******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/fos-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:3855541-3855621 1.0000 80 chrI:1911588-1911668 1.0000 80 chrII:3244989-3245069 1.0000 80 chrIV:3852499-3852579 1.0000 80 chrIV:11304595-11304675 1.0000 80 chrIV:3899985-3900065 1.0000 80 chrV:8655123-8655203 1.0000 80 chrV:9074501-9074581 1.0000 80 chrIV:3867999-3868079 1.0000 80 chrIV:6803978-6804058 1.0000 80 chrII:9501067-9501147 1.0000 80 chrI:8135055-8135135 1.0000 80 chrII:5332882-5332962 1.0000 80 chrX:6522310-6522390 1.0000 80 chrV:12004592-12004672 1.0000 80 chrIV:17245304-17245384 1.0000 80 chrII:6589540-6589620 1.0000 80 chrIII:6179147-6179227 1.0000 80 chrX:4208694-4208774 1.0000 80 chrII:2378745-2378825 1.0000 80 chrIII:600729-600809 1.0000 80 chrIV:292158-292238 1.0000 80 chrI:6294067-6294147 1.0000 80 chrX:12911886-12911966 1.0000 80 chrV:13269390-13269470 1.0000 80 chrV:18346286-18346366 1.0000 80 chrV:15497890-15497970 1.0000 80 chrV:10252662-10252742 1.0000 80 chrV:11071565-11071645 1.0000 80 chrI:5431275-5431355 1.0000 80 chrV:19158766-19158846 1.0000 80 chrIV:14594348-14594428 1.0000 80 chrV:6221299-6221379 1.0000 80 chrX:7319638-7319718 1.0000 80 chrII:6347106-6347186 1.0000 80 chrII:12768307-12768387 1.0000 80 chrII:8388365-8388445 1.0000 80 chrX:15610645-15610725 1.0000 80 chrX:8718218-8718298 1.0000 80 chrIII:6850388-6850468 1.0000 80 chrV:9343479-9343559 1.0000 80 chrV:6275414-6275494 1.0000 80 chrV:5050090-5050170 1.0000 80 chrIV:8542332-8542412 1.0000 80 chrII:3786632-3786712 1.0000 80 chrIV:8530708-8530788 1.0000 80 chrII:5337035-5337115 1.0000 80 chrX:11047370-11047450 1.0000 80 chrIV:12207937-12208017 1.0000 80 chrIII:9783242-9783322 1.0000 80 chrV:8267368-8267448 1.0000 80 chrIV:11955726-11955806 1.0000 80 chrIV:7393874-7393954 1.0000 80 chrII:9617938-9618018 1.0000 80 chrX:10479807-10479887 1.0000 80 chrX:13143854-13143934 1.0000 80 chrIV:7189056-7189136 1.0000 80 chrI:7656917-7656997 1.0000 80 chrI:10179052-10179132 1.0000 80 chrIII:4796208-4796288 1.0000 80 chrX:1454013-1454093 1.0000 80 chrIII:1279359-1279439 1.0000 80 chrI:4508520-4508600 1.0000 80 chrIV:8538186-8538266 1.0000 80 chrIV:6780003-6780083 1.0000 80 chrV:13909527-13909607 1.0000 80 chrIV:11914016-11914096 1.0000 80 chrII:8016836-8016916 1.0000 80 chrIV:3612179-3612259 1.0000 80 chrV:11889467-11889547 1.0000 80 chrX:12872455-12872535 1.0000 80 chrIII:6415513-6415593 1.0000 80 chrV:12467880-12467960 1.0000 80 chrIV:12842318-12842398 1.0000 80 chrX:3111846-3111926 1.0000 80 chrII:13298591-13298671 1.0000 80 chrI:6838186-6838266 1.0000 80 chrI:12654660-12654740 1.0000 80 chrX:12873775-12873855 1.0000 80 chrX:2698465-2698545 1.0000 80 chrV:13657249-13657329 1.0000 80 chrV:13658699-13658779 1.0000 80 chrIV:16490130-16490210 1.0000 80 chrX:11603544-11603624 1.0000 80 chrX:1454582-1454662 1.0000 80 chrV:10719814-10719894 1.0000 80 chrII:6842750-6842830 1.0000 80 chrII:2801061-2801141 1.0000 80 chrII:9603590-9603670 1.0000 80 chrV:731509-731589 1.0000 80 chrV:6614512-6614592 1.0000 80 chrI:10752130-10752210 1.0000 80 chrIV:9198226-9198306 1.0000 80 chrX:1504953-1505033 1.0000 80 chrIII:12598966-12599046 1.0000 80 chrIV:14414332-14414412 1.0000 80 chrII:5330257-5330337 1.0000 80 chrIII:6373992-6374072 1.0000 80 chrV:6228809-6228889 1.0000 80 chrII:12519010-12519090 1.0000 80 chrV:6098795-6098875 1.0000 80 chrX:7181695-7181775 1.0000 80 chrIII:13464983-13465063 1.0000 80 chrX:6744026-6744106 1.0000 80 chrIV:13919413-13919493 1.0000 80 chrX:2364856-2364936 1.0000 80 chrII:11149978-11150058 1.0000 80 chrX:6253783-6253863 1.0000 80 chrI:10777540-10777620 1.0000 80 chrIII:833743-833823 1.0000 80 chrX:14560406-14560486 1.0000 80 chrX:16192676-16192756 1.0000 80 chrI:8786983-8787063 1.0000 80 chrII:10552100-10552180 1.0000 80 