAA 1 chrIV:3694807-3694887 ( 69) TTTCGAAT 1 chrIII:9794152-9794232 ( 63) TTTTGAAT 1 chrIV:12209166-12209246 ( 69) TTTCAAAT 1 chrV:6593848-6593928 ( 60) TTTTGAAT 1 chrV:5939673-5939753 ( 7) TTTCAAAT 1 chrIV:2275745-2275825 ( 15) TTTCAAAT 1 chrI:10185734-10185814 ( 16) TTTTGAAT 1 chrI:719955-720035 ( 58) TTTTGAAT 1 chrIII:10755137-10755217 ( 71) TTTTGAAT 1 chrV:12184466-12184546 ( 65) TTTCAAAT 1 chrIV:10697732-10697812 ( 70) TTTCAAAT 1 chrIII:2123833-2123913 ( 51) GTTCAAAT 1 chrIV:9525108-9525188 ( 61) GTTCAAAT 1 chrIII:11974541-11974621 ( 69) GTTTGAAT 1 chrII:8566229-8566309 ( 59) GTTCAAAT 1 chrIII:7074132-7074212 ( 59) GTTTGAAT 1 chrII:2204241-2204321 ( 58) GTTTGAAT 1 chrII:9706370-9706450 ( 49) GTTCAAAT 1 chrII:11132694-11132774 ( 63) GTTCAAAT 1 chrIII:5405777-5405857 ( 72) GTTTGAAT 1 chrV:4339648-4339728 ( 59) GTTCAAAT 1 chrII:9108622-9108702 ( 1) GTTCAAAT 1 chrIII:9089595-9089675 ( 68) GTTCAAAT 1 chrV:156513-156593 ( 19) GTTTAAAT 1 chrII:5501450-5501530 ( 44) TTTCGAAC 1 chrIII:9614368-9614448 ( 15) GTTTAAAT 1 chrIII:11580669-11580749 ( 67) GTTTAAAT 1 chrIII:5483879-5483959 ( 49) GTTTAAAT 1 chrI:11497930-11498010 ( 11) TTTCAAAC 1 chrII:6536101-6536181 ( 5) TTTCAAAC 1 chrI:9226824-9226904 ( 26) TTTTGAAC 1 chrI:3466840-3466920 ( 22) TTTCAAAC 1 chrIV:13206041-13206121 ( 8) GTTCGAAC 1 chrIV:10242866-10242946 ( 38) TTTCAAAC 1 chrIII:11565756-11565836 ( 21) TTTCAAAC 1 chrI:4829882-4829962 ( 35) TTTTGAAC 1 chrV:15059729-15059809 ( 70) GTTTGAAC 1 chrIV:17461480-17461560 ( 34) GTTCAAAC 1 chrV:9645674-9645754 ( 39) TTTTAAAC 1 chrIV:874836-874916 ( 14) TTTTAAAC 1 chrI:6418834-6418914 ( 48) TTTTAAAC 1 chrIV:1309992-1310072 ( 55) GTTCAAAC 1 chrV:6838761-6838841 ( 7) TTTTAAAC 1 chrIV:7165867-7165947 ( 65) TTTCGAAA 1 chrIV:275294-275374 ( 25) TTTCAAAA 1 chrV:20162537-20162617 ( 51) TTTTGAAA 1 chrI:6970259-6970339 ( 62) TTTCAAAA 1 chrIII:9947177-9947257 ( 67) TTTTGAAA 1 chrI:3741267-3741347 ( 61) TTTTGAAA 1 chrIII:4878422-4878502 ( 71) TTTCAAAA 1 chrI:13161940-13162020 ( 44) TTTCAAAA 1 chrII:11599907-11599987 ( 58) TTTCAAAA 1 chrIII:6710171-6710251 ( 64) TTTTAAAA 1 chrV:10031554-10031634 ( 60) GTTCAAAA 1 chrI:5319325-5319405 ( 47) TTTTAAAA 1 chrIII:4986959-4987039 ( 61) GTTCAAAA 1 chrIII:1533246-1533326 ( 59) GTTTGAAA 1 chrV:965053-965133 ( 65) GTTTGAAA 1 chrIV:12334885-12334965 ( 30) GTTTGAAA 1 chrIV:8869801-8869881 ( 68) TTTTAAAA 1 chrIII:4650251-4650331 ( 68) ATTGAAAT 1 chrI:5815605-5815685 ( 34) ATTGAAAT 1 chrIII:3070174-3070254 ( 12) ATTCCAAT 1 chrIV:17440562-17440642 ( 30) ATTTCAAT 1 chrI:8852371-8852451 ( 49) ATTTCAAT 1 chrI:5809402-5809482 ( 29) ATTGAAAC 1 chrIV:773084-773164 ( 12) ATTGAAAC 1 chrV:20004700-20004780 ( 64) ATTGGAAA 1 chrIV:297015-297095 ( 39) ATTGAAAA 1 chrIII:8614646-8614726 ( 51) ATTGAAAA 1 chrIII:491250-491330 ( 1) TTTGAAAT 1 chrII:7807093-7807173 ( 49) TTTTCAAT 1 chrII:13834974-13835054 ( 53) GTTTCAAT 1 chrV:8031323-8031403 ( 71) TTTTCAAC 1 chrIV:2916174-2916254 ( 11) TTTTCAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTYRAAH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.76703 E= 9.0e-071 103 -1397 -37 -26 -1397 -1397 -1397 179 -1397 -1397 -1397 179 -1397 104 -208 85 85 -226 103 -1397 177 -1397 -1397 -1397 177 -1397 -1397 -1397 -16 26 -1397 76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTYRAAH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 161 E= 9.0e-071 0.596273 0.000000 0.161491 0.242236 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.428571 0.049689 0.521739 0.527950 0.043478 0.428571 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.260870 0.248447 0.000000 0.490683 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTYRAAH MEME-2 regular expression -------------------------------------------------------------------------------- [AT]TT[TC][AG]AA[TAC] -------------------------------------------------------------------------------- Time 8.54 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGAGTGT MEME-3 width = 8 sites = 25 llr = 245 E-value = 1.0e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGAGTGT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::8:::: pos.