******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/gei-17.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:10756363-10756443 1.0000 80 chrX:1492321-1492401 1.0000 80 chrX:5106603-5106683 1.0000 80 chrX:15983439-15983519 1.0000 80 chrX:1371022-1371102 1.0000 80 chrX:1339058-1339138 1.0000 80 chrX:16695340-16695420 1.0000 80 chrX:4208672-4208752 1.0000 80 chrX:11924307-11924387 1.0000 80 chrI:9095779-9095859 1.0000 80 chrX:17545691-17545771 1.0000 80 chrX:16202374-16202454 1.0000 80 chrX:1989744-1989824 1.0000 80 chrIV:15059341-15059421 1.0000 80 chrX:3409098-3409178 1.0000 80 chrX:785501-785581 1.0000 80 chrX:8048812-8048892 1.0000 80 chrI:9131230-9131310 1.0000 80 chrX:1437277-1437357 1.0000 80 chrII:11731503-11731583 1.0000 80 chrI:7868997-7869077 1.0000 80 chrM:8843-8923 1.0000 80 chrX:1888554-1888634 1.0000 80 chrV:8939800-8939880 1.0000 80 chrX:5106818-5106898 1.0000 80 chrII:5575064-5575144 1.0000 80 chrIII:11694666-11694746 1.0000 80 chrV:6278455-6278535 1.0000 80 chrX:17288557-17288637 1.0000 80 chrV:5587190-5587270 1.0000 80 chrV:13907851-13907931 1.0000 80 chrM:10062-10142 1.0000 80 chrX:15736611-15736691 1.0000 80 chrI:6094570-6094650 1.0000 80 chrM:11422-11502 1.0000 80 chrX:6522906-6522986 1.0000 80 chrM:3585-3665 1.0000 80 chrX:3409337-3409417 1.0000 80 chrX:11522223-11522303 1.0000 80 chrM:4943-5023 1.0000 80 chrX:17181389-17181469 1.0000 80 chrX:1503792-1503872 1.0000 80 chrX:1387130-1387210 1.0000 80 chrIII:5506414-5506494 1.0000 80 chrX:10668036-10668116 1.0000 80 chrI:7493047-7493127 1.0000 80 chrX:403161-403241 1.0000 80 chrX:13349476-13349556 1.0000 80 chrX:1369808-1369888 1.0000 80 chrM:11090-11170 1.0000 80 chrX:8104044-8104124 1.0000 80 chrM:8212-8292 1.0000 80 chrX:13442577-13442657 1.0000 80 chrV:20164691-20164771 1.0000 80 chrX:14813508-14813588 1.0000 80 chrIV:12037175-12037255 1.0000 80 chrV:10953903-10953983 1.0000 80 chrI:6838182-6838262 1.0000 80 chrII:12994089-12994169 1.0000 80 chrX:14476849-14476929 1.0000 80 chrII:2378612-2378692 1.0000 80 chrX:17419867-17419947 1.0000 80 chrX:11790731-11790811 1.0000 80 chrV:4823919-4823999 1.0000 80 chrV:5780896-5780976 1.0000 80 chrII:8744389-8744469 1.0000 80 chrI:5372413-5372493 1.0000 80 chrX:5354639-5354719 1.0000 80 chrX:6252399-6252479 1.0000 80 chrIII:11830652-11830732 1.0000 80 chrM:3031-3111 1.0000 80 chrII:11149900-11149980 1.0000 80 chrV:18573315-18573395 1.0000 80 chrV:4190307-4190387 1.0000 80 chrIV:16169742-16169822 1.0000 80 chrII:12796170-12796250 1.0000 80 chrI:2869901-2869981 1.0000 80 chrX:4246236-4246316 1.0000 80 chrIII:7278644-7278724 1.0000 80 chrM:10853-10933 1.0000 80 chrI:7656651-7656731 1.0000 80 chrX:11603415-11603495 1.0000 80 chrII:8746481-8746561 1.0000 80 chrX:4395573-4395653 1.0000 80 chrV:12004714-12004794 1.0000 80 chrV:12406817-12406897 1.0000 80 chrIII:8443701-8443781 1.0000 80 chrV:1158490-1158570 1.0000 80 chrI:6499906-6499986 1.0000 80 chrIV:17281622-17281702 1.0000 80 chrIV:8377526-8377606 1.0000 80 chrV:19519594-19519674 1.0000 80 chrX:1486400-1486480 1.0000 80 chrI:12956011-12956091 1.0000 80 chrX:2402098-2402178 1.0000 80 chrII:14801412-14801492 1.0000 80 chrIV:16170809-16170889 1.0000 80 chrX:1909519-1909599 1.0000 80 chrX:16327348-16327428 1.0000 80 chrM:985-1065 1.0000 80 chrI:9096663-9096743 1.0000 80 chrX:1504867-1504947 1.0000 80 chrX:2215298-2215378 1.0000 80 chrV:20848043-20848123 1.0000 80 chrIV:11913374-11913454 1.0000 80 chrX:3111849-3111929 1.0000 80 chrII:10542866-10542946 1.0000 80 chrX:1010996-1011076 1.0000 80 chrI:9128920-9129000 1.0000 80 chrV:727679-727759 1.0000 80 chrV:11572990-11573070 1.0000 80 chrX:7788093-7788173 1.0000 80 chrIII:5501792-5501872 1.0000 80 chrIV:9438876-9438956 1.0000 80 chrX:15568462-15568542 1.0000 80 chrX:15076142-15076222 1.0000 80 chrV:19521321-19521401 1.0000 80 chrV:8039495-8039575 1.0000 80 chrV:8039189-8039269 1.0000 80 chrX:7181761-7181841 1.0000 80 chrIV:8949796-8949876 1.0000 80 chrX:16931583-16931663 1.0000 80 chrM:7225-7305 1.0000 80 chrI:8868451-8868531 1.0000 80 chrII:2330621-2330701 1.0000 80 