chrX:15607598-15607678 1.0000 80 chrII:9284199-9284279 1.0000 80 chrIV:14822530-14822610 1.0000 80 chrX:1389489-1389569 1.0000 80 chrII:11635862-11635942 1.0000 80 chrX:17505938-17506018 1.0000 80 chrII:10542280-10542360 1.0000 80 chrX:12363173-12363253 1.0000 80 chrI:7079548-7079628 1.0000 80 chrX:13358540-13358620 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_fos-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/fos-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 124 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 9920 N= 124 sample: seed= 0 hsfrac= 0 searchsize= 9920 norand= no csites= 1000 Letter frequencies in dataset: A 0.311 C 0.198 G 0.189 T 0.302 Background letter frequencies (from file dataset with add-one prior applied): A 0.311 C 0.198 G 0.189 T 0.302 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCACGTGG MEME-1 width = 8 sites = 13 llr = 123 E-value = 3.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCACGTGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a::::2 pos.-specific C 37:a:::: probability G :3::a:97 matrix T 7::::a12 bits 2.4 ** 2.2 ** 1.9 ** * 1.7 ***** Relative 1.4 ****** Entropy 1.2 ****** (13.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCACGTGG consensus CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6850388-6850468 36 7.51e-06 TCATCATCTC TCACGTGG ACACACGTTT chrV:13658699-13658779 61 1.24e-05 TTCTCCCATA CCACGTGG TGTTTCAGAC chrX:12872455-12872535 65 1.24e-05 CAACTGGGGG CCACGTGG GGGCCCCC chrIV:292158-292238 10 1.24e-05 AAAGTAGTA CCACGTGG TTCACAGAAA chrV:6275414-6275494 23 1.96e-05 ATAATAACTA TGACGTGG TAAGGAATCA chrV:9343479-9343559 54 1.96e-05 TGAGCGAGAA TGACGTGG TCCACAGCTA chrV:19158766-19158846 60 1.96e-05 TCATTTTTGG TGACGTGG CAATGTTTAT chrIV:6780003-6780083 72 2.43e-05 TAACTGAAAA CGACGTGG A chrX:6744026-6744106 10 3.63e-05 ACATGTTGA TCACGTGT CGCCGATCAG chrX:7319638-7319718 70 3.63e-05 GCAATAACAG TCACGTGT ACA chrIV:9198226-9198306 71 4.86e-05 GAAGGTCAAA TCACGTGA AG chrI:6294067-6294147 54 4.86e-05 TGCAGAAAAT TCACGTGA ACAACTCCAA chrIV:14414332-14414412 5 9.98e-05 CAAA TCACGTTG TGTGTGTCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6850388-6850468 7.5e-06 35_[+1]_37 chrV:13658699-13658779 1.2e-05 60_[+1]_12 chrX:12872455-12872535 1.2e-05 64_[+1]_8 chrIV:292158-292238 1.2e-05 9_[+1]_63 chrV:6275414-6275494 2e-05 22_[+1]_50 chrV:9343479-9343559 2e-05 53_[+1]_19 chrV:19158766-19158846 2e-05 59_[+1]_13 chrIV:6780003-6780083 2.4e-05 71_[+1]_1 chrX:6744026-6744106 3.6e-05 9_[+1]_63 chrX:7319638-7319718 3.6e-05 69_[+1]_3 chrIV:9198226-9198306 4.9e-05 70_[+1]_2 chrI:6294067-6294147 4.9e-05 53_[+1]_19 chrIV:14414332-14414412 0.0001 4_[+1]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCACGTGG width=8 seqs=13 chrIII:6850388-6850468 ( 36) TCACGTGG 1 chrV:13658699-13658779 ( 61) CCACGTGG 1 chrX:12872455-12872535 ( 65) CCACGTGG 1 chrIV:292158-292238 ( 10) CCACGTGG 1 chrV:6275414-6275494 ( 23) TGACGTGG 1 chrV:9343479-9343559 ( 54) TGACGTGG 1 chrV:19158766-19158846 ( 60) TGACGTGG 1 chrIV:6780003-6780083 ( 72) CGACGTGG 1 chrX:6744026-6744106 ( 10) TCACGTGT 1 chrX:7319638-7319718 ( 70) TCACGTGT 1 chrIV:9198226-9198306 ( 71) TCACGTGA 1 chrI:6294067-6294147 ( 54) TCACGTGA 1 chrIV:14414332-14414412 ( 5) TCACGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 9052 bayes= 9.97266 E= 3.1e+001 -1035 64 -1035 120 -1035 181 70 -1035 168 -1035 -1035 -1035 -1035 234 -1035 -1035 -1035 -1035 240 -1035 -1035 -1035 -1035 173 -1035 -1035 229 -197 -102 -1035 187 -97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 3.1e+001 0.000000 0.307692 0.000000 0.692308 0.000000 0.692308 0.307692 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.923077 0.076923 0.153846 0.000000 0.692308 0.153846 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGG MEME-1 regular expression -------------------------------------------------------------------------------- [TC][CG]ACGTGG -------------------------------------------------------------------------------- Time 1.86 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTGCNTC MEME-2 width = 8 sites = 16 llr = 138 E-value = 5.