******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/gei-8.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:14500764-14500844 1.0000 80 chrX:3290231-3290311 1.0000 80 chrX:3823997-3824077 1.0000 80 chrII:15025622-15025702 1.0000 80 chrV:117453-117533 1.0000 80 chrV:8651519-8651599 1.0000 80 chrIV:5375106-5375186 1.0000 80 chrIII:9326687-9326767 1.0000 80 chrIV:17471559-17471639 1.0000 80 chrI:10748343-10748423 1.0000 80 chrII:5341168-5341248 1.0000 80 chrV:11147569-11147649 1.0000 80 chrII:10016279-10016359 1.0000 80 chrI:9100133-9100213 1.0000 80 chrIII:11694719-11694799 1.0000 80 chrV:4190324-4190404 1.0000 80 chrV:11859207-11859287 1.0000 80 chrX:12662859-12662939 1.0000 80 chrX:2569253-2569333 1.0000 80 chrII:7319591-7319671 1.0000 80 chrIII:13724473-13724553 1.0000 80 chrV:11541378-11541458 1.0000 80 chrI:2253432-2253512 1.0000 80 chrIII:7738018-7738098 1.0000 80 chrV:18573439-18573519 1.0000 80 chrV:11803527-11803607 1.0000 80 chrV:9080135-9080215 1.0000 80 chrV:9075118-9075198 1.0000 80 chrIII:5551388-5551468 1.0000 80 chrIV:13390901-13390981 1.0000 80 chrX:1478077-1478157 1.0000 80 chrV:15013023-15013103 1.0000 80 chrV:10887661-10887741 1.0000 80 chrIII:7736943-7737023 1.0000 80 chrX:17640942-17641022 1.0000 80 chrV:5410806-5410886 1.0000 80 chrV:10471942-10472022 1.0000 80 chrV:10968120-10968200 1.0000 80 chrII:10393538-10393618 1.0000 80 chrII:9501106-9501186 1.0000 80 chrIII:8739313-8739393 1.0000 80 chrX:6456706-6456786 1.0000 80 chrV:11802637-11802717 1.0000 80 chrV:6226763-6226843 1.0000 80 chrII:9738784-9738864 1.0000 80 chrX:6127038-6127118 1.0000 80 chrV:14687324-14687404 1.0000 80 chrI:6498253-6498333 1.0000 80 chrIII:10711394-10711474 1.0000 80 chrV:20497765-20497845 1.0000 80 chrV:5592058-5592138 1.0000 80 chrII:11836750-11836830 1.0000 80 chrX:13355126-13355206 1.0000 80 chrIII:8400633-8400713 1.0000 80 chrI:10752127-10752207 1.0000 80 chrV:6221602-6221682 1.0000 80 chrV:13007279-13007359 1.0000 80 chrX:15706229-15706309 1.0000 80 chrX:8243219-8243299 1.0000 80 chrIV:6099994-6100074 1.0000 80 chrX:17636511-17636591 1.0000 80 chrV:1158469-1158549 1.0000 80 chrV:11888112-11888192 1.0000 80 chrIII:5542117-5542197 1.0000 80 chrIV:12109317-12109397 1.0000 80 chrX:2932030-2932110 1.0000 80 chrI:6836822-6836902 1.0000 80 chrX:17633328-17633408 1.0000 80 chrII:11151015-11151095 1.0000 80 chrIV:9868099-9868179 1.0000 80 chrV:16815091-16815171 1.0000 80 chrIV:7488622-7488702 1.0000 80 chrII:12210962-12211042 1.0000 80 chrIII:8785597-8785677 1.0000 80 chrV:19527695-19527775 1.0000 80 chrX:12937764-12937844 1.0000 80 chrIV:9320082-9320162 1.0000 80 chrI:2622898-2622978 1.0000 80 chrIV:2772462-2772542 1.0000 80 chrV:388617-388697 1.0000 80 chrV:9079089-9079169 1.0000 80 chrIV:2664930-2665010 1.0000 80 chrIII:4491240-4491320 1.0000 80 chrI:5372415-5372495 1.0000 80 chrV:18573658-18573738 1.0000 80 chrX:5653902-5653982 1.0000 80 chrIV:8042265-8042345 1.0000 80 chrI:5033321-5033401 1.0000 80 chrI:14273821-14273901 1.0000 80 chrV:20164681-20164761 1.0000 80 chrV:13650015-13650095 1.0000 80 chrX:12759767-12759847 1.0000 80 chrX:6748110-6748190 1.0000 80 chrX:16725154-16725234 1.0000 80 chrX:8476359-8476439 1.0000 80 chrX:15146564-15146644 1.0000 80 chrII:12787905-12787985 1.0000 80 chrX:4018861-4018941 1.0000 80 chrIII:3653086-3653166 1.0000 80 chrV:6247500-6247580 1.0000 80 chrII:8020688-8020768 1.0000 80 chrIII:7369498-7369578 1.0000 80 chrIV:17470225-17470305 1.0000 80 chrX:13356578-13356658 1.0000 80 chrX:6522877-6522957 1.0000 80 chrX:12169515-12169595 1.0000 80 chrIII:4471885-4471965 1.0000 80 chrI:10777402-10777482 1.0000 80 chrIV:3612010-3612090 1.0000 80 chrII:13780933-13781013 1.0000 80 chrV:15480034-15480114 1.0000 80 chrII:13957545-13957625 1.0000 80 chrI:4804766-4804846 1.0000 80 chrII:4089340-4089420 1.0000 80 chrIV:11523953-11524033 1.0000 80 chrII:8742181-8742261 1.0000 80 chrII:8822838-8822918 1.0000 80 chrX:11476817-11476897 1.0000 80 chrII:7790778-7790858 1.0000 80 chrIII:11921850-11921930 1.0000 80 chrIV:10950471-10950551 1.0000 80 chrIV:16169814-16169894 1.0000 80 chrI:9850891-9850971 1.0000 80 chrIII:11829869-11829949 1.0000 80 chrIII:7978473-7978553 1.0000 80 chrIII:8975086-8975166 1.0000 