-specific C a::::22: probability G :aa:a:8: matrix T :::2:8:a bits 2.3 *** * 2.0 *** * 1.8 *** * 1.6 *** * ** Relative 1.4 *** * ** Entropy 1.1 *** **** (14.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGAGTGT consensus T CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGTGT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:12209166-12209246 38 9.75e-06 TTCGTAATCT CGGAGTGT CGTTGCTTGA chrII:11440323-11440403 52 9.75e-06 CCCGTTATTT CGGAGTGT CGTTTCTTTG chrIV:9525108-9525188 10 9.75e-06 ACTGGGCAA CGGAGTGT CGTTGCGCGC chrIII:6968437-6968517 41 9.75e-06 AGCGAAAGAA CGGAGTGT CGTAAAAGAA chrV:6838761-6838841 72 9.75e-06 AGGGTTATTT CGGAGTGT T chrI:1895081-1895161 51 9.75e-06 TGCGGAATAG CGGAGTGT CGTTGCGCGC chrI:6038176-6038256 45 9.75e-06 GACGGGATAT CGGAGTGT CGTTGTTTAT chrI:7643295-7643375 7 9.75e-06 AGAGAA CGGAGTGT CGTAGCGCGT chrV:12184466-12184546 43 9.75e-06 ATCGTTATAT CGGAGTGT CGTAAGTGGC chrII:1437698-1437778 45 9.75e-06 TGCGGGATTT CGGAGTGT CGTTTGCCTG chrIII:4878422-4878502 52 1.67e-05 AAAAGTGCAG CGGAGCGT GTTTGCATTA chrII:12678593-12678673 68 1.67e-05 ACCGAAATAT CGGAGCGT CGTTG chrIV:8869801-8869881 29 1.67e-05 CGCGTTAAAG CGGAGCGT CGTAGTGGCG chrI:14839832-14839912 45 1.67e-05 TGCGTTATTT CGGAGCGT CGTTGCACAA chrII:13834974-13835054 34 3.61e-05 AAGTGGACGA CGGTGTGT TGATAAGTGG chrIII:9947177-9947257 16 3.61e-05 TCGTCGTTTT CGGTGTGT TCGACGTAGA chrI:14101155-14101235 36 3.61e-05 ACTGAAAAGG CGGAGTCT AGCCGGGGGG chrV:20704165-20704245 5 3.61e-05 ATAT CGGAGTCT CGTTAGCCTT chrIV:12334885-12334965 21 3.61e-05 GCAGTGTTTG CGGAGTCT TGTTTGAAAA chrIII:9089595-9089675 39 3.61e-05 CGCGGGATAT CGGAGTCT CGTACCCGAC chrV:1432600-1432680 72 3.61e-05 AGTTTTTGAT CGGTGTGT G chrIII:3070174-3070254 58 5.00e-05 GATATTCCGC CGGTGCGT GTTGTTTAGC chrIII:9614368-9614448 33 5.70e-05 TCCAATTTCG CGGCGTGT ACAACAGGGC chrV:7186755-7186835 53 7.36e-05 CCATTTTTCT CGGAGTGC GTTTCCGGGG chrV:9930769-9930849 36 7.36e-05 ACCAATGTTG CGGTGTCT GTGCGCGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGTGT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:12209166-12209246 9.7e-06 37_[+3]_35 chrII:11440323-11440403 9.7e-06 51_[+3]_21 chrIV:9525108-9525188 9.7e-06 9_[+3]_63 chrIII:6968437-6968517 9.7e-06 40_[+3]_32 chrV:6838761-6838841 9.7e-06 71_[+3]_1 chrI:1895081-1895161 9.7e-06 50_[+3]_22 chrI:6038176-6038256 9.7e-06 44_[+3]_28 chrI:7643295-7643375 9.7e-06 6_[+3]_66 chrV:12184466-12184546 9.7e-06 42_[+3]_30 chrII:1437698-1437778 9.7e-06 44_[+3]_28 chrIII:4878422-4878502 1.7e-05 51_[+3]_21 chrII:12678593-12678673 1.7e-05 67_[+3]_5 chrIV:8869801-8869881 1.7e-05 28_[+3]_44 chrI:14839832-14839912 1.7e-05 44_[+3]_28 chrII:13834974-13835054 3.6e-05 33_[+3]_39 chrIII:9947177-9947257 3.6e-05 15_[+3]_57 chrI:14101155-14101235 3.6e-05 35_[+3]_37 chrV:20704165-20704245 3.6e-05 4_[+3]_68 chrIV:12334885-12334965 3.6e-05 20_[+3]_52 chrIII:9089595-9089675 3.6e-05 38_[+3]_34 chrV:1432600-1432680 3.6e-05 71_[+3]_1 chrIII:3070174-3070254 5e-05 57_[+3]_15 chrIII:9614368-9614448 5.7e-05 32_[+3]_40 chrV:7186755-7186835 7.4e-05 52_[+3]_20 chrV:9930769-9930849 7.4e-05 35_[+3]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGTGT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGAGTGT width=8 seqs=25 chrIV:12209166-12209246 ( 38) CGGAGTGT 1 chrII:11440323-11440403 ( 52) CGGAGTGT 1 chrIV:9525108-9525188 ( 10) CGGAGTGT 1 chrIII:6968437-6968517 ( 41) CGGAGTGT 1 chrV:6838761-6838841 ( 72) CGGAGTGT 1 chrI:1895081-1895161 ( 51) CGGAGTGT 1 chrI:6038176-6038256 ( 45) CGGAGTGT 1 chrI:7643295-7643375 ( 7) CGGAGTGT 1 chrV:12184466-12184546 ( 43) CGGAGTGT 1 chrII:1437698-1437778 ( 45) CGGAGTGT 1 chrIII:4878422-4878502 ( 52) CGGAGCGT 1 chrII:12678593-12678673 ( 68) CGGAGCGT 1 chrIV:8869801-8869881 ( 29) CGGAGCGT 1 chrI:14839832-14839912 ( 45) CGGAGCGT 1 chrII:13834974-13835054 ( 34) CGGTGTGT 1 chrIII:9947177-9947257 ( 16) CGGTGTGT 1 chrI:14101155-14101235 ( 