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTGCNTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::3:: pos.-specific C :a1372:a probability G :::8:3:: matrix T a:9:33a: bits 2.4 * * 2.2 * * 1.9 * * 1.7 ** * ** Relative 1.4 **** ** Entropy 1.2 ***** ** (12.5 bits) 1.0 ***** ** 0.7 ***** ** 0.5 ***** ** 0.2 ***** ** 0.0 -------- Multilevel TCTGCGTC consensus CTA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCNTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:5330257-5330337 10 7.64e-06 CTCGTGCTC TCTGCGTC TCCTCGATGA chrIV:14414332-14414412 19 7.64e-06 GTTGTGTGTG TCTGCGTC TCTTCACTTT chrX:1454582-1454662 22 7.64e-06 CAACGCCGCC TCTGCGTC TCTTCCCGCT chrII:8016836-8016916 8 7.64e-06 GATCATG TCTGCGTC TCATCGGGAA chrV:15497890-15497970 29 7.64e-06 CGTCGTATGC TCTGCGTC TCTCCATGTA chrV:12467880-12467960 60 4.04e-05 GTGCTCCTTC TCTGCTTC AGTTCGCCGT chrX:16192676-16192756 16 6.84e-05 CTACGCACGC TCTCCCTC GCAAAAATGT chrX:17505938-17506018 33 9.44e-05 TCGGGGGTCC TCTCCTTC GGCGGCGGCG chrI:4508520-4508600 59 9.44e-05 TGGGTAACCA TCTCCATC TCGTCCTGGT chrII:3244989-3245069 32 9.44e-05 AATGAGCAGT TCTCCATC ACCGACATCC chrI:10752130-10752210 59 1.07e-04 ACAGAGtctc tctgtctc tctctctctg chrIV:17245304-17245384 68 1.07e-04 TTTTACCTTT TCTGTCTC CATTC chrI:8786983-8787063 43 1.44e-04 GGCGTGTTTT TCTGTTTC TCTCTATCCG chrIII:4796208-4796288 9 1.44e-04 GAGTTTTT TCTGTATC ACTGTCTGCG chrIV:3867999-3868079 25 1.44e-04 TTTAAATTGT TCTGTTTC AAGATCAAAT chrX:12872455-12872535 8 2.35e-04 ctctttc tccgcatc tctctGCAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCNTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:5330257-5330337 7.6e-06 9_[+2]_63 chrIV:14414332-14414412 7.6e-06 18_[+2]_54 chrX:1454582-1454662 7.6e-06 21_[+2]_51 chrII:8016836-8016916 7.6e-06 7_[+2]_65 chrV:15497890-15497970 7.6e-06 28_[+2]_44 chrV:12467880-12467960 4e-05 59_[+2]_13 chrX:16192676-16192756 6.8e-05 15_[+2]_57 chrX:17505938-17506018 9.4e-05 32_[+2]_40 chrI:4508520-4508600 9.4e-05 58_[+2]_14 chrII:3244989-3245069 9.4e-05 31_[+2]_41 chrI:10752130-10752210 0.00011 58_[+2]_14 chrIV:17245304-17245384 0.00011 67_[+2]_5 chrI:8786983-8787063 0.00014 42_[+2]_30 chrIII:4796208-4796288 0.00014 8_[+2]_64 chrIV:3867999-3868079 0.00014 24_[+2]_48 chrX:12872455-12872535 0.00024 7_[+2]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCNTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTGCNTC width=8 seqs=16 chrII:5330257-5330337 ( 10) TCTGCGTC 1 chrIV:14414332-14414412 ( 19) TCTGCGTC 1 chrX:1454582-1454662 ( 22) TCTGCGTC 1 chrII:8016836-8016916 ( 8) TCTGCGTC 1 chrV:15497890-15497970 ( 29) TCTGCGTC 1 chrV:12467880-12467960 ( 60) TCTGCTTC 1 chrX:16192676-16192756 ( 16) TCTCCCTC 1 chrX:17505938-17506018 ( 33) TCTCCTTC 1 chrI:4508520-4508600 ( 59) TCTCCATC 1 chrII:3244989-3245069 ( 32) TCTCCATC 1 chrI:10752130-10752210 ( 59) TCTGTCTC 1 chrIV:17245304-17245384 ( 68) TCTGTCTC 1 chrI:8786983-8787063 ( 43) TCTGTTTC 1 chrIII:4796208-4796288 ( 9) TCTGTATC 1 chrIV:3867999-3868079 ( 25) TCTGTTTC 1 chrX:12872455-12872535 ( 8) TCCGCATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCNTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 9052 bayes= 10.4649 E= 5.7e+002 -1064 -1064 -1064 173 -1064 234 -1064 -1064 -1064 -166 -1064 163 -1064 34 199 -1064 -1064 180 -1064 5 -32 -8 73 -27 -1064 -1064 -1064 173 -1064 234 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCNTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 5.7e+002 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.062500 0.000000 0.937500 