80 chrV:3713925-3714005 1.0000 80 chrIV:8530707-8530787 1.0000 80 chrIV:4413102-4413182 1.0000 80 chrIV:11503781-11503861 1.0000 80 chrII:8765327-8765407 1.0000 80 chrV:15547908-15547988 1.0000 80 chrV:13415633-13415713 1.0000 80 chrII:10447504-10447584 1.0000 80 chrIII:1937994-1938074 1.0000 80 chrI:12065806-12065886 1.0000 80 chrX:15359290-15359370 1.0000 80 chrII:9739043-9739123 1.0000 80 chrV:15661528-15661608 1.0000 80 chrIV:11955742-11955822 1.0000 80 chrIII:7495119-7495199 1.0000 80 chrIV:295855-295935 1.0000 80 chrX:14502239-14502319 1.0000 80 chrX:17420002-17420082 1.0000 80 chrIII:11811482-11811562 1.0000 80 chrV:4131663-4131743 1.0000 80 chrV:13269455-13269535 1.0000 80 chrV:6487946-6488026 1.0000 80 chrII:5353816-5353896 1.0000 80 chrII:12791204-12791284 1.0000 80 chrV:20499084-20499164 1.0000 80 chrIV:2315706-2315786 1.0000 80 chrX:8090013-8090093 1.0000 80 chrII:14909236-14909316 1.0000 80 chrX:13349425-13349505 1.0000 80 chrIV:9672647-9672727 1.0000 80 chrIII:646655-646735 1.0000 80 chrX:8155807-8155887 1.0000 80 chrX:7378730-7378810 1.0000 80 chrIII:2786951-2787031 1.0000 80 chrI:7656621-7656701 1.0000 80 chrX:13470774-13470854 1.0000 80 chrX:4148878-4148958 1.0000 80 chrI:11999438-11999518 1.0000 80 chrI:4358402-4358482 1.0000 80 chrI:12654751-12654831 1.0000 80 chrIV:7053735-7053815 1.0000 80 chrX:15700564-15700644 1.0000 80 chrV:5271710-5271790 1.0000 80 chrII:14838716-14838796 1.0000 80 chrX:7986949-7987029 1.0000 80 chrV:7744180-7744260 1.0000 80 chrV:6559726-6559806 1.0000 80 chrIII:12325396-12325476 1.0000 80 chrIII:3739918-3739998 1.0000 80 chrIV:6845521-6845601 1.0000 80 chrV:5836360-5836440 1.0000 80 chrI:9624703-9624783 1.0000 80 chrX:8211246-8211326 1.0000 80 chrII:11846064-11846144 1.0000 80 chrX:4532200-4532280 1.0000 80 chrX:13730670-13730750 1.0000 80 chrV:10937603-10937683 1.0000 80 chrX:14506102-14506182 1.0000 80 chrIV:2665772-2665852 1.0000 80 chrI:8301984-8302064 1.0000 80 chrIII:9664684-9664764 1.0000 80 chrIV:6879052-6879132 1.0000 80 chrV:5768425-5768505 1.0000 80 chrV:13081370-13081450 1.0000 80 chrX:17063938-17064018 1.0000 80 chrX:14783683-14783763 1.0000 80 chrIII:12327760-12327840 1.0000 80 chrII:11376667-11376747 1.0000 80 chrII:14256135-14256215 1.0000 80 chrI:5412616-5412696 1.0000 80 chrIV:9989580-9989660 1.0000 80 chrIV:16400921-16401001 1.0000 80 chrI:6294031-6294111 1.0000 80 chrIV:358746-358826 1.0000 80 chrIV:5591303-5591383 1.0000 80 chrV:13202430-13202510 1.0000 80 chrIII:5230620-5230700 1.0000 80 chrIV:10500232-10500312 1.0000 80 chrV:1177465-1177545 1.0000 80 chrX:10332453-10332533 1.0000 80 chrI:9100950-9101030 1.0000 80 chrV:11572972-11573052 1.0000 80 chrII:7337656-7337736 1.0000 80 chrX:13358706-13358786 1.0000 80 chrIV:7047916-7047996 1.0000 80 chrV:12320662-12320742 1.0000 80 chrX:2891152-2891232 1.0000 80 chrIV:13393263-13393343 1.0000 80 chrV:8496096-8496176 1.0000 80 chrI:2689168-2689248 1.0000 80 chrX:14438022-14438102 1.0000 80 chrIV:9801668-9801748 1.0000 80 chrX:7680956-7681036 1.0000 80 chrV:6994052-6994132 1.0000 80 chrIII:7166076-7166156 1.0000 80 chrIV:5764511-5764591 1.0000 80 chrX:643866-643946 1.0000 80 chrI:9167018-9167098 1.0000 80 chrI:1223397-1223477 1.0000 80 chrX:13714903-13714983 1.0000 80 chrII:8441660-8441740 1.0000 80 chrIV:291966-292046 1.0000 80 chrX:12500974-12501054 1.0000 80 chrIII:6895296-6895376 1.0000 80 chrIII:11692588-11692668 1.0000 80 chrX:8676137-8676217 1.0000 80 chrII:10559984-10560064 1.0000 80 chrIII:698996-699076 1.0000 80 chrI:3682112-3682192 1.0000 80 chrII:7287348-7287428 1.0000 80 chrX:6749355-6749435 1.0000 80 chrI:12552789-12552869 1.0000 80 chrV:13892656-13892736 1.0000 80 chrII:2860302-2860382 1.0000 80 chrIII:10746473-10746553 1.0000 80 chrX:1012594-1012674 1.0000 80 chrII:4094489-4094569 1.0000 80 chrI:13371310-13371390 1.0000 80 chrII:8818497-8818577 1.0000 80 chrII:8740509-8740589 1.0000 80 chrIII:5196530-5196610 1.0000 80 chrV:10858513-10858593 1.0000 80 chrII:15261180-15261260 1.0000 80 chrII:13462284-13462364 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_gei-8/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/gei-8.