36) CGGAGTCT 1 chrV:20704165-20704245 ( 5) CGGAGTCT 1 chrIV:12334885-12334965 ( 21) CGGAGTCT 1 chrIII:9089595-9089675 ( 39) CGGAGTCT 1 chrV:1432600-1432680 ( 72) CGGTGTGT 1 chrIII:3070174-3070254 ( 58) CGGTGCGT 1 chrIII:9614368-9614448 ( 33) CGGCGTGT 1 chrV:7186755-7186835 ( 53) CGGAGTGC 1 chrV:9930769-9930849 ( 36) CGGTGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGTGT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0004 E= 1.0e-010 -1129 226 -1129 -1129 -1129 -1129 226 -1129 -1129 -1129 226 -1129 138 -238 -1129 -54 -1129 -1129 226 -1129 -1129 -6 -1129 146 -1129 -6 193 -1129 -1129 -238 -1129 173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGTGT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.0e-010 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.760000 0.040000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.200000 0.800000 0.000000 0.000000 0.040000 0.000000 0.960000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGTGT MEME-3 regular expression -------------------------------------------------------------------------------- CGG[AT]G[TC][GC]T -------------------------------------------------------------------------------- Time 11.77 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGGCGG MEME-4 width = 8 sites = 37 llr = 309 E-value = 1.2e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGGCGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 2::1:::: pos.-specific C 1:12:a:2 probability G 2:16a:a8 matrix T 6a82:::: bits 2.3 *** 2.0 *** 1.8 * *** 1.6 * **** Relative 1.4 * **** Entropy 1.1 * **** (12.0 bits) 0.9 ** **** 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TTTGGCGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:14413204-14413284 47 9.68e-06 ttcgtttggt tttggcgg caaacttgaa chrIV:13206041-13206121 23 9.68e-06 AACGTTTGTT TTTGGCGG CTGAGTGTGG chrI:12426868-12426948 47 9.68e-06 AAACACTTCT TTTGGCGG GGTATTTAAA chrIII:5483879-5483959 39 9.68e-06 CGCACTTTTT TTTGGCGG AGGTTTAAAT chrIII:8809707-8809787 51 1.67e-05 TGCGACAGTT GTTGGCGG TAGTTCAAAT chrX:9680405-9680485 70 1.67e-05 GTTTCACTCG GTTGGCGG TAC chrIII:1533246-1533326 49 1.67e-05 GAAATCGCTT GTTGGCGG GTGTTTGAAA chrV:14991005-14991085 5 2.63e-05 CATT TTTCGCGG ATCTTACGAC chrIII:12377426-12377506 47 2.63e-05 CTAGCAAGTT TTTCGCGG CAATTCAAAT chrIV:10697732-10697812 60 2.63e-05 AAAATTCGTT TTTCGCGG TTTTTCAAAT chrI:13859238-13859318 1 3.60e-05 . ATTGGCGG AACCCGCGAA chrV:9930769-9930849 1 3.60e-05 . ATTGGCGG TGAAACATGA chrI:3600862-3600942 48 3.60e-05 CACTTTTCCA ATTGGCGG GGATTCAAAt chrIII:4058059-4058139 50 3.60e-05 GCACTTTTTC ATTGGCGG AAACTTAAAC chrIII:9747316-9747396 62 4.30e-05 GTCCCCCCTT TTCGGCGG CAGTGGAAAT chrV:5596531-5596611 65 4.30e-05 TTTGCCTCAT TTCGGCGG CAATTCAA chrII:1437698-1437778 65 4.30e-05 TTTGCCTGCT TTCGGCGG AGTTTCAA chrI:5871970-5872050 58 5.26e-05 CGCGCCTGTT TTTGGCGC AAAATTTGAA chrIII:12278932-12279012 55 5.26e-05 tgaatttttt tttggcgc gcatttgaaa chrIII:10248580-10248660 39 7.30e-05 CGCTCTCCTG TTTTGCGG TAGAGCGCGC chrIII:5405777-5405857 62 7.30e-05 GATACTCTCC TTTTGCGG TAGTTTGAAT chrIV:15382680-15382760 66 7.30e-05 gataaaatca cttggcgg gaggttc chrV:4339648-4339728 48 7.30e-05 gctaaaatca cttggcgg gaggttcaaa chrIII:902029-902109 71 9.19e-05 GATAATTTCG TTGGGCGG CA chrV:14456774-14456854 21 1.09e-04 AAATACAATG ATTCGCGG CGTCGTGCGA chrIV:2670814-2670894 66 1.15e-04 GCGAGCTTTT TTCCGCGG GAATTTG chrIII:9228347-9228427 2 1.42e-04 T TTTCGCGC CTAGGTAATA chrIII:9947177-9947257 39 1.42e-04 GTAGAACGGT GTTTGCGG CCTAGCGCGG chrI:10565988-10566068 12 1.42e-04 AAATTCTGCC TTTCGCGC CAACACGAGA chrII:4828222-4828302 53 1.42e-04 TCTGCACTGT GTTTGCGG ACAAAACACC chrIV:8869801-8869881 49 1.42e-04 TAGTGGCGTT ATCGGCGG GAATATTTAA chrV:15578520-15578600 53 1.65e-04 ACAAGCAAAT TTTAGCGG TTAATTCGAA chrII:6321168-6321248 55 1.65e-04 CGAGACTCTT TTTAGCGG GTATTCAAAT chrII:7807093-7807173 16 2.27e-04 GTCGAAATTT CTTGGCGC CAAAAGTAAA chrV:1207126-1207206 1 2.27e-04 . TTTTGCGC GACAATTAAA chrI:342968-343048 26 2.27e-04 CAATTAAATG TTTTGCGC