0.000000 0.250000 0.750000 0.000000 0.000000 0.687500 0.000000 0.312500 0.250000 0.187500 0.312500 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCNTC MEME-2 regular expression -------------------------------------------------------------------------------- TCT[GC][CT][GAT]TC -------------------------------------------------------------------------------- Time 3.17 secs. ******************************************************************************** ******************************************************************************** MOTIF GRGAGAAA MEME-3 width = 8 sites = 32 llr = 243 E-value = 5.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRGAGAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :5:92777 pos.-specific C :::1:3:: probability G a3a:8:33 matrix T :2:::::: bits 2.4 * * 2.2 * * 1.9 * * 1.7 * * Relative 1.4 * * * Entropy 1.2 * *** (11.0 bits) 1.0 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAAA consensus G ACGG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGAGAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:731509-731589 2 1.96e-05 C GAGAGAAA GAGCGTGATA chrII:9603590-9603670 14 1.96e-05 TTTCATTTTT GAGAGAAA AGACAGTGTA chrIV:6780003-6780083 32 1.96e-05 TGTGATCGGG GAGAGAAA AAGCTCAGGA chrX:12873775-12873855 19 3.16e-05 ATTCCACGAA GGGAGAAA GCGGAAACCG chrI:10179052-10179132 60 4.41e-05 GCTCCATCTG GAGAGCAA ACTCTTACCG chrII:9617938-9618018 62 4.41e-05 CGAGCCCAAT GAGAGCAA GGCATTGTTT chrII:11635862-11635942 40 7.56e-05 GAGAGAGTGT GAGAGAGA AGTCAGCTCA chrII:13298591-13298671 4 7.56e-05 gca gagagaag ttagagGAAA chrX:1454582-1454662 65 9.01e-05 CGAGAGGAAT GGGAGAAG CGCGAGTG chrII:10552100-10552180 37 1.24e-04 GTGGTCAGTA GAGAGCGA TGGTGGCCGA chrIV:9198226-9198306 21 1.24e-04 GTGTCGGAGA GTGAGAAA TAACGAAAAA chrIV:7393874-7393954 15 1.24e-04 CACAAGGATA GTGAGAAA CGAGTGGTAA chrII:5337035-5337115 65 1.24e-04 AGAGAAATAA GAGAGCAG AAAAACAC chrII:12519010-12519090 52 1.34e-04 CTATAAAACT GGGAGCGA TGGCGCTGAG chrII:2801061-2801141 27 1.41e-04 TAGAGATACA GAGAGAGG GGGGGGGGTA chrIII:6373992-6374072 13 1.57e-04 AGTGCTAAAT GTGAGCAA AAGACAACGT chrX:1454013-1454093 48 1.57e-04 CTGCATAAGG GTGAGCAA GCGCTATGGG chrV:6221299-6221379 50 1.57e-04 TGGGGGGAAA GGGAGAGG TCGAATAATC chrX:1389489-1389569 41 1.85e-04 GTAATATCAT GTGAGAGA CTTTATTATA chrIV:16490130-16490210 21 1.85e-04 agagaacaca gagagcgg agaCATCGAT chrX:15610645-15610725 25 2.15e-04 TCATTGAAAA GTGAGCAG AATTCATTGC chrX:14560406-14560486 21 2.23e-04 AAAGAGTGAC GGGCGAAA AGTAAAGTGC chrV:18346286-18346366 4 2.23e-04 TAA GGGCGAAA GTGATAAGGG chrIII:12598966-12599046 3 2.70e-04 TG GAGAAAAA ACCAAATTTt chrII:6347106-6347186 9 2.70e-04 CGTCATAC GAGAAAAA TGAGAAGAAA chrX:6253783-6253863 51 2.95e-04 TTTATAGTTG GGGAAAAA TTACACCGAA chrI:6838186-6838266 49 2.95e-04 ATTTCAAGCA GGGAAAAA CAAATTTTAA chrV:9343479-9343559 45 3.14e-04 ATCCGATGAT GAGCGAGA ATGACGTGGT chrX:17505938-17506018 57 3.44e-04 GGCGAAAAAT GGGCGAGA GAATGGAGAG chrV:10719814-10719894 53 4.18e-04 TCCCCagaat gagaaaag ggaggagaga chrX:6744026-6744106 27 5.19e-04 TCGCCGATCA GTGAAAAA GAATCGTCGG chrI:12654660-12654740 46 5.19e-04 GAAAGCAGAC GAGAACAG TTAATTGTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGAGAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:731509-731589 2e-05 1_[+3]_71 chrII:9603590-9603670 2e-05 13_[+3]_59 chrIV:6780003-6780083 2e-05 31_[+3]_41 chrX:12873775-12873855 3.2e-05 18_[+3]_54 chrI:10179052-10179132 4.4e-05 59_[+3]_13 chrII:9617938-9618018 4.4e-05 61_[+3]_11 chrII:11635862-11635942 7.6e-05 39_[+3]_33 chrII:13298591-13298671 7.6e-05 3_[+3]_69 chrX:1454582-1454662 9e-05 64_[+3]_8 chrII:10552100-10552180 0.00012 36_[+3]_36 chrIV:9198226-9198306 0.00012 20_[+3]_52 chrIV:7393874-7393954 0.00012 14_[+3]_58 chrII:5337035-5337115 0.00012 64_[+3]_8 chrII:12519010-12519090 0.00013 51_[+3]_21 chrII:2801061-2801141 