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.283 C 0.217 G 0.216 T 0.284 Background letter frequencies (from file dataset with add-one prior applied): A 0.283 C 0.217 G 0.216 T 0.284 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GSAGCAGC MEME-1 width = 8 sites = 14 llr = 135 E-value = 5.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSAGCAGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::9::6:: pos.-specific C :51:a1:a probability G a4:a:3a: matrix T :1:::::: bits 2.2 * ** ** 2.0 * ** ** 1.8 * ** ** 1.5 * ** ** Relative 1.3 * *** ** Entropy 1.1 * *** ** (14.0 bits) 0.9 ***** ** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCAGC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAGCAGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:10858513-10858593 45 8.25e-06 Cgctgcagca gcagcagc agTCGCTCTT chrIII:1937994-1938074 49 8.25e-06 aacagcagca gcagcagc aacaggccgt chrX:16725154-16725234 22 8.25e-06 GTACATACAA GCAGCAGC GGTGGAAAAA chrV:117453-117533 69 8.25e-06 CTCCGGCGAT GCAGCAGC GTCC chrIII:5230620-5230700 6 1.65e-05 GTCGC GGAGCAGC ATGAGGAACA chrIII:9664684-9664764 42 1.65e-05 TAGGAGAAGA GGAGCAGC GCCAAGTGCT chrIII:8785597-8785677 46 1.65e-05 CAGAGAGTGG GGAGCAGC AAAAAAACTG chrI:4358402-4358482 45 2.28e-05 TGACGTTAGA GCAGCGGC AGAAGTGCTC chrI:7656621-7656701 15 2.28e-05 TCCTTTGAAG GCAGCGGC ATTTTGAAAT chrI:5412616-5412696 14 2.90e-05 TCAACAGAGA GGAGCGGC GGCGGCAAAA chrIV:2664930-2665010 51 4.16e-05 GGTGCTGGTT GGCGCAGC CGGCAACACT chrII:14256135-14256215 54 5.28e-05 gttaggtctc gccgcggc cggattttcg chrV:13415633-13415713 13 5.91e-05 AGCTTTCGTA GGAGCCGC CCCAGTTGGA chrV:19527695-19527775 26 7.47e-05 TTCTGCACAG GTAGCAGC CACAGCTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAGCAGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:10858513-10858593 8.2e-06 44_[+1]_28 chrIII:1937994-1938074 8.2e-06 48_[+1]_24 chrX:16725154-16725234 8.2e-06 21_[+1]_51 chrV:117453-117533 8.2e-06 68_[+1]_4 chrIII:5230620-5230700 1.6e-05 5_[+1]_67 chrIII:9664684-9664764 1.6e-05 41_[+1]_31 chrIII:8785597-8785677 1.6e-05 45_[+1]_27 chrI:4358402-4358482 2.3e-05 44_[+1]_28 chrI:7656621-7656701 2.3e-05 14_[+1]_58 chrI:5412616-5412696 2.9e-05 13_[+1]_59 chrIV:2664930-2665010 4.2e-05 50_[+1]_22 chrII:14256135-14256215 5.3e-05 53_[+1]_19 chrV:13415633-13415713 5.9e-05 12_[+1]_60 chrV:19527695-19527775 7.5e-05 25_[+1]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAGCAGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSAGCAGC width=8 seqs=14 chrV:10858513-10858593 ( 45) GCAGCAGC 1 chrIII:1937994-1938074 ( 49) GCAGCAGC 1 chrX:16725154-16725234 ( 22) GCAGCAGC 1 chrV:117453-117533 ( 69) GCAGCAGC 1 chrIII:5230620-5230700 ( 6) GGAGCAGC 1 chrIII:9664684-9664764 ( 42) GGAGCAGC 1 chrIII:8785597-8785677 ( 46) GGAGCAGC 1 chrI:4358402-4358482 ( 45) GCAGCGGC 1 chrI:7656621-7656701 ( 15) GCAGCGGC 1 chrI:5412616-5412696 ( 14) GGAGCGGC 1 chrIV:2664930-2665010 ( 51) GGCGCAGC 1 chrII:14256135-14256215 ( 54) GCCGCGGC 1 chrV:13415633-13415713 ( 13) GGAGCCGC 1 chrV:19527695-19527775 ( 26) GTAGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAGCAGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 5.2e+002 -1045 -1045 221 -1045 -1045 120 99 -199 160 -60 -1045 -1045 -1045 -1045 221 -1045 -1045 220 -1045 -1045 118 -160 40 -1045 -1045 -1045 221 -1045 -1045 220 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAGCAGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 5.2e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.428571 0.071429 0.857143 0.142857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.642857 0.071429 0.285714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAGCAGC MEME-1 regular expression -------------------------------------------------------------------------------- G[CG]AGC[AG]GC -------------------------------------------------------------------------------- Time 7.29 secs. ******************************************************************************** ******************************************************************************** MOTIF CGTGGTGT MEME-2 width = 8 sites = 6 llr = 66 E-value = 1.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGTGGTGT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::::::: probability G :a:aa:a2 matrix T ::a::a:8 bits 2.2 ** ** * 2.0 ** ** * 1.8 ******* 1.5 ******* Relative 1.3 ******** Entropy 1.1 ******** (15.