******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/flh-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:164-244 1.0000 80 chrM:9899-9979 1.0000 80 chrM:4947-5027 1.0000 80 chrM:5147-5227 1.0000 80 chrM:5952-6032 1.0000 80 chrM:9123-9203 1.0000 80 chrM:2104-2184 1.0000 80 chrIV:2998781-2998861 1.0000 80 chrII:4130431-4130511 1.0000 80 chrV:13393516-13393596 1.0000 80 chrX:16944173-16944253 1.0000 80 chrIII:3499992-3500072 1.0000 80 chrI:1575697-1575777 1.0000 80 chrX:8156097-8156177 1.0000 80 chrI:1069270-1069350 1.0000 80 chrIII:1824644-1824724 1.0000 80 chrII:15264657-15264737 1.0000 80 chrIII:4948780-4948860 1.0000 80 chrII:7001564-7001644 1.0000 80 chrIII:7642158-7642238 1.0000 80 chrI:933432-933512 1.0000 80 chrX:5818330-5818410 1.0000 80 chrX:2879854-2879934 1.0000 80 chrV:12633193-12633273 1.0000 80 chrI:11584812-11584892 1.0000 80 chrI:6136561-6136641 1.0000 80 chrIII:445751-445831 1.0000 80 chrX:15275242-15275322 1.0000 80 chrX:3994603-3994683 1.0000 80 chrV:14855766-14855846 1.0000 80 chrIV:3854812-3854892 1.0000 80 chrII:7708717-7708797 1.0000 80 chrX:14115675-14115755 1.0000 80 chrV:3587813-3587893 1.0000 80 chrX:5056378-5056458 1.0000 80 chrV:20241402-20241482 1.0000 80 chrX:7562674-7562754 1.0000 80 chrV:16622054-16622134 1.0000 80 chrII:10549374-10549454 1.0000 80 chrIV:175827-175907 1.0000 80 chrIII:3664419-3664499 1.0000 80 chrIV:1388204-1388284 1.0000 80 chrIII:13717748-13717828 1.0000 80 chrI:5316176-5316256 1.0000 80 chrIII:8650439-8650519 1.0000 80 chrIV:14013863-14013943 1.0000 80 chrI:12229303-12229383 1.0000 80 chrX:12890274-12890354 1.0000 80 chrI:13310295-13310375 1.0000 80 chrV:16700017-16700097 1.0000 80 chrI:2155489-2155569 1.0000 80 chrV:7230991-7231071 1.0000 80 chrIII:3916788-3916868 1.0000 80 chrX:14804905-14804985 1.0000 80 chrIII:3249158-3249238 1.0000 80 chrI:13417394-13417474 1.0000 80 chrII:14248231-14248311 1.0000 80 chrIV:16388352-16388432 1.0000 80 chrIV:16382353-16382433 1.0000 80 chrII:5293380-5293460 1.0000 80 chrI:12065823-12065903 1.0000 80 chrIV:9191322-9191402 1.0000 80 chrI:9605742-9605822 1.0000 80 chrIV:3636626-3636706 1.0000 80 chrIV:14576646-14576726 1.0000 80 chrIV:620504-620584 1.0000 80 chrIII:535311-535391 1.0000 80 chrV:6221569-6221649 1.0000 80 chrV:12780388-12780468 1.0000 80 chrIII:8106674-8106754 1.0000 80 chrIV:3552151-3552231 1.0000 80 chrIII:1122405-1122485 1.0000 80 chrIV:16398321-16398401 1.0000 80 chrIV:16399197-16399277 1.0000 80 chrX:8646493-8646573 1.0000 80 chrV:10717224-10717304 1.0000 80 chrV:13962163-13962243 1.0000 80 chrIII:12399876-12399956 1.0000 80 chrI:6724489-6724569 1.0000 80 chrIII:10634224-10634304 1.0000 80 chrX:16928203-16928283 1.0000 80 chrX:16602615-16602695 1.0000 80 chrIII:1218485-1218565 1.0000 80 chrX:5812395-5812475 1.0000 80 chrII:6565248-6565328 1.0000 80 chrX:3914425-3914505 1.0000 80 chrII:11747030-11747110 1.0000 80 chrIII:3175164-3175244 1.0000 80 chrIV:11605085-11605165 1.0000 80 chrIII:10432239-10432319 1.0000 80 chrX:5707954-5708034 1.0000 80 chrI:14721580-14721660 1.0000 80 chrX:17030551-17030631 1.0000 80 chrX:5319411-5319491 1.0000 80 chrX:12843640-12843720 1.0000 