GTCAATTAAA chrIII:9571015-9571095 61 2.42e-04 ATCAGGCGGA GTGGGCGG AGTTCGGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:14413204-14413284 9.7e-06 46_[+4]_26 chrIV:13206041-13206121 9.7e-06 22_[+4]_50 chrI:12426868-12426948 9.7e-06 46_[+4]_26 chrIII:5483879-5483959 9.7e-06 38_[+4]_34 chrIII:8809707-8809787 1.7e-05 50_[+4]_22 chrX:9680405-9680485 1.7e-05 69_[+4]_3 chrIII:1533246-1533326 1.7e-05 48_[+4]_24 chrV:14991005-14991085 2.6e-05 4_[+4]_68 chrIII:12377426-12377506 2.6e-05 46_[+4]_26 chrIV:10697732-10697812 2.6e-05 59_[+4]_13 chrI:13859238-13859318 3.6e-05 [+4]_72 chrV:9930769-9930849 3.6e-05 [+4]_72 chrI:3600862-3600942 3.6e-05 47_[+4]_25 chrIII:4058059-4058139 3.6e-05 49_[+4]_23 chrIII:9747316-9747396 4.3e-05 61_[+4]_11 chrV:5596531-5596611 4.3e-05 64_[+4]_8 chrII:1437698-1437778 4.3e-05 64_[+4]_8 chrI:5871970-5872050 5.3e-05 57_[+4]_15 chrIII:12278932-12279012 5.3e-05 54_[+4]_18 chrIII:10248580-10248660 7.3e-05 38_[+4]_34 chrIII:5405777-5405857 7.3e-05 61_[+4]_11 chrIV:15382680-15382760 7.3e-05 65_[+4]_7 chrV:4339648-4339728 7.3e-05 47_[+4]_25 chrIII:902029-902109 9.2e-05 70_[+4]_2 chrV:14456774-14456854 0.00011 20_[+4]_52 chrIV:2670814-2670894 0.00012 65_[+4]_7 chrIII:9228347-9228427 0.00014 1_[+4]_71 chrIII:9947177-9947257 0.00014 38_[+4]_34 chrI:10565988-10566068 0.00014 11_[+4]_61 chrII:4828222-4828302 0.00014 52_[+4]_20 chrIV:8869801-8869881 0.00014 48_[+4]_24 chrV:15578520-15578600 0.00016 52_[+4]_20 chrII:6321168-6321248 0.00016 54_[+4]_18 chrII:7807093-7807173 0.00023 15_[+4]_57 chrV:1207126-1207206 0.00023 [+4]_72 chrI:342968-343048 0.00023 25_[+4]_47 chrIII:9571015-9571095 0.00024 60_[+4]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGGCGG width=8 seqs=37 chrII:14413204-14413284 ( 47) TTTGGCGG 1 chrIV:13206041-13206121 ( 23) TTTGGCGG 1 chrI:12426868-12426948 ( 47) TTTGGCGG 1 chrIII:5483879-5483959 ( 39) TTTGGCGG 1 chrIII:8809707-8809787 ( 51) GTTGGCGG 1 chrX:9680405-9680485 ( 70) GTTGGCGG 1 chrIII:1533246-1533326 ( 49) GTTGGCGG 1 chrV:14991005-14991085 ( 5) TTTCGCGG 1 chrIII:12377426-12377506 ( 47) TTTCGCGG 1 chrIV:10697732-10697812 ( 60) TTTCGCGG 1 chrI:13859238-13859318 ( 1) ATTGGCGG 1 chrV:9930769-9930849 ( 1) ATTGGCGG 1 chrI:3600862-3600942 ( 48) ATTGGCGG 1 chrIII:4058059-4058139 ( 50) ATTGGCGG 1 chrIII:9747316-9747396 ( 62) TTCGGCGG 1 chrV:5596531-5596611 ( 65) TTCGGCGG 1 chrII:1437698-1437778 ( 65) TTCGGCGG 1 chrI:5871970-5872050 ( 58) TTTGGCGC 1 chrIII:12278932-12279012 ( 55) TTTGGCGC 1 chrIII:10248580-10248660 ( 39) TTTTGCGG 1 chrIII:5405777-5405857 ( 62) TTTTGCGG 1 chrIV:15382680-15382760 ( 66) CTTGGCGG 1 chrV:4339648-4339728 ( 48) CTTGGCGG 1 chrIII:902029-902109 ( 71) TTGGGCGG 1 chrV:14456774-14456854 ( 21) ATTCGCGG 1 chrIV:2670814-2670894 ( 66) TTCCGCGG 1 chrIII:9228347-9228427 ( 2) TTTCGCGC 1 chrIII:9947177-9947257 ( 39) GTTTGCGG 1 chrI:10565988-10566068 ( 12) TTTCGCGC 1 chrII:4828222-4828302 ( 53) GTTTGCGG 1 chrIV:8869801-8869881 ( 49) ATCGGCGG 1 chrV:15578520-15578600 ( 53) TTTAGCGG 1 chrII:6321168-6321248 ( 55) TTTAGCGG 1 chrII:7807093-7807173 ( 16) CTTGGCGC 1 chrV:1207126-1207206 ( 1) TTTTGCGC 1 chrI:342968-343048 ( 26) TTTTGCGC 1 chrIII:9571015-9571095 ( 61) GTGGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.1086 E= 1.2e-004 -85 -136 -37 103 -1185 -1185 -1185 178 -1185 -62 -195 148 -243 -14 151 -84 -1185 -1185 226 -1185 -1185 226 -1185 -1185 -1185 -1185 226 -1185 -1185 -14 195 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 1.2e-004 0.162162 0.081081 0.162162 0.594595 0.000000 0.000000 0.000000 1.000000 0.000000 0.135135 0.054054 0.810811 0.054054 0.189189 0.594595 0.162162 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.189189 0.810811 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCGG MEME-4 regular expression -------------------------------------------------------------------------------- TTTGGCGG -------------------------------------------------------------------------------- Time 14.88 secs. ******************************************************************************** ******************************************************************************** MOTIF ACRCTCCR MEME-5 width = 8 sites = 26 llr = 235 E-value = 4.