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGTGGTGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGGTGT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:5271710-5271790 9 1.08e-05 CTATCAAT CGTGGTGT CTCTCGGTCT chrI:12065806-12065886 64 1.08e-05 CCAGCGGTCT CGTGGTGT AGTGGTTAT chrV:3713925-3714005 51 1.08e-05 GACAACGCca cgtggtgt cagagtgtcc chrX:2932030-2932110 35 1.08e-05 ATAGCTTTTC CGTGGTGT GAAAATTACC chrIII:13724473-13724553 61 1.08e-05 TAGTGGTTca cgtggtgt caggctgtcc chrIII:1937994-1938074 64 1.90e-05 agcaacaggc cgtggtgg cggcggctc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGGTGT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:5271710-5271790 1.1e-05 8_[+2]_64 chrI:12065806-12065886 1.1e-05 63_[+2]_9 chrV:3713925-3714005 1.1e-05 50_[+2]_22 chrX:2932030-2932110 1.1e-05 34_[+2]_38 chrIII:13724473-13724553 1.1e-05 60_[+2]_12 chrIII:1937994-1938074 1.9e-05 63_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGGTGT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGTGGTGT width=8 seqs=6 chrV:5271710-5271790 ( 9) CGTGGTGT 1 chrI:12065806-12065886 ( 64) CGTGGTGT 1 chrV:3713925-3714005 ( 51) CGTGGTGT 1 chrX:2932030-2932110 ( 35) CGTGGTGT 1 chrIII:13724473-13724553 ( 61) CGTGGTGT 1 chrIII:1937994-1938074 ( 64) CGTGGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGGTGT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.229 E= 1.9e+004 -923 220 -923 -923 -923 -923 221 -923 -923 -923 -923 182 -923 -923 221 -923 -923 -923 221 -923 -923 -923 -923 182 -923 -923 221 -923 -923 -923 -37 155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGGTGT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.9e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.833333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGGTGT MEME-2 regular expression -------------------------------------------------------------------------------- CGTGGTGT -------------------------------------------------------------------------------- Time 11.05 secs. ******************************************************************************** ******************************************************************************** MOTIF RAAAAWNG MEME-3 width = 8 sites = 44 llr = 332 E-value = 2.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAAAAWNG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4aaaa62: pos.-specific C 1:::::3: probability G 5:::::2a matrix T :::::43: bits 2.2 * 2.0 * 1.8 **** * 1.5 **** * Relative 1.3 **** * Entropy 1.1 **** * (10.9 bits) 0.9 ***** * 0.7 ****** * 0.4 ****** * 0.2 ****** * 0.0 -------- Multilevel GAAAAATG consensus A TC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAWNG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15700564-15700644 40 1.84e-05 GTCAATGATC GAAAAACG TTTCTAACAA chrX:13356578-13356658 11 1.84e-05 CGGATGCTTT GAAAAACG AGGAAACGTC chrX:8243219-8243299 21 1.84e-05 ACTATCAGAA GAAAAACG AGAAGACATA chrX:13355126-13355206 11 1.84e-05 ACACAGCATT GAAAAACG TGTTGTCGGC chrIV:9672647-9672727 73 4.24e-05 GTATGACAGA GAAAAATG chrIV:13393263-13393343 63 8.48e-05 GGTAGGGACT GAAAAAGG GTGTCAAAGA chrII:9739043-9739123 52 8.48e-05 TGAAATGTAC GAAAAAGG GCGGAGATCG chrI:12065806-12065886 12 8.48e-05 AAAGTCTTTC AAAAAACG TGTAAAATAA chrIV:2772462-2772542 62 8.48e-05 TGATTCTAGA GAAAAAGG TCATGACAAT chrII:10016279-10016359 42 8.48e-05 GCCGTCTGCA AAAAAACG GCTGGCAATT chrII:14256135-14256215 12 1.16e-04 ATATTTATCG AAAAAAtg tgatttttga chrV:20499084-20499164 9 1.16e-04 ATACCGAG AAAAAATG TTTGTGACCG chrII:10447504-10447584 69 1.16e-04 ATTTTTGCAG AAAAAATG TTTG chrV:6221602-6221682 43 1.16e-04 TAGGAGACAC AAAAAATG CAAAACTGAC chrI:2253432-2253512 15 1.16e-04 gtagatctac aaaaaatg cgggagaaga chrX:1012594-1012674 44 1.59e-04 TGCGGCTCTT GAAAAAAG TCGGCTCTCG chrIII:11921850-11921930 44 1.59e-04 CAAAAACGGC GAAAATCG AGCAAATGAA chrII:4094489-4094569 65 1.83e-04 tgtaactctt gaaaattg agtttttg chrV:13202430-13202510 65 1.83e-04 AGCGACGGGT GAAAATTG GAAAAAGA chrIII:646655-646735 12 1.83e-04 TAGCAAGCCA GAAAATTG AATTTTCTTA chrX:8090013-8090093 13 1.83e-04 AGTTTCGGGA GAAAATTG AGTCAAGTCA chrII:12787905-12787985 62 1.83e-04 CGTAAAATTT GAAAATTG TGGAGTATGC chrX:2569253-2569333 31 1.83e-04 