80 chrIII:12368910-12368990 1.0000 80 chrV:14524331-14524411 1.0000 80 chrIV:11026189-11026269 1.0000 80 chrIII:4568692-4568772 1.0000 80 chrX:5812190-5812270 1.0000 80 chrX:9296729-9296809 1.0000 80 chrIII:4171162-4171242 1.0000 80 chrII:9566207-9566287 1.0000 80 chrX:3348032-3348112 1.0000 80 chrX:12452311-12452391 1.0000 80 chrX:1858772-1858852 1.0000 80 chrIV:9477744-9477824 1.0000 80 chrIII:4426751-4426831 1.0000 80 chrV:15505274-15505354 1.0000 80 chrX:8386226-8386306 1.0000 80 chrI:11910999-11911079 1.0000 80 chrIII:1604669-1604749 1.0000 80 chrI:2935735-2935815 1.0000 80 chrIV:16776095-16776175 1.0000 80 chrIII:6133619-6133699 1.0000 80 chrII:5577241-5577321 1.0000 80 chrIV:842820-842900 1.0000 80 chrX:3694291-3694371 1.0000 80 chrV:53462-53542 1.0000 80 chrX:11643928-11644008 1.0000 80 chrIII:8794867-8794947 1.0000 80 chrII:7756941-7757021 1.0000 80 chrX:9637897-9637977 1.0000 80 chrIV:9316165-9316245 1.0000 80 chrIII:1601610-1601690 1.0000 80 chrII:8547145-8547225 1.0000 80 chrII:14250407-14250487 1.0000 80 chrIV:11310792-11310872 1.0000 80 chrX:10568536-10568616 1.0000 80 chrX:6286300-6286380 1.0000 80 chrIV:143922-144002 1.0000 80 chrIII:8768074-8768154 1.0000 80 chrII:4942505-4942585 1.0000 80 chrX:13781636-13781716 1.0000 80 chrI:11323397-11323477 1.0000 80 chrIII:8874327-8874407 1.0000 80 chrIV:4748467-4748547 1.0000 80 chrV:11610631-11610711 1.0000 80 chrX:13121276-13121356 1.0000 80 chrIV:3524800-3524880 1.0000 80 chrIV:2805558-2805638 1.0000 80 chrX:11252586-11252666 1.0000 80 chrIII:5555084-5555164 1.0000 80 chrII:11547585-11547665 1.0000 80 chrII:3521517-3521597 1.0000 80 chrIV:2639840-2639920 1.0000 80 chrV:19126072-19126152 1.0000 80 chrX:16147732-16147812 1.0000 80 chrIII:4369609-4369689 1.0000 80 chrII:3439481-3439561 1.0000 80 chrIII:5295000-5295080 1.0000 80 chrI:1958522-1958602 1.0000 80 chrV:2674041-2674121 1.0000 80 chrX:1880794-1880874 1.0000 80 chrX:15742064-15742144 1.0000 80 chrIII:5211425-5211505 1.0000 80 chrIII:11371423-11371503 1.0000 80 chrX:9338039-9338119 1.0000 80 chrV:4731561-4731641 1.0000 80 chrIII:89340-89420 1.0000 80 chrX:12480544-12480624 1.0000 80 chrIII:6158712-6158792 1.0000 80 chrII:9774796-9774876 1.0000 80 chrI:9988912-9988992 1.0000 80 chrII:14635403-14635483 1.0000 80 chrIII:10624704-10624784 1.0000 80 chrIII:9861637-9861717 1.0000 80 chrI:9268901-9268981 1.0000 80 chrIII:835925-836005 1.0000 80 chrV:6888974-6889054 1.0000 80 chrIII:9104229-9104309 1.0000 80 chrI:9267148-9267228 1.0000 80 chrV:20694119-20694199 1.0000 80 chrII:8107273-8107353 1.0000 80 chrX:10963798-10963878 1.0000 80 chrV:15551795-15551875 1.0000 80 chrX:1379598-1379678 1.0000 80 chrI:2514285-2514365 1.0000 80 chrIII:4470951-4471031 1.0000 80 chrX:11644130-11644210 1.0000 80 chrX:15297482-15297562 1.0000 80 chrIII:6887699-6887779 1.0000 80 chrI:10593162-10593242 1.0000 80 chrX:6371312-6371392 1.0000 80 chrIII:5602225-5602305 1.0000 80 chrX:6292287-6292367 1.0000 80 chrX:12563779-12563859 1.0000 80 chrI:13160993-13161073 1.0000 80 chrIV:8253005-8253085 1.0000 80 chrIV:683042-683122 1.0000 80 chrIV:6556782-6556862 1.0000 80 chrI:14737416-14737496 1.0000 80 