chrI:2689165-2689245 1.0000 80 chrX:13105088-13105168 1.0000 80 chrX:8089579-8089659 1.0000 80 chrX:1323162-1323242 1.0000 80 chrII:15229715-15229795 1.0000 80 chrV:13986737-13986817 1.0000 80 chrV:13658728-13658808 1.0000 80 chrIV:15899444-15899524 1.0000 80 chrIII:13720474-13720554 1.0000 80 chrIII:12614736-12614816 1.0000 80 chrIV:5083270-5083350 1.0000 80 chrX:4148348-4148428 1.0000 80 chrX:6449190-6449270 1.0000 80 chrIII:11922021-11922101 1.0000 80 chrII:6346663-6346743 1.0000 80 chrM:6029-6109 1.0000 80 chrX:15200881-15200961 1.0000 80 chrX:8084111-8084191 1.0000 80 chrX:4193271-4193351 1.0000 80 chrIII:11090321-11090401 1.0000 80 chrI:7015742-7015822 1.0000 80 chrIV:16168810-16168890 1.0000 80 chrX:16205972-16206052 1.0000 80 chrII:10302736-10302816 1.0000 80 chrIII:5942589-5942669 1.0000 80 chrX:14610530-14610610 1.0000 80 chrII:3036542-3036622 1.0000 80 chrIII:4195515-4195595 1.0000 80 chrX:15842648-15842728 1.0000 80 chrIV:4511665-4511745 1.0000 80 chrM:9116-9196 1.0000 80 chrV:20162054-20162134 1.0000 80 chrIV:3313520-3313600 1.0000 80 chrII:2920957-2921037 1.0000 80 chrIV:2709792-2709872 1.0000 80 chrV:18619290-18619370 1.0000 80 chrX:2971714-2971794 1.0000 80 chrX:6042258-6042338 1.0000 80 chrV:10342035-10342115 1.0000 80 chrI:2667919-2667999 1.0000 80 chrI:7079368-7079448 1.0000 80 chrII:4902171-4902251 1.0000 80 chrIV:11913599-11913679 1.0000 80 chrIII:13763500-13763580 1.0000 80 chrIII:9509988-9510068 1.0000 80 chrIII:9824658-9824738 1.0000 80 chrIV:3336653-3336733 1.0000 80 chrIV:9530784-9530864 1.0000 80 chrX:8163775-8163855 1.0000 80 chrV:19521526-19521606 1.0000 80 chrIV:6329803-6329883 1.0000 80 chrIII:7338863-7338943 1.0000 80 chrX:14500773-14500853 1.0000 80 chrV:16593144-16593224 1.0000 80 chrV:1875692-1875772 1.0000 80 chrI:2878722-2878802 1.0000 80 chrIV:17470137-17470217 1.0000 80 chrV:14688681-14688761 1.0000 80 chrI:10104356-10104436 1.0000 80 chrX:1319958-1320038 1.0000 80 chrX:11339516-11339596 1.0000 80 chrX:6735705-6735785 1.0000 80 chrIV:11956525-11956605 1.0000 80 chrM:2118-2198 1.0000 80 chrV:14366746-14366826 1.0000 80 chrII:8933871-8933951 1.0000 80 chrIV:11183201-11183281 1.0000 80 chrII:11974721-11974801 1.0000 80 chrI:14058800-14058880 1.0000 80 chrX:12509525-12509605 1.0000 80 chrV:8936261-8936341 1.0000 80 chrI:11584868-11584948 1.0000 80 chrX:14146908-14146988 1.0000 80 chrX:13514531-13514611 1.0000 80 chrI:4769681-4769761 1.0000 80 chrV:6225988-6226068 1.0000 80 chrX:13358703-13358783 1.0000 80 chrIII:1616675-1616755 1.0000 80 chrIV:16167339-16167419 1.0000 80 chrI:1051014-1051094 1.0000 80 chrX:8477639-8477719 1.0000 80 chrV:14688441-14688521 1.0000 80 chrV:5271596-5271676 1.0000 80 chrIV:8795228-8795308 1.0000 80 chrI:2864137-2864217 1.0000 80 chrIV:3636655-3636735 1.0000 80 chrIV:13388959-13389039 1.0000 80 chrII:11376783-11376863 1.0000 80 chrIV:2111308-2111388 1.0000 80 chrX:15725169-15725249 1.0000 80 chrIV:11479039-11479119 1.0000 80 chrX:17544477-17544557 1.0000 80 chrX:16024689-16024769 1.0000 80 chrIII:1419960-1420040 1.0000 80 chrX:10332304-10332384 1.0000 80 chrIV:17281419-17281499 1.0000 80 chrV:20497736-20497816 1.0000 80 chrI:7084569-7084649 1.0000 80 chrIII:5196386-5196466 1.0000 80 chrV:19519795-19519875 1.0000 80 chrIV:14033269-14033349 1.0000 80 chrX:1504004-1504084 1.0000 80 chrIV:7984115-7984195 1.0000 80 chrI:13351128-13351208 1.0000 80 chrII:5321952-5322032 1.0000 80 chrI:7493254-7493334 1.0000 80 chrV:2600701-2600781 1.0000 80 chrX:10158886-10158966 1.0000 80 chrX:12452338-12452418 1.0000 80 chrX:5653931-5654011 1.0000 80 chrIII:7141383-7141463 1.0000 80 chrII:11224285-11224365 1.0000 80 chrV:11541517-11541597 1.0000 80 chrX:15709691-15709771 1.0000 80 chrII:4891517-4891597 1.0000 80 chrV:6515024-6515104 1.0000 80 chrII:2565061-2565141 1.0000 80 chrX:13108885-13108965 1.0000 80 chrX:12872407-12872487 1.0000 80 chrV:15187778-15187858 1.0000 80 chrIII:7376592-7376672 1.0000 80 chrX:2364854-2364934 1.0000 80 chrIII:11918506-11918586 1.0000 80 chrII:11728792-11728872 1.0000 80 chrX:9999650-9999730 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_gei-17/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/gei-17.