0.00014 26_[+3]_46 chrIII:6373992-6374072 0.00016 12_[+3]_60 chrX:1454013-1454093 0.00016 47_[+3]_25 chrV:6221299-6221379 0.00016 49_[+3]_23 chrX:1389489-1389569 0.00019 40_[+3]_32 chrIV:16490130-16490210 0.00019 20_[+3]_52 chrX:15610645-15610725 0.00022 24_[+3]_48 chrX:14560406-14560486 0.00022 20_[+3]_52 chrV:18346286-18346366 0.00022 3_[+3]_69 chrIII:12598966-12599046 0.00027 2_[+3]_70 chrII:6347106-6347186 0.00027 8_[+3]_64 chrX:6253783-6253863 0.00029 50_[+3]_22 chrI:6838186-6838266 0.00029 48_[+3]_24 chrV:9343479-9343559 0.00031 44_[+3]_28 chrX:17505938-17506018 0.00034 56_[+3]_16 chrV:10719814-10719894 0.00042 52_[+3]_20 chrX:6744026-6744106 0.00052 26_[+3]_46 chrI:12654660-12654740 0.00052 45_[+3]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGAGAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRGAGAAA width=8 seqs=32 chrV:731509-731589 ( 2) GAGAGAAA 1 chrII:9603590-9603670 ( 14) GAGAGAAA 1 chrIV:6780003-6780083 ( 32) GAGAGAAA 1 chrX:12873775-12873855 ( 19) GGGAGAAA 1 chrI:10179052-10179132 ( 60) GAGAGCAA 1 chrII:9617938-9618018 ( 62) GAGAGCAA 1 chrII:11635862-11635942 ( 40) GAGAGAGA 1 chrII:13298591-13298671 ( 4) GAGAGAAG 1 chrX:1454582-1454662 ( 65) GGGAGAAG 1 chrII:10552100-10552180 ( 37) GAGAGCGA 1 chrIV:9198226-9198306 ( 21) GTGAGAAA 1 chrIV:7393874-7393954 ( 15) GTGAGAAA 1 chrII:5337035-5337115 ( 65) GAGAGCAG 1 chrII:12519010-12519090 ( 52) GGGAGCGA 1 chrII:2801061-2801141 ( 27) GAGAGAGG 1 chrIII:6373992-6374072 ( 13) GTGAGCAA 1 chrX:1454013-1454093 ( 48) GTGAGCAA 1 chrV:6221299-6221379 ( 50) GGGAGAGG 1 chrX:1389489-1389569 ( 41) GTGAGAGA 1 chrIV:16490130-16490210 ( 21) GAGAGCGG 1 chrX:15610645-15610725 ( 25) GTGAGCAG 1 chrX:14560406-14560486 ( 21) GGGCGAAA 1 chrV:18346286-18346366 ( 4) GGGCGAAA 1 chrIII:12598966-12599046 ( 3) GAGAAAAA 1 chrII:6347106-6347186 ( 9) GAGAAAAA 1 chrX:6253783-6253863 ( 51) GGGAAAAA 1 chrI:6838186-6838266 ( 49) GGGAAAAA 1 chrV:9343479-9343559 ( 45) GAGCGAGA 1 chrX:17505938-17506018 ( 57) GGGCGAGA 1 chrV:10719814-10719894 ( 53) GAGAAAAG 1 chrX:6744026-6744106 ( 27) GTGAAAAA 1 chrI:12654660-12654740 ( 46) GAGAACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGAGAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 9052 bayes= 9.46391 E= 5.5e+000 -1164 -1164 240 -1164 68 -1164 57 -47 -1164 -1164 240 -1164 149 -66 -1164 -1164 -51 -1164 205 -1164 114 66 -1164 -1164 121 -1164 57 -1164 121 -1164 57 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGAGAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 5.5e+000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.281250 0.218750 0.000000 0.000000 1.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.218750 0.000000 0.781250 0.000000 0.687500 0.312500 0.000000 0.000000 0.718750 0.000000 0.281250 0.000000 0.718750 0.000000 0.281250 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGAGAAA MEME-3 regular expression -------------------------------------------------------------------------------- G[AGT]GA[GA][AC][AG][AG] -------------------------------------------------------------------------------- Time 4.47 secs. ******************************************************************************** ******************************************************************************** MOTIF YYTTATCA MEME-4 width = 8 sites = 24 llr = 194 E-value = 3.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YYTTATCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::8::9 pos.