chrII:5292395-5292475 1.0000 80 chrV:16592254-16592334 1.0000 80 chrI:11505546-11505626 1.0000 80 chrV:9503531-9503611 1.0000 80 chrX:3697749-3697829 1.0000 80 chrX:12661215-12661295 1.0000 80 chrII:12494699-12494779 1.0000 80 chrIII:8937742-8937822 1.0000 80 chrIV:13386156-13386236 1.0000 80 chrX:2549523-2549603 1.0000 80 chrX:13512010-13512090 1.0000 80 chrX:7951655-7951735 1.0000 80 chrX:6593556-6593636 1.0000 80 chrIII:1424461-1424541 1.0000 80 chrII:5782131-5782211 1.0000 80 chrX:489885-489965 1.0000 80 chrII:14063353-14063433 1.0000 80 chrX:9467771-9467851 1.0000 80 chrIII:10461278-10461358 1.0000 80 chrX:4606634-4606714 1.0000 80 chrV:19643215-19643295 1.0000 80 chrII:5105247-5105327 1.0000 80 chrX:12106160-12106240 1.0000 80 chrIII:8678514-8678594 1.0000 80 chrII:5661155-5661235 1.0000 80 chrII:7200208-7200288 1.0000 80 chrX:11757835-11757915 1.0000 80 chrX:3371452-3371532 1.0000 80 chrII:11484759-11484839 1.0000 80 chrII:7184057-7184137 1.0000 80 chrX:5165186-5165266 1.0000 80 chrIV:9511510-9511590 1.0000 80 chrX:15181552-15181632 1.0000 80 chrII:8075398-8075478 1.0000 80 chrI:8259526-8259606 1.0000 80 chrII:5032792-5032872 1.0000 80 chrI:1836738-1836818 1.0000 80 chrX:2227157-2227237 1.0000 80 chrX:10188512-10188592 1.0000 80 chrIV:12594742-12594822 1.0000 80 chrV:9970281-9970361 1.0000 80 chrX:7501010-7501090 1.0000 80 chrV:15873927-15874007 1.0000 80 chrIV:1420255-1420335 1.0000 80 chrII:6853173-6853253 1.0000 80 chrX:6903053-6903133 1.0000 80 chrIV:11549865-11549945 1.0000 80 chrIII:9619305-9619385 1.0000 80 chrIII:4689804-4689884 1.0000 80 chrI:2410121-2410201 1.0000 80 chrIV:14838340-14838420 1.0000 80 chrIII:8109570-8109650 1.0000 80 chrIV:11474210-11474290 1.0000 80 chrIV:1595945-1596025 1.0000 80 chrX:16634864-16634944 1.0000 80 chrI:6105766-6105846 1.0000 80 chrIV:8375529-8375609 1.0000 80 chrX:2613212-2613292 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_flh-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/flh-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.243 C 0.255 G 0.259 T 0.243 Background letter frequencies (from file dataset with add-one prior applied): A 0.243 C 0.255 G 0.259 T 0.243 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCGAACCC MEME-1 width = 8 sites = 55 llr = 447 E-value = 8.5e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a6::1 pos.-specific C :8::18a7 probability G ::a:2::: matrix T a2::22:1 bits 2.0 * ** 1.8 * ** * 1.6 * ** * 1.4 **** * Relative 1.2 **** ** Entropy 1.0 **** ** (11.7 bits) 0.8 **** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGAACCC consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:11549865-11549945 10 1.57e-05 CCACGAGAA TCGAACCC GTGATGCATA chrV:15873927-15874007 1 1.57e-05 . TCGAACCC GTGGCATGCC chrX:11757835-11757915 11 1.57e-05 CGAGTGGGGT TCGAACCC ACGAGGTGTT chrX:12106160-12106240 2 1.57e-05 C TCGAACCC GCGACAACCA chrX:6292287-6292367 6 1.57e-05 GGGAA TCGAACCC CAGACTTCTC chrIII:6887699-6887779 44 1.57e-05 CCTAGGGGAC TCGAACCC CTGACCTTAA chrX:1379598-1379678 20 1.57e-05 TCGGGGGGAA TCGAACCC CCGTCGAATG chrX:15742064-15742144 51 1.57e-05 GGGCGCAGGT TCGAACCC TGCGGACGGC chrX:1880794-1880874 