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.285 C 0.214 G 0.213 T 0.287 Background letter frequencies (from file dataset with add-one prior applied): A 0.285 C 0.214 G 0.213 T 0.287 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGCAGGG MEME-1 width = 8 sites = 14 llr = 143 E-value = 2.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCAGGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::391:: pos.-specific C :a:6:::1 probability G a:a1:9a9 matrix T ::::1::: bits 2.2 *** * 2.0 *** * 1.8 *** ** 1.6 *** *** Relative 1.3 *** **** Entropy 1.1 *** **** (14.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCAGGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13514531-13514611 27 5.72e-06 TACCTTTATC GCGCAGGG ATATTGAAAT chrX:4395573-4395653 42 5.72e-06 AAGGAGACAA GCGCAGGG AGAACTGGTG chrX:1437277-1437357 18 5.72e-06 AATGGAAATT GCGCAGGG AGGCTGGGTA chrX:4208672-4208752 67 5.72e-06 AAGTCTCATT GCGCAGGG ACACCC chrX:1371022-1371102 32 5.72e-06 TTACAAAAAG GCGCAGGG AAATTACGGA chrII:4891517-4891597 17 1.33e-05 GACACTGAGA GCGAAGGG TTCAAAAGCG chrX:17544477-17544557 41 1.33e-05 ATTTTTTATT GCGAAGGG AGAATAACAA chrX:7181761-7181841 2 1.33e-05 A GCGAAGGG TATAGAACAG chrX:1492321-1492401 20 1.33e-05 AATTCATATC GCGAAGGG TGCATATATC chrX:1339058-1339138 24 2.10e-05 GGTTTCTATC GCGCAAGG AGACTATTCT chrX:15983439-15983519 70 2.10e-05 GATTTTTTTG GCGCAAGG AAA chrX:8048812-8048892 21 2.67e-05 TAATTGTATC GCGGAGGG AGAATCAAGA chrIII:7278644-7278724 21 3.82e-05 AAAATGTCTG GCGCTGGG AGAGTATGTG chrX:8104044-8104124 15 3.82e-05 TGTCGTTGTC GCGCAGGC CACGATAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13514531-13514611 5.7e-06 26_[+1]_46 chrX:4395573-4395653 5.7e-06 41_[+1]_31 chrX:1437277-1437357 5.7e-06 17_[+1]_55 chrX:4208672-4208752 5.7e-06 66_[+1]_6 chrX:1371022-1371102 5.7e-06 31_[+1]_41 chrII:4891517-4891597 1.3e-05 16_[+1]_56 chrX:17544477-17544557 1.3e-05 40_[+1]_32 chrX:7181761-7181841 1.3e-05 1_[+1]_71 chrX:1492321-1492401 1.3e-05 19_[+1]_53 chrX:1339058-1339138 2.1e-05 23_[+1]_49 chrX:15983439-15983519 2.1e-05 69_[+1]_3 chrX:8048812-8048892 2.7e-05 20_[+1]_52 chrIII:7278644-7278724 3.8e-05 20_[+1]_52 chrX:8104044-8104124 3.8e-05 14_[+1]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCAGGG width=8 seqs=14 chrX:13514531-13514611 ( 27) GCGCAGGG 1 chrX:4395573-4395653 ( 42) GCGCAGGG 1 chrX:1437277-1437357 ( 18) GCGCAGGG 1 chrX:4208672-4208752 ( 67) GCGCAGGG 1 chrX:1371022-1371102 ( 32) GCGCAGGG 1 chrII:4891517-4891597 ( 17) GCGAAGGG 1 chrX:17544477-17544557 ( 41) GCGAAGGG 1 chrX:7181761-7181841 ( 2) GCGAAGGG 1 chrX:1492321-1492401 ( 20) GCGAAGGG 1 chrX:1339058-1339138 ( 24) GCGCAAGG 1 chrX:15983439-15983519 ( 70) GCGCAAGG 1 chrX:8048812-8048892 ( 21) GCGGAGGG 1 chrIII:7278644-7278724 ( 21) GCGCTGGG 1 chrX:8104044-8104124 ( 15) GCGCAGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5702 E= 2.1e-001 -1045 -1045 223 -1045 -1045 222 -1045 -1045 -1045 -1045 223 -1045 0 158 -157 -1045 170 -1045 -1045 -201 -100 -1045 201 -1045 -1045 -1045 223 -1045 -1045 -158 212 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 2.1e-001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.285714 0.642857 0.071429 0.000000 0.928571 0.000000 0.000000 0.071429 0.142857 0.000000 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.071429 0.928571 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGGG MEME-1 regular expression -------------------------------------------------------------------------------- GCG[CA]AGGG -------------------------------------------------------------------------------- Time 9.16 secs. ******************************************************************************** ******************************************************************************** MOTIF CYGCGTCT MEME-2 width = 8 sites = 11 llr = 110 E-value = 9.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYGCGTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a4:a2:a: probability G ::a:8::2 matrix T :6:::a:8 bits 2.2 * ** * 2.0 * ** * 1.8 * ** ** 1.6 * ***** Relative 1.3 * ***** Entropy 1.1 ******** (14.