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACRCTCCR MEME-5 Description -------------------------------------------------------------------------------- Simplified A 7:4::::5 pos.-specific C :7:a:aa: probability G 3:6::::5 matrix T :3::a::: bits 2.3 * ** 2.0 * ** 1.8 **** 1.6 **** Relative 1.4 * **** Entropy 1.1 ******** (13.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACGCTCCG consensus GTA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACRCTCCR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:3921802-3921882 18 6.92e-06 AATTTCAACG ACGCTCCG ATCTCCCGCT chrIII:4058059-4058139 30 6.92e-06 TGTGGCAAGT ACGCTCCG TCGCACTTTT chrI:10633209-10633289 39 1.66e-05 GGATGCAAAC ACGCTCCA TGGTGACAAG chrI:4302346-4302426 42 2.16e-05 AAAATGGCGA GCGCTCCG AGACCCCAGG chrIII:4935055-4935135 9 3.12e-05 TGGCAACA ACACTCCG AAATTCCGTA chrV:8221288-8221368 14 3.12e-05 GTCAGCAACG ACACTCCG AAATAACAGA chrII:9169599-9169679 7 3.12e-05 GCAACA ACACTCCG CCTTGACACC chrV:5939673-5939753 31 3.12e-05 TAAAACAACG ACACTCCG AAATCCCCTA chrV:156513-156593 70 3.12e-05 CGCGCTAACG ACACTCCG TTT chrIV:7165867-7165947 17 3.12e-05 GTTTGCAACG ACACTCCG CTATCCCGCT chrIII:3070174-3070254 41 3.12e-05 AGAATTAACG ACACTCCG ATATTCCGCC chrIV:1177842-1177922 45 3.12e-05 TGAATTAACG ACACTCCG ATATCCCGCC chrIV:1328905-1328985 23 3.81e-05 CAATGCAAGT GCGCTCCA TCGCACCACC chrII:11022173-11022253 43 3.81e-05 AAATGCAACC GCGCTCCA CTGGACAATT chrIII:9228347-9228427 57 3.81e-05 CCAAACAAAC GCGCTCCA TCGGAATTCA chrI:13161940-13162020 13 3.81e-05 GAAAGCAACC GCGCTCCA TTGAACAACT chrII:11599907-11599987 29 3.81e-05 TAATGGTAGT GCGCTCCA TTGAGAACAC chrIII:9794152-9794232 21 5.17e-05 TTCGTCTACA ACACTCCA GTGTTTCGGT chrV:14991005-14991085 21 5.17e-05 GGATCTTACG ACACTCCA CTATTGCGCC chrIII:5499098-5499178 40 6.82e-05 cgcgcaaacg atgctccg aaataacgca chrII:10350636-10350716 5 6.82e-05 TACG ATGCTCCG TTATTTTGGC chrIV:2670814-2670894 21 6.82e-05 TATTACAACG ATGCTCCG AAATTCCGCC chrII:9706370-9706450 17 9.14e-05 GTGTGCAACC ATGCTCCA TTGGACAGAC chrV:6593848-6593928 28 1.21e-04 AAGAGCAACC GTGCTCCA CCGCACATGG chrII:2204241-2204321 26 1.21e-04 GTGCGCAAGC GTGCTCCA CCGCACACTT chrV:13437646-13437726 18 1.40e-04 CCTTACAACG ATACTCCA AAATGACGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACRCTCCR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:3921802-3921882 6.9e-06 17_[+5]_55 chrIII:4058059-4058139 6.9e-06 29_[+5]_43 chrI:10633209-10633289 1.7e-05 38_[+5]_34 chrI:4302346-4302426 2.2e-05 41_[+5]_31 chrIII:4935055-4935135 3.1e-05 8_[+5]_64 chrV:8221288-8221368 3.1e-05 13_[+5]_59 chrII:9169599-9169679 3.1e-05 6_[+5]_66 chrV:5939673-5939753 3.1e-05 30_[+5]_42 chrV:156513-156593 3.1e-05 69_[+5]_3 chrIV:7165867-7165947 3.1e-05 16_[+5]_56 chrIII:3070174-3070254 3.1e-05 40_[+5]_32 chrIV:1177842-1177922 3.1e-05 44_[+5]_28 chrIV:1328905-1328985 3.8e-05 22_[+5]_50 chrII:11022173-11022253 3.8e-05 42_[+5]_30 chrIII:9228347-9228427 3.8e-05 56_[+5]_16 chrI:13161940-13162020 3.8e-05 12_[+5]_60 chrII:11599907-11599987 3.8e-05 28_[+5]_44 chrIII:9794152-9794232 5.2e-05 20_[+5]_52 chrV:14991005-14991085 5.2e-05 20_[+5]_52 chrIII:5499098-5499178 6.8e-05 39_[+5]_33 chrII:10350636-10350716 6.8e-05 4_[+5]_68 chrIV:2670814-2670894 6.8e-05 20_[+5]_52 chrII:9706370-9706450 9.1e-05 16_[+5]_56 chrV:6593848-6593928 0.00012 27_[+5]_45 chrII:2204241-2204321 0.00012 25_[+5]_47 chrV:13437646-13437726 0.00014 17_[+5]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACRCTCCR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACRCTCCR width=8 seqs=26 chrIII:3921802-3921882 ( 18) ACGCTCCG 1 chrIII:4058059-4058139 ( 30) ACGCTCCG 1 chrI:10633209-10633289 ( 39) ACGCTCCA 1 chrI:4302346-4302426 ( 42) GCGCTCCG 1 chrIII:4935055-4935135 ( 9) ACACTCCG 1 chrV:8221288-8221368 ( 14) ACACTCCG 1 chrII:9169599-9169679 ( 7) ACACTCCG 1 chrV:5939673-5939753 ( 31) ACACTCCG 1 chrV:156513-156593 ( 70) ACACTCCG 1 chrIV:7165867-7165947 ( 17) ACACTCCG 1 chrIII:3070174-3070254 ( 41) ACACTCCG 1 chrIV:1177842-1177922 ( 45) ACACTCCG 1 chrIV:1328905-1328985 ( 23) GCGCTCCA 1 chrII:11022173-11022253 ( 43) GCGCTCCA 1 chrIII:9228347-9228427 ( 57) GCGCTCCA 1 chrI:13161940-13162020 ( 13) GCGCTCCA 1 chrII:11599907-11599987 ( 29) GCGCTCCA 1 chrIII:9794152-9794232 ( 21) ACACTCCA 1 chrV:14991005-14991085 ( 21) ACACTCCA 1 chrIII:5499098-5499178 ( 40) ATGCTCCG 1 chrII:10350636-10350716 ( 5) ATGCTCCG 1 chrIV:2670814-2670894 ( 21) ATGCTCCG 1 chrII:9706370-9706450 ( 17) ATGCTCCA 1 chrV:6593848-6593928 ( 28) GTGCTCCA 1 chrII:2204241-2204321 ( 26) GTGCTCCA 1 chrV:13437646-13437726 ( 18) ATACTCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACRCTCCR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6186 E= 4.2e-003 124 -1134 55 -1134 -1134 181 -1134 -11 53 -1134 146 -1134 -1134 226 -1134 -1134 -1134 -1134 -1134 178 -1134 226 -1134 -1134 -1134 226 -1134 -1134 66 -1134 136 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACRCTCCR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 4.2e-003 0.692308 0.000000 0.307692 0.000000 0.000000 0.730769 0.000000 0.269231 0.423077 0.000000 0.576923 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.461538 0.000000 0.538462 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACRCTCCR MEME-5 regular expression -------------------------------------------------------------------------------- [AG][CT][GA]CTCC[GA] -------------------------------------------------------------------------------- Time 17.94 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:5808298-5808378 9.93e-01 80 chrV:1433251-1433331 9.43e-01 80 chrV:1432600-1432680 8.00e-02 71_[+3(3.61e-05)]_1 chrI:5811418-5811498 9.92e-01 80 chrI:5810161-5810241 9.53e-01 80 chrIV:10697732-10697812 6.71e-03 59_[+4(2.63e-05)]_13 chrII:11599907-11599987 2.54e-04 28_[+5(3.81e-05)]_44 chrII:2638212-2638292 1.44e-03 62_[+1(6.80e-05)]_10 chrI:14163335-14163415 7.32e-03 80 chrIII:10907848-10907928 2.31e-01 80 chrIV:9403910-9403990 3.88e-02 53_[+1(6.80e-05)]_19 chrIII:12278932-12279012 2.35e-05 29_[+1(3.41e-05)]_17_[+4(5.26e-05)]_\ 18 chrV:12450600-12450680 3.75e-03 80 chrII:2032396-2032476 4.10e-01 80 chrIII:9089595-9089675 3.91e-04 38_[+3(3.61e-05)]_34 chrI:6626894-6626974 7.19e-03 80 chrI:3910675-3910755 1.33e-01 80 chrII:1437698-1437778 9.19e-04 44_[+3(9.75e-06)]_12_[+4(4.30e-05)]_\ 8 chrIII:5483879-5483959 9.41e-04 38_[+4(9.68e-06)]_34 chrIV:992122-992202 7.35e-04 66_[+5(3.81e-05)]_6 chrV:6043443-6043523 4.98e-03 80 chrIII:8614646-8614726 9.44e-03 80 chrIV:4357441-4357521 2.82e-03 80 chrIV:1177842-1177922 5.49e-05 44_[+5(3.12e-05)]_28 chrV:12184466-12184546 2.38e-04 42_[+3(9.75e-06)]_30 chrI:14839832-14839912 1.76e-03 44_[+3(1.67e-05)]_28 chrIII:10755137-10755217 3.78e-01 80 chrIV:8869801-8869881 2.98e-05 28_[+3(1.67e-05)]_44 chrIII:4058059-4058139 2.21e-04 29_[+5(6.92e-06)]_12_[+4(3.60e-05)]_\ 23 chrI:4829882-4829962 6.87e-03 80 chrIII:12377426-12377506 4.55e-05 24_[+1(6.80e-05)]_14_[+4(2.63e-05)]_\ 26 chrIII:11580669-11580749 4.14e-02 80 chrII:9108622-9108702 6.84e-02 80 chrIII:3921802-3921882 1.54e-05 17_[+5(6.92e-06)]_55 chrII:10783353-10783433 9.11e-04 80 chrV:4339648-4339728 9.98e-06 23_[+1(3.41e-05)]_16_[+4(7.30e-05)]_\ 25 chrIV:2670814-2670894 1.76e-04 20_[+5(6.82e-05)]_52 chrIV:773084-773164 5.57e-04 49_[+1(8.59e-06)]_23 chrI:5138058-5138138 1.88e-04 48_[+1(8.59e-06)]_24 chrV:5596531-5596611 5.76e-03 64_[+4(4.30e-05)]_8 chrIII:11565756-11565836 3.16e-04 52_[+1(8.59e-06)]_20 chrV:14456774-14456854 6.49e-04 80 chrIII:10093254-10093334 3.56e-02 80 chrV:15395095-15395175 8.70e-03 80 chrIII:9614368-9614448 1.31e-05 27_[+4(2.63e-05)]_11_[+1(8.70e-05)]_\ 26 chrIII:10754555-10754635 5.78e-01 80 chrII:10579025-10579105 6.34e-02 80 chrI:5189962-5190042 5.64e-04 80 chrIII:5587087-5587167 4.00e-04 42_[+1(6.80e-05)]_30 chrIII:3070174-3070254 1.18e-05 40_[+5(3.12e-05)]_9_[+3(5.00e-05)]_\ 