38 1.57e-05 GAACCGGGAA TCGAACCC GGGACCTCTC chrIII:1604669-1604749 48 1.57e-05 TTGCGGGGAA TCGAACCC CGGCCTTATG chrIV:3552151-3552231 53 1.57e-05 GAACCGGGAA TCGAACCC GGGACCTCTC chrIV:620504-620584 32 1.57e-05 GGTCGCCGGT TCGAACCC GGCGAGGACC chrIV:1388204-1388284 27 1.57e-05 ATGCCGGGAA TCGAACCC GGGCCGCGTG chrV:16622054-16622134 20 1.57e-05 CCTAGGGGAC TCGAACCC CTGACCTTAA chrIII:7642158-7642238 15 1.57e-05 TTGCGGGGAA TCGAACCC CGGCCTTATG chrIV:12594742-12594822 52 4.74e-05 TGTCGCGGGT TCGAGCCC CGCATTGGGC chrIV:3524800-3524880 73 4.74e-05 GATTGCAGGT TCGAATCC chrX:13781636-13781716 58 4.74e-05 TGTCGCGGGT TCGAGCCC CGCATTGGGC chrX:8386226-8386306 32 4.74e-05 GATTGCAGGT TCGAGCCC TGCCTGGGTC chrI:11584812-11584892 29 4.74e-05 TGTCGCGGGT TCGAGCCC CGCATTGGGC chrI:2410121-2410201 57 6.32e-05 GCGCGCTGGT TCGATCCC CACCAAGCGA chrI:9268901-9268981 42 6.32e-05 GAGCCGGGGA TCGATCCC GGGACCTCTC chrX:2549523-2549603 20 9.31e-05 CCGGGTGGGC TCGAACCA CCAACCTTTC chrIII:10624704-10624784 53 9.31e-05 CATGCTGGAA TCGAACCA GCGACCTTCT chrX:11252586-11252666 19 9.31e-05 ACGGCAGGAT TCGAACCT ACAATCTTCT chrX:16602615-16602695 34 9.31e-05 GGTGTGGGGG TCGAACCA TTAACCCCCC chrV:12780388-12780468 13 9.31e-05 CGAGCAGGGT TCGAACCT ACGCGGGCAA chrX:2227157-2227237 49 1.08e-04 cggccgggaa ttgaaccc gggtctcgca chrII:8075398-8075478 48 1.08e-04 GATCTAGTTG TTGAACCC ATGGCCTATT chrI:2514285-2514365 29 1.08e-04 GGAGGCGGAA TTGAACCC GTGGTGTTGC chrV:15551795-15551875 19 1.08e-04 cggccgggaa ttgaaccc gggtctcgca chrX:12890274-12890354 26 1.08e-04 GCACGGGGAA TTGAACCC CGGACTTCTC chrII:5032792-5032872 33 1.41e-04 GGTCGCAGGT TCGACCCC TGCTGGCGGC chrX:15297482-15297562 44 1.41e-04 GGTCGCAGGT TCGACCCC TGCTGGCGGC chrI:9267148-9267228 28 1.41e-04 GATTGCAGGT TCGAGTCC TGCCGTGGTC chrII:6565248-6565328 54 1.41e-04 GGTCAGGGGT TCGAGTCC CCTAGGTGGC chrX:14115675-14115755 70 1.41e-04 GACTGCAGGT TCGAGTCC TGC chrI:10593162-10593242 27 1.55e-04 cggcccgggt tcgattcc cggtcgatgc chrV:2674041-2674121 22 1.55e-04 GGTCGCTGGT TCGATTCC AGCATGAGGC chrIV:842820-842900 42 1.55e-04 CGGCCCGGGT TCGATTCC CGGCATGGGA chrIV:16776095-16776175 46 1.55e-04 CGACGGGGGT TCGATTCC CCCCGAACGC chrX:8646493-8646573 40 1.55e-04 CGGCCCGGGT TCGATTCC CGGCATGGGA chrX:3994603-3994683 52 1.55e-04 CGACGGGGGT TCGATTCC CCCCCCCCCG chrX:12661215-12661295 14 2.16e-04 GGTCGCCAGT TCGAGCCT GGCATGGGGC chrX:3697749-3697829 61 2.16e-04 GGTCGTGAGT TCGAGCCT CACCGGGAGC chrII:9566207-9566287 67 2.16e-04 GCACCAGACT TCGAATCT GGGGAT chrIII:8106674-8106754 33 2.16e-04 GGTCGTGAGT TCGAGCCT CACCGGGAGC chrV:19126072-19126152 26 2.76e-04 GGTCACCAGT TCGATCCT GGTTCGGGGC chrV:20694119-20694199 17 3.20e-04 GCACCCGGAG TTGAACCA GGGACCTCTC chrIII:11371423-11371503 2 3.20e-04 T TTGAACCA GTGACCTTCA chrX:3914425-3914505 62 3.20e-04 GCAGCGGGGA TTGAACCA GAGTACGAGG chrV:14855766-14855846 36 3.20e-04 GCACCCGGAG TTGAACCA GGGACCTCTC chrIII:9861637-9861717 16 3.97e-04 CCATTTGATT TCGAGTCA AACTCCTTAA chrI:2935735-2935815 38 3.97e-04 ACACCACAGC TCGACCCT GACACACGGC chrIII:8678514-8678594 25 4.73e-04 CGATCTGGAG TCGAACGC GCTACCATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:11549865-11549945 1.6e-05 9_[+1]_63 chrV:15873927-15874007 1.6e-05 [+1]_72 chrX:11757835-11757915 1.6e-05 10_[+1]_62 chrX:12106160-12106240 1.6e-05 1_[+1]_71 chrX:6292287-6292367 1.6e-05 5_[+1]_67 chrIII:6887699-6887779 1.6e-05 43_[+1]_29 chrX:1379598-1379678 1.6e-05 19_[+1]_53 chrX:15742064-15742144 1.6e-05 50_[+1]_22 chrX:1880794-1880874 1.6e-05 37_[+1]_35 chrIII:1604669-1604749 1.6e-05 47_[+1]_25 chrIV:3552151-3552231 1.6e-05 52_[+1]_20 chrIV:620504-620584 1.6e-05 31_[+1]_41 chrIV:1388204-1388284 1.6e-05 26_[+1]_46 chrV:16622054-16622134 1.6e-05 19_[+1]_53 chrIII:7642158-7642238 1.6e-05 14_[+1]_58 chrIV:12594742-12594822 4.7e-05 51_[+1]_21 chrIV:3524800-3524880 4.7e-05 72_[+1] chrX:13781636-13781716 4.7e-05 57_[+1]_15 chrX:8386226-8386306 4.7e-05 31_[+1]_41 chrI:11584812-11584892 4.7e-05 28_[+1]_44 chrI:2410121-2410201 6.3e-05 56_[+1]_16 chrI:9268901-9268981 6.3e-05 41_[+1]_31 chrX:2549523-2549603 9.3e-05 19_[+1]_53 chrIII:10624704-10624784 9.3e-05 52_[+1]_20 chrX:11252586-11252666 9.3e-05 18_[+1]_54 chrX:16602615-16602695 9.3e-05 33_[+1]_39 chrV:12780388-12780468 9.3e-05 12_[+1]_60 chrX:2227157-2227237 0.00011 48_[+1]_24 chrII:8075398-8075478 0.00011 47_[+1]_25 chrI:2514285-2514365 0.00011 28_[+1]_44 chrV:15551795-15551875 0.00011 18_[+1]_54 chrX:12890274-12890354 0.00011 25_[+1]_47 chrII:5032792-5032872 0.00014 32_[+1]_40 chrX:15297482-15297562 0.00014 43_[+1]_29 chrI:9267148-9267228 0.00014 27_[+1]_45 chrII:6565248-6565328 0.00014 53_[+1]_19 chrX:14115675-14115755 0.00014 69_[+1]_3 chrI:10593162-10593242 0.00016 26_[+1]_46 chrV:2674041-2674121 0.00016 21_[+1]_51 chrIV:842820-842900 0.00016 41_[+1]_31 chrIV:16776095-16776175 0.00016 45_[+1]_27 chrX:8646493-8646573 0.00016 39_[+1]_33 chrX:3994603-3994683 0.00016 51_[+1]_21 chrX:12661215-12661295 0.00022 13_[+1]_59 chrX:3697749-3697829 0.00022 60_[+1]_12 chrII:9566207-9566287 0.00022 66_[+1]_6 chrIII:8106674-8106754 0.00022 32_[+1]_40 chrV:19126072-19126152 0.00028 25_[+1]_47 chrV:20694119-20694199 0.00032 16_[+1]_56 chrIII:11371423-11371503 0.00032 1_[+1]_71 chrX:3914425-3914505 0.00032 61_[+1]_11 chrV:14855766-14855846 0.00032 35_[+1]_37 chrIII:9861637-9861717 0.0004 15_[+1]_57 chrI:2935735-2935815 0.0004 37_[+1]_35 chrIII:8678514-8678594 0.00047 24_[+1]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAACCC width=8 seqs=55 chrIV:11549865-11549945 ( 10) TCGAACCC 1 chrV:15873927-15874007 ( 1) TCGAACCC 1 chrX:11757835-11757915 ( 11) TCGAACCC 1 chrX:12106160-12106240 ( 2) TCGAACCC 1 chrX:6292287-6292367 ( 6) TCGAACCC 1 chrIII:6887699-6887779 ( 44) TCGAACCC 1 chrX:1379598-1379678 ( 20) TCGAACCC 1 chrX:15742064-15742144 ( 51) TCGAACCC 1 chrX:1880794-1880874 ( 38) TCGAACCC 1 chrIII:1604669-1604749 ( 48) TCGAACCC 1 chrIV:3552151-3552231 ( 53) TCGAACCC 1 chrIV:620504-620584 ( 32) TCGAACCC 1 chrIV:1388204-1388284 ( 27) TCGAACCC 1 chrV:16622054-16622134 ( 20) TCGAACCC 1 chrIII:7642158-7642238 ( 15) TCGAACCC 1 chrIV:12594742-12594822 ( 52) TCGAGCCC 1 chrIV:3524800-3524880 ( 73) TCGAATCC 1 chrX:13781636-13781716 ( 58) TCGAGCCC 1 chrX:8386226-8386306 ( 32) TCGAGCCC 1 chrI:11584812-11584892 ( 29) TCGAGCCC 1 chrI:2410121-2410201 ( 57) TCGATCCC 1 chrI:9268901-9268981 ( 42) TCGATCCC 1 chrX:2549523-2549603 ( 