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYGCGTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:2864137-2864217 5 1.05e-05 GTGT CTGCGTCT CCACCTCGTC chrII:2920957-2921037 21 1.05e-05 CTCCACACGC CTGCGTCT CCTATCCCTC chrX:14610530-14610610 54 1.05e-05 GCAAACGCGT CTGCGTCT CTCACGGGCC chrX:1323162-1323242 71 1.05e-05 ACCTAGTGTT CTGCGTCT CT chrI:9128920-9129000 12 1.05e-05 CGTTGATCGT CTGCGTCT CCGAGTCAGG chrII:2378612-2378692 66 1.05e-05 TCAGGCGTCG CTGCGTCT AAACCAT chrI:9095779-9095859 12 1.05e-05 ATCTCATCGT CTGCGTCT CAATTTTTCT chrIV:3636655-3636735 44 1.83e-05 CACCCGCGTG CCGCGTCT CATCGCCCCA chrX:12452338-12452418 25 3.20e-05 TGTTGCGTGT CCGCGTCG CGACGAGCCA chrV:6515024-6515104 47 5.04e-05 GGTCAACACA CCGCCTCT TCCTCGTACC chrIII:12614736-12614816 60 6.41e-05 CCCCTTTTTG CCGCCTCG CTGACTGCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYGCGTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:2864137-2864217 1.1e-05 4_[+2]_68 chrII:2920957-2921037 1.1e-05 20_[+2]_52 chrX:14610530-14610610 1.1e-05 53_[+2]_19 chrX:1323162-1323242 1.1e-05 70_[+2]_2 chrI:9128920-9129000 1.1e-05 11_[+2]_61 chrII:2378612-2378692 1.1e-05 65_[+2]_7 chrI:9095779-9095859 1.1e-05 11_[+2]_61 chrIV:3636655-3636735 1.8e-05 43_[+2]_29 chrX:12452338-12452418 3.2e-05 24_[+2]_48 chrV:6515024-6515104 5e-05 46_[+2]_26 chrIII:12614736-12614816 6.4e-05 59_[+2]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYGCGTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYGCGTCT width=8 seqs=11 chrI:2864137-2864217 ( 5) CTGCGTCT 1 chrII:2920957-2921037 ( 21) CTGCGTCT 1 chrX:14610530-14610610 ( 54) CTGCGTCT 1 chrX:1323162-1323242 ( 71) CTGCGTCT 1 chrI:9128920-9129000 ( 12) CTGCGTCT 1 chrII:2378612-2378692 ( 66) CTGCGTCT 1 chrI:9095779-9095859 ( 12) CTGCGTCT 1 chrIV:3636655-3636735 ( 44) CCGCGTCT 1 chrX:12452338-12452418 ( 25) CCGCGTCG 1 chrV:6515024-6515104 ( 47) CCGCCTCT 1 chrIII:12614736-12614816 ( 60) CCGCCTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYGCGTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 9.9e+003 -1010 222 -1010 -1010 -1010 76 -1010 115 -1010 -1010 223 -1010 -1010 222 -1010 -1010 -1010 -24 194 -1010 -1010 -1010 -1010 180 -1010 222 -1010 -1010 -1010 -1010 -23 151 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYGCGTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 9.9e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.363636 0.000000 0.636364 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.181818 0.818182 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.181818 0.818182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYGCGTCT MEME-2 regular expression -------------------------------------------------------------------------------- C[TC]GCGTCT -------------------------------------------------------------------------------- Time 12.97 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGARAAA MEME-3 width = 8 sites = 23 llr = 204 E-value = 4.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGARAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2::a6a8a pos.-specific C :a:::::: probability G ::a:4:2: matrix T 8::::::: bits 2.2 * 2.0 ** 1.8 *** * * 1.6 *** * * Relative 1.3 *** * * Entropy 1.1 ******** (12.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGAAAAA consensus A G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGARAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:7493254-7493334 4 4.30e-05 TTT TCGAAAAA AAAACTGCAG chrV:19519795-19519875 32 4.30e-05 CCACGTTTTT TCGAGAAA AAATATATTT chrV:10342035-10342115 13 4.30e-05 CTCTCATATG TCGAGAAA TGCGGAAAAA chrII:15229715-15229795 61 4.30e-05 AGAGAAAATA TCGAAAAA ATCCGATTTT chrII:2330621-2330701 23 4.30e-05 tctggaaaat tcgagaaa attctggaat chrX:16931583-16931663 51 4.30e-05 CAATCAAAAT TCGAAAAA ACCTAAATCC chrX:4246236-4246316 16 4.30e-05 GACAATTTTA TCGAAAAA TGGTTCAAGT chrV:18573315-18573395 33 4.30e-05 AACTACTGTA TCGAGAAA TGCGCCAAGG chrX:1369808-1369888 6 4.30e-05 GCTAT TCGAAAAA AATTGGGCAA chrIII:11694666-11694746 