-specific C 46::::a: probability G :::::::: matrix T 54aa3a:1 bits 2.4 * 2.2 * 1.9 * 1.7 ** ** Relative 1.4 ** ** Entropy 1.2 *** *** (11.6 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTTATCA consensus CT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTTATCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16192676-16192756 49 2.07e-05 TTATCAGCTT CCTTATCA CTCAATGAGC chrV:12467880-12467960 3 2.07e-05 CT CCTTATCA TAGACTTGTC chrII:3786632-3786712 51 2.07e-05 AATTCATTAC CCTTATCA CACACATACG chrIV:3899985-3900065 34 2.07e-05 TCATAACACT CCTTATCA GAATTGCTTC chrII:9284199-9284279 11 5.22e-05 TCATCATTTC TCTTATCA AAAGGGTCTC chrIV:14414332-14414412 61 5.22e-05 AATTTTCTTA TCTTATCA CTTATCGTCT chrX:11047370-11047450 33 5.22e-05 AACTTGAGTT TCTTATCA ACACTTTATT chrIV:8542332-8542412 67 5.22e-05 ATAATTCTAG TCTTATCA AAAAAA chrI:6294067-6294147 1 5.22e-05 . TCTTATCA AAAGCTACAG chrIII:600729-600809 71 5.22e-05 AAGCAGTGTT TCTTATCA AC chrII:9501067-9501147 43 5.22e-05 GCGCCGACGT TCTTATCA AACCGCTGGC chrX:15610645-15610725 10 8.38e-05 AGATAAGAA CTTTATCA TTGAAAAGTG chrII:2378745-2378825 38 8.38e-05 CGCACGGGCT CTTTATCA CCAACACTTT chrV:8267368-8267448 28 1.04e-04 TCAATTTCCC CCTTTTCA ATTCTGGTTT chrIV:14594348-14594428 57 1.52e-04 TTCTTCACTG TTTTATCA CACAATGGAG chrI:5431275-5431355 40 1.52e-04 TCCCGCCTCT TTTTATCA CCAGAATCTC chrX:2698465-2698545 69 2.13e-04 GCCATTAAAA CTTTTTCA ATAC chrV:9074501-9074581 55 2.13e-04 AATGATGGAA CTTTTTCA AGTATAAACT chrV:6614512-6614592 61 2.60e-04 GTACCGCAAA TTTTTTCA ATTTTAATCC chrX:12873775-12873855 47 2.60e-04 AAGCACATTC TTTTTTCA CCTGTTGCTC chrIV:6803978-6804058 29 2.60e-04 TCCACAGATT TTTTTTCA GGAATTGGTG chrIV:17245304-17245384 18 2.80e-04 TAGTATATCA GCTTATCA GTTGACTCCG chrX:12911886-12911966 26 3.00e-04 AAATCATGGA CCTTATCT AATCAGTCGA chrIV:8538186-8538266 2 3.30e-04 A TCTTATCT GTAGCACAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTTATCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16192676-16192756 2.1e-05 48_[+4]_24 chrV:12467880-12467960 2.1e-05 2_[+4]_70 chrII:3786632-3786712 2.1e-05 50_[+4]_22 chrIV:3899985-3900065 2.1e-05 33_[+4]_39 chrII:9284199-9284279 5.2e-05 10_[+4]_62 chrIV:14414332-14414412 5.2e-05 60_[+4]_12 chrX:11047370-11047450 5.2e-05 32_[+4]_40 chrIV:8542332-8542412 5.2e-05 66_[+4]_6 chrI:6294067-6294147 5.2e-05 [+4]_72 chrIII:600729-600809 5.2e-05 70_[+4]_2 chrII:9501067-9501147 5.2e-05 42_[+4]_30 chrX:15610645-15610725 8.4e-05 9_[+4]_63 chrII:2378745-2378825 8.4e-05 37_[+4]_35 chrV:8267368-8267448 0.0001 27_[+4]_45 chrIV:14594348-14594428 0.00015 56_[+4]_16 chrI:5431275-5431355 0.00015 39_[+4]_33 chrX:2698465-2698545 0.00021 68_[+4]_4 chrV:9074501-9074581 0.00021 54_[+4]_18 chrV:6614512-6614592 0.00026 60_[+4]_12 chrX:12873775-12873855 0.00026 46_[+4]_26 chrIV:6803978-6804058 0.00026 28_[+4]_44 chrIV:17245304-17245384 0.00028 17_[+4]_55 chrX:12911886-12911966 0.0003 25_[+4]_47 chrIV:8538186-8538266 0.00033 1_[+4]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTTATCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YYTTATCA width=8 seqs=24 chrX:16192676-16192756 ( 49) CCTTATCA 1 chrV:12467880-12467960 ( 3) CCTTATCA 1 chrII:3786632-3786712 ( 51) CCTTATCA 1 chrIV:3899985-3900065 ( 34) CCTTATCA 1 chrII:9284199-9284279 ( 11) TCTTATCA 1 chrIV:14414332-14414412 ( 61) TCTTATCA 1 chrX:11047370-11047450 ( 33) TCTTATCA 1 chrIV:8542332-8542412 ( 67) TCTTATCA 1 chrI:6294067-6294147 ( 1) TCTTATCA 1 chrIII:600729-600809 ( 71) TCTTATCA 1 chrII:9501067-9501147 ( 43) TCTTATCA 1 chrX:15610645-15610725 ( 10) CTTTATCA 1 chrII:2378745-2378825 ( 38) CTTTATCA 1 chrV:8267368-8267448 ( 28) CCTTTTCA 1 chrIV:14594348-14594428 ( 57) TTTTATCA 1 chrI:5431275-5431355 ( 40) TTTTATCA 1 chrX:2698465-2698545 ( 69) CTTTTTCA 1 chrV:9074501-9074581 ( 55) CTTTTTCA 1 chrV:6614512-6614592 ( 61) TTTTTTCA 1 chrX:12873775-12873855 ( 47) TTTTTTCA 1 chrIV:6803978-6804058 ( 29) TTTTTTCA 1 chrIV:17245304-17245384 ( 18) GCTTATCA 1 chrX:12911886-12911966 ( 26) CCTTATCT 1 chrIV:8538186-8538266 ( 2) TCTTATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTTATCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 9052 bayes= 9.65681 E= 3.9e+001 -1123 108 -218 84 -1123 166 -1123 31 -1123 -1123 -1123 173 -1123 -1123 -1123 173 127 -1123 -1123 -27 -1123 -1123 -1123 173 -1123 234 -1123 -1123 156 -1123 -1123 -186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTTATCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 3.9e+001 0.000000 0.416667 0.041667 0.541667 0.000000 0.625000 0.000000 0.375000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.000000 0.000000 0.083333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTTATCA MEME-4 regular expression -------------------------------------------------------------------------------- [TC][CT]TT[AT]TCA -------------------------------------------------------------------------------- Time 5.74 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGTCGGC MEME-5 width = 8 sites = 2 llr = 25 E-value = 4.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGTCGGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:::a::a probability G :aa::aa: matrix T :::a:::: bits 2.4 *** **** 2.2 *** **** 1.9 *** **** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGTCGGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCGGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:833743-833823 43 2.99e-06 TCGGCTGTGT CGGTCGGC GCACGCTCAC chrII:6842750-6842830 48 2.99e-06 AGCCAGCCAA CGGTCGGC CGCCCTCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCGGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:833743-833823 3e-06 42_[+5]_30 chrII:6842750-6842830 3e-06 47_[+5]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCGGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGTCGGC width=8 seqs=2 chrIII:833743-833823 ( 43) CGGTCGGC 1 chrII:6842750-6842830 ( 48) CGGTCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCGGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 9052 bayes= 12.1437 E= 4.1e+003 -765 233 -765 -765 -765 -765 240 -765 -765 -765 240 -765 -765 -765 -765 172 -765 233 -765 -765 -765 -765 240 -765 -765 -765 240 -765 -765 233 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCGGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.1e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCGGC MEME-5 regular expression -------------------------------------------------------------------------------- CGGTCGGC -------------------------------------------------------------------------------- Time 9.52 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:3855541-3855621 8.53e-01 80 chrI:1911588-1911668 8.04e-01 80 chrII:3244989-3245069 9.58e-02 31_[+2(9.44e-05)]_41 chrIV:3852499-3852579 6.57e-01 80 chrIV:11304595-11304675 1.20e-01 80 chrIV:3899985-3900065 1.18e-01 33_[+4(2.07e-05)]_39 chrV:8655123-8655203 2.76e-01 80 chrV:9074501-9074581 3.20e-01 80 chrIV:3867999-3868079 2.54e-01 80 chrIV:6803978-6804058 2.81e-01 80 chrII:9501067-9501147 3.52e-02 42_[+4(5.22e-05)]_30 chrI:8135055-8135135 8.04e-01 80 chrII:5332882-5332962 1.31e-02 80 chrX:6522310-6522390 3.24e-01 80 chrV:12004592-12004672 9.97e-01 80 chrIV:17245304-17245384 9.16e-03 80 chrII:6589540-6589620 4.61e-01 80 chrIII:6179147-6179227 2.96e-02 80 chrX:4208694-4208774 8.67e-01 80 chrII:2378745-2378825 6.13e-02 37_[+4(8.38e-05)]_35 chrIII:600729-600809 1.19e-01 70_[+4(5.22e-05)]_2 chrIV:292158-292238 1.56e-02 9_[+1(1.24e-05)]_63 chrI:6294067-6294147 2.81e-04 [+4(5.22e-05)]_45_[+1(4.86e-05)]_19 chrX:12911886-12911966 4.51e-02 80 chrV:13269390-13269470 9.80e-01 80 chrV:18346286-18346366 3.11e-01 80 chrV:15497890-15497970 1.84e-02 28_[+2(7.64e-06)]_18_[+2(7.64e-06)]_\ 18 chrV:10252662-10252742 3.39e-01 80 chrV:11071565-11071645 2.39e-01 80 chrI:5431275-5431355 3.60e-02 80 chrV:19158766-19158846 8.86e-02 59_[+1(1.96e-05)]_13 chrIV:14594348-14594428 1.66e-01 80 chrV:6221299-6221379 2.07e-01 80 chrX:7319638-7319718 4.91e-02 69_[+1(3.63e-05)]_3 chrII:6347106-6347186 4.18e-01 80 chrII:12768307-12768387 1.00e+00 80 