TGTCAAGAGC GAAAATTG CGTTGCCCAA chrX:13714903-13714983 73 2.07e-04 TTTTGTCTTT AAAAAAGG chrI:5412616-5412696 28 2.07e-04 CGGCGGCGGC AAAAAAGG AATTGTTCTA chrX:6749355-6749435 26 2.81e-04 TCGGGCAAAA AAAAATCG TCAACCAGCC chrX:12169515-12169595 45 2.81e-04 CAGAAAACAA GAAAATGG TAGCACGCTG chrX:16725154-16725234 36 2.81e-04 CAGCGGTGGA AAAAAAAG TTATTTTTCT chrIV:8042265-8042345 68 2.81e-04 TTAAGTTTAA AAAAAAAG ATTGT chrX:17636511-17636591 5 2.81e-04 AAAA AAAAAAAG ATTCCATCGA chrV:5592058-5592138 11 2.81e-04 CCAAAAAAAT AAAAAAAG CCATCATGGT chrX:1478077-1478157 56 2.81e-04 CCTCAGCGAG AAAAAAAG TGGGAACACC chrV:7744180-7744260 19 3.12e-04 ATGATGGCTC AAAAATTG TTATCAGTCG chrIII:11811482-11811562 40 3.12e-04 gatttgccgg aaaAATTG TTTGCTGTTC chrIV:5764511-5764591 27 3.55e-04 TGCTGCTGTA GAAAATAG AACCCTCTCT chrX:4148878-4148958 5 3.55e-04 TTAT CAAAAACG GCGGATGGCA chrX:7378730-7378810 42 3.55e-04 TACCATTCAA CAAAAACG TTTCTGGAGG chrV:13007279-13007359 11 3.55e-04 TCCACCACCT GAAAATAG AATTTATTGA chrIV:9868099-9868179 37 4.53e-04 TGAGAAGAAT CAAAAAGG AAGAGAAAAC chrIII:8739313-8739393 51 4.53e-04 TGTGTGCGTT CAAAAAGG CACTTTGTTA chrIII:13724473-13724553 28 4.53e-04 CTATTGTTCA AAAAATAG GATCTTCTCA chrIII:2786951-2787031 73 4.96e-04 GGTTTATTTG CAAAATCG chrIV:6845521-6845601 6 5.20e-04 ACTTT CAAAATTG AGTTTTCTCT chrIII:7495119-7495199 26 5.76e-04 CAGGGAATAC GAGAAACG AAAGTAAATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAWNG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15700564-15700644 1.8e-05 39_[+3]_33 chrX:13356578-13356658 1.8e-05 10_[+3]_62 chrX:8243219-8243299 1.8e-05 20_[+3]_52 chrX:13355126-13355206 1.8e-05 10_[+3]_62 chrIV:9672647-9672727 4.2e-05 72_[+3] chrIV:13393263-13393343 8.5e-05 62_[+3]_10 chrII:9739043-9739123 8.5e-05 51_[+3]_21 chrI:12065806-12065886 8.5e-05 11_[+3]_61 chrIV:2772462-2772542 8.5e-05 61_[+3]_11 chrII:10016279-10016359 8.5e-05 41_[+3]_31 chrII:14256135-14256215 0.00012 11_[+3]_61 chrV:20499084-20499164 0.00012 8_[+3]_64 chrII:10447504-10447584 0.00012 68_[+3]_4 chrV:6221602-6221682 0.00012 42_[+3]_30 chrI:2253432-2253512 0.00012 14_[+3]_58 chrX:1012594-1012674 0.00016 43_[+3]_29 chrIII:11921850-11921930 0.00016 43_[+3]_29 chrII:4094489-4094569 0.00018 64_[+3]_8 chrV:13202430-13202510 0.00018 64_[+3]_8 chrIII:646655-646735 0.00018 11_[+3]_61 chrX:8090013-8090093 0.00018 12_[+3]_60 chrII:12787905-12787985 0.00018 61_[+3]_11 chrX:2569253-2569333 0.00018 30_[+3]_42 chrX:13714903-13714983 0.00021 72_[+3] chrI:5412616-5412696 0.00021 27_[+3]_45 chrX:6749355-6749435 0.00028 25_[+3]_47 chrX:12169515-12169595 0.00028 44_[+3]_28 chrX:16725154-16725234 0.00028 35_[+3]_37 chrIV:8042265-8042345 0.00028 67_[+3]_5 chrX:17636511-17636591 0.00028 4_[+3]_68 chrV:5592058-5592138 0.00028 10_[+3]_62 chrX:1478077-1478157 0.00028 55_[+3]_17 chrV:7744180-7744260 0.00031 18_[+3]_54 chrIII:11811482-11811562 0.00031 39_[+3]_33 chrIV:5764511-5764591 0.00035 26_[+3]_46 chrX:4148878-4148958 0.00035 4_[+3]_68 chrX:7378730-7378810 0.00035 41_[+3]_31 chrV:13007279-13007359 0.00035 10_[+3]_62 chrIV:9868099-9868179 0.00045 36_[+3]_36 chrIII:8739313-8739393 0.00045 50_[+3]_22 chrIII:13724473-13724553 0.00045 27_[+3]_45 chrIII:2786951-2787031 0.0005 72_[+3] chrIV:6845521-6845601 0.00052 5_[+3]_67 chrIII:7495119-7495199 0.00058 25_[+3]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAWNG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAAAAWNG width=8 seqs=44 chrX:15700564-15700644 ( 40) GAAAAACG 1 chrX:13356578-13356658 ( 11) GAAAAACG 1 chrX:8243219-8243299 ( 21) GAAAAACG 1 chrX:13355126-13355206 ( 11) GAAAAACG 1 chrIV:9672647-9672727 ( 73) GAAAAATG 1 chrIV:13393263-13393343 ( 63) GAAAAAGG 1 chrII:9739043-9739123 ( 52) GAAAAAGG 1 chrI:12065806-12065886 ( 12) AAAAAACG 1 chrIV:2772462-2772542 ( 62) GAAAAAGG 1 chrII:10016279-10016359 ( 42) AAAAAACG 1 chrII:14256135-14256215 ( 12) AAAAAATG 1 chrV:20499084-20499164 ( 9) AAAAAATG 1 chrII:10447504-10447584 ( 69) AAAAAATG 1 chrV:6221602-6221682 ( 43) AAAAAATG 1 chrI:2253432-2253512 ( 15) AAAAAATG 1 chrX:1012594-1012674 ( 44) GAAAAAAG 1 chrIII:11921850-11921930 ( 44) GAAAATCG 1 chrII:4094489-4094569 ( 65) GAAAATTG 1 chrV:13202430-13202510 ( 65) GAAAATTG 1 chrIII:646655-646735 ( 12) GAAAATTG 1 chrX:8090013-8090093 ( 13) GAAAATTG 1 chrII:12787905-12787985 ( 62) GAAAATTG 1 chrX:2569253-2569333 ( 31) GAAAATTG 1 chrX:13714903-13714983 ( 73) AAAAAAGG 1 chrI:5412616-5412696 ( 28) AAAAAAGG 1 chrX:6749355-6749435 ( 26) AAAAATCG 1 chrX:12169515-12169595 ( 45) GAAAATGG 1 chrX:16725154-16725234 ( 36) AAAAAAAG 1 chrIV:8042265-8042345 ( 68) AAAAAAAG 1 chrX:17636511-17636591 ( 5) AAAAAAAG 1 chrV:5592058-5592138 ( 11) AAAAAAAG 1 chrX:1478077-1478157 ( 56) AAAAAAAG 1 chrV:7744180-7744260 ( 19) AAAAATTG 1 chrIII:11811482-11811562 ( 40) AAAAATTG 1 chrIV:5764511-5764591 ( 27) GAAAATAG 1 chrX:4148878-4148958 ( 5) CAAAAACG 1 chrX:7378730-7378810 ( 42) CAAAAACG 1 chrV:13007279-13007359 ( 11) GAAAATAG 1 chrIV:9868099-9868179 ( 37) CAAAAAGG 1 chrIII:8739313-8739393 ( 51) CAAAAAGG 1 chrIII:13724473-13724553 ( 28) AAAAATAG 1 chrIII:2786951-2787031 ( 73) CAAAATCG 1 chrIV:6845521-6845601 ( 6) CAAAATTG 1 chrIII:7495119-7495199 ( 26) GAGAAACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAWNG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.04855 E= 2.6e+004 53 -67 107 -1210 182 -1210 -1210 -1210 179 -1210 -325 -1210 182 -1210 -1210 -1210 182 -1210 -1210 -1210 117 -1210 -1210 36 -47 33 -25 27 -1210 -1210 221 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAWNG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 2.6e+004 0.409091 0.136364 0.454545 0.000000 1.000000 0.000000 0.000000 0.000000 0.977273 0.000000 0.022727 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.636364 0.000000 0.000000 0.363636 0.204545 0.272727 0.181818 0.340909 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAWNG MEME-3 regular expression -------------------------------------------------------------------------------- [GA]AAAA[AT][TCA]G -------------------------------------------------------------------------------- Time 14.74 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGGSGGC MEME-4 width = 8 sites = 2 llr = 23 E-value = 3.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGGSGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:::5::a probability G :aaa5aa: matrix T :::::::: bits 2.2 **** *** 2.0 **** *** 1.8 **** *** 1.5 **** *** Relative 1.3 **** *** Entropy 1.1 ******** (16.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGGGCGGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGSGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:16169814-16169894 33 9.59e-06 GATTAGCAGA CGGGGGGC AAAGATGGAT chrIV:13390901-13390981 57 9.59e-06 TACCTGAAGA CGGGCGGC AAGAGCATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGSGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:16169814-16169894 9.6e-06 32_[+4]_40 chrIV:13390901-13390981 9.6e-06 56_[+4]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGSGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGGSGGC width=8 seqs=2 chrIV:16169814-16169894 ( 33) CGGGGGGC 1 chrIV:13390901-13390981 ( 57) CGGGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGSGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 3.8e+004 -765 220 -765 -765 -765 -765 220 -765 -765 -765 220 -765 -765 -765 220 -765 -765 120 121 -765 -765 -765 220 -765 -765 -765 220 -765 -765 220 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGSGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.8e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGSGGC MEME-4 regular expression -------------------------------------------------------------------------------- CGGG[CG]GGC -------------------------------------------------------------------------------- Time 18.36 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCTGYTG MEME-5 width = 8 sites = 7 llr = 74 E-value = 5.