8 4.30e-05 CCAATTT TCGAAAAA AAAAAGAAAA chrI:7868997-7869077 48 4.30e-05 cctagaaaaa tcgagaaa attctggaat chrX:16202374-16202454 13 4.30e-05 CAGATACGCA TCGAGAAA GAGACGAAAA chrIII:7376592-7376672 60 7.51e-05 TCCCTTCACA TCGAAAGA AGGACGGAGA chrIII:7141383-7141463 52 7.51e-05 ATTCGATCTT TCGAAAGA ATGTGTCGAA chrIII:1419960-1420040 36 7.51e-05 TCAGTGCTTT TCGAAAGA GGTTGCATTT chrX:15725169-15725249 23 7.51e-05 GCGCGCGGAA TCGAGAGA GAGGAGAGGA chrV:12406817-12406897 73 7.51e-05 TGAGGATGGA TCGAAAGA chrI:1051014-1051094 61 1.18e-04 AACCGAGAGA ACGAAAAA CGCGACAAAG chrIV:2709792-2709872 16 1.18e-04 tctctgggag acgagaaa aaatacaATA chrII:3036542-3036622 50 1.18e-04 GCGCCAAATC ACGAGAAA CTCGCCAATG chrX:7788093-7788173 53 1.18e-04 GACATGGGAT ACGAAAAA AGAGATAGCG chrV:4823919-4823999 14 1.18e-04 TTGAAAAAGT ACGAAAAA AATGTATTGC chrIV:5083270-5083350 28 1.93e-04 GTTTAATTCT TCCAGAAA CCAATAACTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGARAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:7493254-7493334 4.3e-05 3_[+3]_69 chrV:19519795-19519875 4.3e-05 31_[+3]_41 chrV:10342035-10342115 4.3e-05 12_[+3]_60 chrII:15229715-15229795 4.3e-05 60_[+3]_12 chrII:2330621-2330701 4.3e-05 22_[+3]_50 chrX:16931583-16931663 4.3e-05 50_[+3]_22 chrX:4246236-4246316 4.3e-05 15_[+3]_57 chrV:18573315-18573395 4.3e-05 32_[+3]_40 chrX:1369808-1369888 4.3e-05 5_[+3]_67 chrIII:11694666-11694746 4.3e-05 7_[+3]_65 chrI:7868997-7869077 4.3e-05 47_[+3]_25 chrX:16202374-16202454 4.3e-05 12_[+3]_60 chrIII:7376592-7376672 7.5e-05 59_[+3]_13 chrIII:7141383-7141463 7.5e-05 51_[+3]_21 chrIII:1419960-1420040 7.5e-05 35_[+3]_37 chrX:15725169-15725249 7.5e-05 22_[+3]_50 chrV:12406817-12406897 7.5e-05 72_[+3] chrI:1051014-1051094 0.00012 60_[+3]_12 chrIV:2709792-2709872 0.00012 15_[+3]_57 chrII:3036542-3036622 0.00012 49_[+3]_23 chrX:7788093-7788173 0.00012 52_[+3]_20 chrV:4823919-4823999 0.00012 13_[+3]_59 chrIV:5083270-5083350 0.00019 27_[+3]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGARAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGARAAA width=8 seqs=23 chrI:7493254-7493334 ( 4) TCGAAAAA 1 chrV:19519795-19519875 ( 32) TCGAGAAA 1 chrV:10342035-10342115 ( 13) TCGAGAAA 1 chrII:15229715-15229795 ( 61) TCGAAAAA 1 chrII:2330621-2330701 ( 23) TCGAGAAA 1 chrX:16931583-16931663 ( 51) TCGAAAAA 1 chrX:4246236-4246316 ( 16) TCGAAAAA 1 chrV:18573315-18573395 ( 33) TCGAGAAA 1 chrX:1369808-1369888 ( 6) TCGAAAAA 1 chrIII:11694666-11694746 ( 8) TCGAAAAA 1 chrI:7868997-7869077 ( 48) TCGAGAAA 1 chrX:16202374-16202454 ( 13) TCGAGAAA 1 chrIII:7376592-7376672 ( 60) TCGAAAGA 1 chrIII:7141383-7141463 ( 52) TCGAAAGA 1 chrIII:1419960-1420040 ( 36) TCGAAAGA 1 chrX:15725169-15725249 ( 23) TCGAGAGA 1 chrV:12406817-12406897 ( 73) TCGAAAGA 1 chrI:1051014-1051094 ( 61) ACGAAAAA 1 chrIV:2709792-2709872 ( 16) ACGAGAAA 1 chrII:3036542-3036622 ( 50) ACGAGAAA 1 chrX:7788093-7788173 ( 53) ACGAAAAA 1 chrV:4823919-4823999 ( 14) ACGAAAAA 1 chrIV:5083270-5083350 ( 28) TCCAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGARAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0332 E= 4.1e+001 -39 -1117 -1117 144 -1117 222 -1117 -1117 -1117 -230 217 -1117 181 -1117 -1117 -1117 99 -1117 103 -1117 181 -1117 -1117 -1117 146 -1117 3 -1117 181 -1117 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGARAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 4.1e+001 0.217391 0.000000 0.000000 0.782609 0.000000 1.000000 0.000000 0.000000 0.000000 0.043478 0.956522 0.000000 1.000000 0.000000 0.000000 0.000000 0.565217 0.000000 0.434783 0.000000 1.000000 0.000000 0.000000 0.000000 0.782609 0.000000 0.217391 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGARAAA MEME-3 regular expression -------------------------------------------------------------------------------- [TA]CGA[AG]A[AG]A -------------------------------------------------------------------------------- Time 16.63 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGGGCG MEME-4 width = 8 sites = 2 llr = 25 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGGGCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :aa:::a: probability G a::aaa:a matrix T :::::::: bits 2.2 ******** 2.0 ******** 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCGGGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGGCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:2864137-2864217 73 4.30e-06 GTCTCTCGTC GCCGGGCG chrV:8936261-8936341 63 4.30e-06 AATGGGCGTG GCCGGGCG CCCGCCATCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGGCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:2864137-2864217 4.3e-06 72_[+4] chrV:8936261-8936341 4.3e-06 62_[+4]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGGCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGGGCG width=8 seqs=2 chrI:2864137-2864217 ( 73) GCCGGGCG 1 chrV:8936261-8936341 ( 63) GCCGGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGGCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 1.1e+004 -765 -765 222 -765 -765 222 -765 -765 -765 222 -765 -765 -765 -765 222 -765 -765 -765 222 -765 -765 -765 222 -765 -765 222 -765 -765 -765 -765 222 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGGCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.1e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGGCG MEME-4 regular expression -------------------------------------------------------------------------------- GCCGGGCG -------------------------------------------------------------------------------- Time 20.25 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCGGGA MEME-5 width = 8 sites = 2 llr = 24 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCGGGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C :::a:::: probability G aaa:aaa: matrix T :::::::: bits 2.2 ******* 2.0 ******* 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGGGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:10104356-10104436 30 5.70e-06 GGAGGTTAGA GGGCGGGA ACGAGAGAGA chrX:5106603-5106683 37 5.70e-06 AACAGCCGTT GGGCGGGA AATCGTTAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:10104356-10104436 5.7e-06 29_[+5]_43 chrX:5106603-5106683 5.7e-06 36_[+5]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCGGGA width=8 seqs=2 chrI:10104356-10104436 ( 30) GGGCGGGA 1 chrX:5106603-5106683 ( 37) GGGCGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.3073 E= 1.6e+004 -765 -765 222 -765 -765 -765 222 -765 -765 -765 222 -765 -765 222 -765 -765 -765 -765 222 -765 -765 -765 222 -765 -765 -765 222 -765 180 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.6e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGA MEME-5 regular expression -------------------------------------------------------------------------------- GGGCGGGA -------------------------------------------------------------------------------- Time 23.90 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10756363-10756443 3.14e-01 80 chrX:1492321-1492401 2.54e-02 19_[+1(1.33e-05)]_53 chrX:5106603-5106683 9.27e-03 36_[+5(5.70e-06)]_36 chrX:15983439-15983519 1.19e-01 69_[+1(2.10e-05)]_3 chrX:1371022-1371102 9.25e-03 31_[+1(5.72e-06)]_41 chrX:1339058-1339138 8.53e-02 23_[+1(2.10e-05)]_49 chrX:16695340-16695420 7.31e-01 80 chrX:4208672-4208752 3.66e-02 66_[+1(5.72e-06)]_6 chrX:11924307-11924387 7.04e-01 80 chrI:9095779-9095859 1.52e-01 11_[+2(1.05e-05)]_61 chrX:17545691-17545771 6.62e-02 80 chrX:16202374-16202454 2.86e-02 12_[+3(4.30e-05)]_60 chrX:1989744-1989824 1.32e-01 80 chrIV:15059341-15059421 8.22e-01 80 chrX:3409098-3409178 3.69e-01 80 chrX:785501-785581 6.07e-01 80 chrX:8048812-8048892 3.82e-02 20_[+1(2.67e-05)]_52 chrI:9131230-9131310 9.83e-01 80 chrX:1437277-1437357 5.51e-03 17_[+1(5.72e-06)]_55 chrII:11731503-11731583 7.53e-01 80 chrI:7868997-7869077 3.09e-01 47_[+3(4.30e-05)]_25 chrM:8843-8923 9.52e-01 80 chrX:1888554-1888634 1.55e-01 80 chrV:8939800-8939880 3.14e-01 80 chrX:5106818-5106898 9.96e-01 80 chrII:5575064-5575144 1.17e-01 80 chrIII:11694666-11694746 2.09e-02 7_[+3(4.30e-05)]_65 chrV:6278455-6278535 2.11e-01 80 chrX:17288557-17288637 9.09e-01 80 chrV:5587190-5587270 3.10e-02 80 chrV:13907851-13907931 3.80e-01 80 chrM:10062-10142 1.00e+00 80 