20) TCGAACCA 1 chrIII:10624704-10624784 ( 53) TCGAACCA 1 chrX:11252586-11252666 ( 19) TCGAACCT 1 chrX:16602615-16602695 ( 34) TCGAACCA 1 chrV:12780388-12780468 ( 13) TCGAACCT 1 chrX:2227157-2227237 ( 49) TTGAACCC 1 chrII:8075398-8075478 ( 48) TTGAACCC 1 chrI:2514285-2514365 ( 29) TTGAACCC 1 chrV:15551795-15551875 ( 19) TTGAACCC 1 chrX:12890274-12890354 ( 26) TTGAACCC 1 chrII:5032792-5032872 ( 33) TCGACCCC 1 chrX:15297482-15297562 ( 44) TCGACCCC 1 chrI:9267148-9267228 ( 28) TCGAGTCC 1 chrII:6565248-6565328 ( 54) TCGAGTCC 1 chrX:14115675-14115755 ( 70) TCGAGTCC 1 chrI:10593162-10593242 ( 27) TCGATTCC 1 chrV:2674041-2674121 ( 22) TCGATTCC 1 chrIV:842820-842900 ( 42) TCGATTCC 1 chrIV:16776095-16776175 ( 46) TCGATTCC 1 chrX:8646493-8646573 ( 40) TCGATTCC 1 chrX:3994603-3994683 ( 52) TCGATTCC 1 chrX:12661215-12661295 ( 14) TCGAGCCT 1 chrX:3697749-3697829 ( 61) TCGAGCCT 1 chrII:9566207-9566287 ( 67) TCGAATCT 1 chrIII:8106674-8106754 ( 33) TCGAGCCT 1 chrV:19126072-19126152 ( 26) TCGATCCT 1 chrV:20694119-20694199 ( 17) TTGAACCA 1 chrIII:11371423-11371503 ( 2) TTGAACCA 1 chrX:3914425-3914505 ( 62) TTGAACCA 1 chrV:14855766-14855846 ( 36) TTGAACCA 1 chrIII:9861637-9861717 ( 16) TCGAGTCA 1 chrI:2935735-2935815 ( 38) TCGACCCT 1 chrIII:8678514-8678594 ( 25) TCGAACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.58084 E= 8.5e-018 -1243 -1243 -1243 204 -1243 171 -1243 -57 -1243 -1243 195 -1243 204 -1243 -1243 -1243 126 -222 -37 -57 -1243 162 -1243 -15 -1243 195 -383 -1243 -74 148 -1243 -74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 8.5e-018 0.000000 0.000000 0.000000 1.000000 0.000000 0.836364 0.000000 0.163636 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.581818 0.054545 0.200000 0.163636 0.000000 0.781818 0.000000 0.218182 0.000000 0.981818 0.018182 0.000000 0.145455 0.709091 0.000000 0.145455 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 regular expression -------------------------------------------------------------------------------- TCGA[AG][CT]CC -------------------------------------------------------------------------------- Time 9.99 secs. ******************************************************************************** ******************************************************************************** MOTIF TAACCACT MEME-2 width = 8 sites = 22 llr = 213 E-value = 3.9e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAACCACT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :99::9:: pos.-specific C :1:aa:9: probability G ::1::1:: matrix T a:::::1a bits 2.0 ** * 1.8 * ** * 1.6 ** ***** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (13.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAACCACT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:8375529-8375609 63 1.40e-05 CCACGTCTCT TAACCACT AGACCAAGCG chrX:16634864-16634944 17 1.40e-05 CGTGGAGTAC TAACCACT ATACTACGCA chrIII:4689804-4689884 12 1.40e-05 CAAACAGCGC TAACCACT CGGACACACG chrX:11757835-11757915 59 1.40e-05 TCCAACGCCT TAACCACT CGGCCATCGT chrII:5105247-5105327 29 1.40e-05 GCGCGCACGC TAACCACT CGGCCACACA chrIII:9861637-9861717 31 1.40e-05 TCAAACTCCT TAACCACT CGGACATGAC chrIV:2639840-2639920 20 