chrII:8388365-8388445 2.69e-01 80 chrX:15610645-15610725 2.41e-02 9_[+4(8.38e-05)]_63 chrX:8718218-8718298 4.97e-01 80 chrIII:6850388-6850468 2.99e-03 35_[+1(7.51e-06)]_37 chrV:9343479-9343559 1.01e-02 53_[+1(1.96e-05)]_19 chrV:6275414-6275494 1.64e-01 22_[+1(1.96e-05)]_50 chrV:5050090-5050170 3.27e-01 80 chrIV:8542332-8542412 9.55e-03 66_[+4(5.22e-05)]_6 chrII:3786632-3786712 1.86e-01 50_[+4(2.07e-05)]_11_[+4(2.07e-05)]_\ 3 chrIV:8530708-8530788 3.12e-01 80 chrII:5337035-5337115 2.06e-01 80 chrX:11047370-11047450 9.02e-02 32_[+4(5.22e-05)]_40 chrIV:12207937-12208017 2.12e-01 80 chrIII:9783242-9783322 8.79e-01 80 chrV:8267368-8267448 1.20e-01 80 chrIV:11955726-11955806 1.76e-01 80 chrIV:7393874-7393954 9.53e-02 80 chrII:9617938-9618018 1.90e-01 61_[+3(4.41e-05)]_11 chrX:10479807-10479887 1.18e-01 80 chrX:13143854-13143934 9.88e-01 80 chrIV:7189056-7189136 3.25e-01 80 chrI:7656917-7656997 9.87e-01 80 chrI:10179052-10179132 4.03e-02 59_[+3(4.41e-05)]_13 chrIII:4796208-4796288 5.64e-03 80 chrX:1454013-1454093 8.11e-02 80 chrIII:1279359-1279439 3.77e-01 80 chrI:4508520-4508600 1.00e-01 58_[+2(9.44e-05)]_14 chrIV:8538186-8538266 1.90e-01 80 chrIV:6780003-6780083 1.10e-03 31_[+3(1.96e-05)]_32_[+1(2.43e-05)]_\ 1 chrV:13909527-13909607 5.80e-01 80 chrIV:11914016-11914096 1.26e-02 80 chrII:8016836-8016916 2.26e-03 7_[+2(7.64e-06)]_65 chrIV:3612179-3612259 6.20e-01 80 chrV:11889467-11889547 6.32e-01 80 chrX:12872455-12872535 8.16e-04 64_[+1(1.24e-05)]_8 chrIII:6415513-6415593 7.63e-01 80 chrV:12467880-12467960 1.08e-03 2_[+4(2.07e-05)]_49_[+2(4.04e-05)]_\ 13 chrIV:12842318-12842398 9.42e-01 80 chrX:3111846-3111926 5.47e-01 80 chrII:13298591-13298671 4.69e-02 3_[+3(7.56e-05)]_69 chrI:6838186-6838266 7.48e-02 80 chrI:12654660-12654740 3.29e-01 80 chrX:12873775-12873855 2.71e-03 18_[+3(3.16e-05)]_54 chrX:2698465-2698545 2.17e-01 80 chrV:13657249-13657329 9.16e-01 80 chrV:13658699-13658779 1.26e-02 60_[+1(1.24e-05)]_12 chrIV:16490130-16490210 3.40e-01 80 chrX:11603544-11603624 2.49e-01 80 chrX:1454582-1454662 2.65e-03 21_[+2(7.64e-06)]_35_[+3(9.01e-05)]_\ 8 chrV:10719814-10719894 6.86e-02 80 chrII:6842750-6842830 3.30e-03 47_[+5(2.99e-06)]_25 chrII:2801061-2801141 1.13e-01 80 chrII:9603590-9603670 2.14e-02 13_[+3(1.96e-05)]_59 chrV:731509-731589 1.26e-02 1_[+3(1.96e-05)]_71 chrV:6614512-6614592 3.52e-01 80 chrI:10752130-10752210 2.06e-02 80 chrIV:9198226-9198306 7.53e-04 70_[+1(4.86e-05)]_2 chrX:1504953-1505033 4.54e-01 80 chrIII:12598966-12599046 1.89e-01 80 chrIV:14414332-14414412 5.23e-05 4_[+1(9.98e-05)]_6_[+2(7.64e-06)]_\ 34_[+4(5.22e-05)]_12 chrII:5330257-5330337 3.31e-02 9_[+2(7.64e-06)]_63 chrIII:6373992-6374072 1.40e-01 80 chrV:6228809-6228889 3.96e-01 80 chrII:12519010-12519090 7.69e-02 80 chrV:6098795-6098875 6.24e-01 80 chrX:7181695-7181775 2.80e-01 80 chrIII:13464983-13465063 7.62e-01 80 chrX:6744026-6744106 2.90e-03 9_[+1(3.63e-05)]_63 chrIV:13919413-13919493 8.20e-01 80 chrX:2364856-2364936 6.25e-01 80 chrII:11149978-11150058 3.15e-01 80 chrX:6253783-6253863 4.65e-01 80 chrI:10777540-10777620 4.29e-01 80 chrIII:833743-833823 1.16e-03 29_[+5(4.63e-05)]_5_[+5(2.99e-06)]_\ 30 chrX:14560406-14560486 2.27e-02 80 chrX:16192676-16192756 1.98e-03 15_[+2(6.84e-05)]_13_[+4(2.07e-05)]_\ 4_[+4(2.07e-05)]_24 chrI:8786983-8787063 1.44e-02 80 chrII:10552100-10552180 2.20e-01 80 chrX:15607598-15607678 6.72e-01 80 chrII:9284199-9284279 3.71e-03 10_[+4(5.22e-05)]_62 chrIV:14822530-14822610 8.80e-01 80 chrX:1389489-1389569 8.48e-02 80 chrII:11635862-11635942 9.69e-02 27_[+3(7.56e-05)]_4_[+3(7.56e-05)]_\ 33 chrX:17505938-17506018 3.37e-03 32_[+2(9.44e-05)]_40 chrII:10542280-10542360 8.00e-02 80 chrX:12363173-12363253 3.85e-03 80 chrI:7079548-7079628 3.02e-01 80 chrX:13358540-13358620 3.31e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************