15 chrII:10350636-10350716 1.11e-03 4_[+5(6.82e-05)]_68 chrIV:7165867-7165947 3.67e-03 16_[+5(3.12e-05)]_56 chrI:7643295-7643375 1.38e-04 6_[+3(9.75e-06)]_66 chrIII:491250-491330 1.53e-04 56_[+1(8.59e-06)]_16 chrI:5809402-5809482 5.74e-01 80 chrI:534303-534383 4.42e-02 80 chrII:12678593-12678673 8.16e-05 67_[+3(1.67e-05)]_5 chrIII:9571015-9571095 3.71e-03 80 chrI:6038176-6038256 7.69e-06 44_[+3(9.75e-06)]_28 chrI:5815605-5815685 7.70e-01 80 chrV:3743356-3743436 4.22e-02 80 chrIII:1207997-1208077 4.14e-06 26_[+1(3.41e-05)]_35_[+2(2.64e-05)]_\ 3 chrIV:11125756-11125836 8.50e-04 80 chrI:10633209-10633289 4.78e-03 38_[+5(1.66e-05)]_34 chrI:719955-720035 2.58e-03 25_[+5(3.81e-05)]_47 chrI:13161940-13162020 2.31e-04 12_[+5(3.81e-05)]_60 chrI:5871970-5872050 3.33e-04 57_[+4(5.26e-05)]_15 chrI:3600862-3600942 1.13e-04 47_[+4(3.60e-05)]_25 chrIII:2331368-2331448 1.35e-03 80 chrI:1895081-1895161 1.12e-06 50_[+3(9.75e-06)]_22 chrI:14560353-14560433 6.47e-06 26_[+1(3.57e-06)]_46 chrI:9581593-9581673 3.87e-02 80 chrI:4788569-4788649 8.64e-03 62_[+1(6.80e-05)]_10 chrI:12426868-12426948 1.41e-06 26_[+5(2.16e-05)]_12_[+4(9.68e-06)]_\ 26 chrV:9930769-9930849 1.05e-04 [+4(3.60e-05)]_27_[+3(7.36e-05)]_37 chrIV:12334885-12334965 8.52e-06 20_[+3(3.61e-05)]_13_[+1(5.11e-05)]_\ 31 chrI:10185734-10185814 2.76e-02 80 chrI:3605777-3605857 8.30e-03 5_[+4(7.99e-05)]_67 chrIII:9747316-9747396 3.00e-02 61_[+4(4.30e-05)]_11 chrII:6321168-6321248 3.51e-04 80 chrV:14991005-14991085 8.78e-05 4_[+4(2.63e-05)]_8_[+5(5.17e-05)]_\ 52 chrIV:15382680-15382760 5.77e-05 41_[+1(3.41e-05)]_16_[+4(7.30e-05)]_\ 7 chrIV:6369635-6369715 9.90e-03 70_[+4(5.26e-05)]_2 chrIII:5405777-5405857 1.53e-04 61_[+4(7.30e-05)]_11 chrV:18086932-18087012 2.45e-05 10_[+2(2.64e-05)]_1_[+1(2.21e-05)]_\ 53 chrV:14645949-14646029 5.27e-03 80 chrII:13083899-13083979 1.33e-03 80 chrI:443584-443664 5.54e-03 80 chrV:14734516-14734596 4.20e-03 80 chrII:11132694-11132774 7.38e-03 80 chrI:5937097-5937177 3.68e-02 80 chrIII:4878422-4878502 1.20e-05 22_[+1(2.21e-05)]_21_[+3(1.67e-05)]_\ 21 chrIII:12152302-12152382 6.18e-03 50_[+1(8.70e-05)]_22 chrII:2504577-2504657 6.25e-03 52_[+1(8.59e-06)]_20 chrIII:6869442-6869522 3.84e-02 80 chrIV:10242866-10242946 3.30e-03 80 chrV:8302691-8302771 3.00e-02 80 chrV:11733639-11733719 5.56e-04 46_[+1(8.59e-06)]_26 chrIV:2916174-2916254 4.14e-02 80 chrII:9706370-9706450 1.13e-03 16_[+5(9.14e-05)]_56 chrI:13367747-13367827 6.55e-03 42_[+4(9.19e-05)]_30 chrV:3468613-3468693 9.38e-01 80 chrII:2204241-2204321 1.17e-04 80 chrI:13840050-13840130 1.10e-01 80 chrIII:7074132-7074212 6.99e-03 80 chrII:5501450-5501530 2.34e-02 80 chrII:4828222-4828302 4.61e-03 80 chrIII:10248580-10248660 3.09e-04 23_[+1(2.21e-05)]_7_[+4(7.30e-05)]_\ 2_[+1(8.59e-06)]_24 chrI:5810801-5810881 8.36e-01 80 chrII:8566229-8566309 2.89e-02 80 chrII:8276249-8276329 6.70e-03 80 chrI:4302346-4302426 2.45e-05 41_[+5(2.16e-05)]_31 chrV:6838761-6838841 3.90e-04 71_[+3(9.75e-06)]_1 chrV:1434563-1434643 9.77e-01 80 chrIII:5267687-5267767 9.42e-01 80 chrV:156513-156593 3.93e-05 56_[+1(1.72e-05)]_5_[+5(3.12e-05)]_\ 3 chrIII:2805244-2805324 6.97e-02 80 chrV:5204331-5204411 5.55e-03 28_[+1(8.70e-05)]_44 chrIII:6968437-6968517 9.05e-03 40_[+3(9.75e-06)]_32 chrIV:2275745-2275825 1.96e-01 80 chrI:3741267-3741347 9.55e-04 49_[+4(5.26e-05)]_23 chrII:10714388-10714468 1.85e-02 80 chrV:15578520-15578600 3.46e-05 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chrI:10565988-10566068 6.64e-03 80 chrI:3466840-3466920 2.36e-03 30_[+1(1.72e-05)]_16_[+1(8.59e-06)]_\ 18 chrV:1893042-1893122 8.63e-02 80 chrV:22001-22081 8.38e-01 80 chrII:6245448-6245528 1.32e-02 80 chrIII:1533246-1533326 3.18e-05 26_[+5(3.81e-05)]_14_[+4(1.67e-05)]_\ 24 chrX:9680405-9680485 4.09e-02 69_[+4(1.67e-05)]_3 chrV:8267413-8267493 5.09e-01 80 chrIV:9386180-9386260 1.52e-02 45_[+3(9.05e-05)]_27 chrIV:7632685-7632765 5.87e-02 80 chrII:14413204-14413284 1.65e-06 24_[+5(3.81e-05)]_14_[+4(9.68e-06)]_\ 26 chrI:11038869-11038949 1.90e-02 