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCTGYTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::a::6:: probability G :a::a::a matrix T a::a:4a: bits 2.2 ** * * 2.0 ** * * 1.8 ***** ** 1.5 ***** ** Relative 1.3 ***** ** Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCTGCTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGYTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:5764511-5764591 17 1.09e-05 CGTGATTGGT TGCTGCTG TAGAAAATAG chrII:14909236-14909316 31 1.09e-05 ATCTGGGGGG TGCTGCTG GGATATACCT chrII:7790778-7790858 69 1.09e-05 GAGGAAAGGT TGCTGCTG ACTG chrII:10393538-10393618 7 1.09e-05 tgattc tgctgctg ctCATCCTAG chrIII:7495119-7495199 7 2.51e-05 TTCCGC TGCTGTTG CCAGGGAATA chrII:12210962-12211042 24 2.51e-05 catttgattc tgctgttg atgttgttgc chrII:11836750-11836830 71 2.51e-05 GTTTGGTCAG TGCTGTTG GA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGYTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:5764511-5764591 1.1e-05 16_[+5]_56 chrII:14909236-14909316 1.1e-05 30_[+5]_42 chrII:7790778-7790858 1.1e-05 68_[+5]_4 chrII:10393538-10393618 1.1e-05 6_[+5]_66 chrIII:7495119-7495199 2.5e-05 6_[+5]_66 chrII:12210962-12211042 2.5e-05 23_[+5]_49 chrII:11836750-11836830 2.5e-05 70_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGYTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCTGYTG width=8 seqs=7 chrIV:5764511-5764591 ( 17) TGCTGCTG 1 chrII:14909236-14909316 ( 31) TGCTGCTG 1 chrII:7790778-7790858 ( 69) TGCTGCTG 1 chrII:10393538-10393618 ( 7) TGCTGCTG 1 chrIII:7495119-7495199 ( 7) TGCTGTTG 1 chrII:12210962-12211042 ( 24) TGCTGTTG 1 chrII:11836750-11836830 ( 71) TGCTGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGYTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1915 E= 5.4e+004 -945 -945 -945 182 -945 -945 221 -945 -945 220 -945 -945 -945 -945 -945 182 -945 -945 221 -945 -945 139 -945 59 -945 -945 -945 182 -945 -945 221 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGYTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 5.4e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.571429 0.000000 0.428571 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGYTG MEME-5 regular expression -------------------------------------------------------------------------------- TGCTG[CT]TG -------------------------------------------------------------------------------- Time 21.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14500764-14500844 5.44e-01 80 chrX:3290231-3290311 6.15e-01 80 chrX:3823997-3824077 9.88e-01 80 chrII:15025622-15025702 3.61e-01 80 chrV:117453-117533 2.37e-02 68_[+1(8.25e-06)]_4 chrV:8651519-8651599 5.23e-01 80 chrIV:5375106-5375186 2.06e-01 80 chrIII:9326687-9326767 8.75e-01 80 chrIV:17471559-17471639 5.34e-03 34_[+1(8.25e-06)]_10_[+1(1.65e-05)]_\ 20 chrI:10748343-10748423 9.80e-01 80 chrII:5341168-5341248 5.79e-01 80 chrV:11147569-11147649 6.01e-01 80 chrII:10016279-10016359 5.55e-04 13_[+1(9.26e-05)]_20_[+3(8.48e-05)]_\ 31 chrI:9100133-9100213 9.72e-01 80 chrIII:11694719-11694799 3.86e-01 80 chrV:4190324-4190404 9.67e-01 80 chrV:11859207-11859287 8.99e-01 80 chrX:12662859-12662939 2.05e-01 80 chrX:2569253-2569333 1.09e-01 80 chrII:7319591-7319671 5.76e-01 80 chrIII:13724473-13724553 8.59e-03 60_[+2(1.08e-05)]_12 chrV:11541378-11541458 7.02e-01 80 chrI:2253432-2253512 8.55e-02 80 chrIII:7738018-7738098 9.05e-01 80 chrV:18573439-18573519 4.82e-01 80 chrV:11803527-11803607 9.95e-01 80 chrV:9080135-9080215 4.12e-01 80 chrV:9075118-9075198 4.05e-01 80 chrIII:5551388-5551468 1.98e-01 80 chrIV:13390901-13390981 2.35e-03 56_[+4(9.59e-06)]_16 chrX:1478077-1478157 9.64e-02 80 chrV:15013023-15013103 4.35e-01 80 chrV:10887661-10887741 8.72e-01 80 chrIII:7736943-7737023 5.78e-01 80 chrX:17640942-17641022 7.98e-02 80 chrV:5410806-5410886 7.43e-02 80 chrV:10471942-10472022 9.99e-01 80 chrV:10968120-10968200 8.17e-01 80 chrII:10393538-10393618 5.99e-03 6_[+5(1.09e-05)]_66 chrII:9501106-9501186 7.68e-01 80 chrIII:8739313-8739393 6.12e-03 80 chrX:6456706-6456786 8.99e-01 80 chrV:11802637-11802717 8.69e-02 80 chrV:6226763-6226843 2.24e-01 80 chrII:9738784-9738864 8.49e-01 80 chrX:6127038-6127118 1.71e-01 80 chrV:14687324-14687404 4.00e-01 80 chrI:6498253-6498333 6.50e-01 80 chrIII:10711394-10711474 9.51e-01 80 chrV:20497765-20497845 4.76e-01 80 chrV:5592058-5592138 3.17e-01 80 chrII:11836750-11836830 9.08e-02 70_[+5(2.51e-05)]_2 chrX:13355126-13355206 2.45e-03 10_[+3(1.84e-05)]_62 chrIII:8400633-8400713 7.38e-01 80 chrI:10752127-10752207 7.91e-01 80 chrV:6221602-6221682 1.49e-01 80 chrV:13007279-13007359 3.09e-01 80 chrX:15706229-15706309 7.70e-01 80 chrX:8243219-8243299 1.44e-01 20_[+3(1.84e-05)]_52 chrIV:6099994-6100074 9.55e-01 80 chrX:17636511-17636591 7.93e-02 80 chrV:1158469-1158549 2.24e-01 80 chrV:11888112-11888192 4.44e-01 80 