chrX:15736611-15736691 4.02e-01 80 chrI:6094570-6094650 5.50e-01 80 chrM:11422-11502 7.28e-01 80 chrX:6522906-6522986 4.69e-01 80 chrM:3585-3665 9.77e-01 80 chrX:3409337-3409417 9.15e-01 80 chrX:11522223-11522303 9.69e-01 80 chrM:4943-5023 1.00e+00 80 chrX:17181389-17181469 1.90e-01 80 chrX:1503792-1503872 9.53e-01 80 chrX:1387130-1387210 8.79e-01 80 chrIII:5506414-5506494 4.37e-01 80 chrX:10668036-10668116 7.83e-01 80 chrI:7493047-7493127 9.97e-01 80 chrX:403161-403241 9.22e-01 80 chrX:13349476-13349556 8.04e-01 80 chrX:1369808-1369888 6.10e-02 5_[+3(4.30e-05)]_67 chrM:11090-11170 9.86e-01 80 chrX:8104044-8104124 3.18e-03 14_[+1(3.82e-05)]_58 chrM:8212-8292 9.73e-01 80 chrX:13442577-13442657 3.48e-01 80 chrV:20164691-20164771 1.70e-01 80 chrX:14813508-14813588 8.42e-01 80 chrIV:12037175-12037255 8.88e-01 80 chrV:10953903-10953983 9.51e-01 80 chrI:6838182-6838262 4.59e-01 80 chrII:12994089-12994169 3.98e-01 80 chrX:14476849-14476929 1.30e-01 80 chrII:2378612-2378692 3.59e-02 65_[+2(1.05e-05)]_7 chrX:17419867-17419947 5.19e-01 80 chrX:11790731-11790811 9.40e-01 80 chrV:4823919-4823999 1.16e-01 80 chrV:5780896-5780976 3.27e-02 80 chrII:8744389-8744469 7.31e-01 80 chrI:5372413-5372493 7.76e-01 80 chrX:5354639-5354719 2.89e-01 80 chrX:6252399-6252479 9.95e-01 80 chrIII:11830652-11830732 5.86e-02 80 chrM:3031-3111 9.03e-01 80 chrII:11149900-11149980 3.81e-01 80 chrV:18573315-18573395 8.52e-02 32_[+3(4.30e-05)]_40 chrV:4190307-4190387 6.63e-01 80 chrIV:16169742-16169822 9.72e-01 80 chrII:12796170-12796250 5.68e-01 80 chrI:2869901-2869981 1.99e-01 80 chrX:4246236-4246316 3.13e-01 15_[+3(4.30e-05)]_57 chrIII:7278644-7278724 6.02e-03 20_[+1(3.82e-05)]_52 chrM:10853-10933 9.98e-01 80 chrI:7656651-7656731 1.18e-01 80 chrX:11603415-11603495 1.00e+00 80 chrII:8746481-8746561 6.74e-01 80 chrX:4395573-4395653 9.16e-04 41_[+1(5.72e-06)]_31 chrV:12004714-12004794 8.76e-01 80 chrV:12406817-12406897 9.26e-02 72_[+3(7.51e-05)] chrIII:8443701-8443781 9.47e-01 80 chrV:1158490-1158570 1.27e-01 80 chrI:6499906-6499986 6.95e-01 80 chrIV:17281622-17281702 7.72e-01 80 chrIV:8377526-8377606 8.24e-01 80 chrV:19519594-19519674 5.47e-01 80 chrX:1486400-1486480 8.66e-01 80 chrI:12956011-12956091 5.34e-01 80 chrX:2402098-2402178 7.97e-01 80 chrII:14801412-14801492 1.05e-01 80 chrIV:16170809-16170889 9.29e-04 49_[+5(2.00e-05)]_23 chrX:1909519-1909599 4.42e-02 80 chrX:16327348-16327428 8.38e-01 80 chrM:985-1065 8.72e-01 80 chrI:9096663-9096743 7.03e-01 80 chrX:1504867-1504947 5.78e-01 80 chrX:2215298-2215378 7.52e-01 80 chrV:20848043-20848123 4.50e-01 80 chrIV:11913374-11913454 8.89e-01 80 chrX:3111849-3111929 9.08e-01 80 chrII:10542866-10542946 7.21e-01 80 chrX:1010996-1011076 9.18e-01 80 chrI:9128920-9129000 1.01e-02 11_[+2(1.05e-05)]_61 chrV:727679-727759 5.63e-01 80 chrV:11572990-11573070 7.65e-01 80 chrX:7788093-7788173 1.39e-01 80 chrIII:5501792-5501872 4.48e-01 80 chrIV:9438876-9438956 8.83e-01 80 chrX:15568462-15568542 7.31e-01 80 chrX:15076142-15076222 7.53e-01 80 chrV:19521321-19521401 6.84e-01 80 chrV:8039495-8039575 2.72e-01 80 chrV:8039189-8039269 6.48e-01 80 chrX:7181761-7181841 1.15e-01 1_[+1(1.33e-05)]_71 chrIV:8949796-8949876 7.54e-01 80 chrX:16931583-16931663 7.01e-02 50_[+3(4.30e-05)]_22 chrM:7225-7305 9.97e-01 80 chrI:8868451-8868531 9.61e-01 80 chrII:2330621-2330701 3.15e-01 22_[+3(4.30e-05)]_50 chrI:2689165-2689245 6.79e-01 80 chrX:13105088-13105168 2.93e-01 80 chrX:8089579-8089659 3.19e-01 80 chrX:1323162-1323242 2.83e-02 70_[+2(1.05e-05)]_2 chrII:15229715-15229795 1.88e-02 60_[+3(4.30e-05)]_12 chrV:13986737-13986817 9.67e-01 80 chrV:13658728-13658808 7.39e-01 80 chrIV:15899444-15899524 9.69e-01 80 chrIII:13720474-13720554 7.10e-02 80 chrIII:12614736-12614816 5.88e-02 59_[+2(6.41e-05)]_13 chrIV:5083270-5083350 3.09e-01 80 chrX:4148348-4148428 9.98e-01 80 chrX:6449190-6449270 9.97e-01 80 chrIII:11922021-11922101 5.90e-01 80 chrII:6346663-6346743 9.94e-01 80 chrM:6029-6109 1.00e+00 80 chrX:15200881-15200961 8.12e-01 80 chrX:8084111-8084191 3.03e-01 80 chrX:4193271-4193351 8.91e-01 80 chrIII:11090321-11090401 