1.40e-05 CCACGAATCC TAACCACT AGACCACATA chrII:3521517-3521597 21 1.40e-05 CGTGGAGTAC TAACCACT ATACTACGCA chrII:5577241-5577321 11 1.40e-05 GCAGACGTGA TAACCACT ACACCATAGG chrV:12780388-12780468 59 1.40e-05 TCCAACTCCT TAACCACT CGGACATCGC chrIV:1388204-1388284 63 1.40e-05 CCACGAATCC TAACCACT AGACCACATG chrIII:7642158-7642238 51 1.40e-05 CCATAAATCC TAACCACT AGACCACAAC chrV:19643215-19643295 12 2.90e-05 GCGAGCGCGT TAGCCACT AAGCCACGGG chrIII:89340-89420 6 2.90e-05 GTCAC TAGCCACT AGGCTACACG chrIII:1601610-1601690 9 2.90e-05 GAGGTCGG TAGCCACT AAGCCATGGT chrIV:11474210-11474290 34 4.24e-05 GCGCACACGT TAACCATT CGACCACACG chrII:8107273-8107353 40 4.24e-05 ACACTCACGC TAACCATT CGGCCACAAG chrX:489885-489965 34 7.21e-05 ACGCGGATAC TCACCACT ATACTACCGA chrV:16592254-16592334 34 7.21e-05 TCCTGAGTGC TAACCGCT ACACCATGGA chrV:15551795-15551875 55 7.21e-05 acgcggatac tcaccact atactaccga chrII:7756941-7757021 59 7.21e-05 TCCTGAGTGC TAACCGCT ACACCATGGA chrI:12229303-12229383 62 8.62e-05 CGGTGGATCG AAACCACT CGCTGCTAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:8375529-8375609 1.4e-05 62_[+2]_10 chrX:16634864-16634944 1.4e-05 16_[+2]_56 chrIII:4689804-4689884 1.4e-05 11_[+2]_61 chrX:11757835-11757915 1.4e-05 58_[+2]_14 chrII:5105247-5105327 1.4e-05 28_[+2]_44 chrIII:9861637-9861717 1.4e-05 30_[+2]_42 chrIV:2639840-2639920 1.4e-05 19_[+2]_53 chrII:3521517-3521597 1.4e-05 20_[+2]_52 chrII:5577241-5577321 1.4e-05 10_[+2]_62 chrV:12780388-12780468 1.4e-05 58_[+2]_14 chrIV:1388204-1388284 1.4e-05 62_[+2]_10 chrIII:7642158-7642238 1.4e-05 50_[+2]_22 chrV:19643215-19643295 2.9e-05 11_[+2]_61 chrIII:89340-89420 2.9e-05 5_[+2]_67 chrIII:1601610-1601690 2.9e-05 8_[+2]_64 chrIV:11474210-11474290 4.2e-05 33_[+2]_39 chrII:8107273-8107353 4.2e-05 39_[+2]_33 chrX:489885-489965 7.2e-05 33_[+2]_39 chrV:16592254-16592334 7.2e-05 33_[+2]_39 chrV:15551795-15551875 7.2e-05 54_[+2]_18 chrII:7756941-7757021 7.2e-05 58_[+2]_14 chrI:12229303-12229383 8.6e-05 61_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAACCACT width=8 seqs=22 chrIV:8375529-8375609 ( 63) TAACCACT 1 chrX:16634864-16634944 ( 17) TAACCACT 1 chrIII:4689804-4689884 ( 12) TAACCACT 1 chrX:11757835-11757915 ( 59) TAACCACT 1 chrII:5105247-5105327 ( 29) TAACCACT 1 chrIII:9861637-9861717 ( 31) TAACCACT 1 chrIV:2639840-2639920 ( 20) TAACCACT 1 chrII:3521517-3521597 ( 21) TAACCACT 1 chrII:5577241-5577321 ( 11) TAACCACT 1 chrV:12780388-12780468 ( 59) TAACCACT 1 chrIV:1388204-1388284 ( 63) TAACCACT 1 chrIII:7642158-7642238 ( 51) TAACCACT 1 chrV:19643215-19643295 ( 12) TAGCCACT 1 chrIII:89340-89420 ( 6) TAGCCACT 1 chrIII:1601610-1601690 ( 9) TAGCCACT 1 chrIV:11474210-11474290 ( 34) TAACCATT 1 chrII:8107273-8107353 ( 40) TAACCATT 1 chrX:489885-489965 ( 34) TCACCACT 1 chrV:16592254-16592334 ( 34) TAACCGCT 1 chrV:15551795-15551875 ( 55) TCACCACT 1 chrII:7756941-7757021 ( 59) TAACCGCT 1 chrI:12229303-12229383 ( 62) AAACCACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7218 E= 3.9e-006 -242 -1110 -1110 198 190 -149 -1110 -1110 183 -1110 -93 -1110 -1110 197 -1110 -1110 -1110 197 -1110 -1110 190 -1110 -151 -1110 -1110 183 -1110 -142 -1110 -1110 -1110 