80 chrIV:4031221-4031301 7.54e-04 60_[+4(1.67e-05)]_12 chrIII:10114816-10114896 1.13e-02 80 chrV:7955335-7955415 2.68e-01 80 chrIII:7068823-7068903 5.74e-03 80 chrI:14101155-14101235 8.57e-03 35_[+3(3.61e-05)]_37 chrII:386102-386182 7.60e-03 80 chrIII:4986959-4987039 4.53e-02 80 chrX:16163569-16163649 1.92e-01 80 chrI:15035907-15035987 4.41e-05 54_[+1(1.72e-05)]_18 chrV:16589-16669 9.85e-01 80 chrV:8031323-8031403 3.47e-02 80 chrIII:9947177-9947257 1.67e-04 15_[+3(3.61e-05)]_57 chrII:13834974-13835054 3.55e-03 33_[+3(3.61e-05)]_39 chrI:7559641-7559721 5.01e-02 80 chrI:5319325-5319405 7.11e-02 80 chrIV:10463301-10463381 2.90e-01 80 chrIII:8809707-8809787 1.69e-07 31_[+1(8.59e-06)]_11_[+4(1.67e-05)]_\ 8_[+2(2.64e-05)]_6 chrII:9169599-9169679 1.56e-04 6_[+5(3.12e-05)]_50_[+3(7.86e-05)]_\ 8 chrIII:9228347-9228427 9.69e-06 56_[+5(3.81e-05)]_16 chrIII:8733865-8733945 9.75e-01 80 chrI:9226824-9226904 1.78e-02 80 chrII:8577533-8577613 4.77e-01 80 chrII:6026794-6026874 5.17e-01 80 chrX:1845596-1845676 3.33e-01 80 chrIII:9776118-9776198 1.19e-02 80 chrIV:1239861-1239941 4.96e-01 80 chrV:15298731-15298811 3.86e-01 80 chrIV:9525108-9525188 2.13e-05 9_[+3(9.75e-06)]_34_[+3(7.86e-05)]_\ 21 chrIII:7758715-7758795 1.42e-01 80 chrIII:13426196-13426276 1.06e-01 80 chrI:6418834-6418914 5.63e-01 80 chrV:16499180-16499260 1.30e-01 80 chrI:6970259-6970339 5.14e-03 69_[+3(7.86e-05)]_3 chrV:20162537-20162617 3.35e-01 80 chrII:12185030-12185110 1.88e-02 80 chrIV:275294-275374 2.55e-01 80 chrII:14667890-14667970 4.86e-01 80 chrV:17714467-17714547 9.86e-01 80 chrV:10031554-10031634 4.18e-01 80 chrIII:4650251-4650331 7.71e-01 80 chrII:11440323-11440403 1.11e-04 51_[+3(9.75e-06)]_21 chrI:8852371-8852451 2.48e-01 80 chrIV:3988810-3988890 6.29e-01 80 chrI:13859238-13859318 8.29e-03 [+4(3.60e-05)]_72 chrIV:17440562-17440642 6.78e-01 80 chrV:8221288-8221368 1.75e-03 13_[+5(3.12e-05)]_8_[+1(6.80e-05)]_\ 43 chrIV:874836-874916 6.38e-02 80 chrIV:297015-297095 7.10e-01 80 chrI:342968-343048 1.16e-02 80 chrI:3865995-3866075 2.34e-04 61_[+1(6.80e-05)]_11 chrIII:5190355-5190435 1.54e-04 80 chrI:10622862-10622942 9.85e-01 80 chrII:6536101-6536181 2.80e-02 80 chrIII:6710171-6710251 2.12e-03 54_[+1(5.11e-05)]_18 chrIII:11526550-11526630 4.26e-01 80 chrIII:12534067-12534147 2.07e-01 80 chrV:13437646-13437726 5.40e-03 80 chrV:1207126-1207206 2.68e-03 80 chrIV:8511213-8511293 5.83e-04 66_[+1(5.11e-05)]_6 chrI:12937875-12937955 3.55e-01 80 chrV:9645674-9645754 9.97e-03 80 chrV:10280252-10280332 8.20e-01 80 chrIV:3694807-3694887 3.39e-04 25_[+1(3.41e-05)]_47 chrI:11497930-11498010 8.79e-02 80 chrIII:10908673-10908753 8.20e-02 80 chrIV:12209166-12209246 3.37e-05 37_[+3(9.75e-06)]_35 chrIII:5499098-5499178 2.14e-04 39_[+5(6.82e-05)]_33 chrV:7186755-7186835 1.88e-02 52_[+3(7.36e-05)]_20 chrIII:902029-902109 5.79e-04 50_[+5(3.81e-05)]_12_[+4(9.19e-05)]_\ 2 chrIV:2902110-2902190 4.84e-05 17_[+2(2.64e-05)]_29_[+1(6.80e-05)]_\ 18 chrV:20004700-20004780 7.55e-01 80 chrIII:9912633-9912713 2.14e-02 80 chrV:19405516-19405596 5.03e-02 19_[+1(6.80e-05)]_53 chrIII:11026792-11026872 2.20e-01 80 chrIII:9794152-9794232 2.15e-03 20_[+5(5.17e-05)]_52 chrI:7762583-7762663 8.71e-01 80 chrIII:4935055-4935135 2.62e-03 8_[+5(3.12e-05)]_64 chrIII:2123833-2123913 9.52e-02 80 chrIV:17461480-17461560 6.93e-04 23_[+1(2.21e-05)]_49 chrIV:3900002-3900082 5.54e-01 80 chrI:11701756-11701836 2.90e-01 80 chrII:11022173-11022253 6.66e-04 42_[+5(3.81e-05)]_30 chrV:10536207-10536287 6.74e-01 80 chrIII:10905259-10905339 9.88e-01 80 chrIII:10642949-10643029 5.72e-02 80 chrIV:1328905-1328985 1.96e-03 22_[+5(3.81e-05)]_50 chrIII:13604049-13604129 6.07e-01 80 chrIV:6415305-6415385 1.16e-02 80 chrV:15059729-15059809 5.40e-05 8_[+1(2.21e-05)]_64 chrII:7807093-7807173 1.03e-02 80 chrV:10661590-10661670 5.67e-02 80 chrI:3438939-3439019 1.39e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n05.farnam.hpc.yale.internal ********************************************************************************