5.57e-01 80 chrI:7015742-7015822 3.89e-01 80 chrIV:16168810-16168890 1.75e-01 80 chrX:16205972-16206052 6.53e-02 80 chrII:10302736-10302816 6.55e-01 80 chrIII:5942589-5942669 9.51e-01 80 chrX:14610530-14610610 3.87e-03 53_[+2(1.05e-05)]_19 chrII:3036542-3036622 1.15e-01 80 chrIII:4195515-4195595 9.39e-01 80 chrX:15842648-15842728 9.58e-01 80 chrIV:4511665-4511745 9.89e-01 80 chrM:9116-9196 9.79e-01 80 chrV:20162054-20162134 9.96e-01 80 chrIV:3313520-3313600 8.85e-02 80 chrII:2920957-2921037 3.28e-02 20_[+2(1.05e-05)]_52 chrIV:2709792-2709872 2.55e-01 80 chrV:18619290-18619370 1.00e+00 80 chrX:2971714-2971794 3.71e-02 80 chrX:6042258-6042338 5.09e-02 80 chrV:10342035-10342115 1.47e-01 12_[+3(4.30e-05)]_60 chrI:2667919-2667999 3.27e-01 80 chrI:7079368-7079448 4.82e-01 80 chrII:4902171-4902251 5.81e-01 80 chrIV:11913599-11913679 1.82e-01 80 chrIII:13763500-13763580 9.30e-01 80 chrIII:9509988-9510068 9.46e-01 80 chrIII:9824658-9824738 5.38e-01 80 chrIV:3336653-3336733 1.68e-01 80 chrIV:9530784-9530864 6.38e-01 80 chrX:8163775-8163855 3.12e-02 80 chrV:19521526-19521606 9.21e-01 80 chrIV:6329803-6329883 1.41e-01 80 chrIII:7338863-7338943 3.96e-01 80 chrX:14500773-14500853 6.05e-01 80 chrV:16593144-16593224 4.98e-01 80 chrV:1875692-1875772 9.72e-01 80 chrI:2878722-2878802 6.94e-01 80 chrIV:17470137-17470217 3.81e-01 80 chrV:14688681-14688761 5.53e-01 80 chrI:10104356-10104436 2.12e-03 29_[+5(5.70e-06)]_43 chrX:1319958-1320038 8.20e-02 80 chrX:11339516-11339596 3.35e-01 80 chrX:6735705-6735785 9.52e-01 80 chrIV:11956525-11956605 2.68e-01 80 chrM:2118-2198 5.57e-01 80 chrV:14366746-14366826 2.34e-03 63_[+2(6.41e-05)]_9 chrII:8933871-8933951 8.63e-02 80 chrIV:11183201-11183281 9.26e-01 80 chrII:11974721-11974801 9.00e-01 80 chrI:14058800-14058880 6.94e-01 80 chrX:12509525-12509605 7.13e-01 80 chrV:8936261-8936341 1.95e-03 62_[+4(4.30e-06)]_10 chrI:11584868-11584948 6.68e-01 80 chrX:14146908-14146988 8.18e-01 80 chrX:13514531-13514611 2.29e-02 26_[+1(5.72e-06)]_46 chrI:4769681-4769761 2.92e-02 80 chrV:6225988-6226068 9.86e-01 80 chrX:13358703-13358783 9.56e-02 80 chrIII:1616675-1616755 6.82e-01 80 chrIV:16167339-16167419 8.48e-01 80 chrI:1051014-1051094 7.92e-02 80 chrX:8477639-8477719 7.91e-01 80 chrV:14688441-14688521 8.44e-01 80 chrV:5271596-5271676 2.80e-01 80 chrIV:8795228-8795308 2.16e-05 50_[+5(5.70e-06)]_22 chrI:2864137-2864217 1.04e-04 4_[+2(1.05e-05)]_60_[+4(4.30e-06)] chrIV:3636655-3636735 4.69e-02 43_[+2(1.83e-05)]_29 chrIV:13388959-13389039 9.89e-01 80 chrII:11376783-11376863 5.70e-02 80 chrIV:2111308-2111388 4.40e-01 80 chrX:15725169-15725249 4.60e-02 22_[+3(7.51e-05)]_50 chrIV:11479039-11479119 9.61e-01 80 chrX:17544477-17544557 4.41e-02 40_[+1(1.33e-05)]_32 chrX:16024689-16024769 3.93e-01 80 chrIII:1419960-1420040 9.64e-02 35_[+3(7.51e-05)]_37 chrX:10332304-10332384 9.80e-01 80 chrIV:17281419-17281499 5.50e-01 80 chrV:20497736-20497816 9.33e-01 80 chrI:7084569-7084649 1.52e-01 80 chrIII:5196386-5196466 9.60e-01 80 chrV:19519795-19519875 1.42e-01 31_[+3(4.30e-05)]_41 chrIV:14033269-14033349 2.33e-01 80 chrX:1504004-1504084 8.84e-01 80 chrIV:7984115-7984195 7.41e-01 80 chrI:13351128-13351208 9.79e-01 80 chrII:5321952-5322032 5.30e-01 80 chrI:7493254-7493334 3.10e-01 3_[+3(4.30e-05)]_69 chrV:2600701-2600781 1.72e-01 80 chrX:10158886-10158966 2.19e-02 80 chrX:12452338-12452418 4.45e-03 24_[+2(3.20e-05)]_48 chrX:5653931-5654011 1.97e-01 80 chrIII:7141383-7141463 2.11e-01 51_[+3(7.51e-05)]_21 chrII:11224285-11224365 8.79e-01 80 chrV:11541517-11541597 8.05e-01 80 chrX:15709691-15709771 1.01e-01 80 chrII:4891517-4891597 8.84e-02 16_[+1(1.33e-05)]_56 chrV:6515024-6515104 7.46e-02 46_[+2(5.04e-05)]_26 chrII:2565061-2565141 2.74e-01 80 chrX:13108885-13108965 8.83e-01 80 chrX:12872407-12872487 2.93e-01 80 chrV:15187778-15187858 7.37e-01 80 chrIII:7376592-7376672 1.45e-02 59_[+3(7.51e-05)]_13 chrX:2364854-2364934 6.32e-01 80 chrIII:11918506-11918586 8.66e-02 80 chrII:11728792-11728872 6.05e-01 80 chrX:9999650-9999730 4.24e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************