chrIII:5542117-5542197 9.12e-01 80 chrIV:12109317-12109397 4.05e-02 80 chrX:2932030-2932110 3.39e-02 34_[+2(1.08e-05)]_38 chrI:6836822-6836902 7.99e-01 80 chrX:17633328-17633408 2.42e-03 80 chrII:11151015-11151095 8.37e-01 80 chrIV:9868099-9868179 2.34e-02 80 chrV:16815091-16815171 8.08e-01 80 chrIV:7488622-7488702 9.06e-01 80 chrII:12210962-12211042 9.29e-02 23_[+5(2.51e-05)]_49 chrIII:8785597-8785677 1.03e-02 45_[+1(1.65e-05)]_27 chrV:19527695-19527775 1.17e-02 25_[+1(7.47e-05)]_47 chrX:12937764-12937844 8.80e-01 80 chrIV:9320082-9320162 9.99e-01 80 chrI:2622898-2622978 8.25e-01 80 chrIV:2772462-2772542 6.35e-02 61_[+3(8.48e-05)]_11 chrV:388617-388697 9.06e-01 80 chrV:9079089-9079169 9.25e-01 80 chrIV:2664930-2665010 2.86e-04 50_[+1(4.16e-05)]_22 chrIII:4491240-4491320 7.68e-01 80 chrI:5372415-5372495 8.23e-01 80 chrV:18573658-18573738 6.81e-02 80 chrX:5653902-5653982 4.31e-02 80 chrIV:8042265-8042345 3.64e-01 80 chrI:5033321-5033401 3.75e-01 80 chrI:14273821-14273901 9.19e-01 80 chrV:20164681-20164761 5.19e-01 80 chrV:13650015-13650095 2.18e-01 80 chrX:12759767-12759847 6.81e-01 80 chrX:6748110-6748190 6.21e-01 80 chrX:16725154-16725234 6.28e-04 21_[+1(8.25e-06)]_51 chrX:8476359-8476439 4.16e-01 80 chrX:15146564-15146644 7.86e-01 80 chrII:12787905-12787985 1.47e-01 80 chrX:4018861-4018941 4.18e-02 80 chrIII:3653086-3653166 5.88e-01 80 chrV:6247500-6247580 9.99e-01 80 chrII:8020688-8020768 7.69e-01 80 chrIII:7369498-7369578 8.43e-01 80 chrIV:17470225-17470305 4.47e-01 80 chrX:13356578-13356658 1.85e-03 10_[+3(1.84e-05)]_62 chrX:6522877-6522957 9.18e-01 80 chrX:12169515-12169595 4.80e-02 80 chrIII:4471885-4471965 1.93e-01 80 chrI:10777402-10777482 4.26e-01 80 chrIV:3612010-3612090 7.75e-01 80 chrII:13780933-13781013 8.48e-01 80 chrV:15480034-15480114 7.56e-01 80 chrII:13957545-13957625 1.45e-02 80 chrI:4804766-4804846 6.63e-01 80 chrII:4089340-4089420 4.98e-01 80 chrIV:11523953-11524033 1.94e-01 80 chrII:8742181-8742261 7.34e-01 80 chrII:8822838-8822918 2.45e-01 80 chrX:11476817-11476897 3.45e-01 80 chrII:7790778-7790858 5.02e-02 68_[+5(1.09e-05)]_4 chrIII:11921850-11921930 2.30e-01 80 chrIV:10950471-10950551 6.53e-01 80 chrIV:16169814-16169894 2.97e-02 32_[+4(9.59e-06)]_40 chrI:9850891-9850971 6.12e-01 80 chrIII:11829869-11829949 7.54e-01 80 chrIII:7978473-7978553 8.29e-01 80 chrIII:8975086-8975166 3.99e-01 80 chrV:3713925-3714005 6.90e-02 50_[+2(1.08e-05)]_22 chrIV:8530707-8530787 8.93e-01 80 chrIV:4413102-4413182 7.70e-01 80 chrIV:11503781-11503861 7.82e-01 80 chrII:8765327-8765407 3.35e-01 80 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chrIV:9672647-9672727 1.24e-02 72_[+3(4.24e-05)] chrIII:646655-646735 4.35e-01 80 chrX:8155807-8155887 7.15e-01 80 chrX:7378730-7378810 2.51e-01 80 chrIII:2786951-2787031 1.35e-01 80 chrI:7656621-7656701 1.08e-01 14_[+1(2.28e-05)]_58 chrX:13470774-13470854 4.81e-01 80 chrX:4148878-4148958 1.02e-01 80 chrI:11999438-11999518 8.18e-02 80 chrI:4358402-4358482 1.99e-02 44_[+1(2.28e-05)]_28 chrI:12654751-12654831 1.21e-02 80 chrIV:7053735-7053815 8.78e-01 80 chrX:15700564-15700644 6.72e-02 39_[+3(1.84e-05)]_33 chrV:5271710-5271790 8.59e-02 8_[+2(1.08e-05)]_64 chrII:14838716-14838796 3.57e-01 80 chrX:7986949-7987029 5.32e-01 80 chrV:7744180-7744260 5.64e-03 80 chrV:6559726-6559806 4.51e-01 80 chrIII:12325396-12325476 8.50e-01 80 chrIII:3739918-3739998 2.55e-01 80 chrIV:6845521-6845601 6.26e-01 80 chrV:5836360-5836440 9.87e-01 80 chrI:9624703-9624783 4.53e-01 80 chrX:8211246-8211326 7.13e-01 80 chrII:11846064-11846144 3.81e-01 80 chrX:4532200-4532280 1.00e+00 80 chrX:13730670-13730750 4.98e-01 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chrX:6749355-6749435 2.04e-01 80 chrI:12552789-12552869 1.35e-01 80 chrV:13892656-13892736 6.48e-01 80 chrII:2860302-2860382 2.36e-01 80 chrIII:10746473-10746553 7.20e-01 80 chrX:1012594-1012674 1.20e-03 80 chrII:4094489-4094569 2.39e-01 80 chrI:13371310-13371390 6.75e-01 80 chrII:8818497-8818577 5.29e-02 80 chrII:8740509-8740589 1.00e+00 80 chrIII:5196530-5196610 7.82e-01 80 chrV:10858513-10858593 1.14e-02 38_[+1(8.25e-06)]_34 chrII:15261180-15261260 9.95e-01 80 chrII:13462284-13462364 8.49e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************