204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 3.9e-006 0.045455 0.000000 0.000000 0.954545 0.909091 0.090909 0.000000 0.000000 0.863636 0.000000 0.136364 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-2 regular expression -------------------------------------------------------------------------------- TAACCACT -------------------------------------------------------------------------------- Time 14.86 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-3 width = 8 sites = 14 llr = 149 E-value = 4.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a::::a: pos.-specific C :::a:a:: probability G ::a:1::a matrix T a:::9::: bits 2.0 **** *** 1.8 **** *** 1.6 **** *** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (15.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:12594742-12594822 5 1.52e-05 CGGT TAGCTCAG TCGGTAGAGC chrX:6593556-6593636 47 1.52e-05 ACTGCCTCGA TAGCTCAG TTGGGAGAGC chrII:12494699-12494779 49 1.52e-05 TCGGCCGCCA TAGCTCAG TCGGTTAGAG chrV:9503531-9503611 38 1.52e-05 GTCGGGGGTA TAGCTCAG GGGTAGAGCG chrI:11505546-11505626 12 1.52e-05 ATCGGGGGTA TAGCTCAG TGGCAGAGCA chrX:12563779-12563859 16 1.52e-05 TGTGCCCTTA TAGCTCAG TGGTAGAGCG chrX:13781636-13781716 11 1.52e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrX:6286300-6286380 28 1.52e-05 TGCGGGGGTA TAGCTCAG GGGTAGAGCG chrII:6565248-6565328 7 1.52e-05 CCTCCT TAGCTCAG TTGGTAGAGC chrIV:16398321-16398401 70 1.52e-05 TGCGGGGGTA TAGCTCAG TGG chrI:6136561-6136641 43 1.52e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrII:7001564-7001644 70 1.52e-05 GTTACCTGTG TAGCTCAG GGG chrX:3697749-3697829 14 3.14e-05 CGTGCTTCCG TAGCGCAG TAGGCAGCGC chrIII:1122405-1122485 36 3.14e-05 TGTTGCCGTT TAGCGCAG GCGGGAGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:12594742-12594822 1.5e-05 4_[+3]_68 chrX:6593556-6593636 1.5e-05 46_[+3]_26 chrII:12494699-12494779 1.5e-05 48_[+3]_24 chrV:9503531-9503611 1.5e-05 37_[+3]_35 chrI:11505546-11505626 1.5e-05 11_[+3]_61 chrX:12563779-12563859 1.5e-05 15_[+3]_57 chrX:13781636-13781716 1.5e-05 10_[+3]_62 chrX:6286300-6286380 1.5e-05 27_[+3]_45 chrII:6565248-6565328 1.5e-05 6_[+3]_66 chrIV:16398321-16398401 1.5e-05 69_[+3]_3 chrI:6136561-6136641 1.5e-05 42_[+3]_30 chrII:7001564-7001644 1.5e-05 69_[+3]_3 chrX:3697749-3697829 3.1e-05 13_[+3]_59 chrIII:1122405-1122485 3.1e-05 35_[+3]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=14 chrIV:12594742-12594822 ( 5) TAGCTCAG 1 chrX:6593556-6593636 ( 47) TAGCTCAG 1 chrII:12494699-12494779 ( 49) TAGCTCAG 1 chrV:9503531-9503611 ( 38) TAGCTCAG 1 chrI:11505546-11505626 ( 12) TAGCTCAG 1 chrX:12563779-12563859 ( 16) TAGCTCAG 1 chrX:13781636-13781716 ( 11) TAGCTCAG 1 chrX:6286300-6286380 ( 28) TAGCTCAG 1 chrII:6565248-6565328 ( 7) TAGCTCAG 1 chrIV:16398321-16398401 ( 70) TAGCTCAG 1 chrI:6136561-6136641 ( 43) TAGCTCAG 1 chrII:7001564-7001644 ( 70) TAGCTCAG 1 chrX:3697749-3697829 ( 14) TAGCGCAG 1 chrIII:1122405-1122485 ( 36) TAGCGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 4.3e-003 -1045 -1045 -1045 204 204 -1045 -1045 -1045 -1045 -1045 195 -1045 -1045 197 -1045 -1045 -1045 -1045 -86 182 -1045 197 -1045 -1045 204 -1045 -1045 -1045 -1045 -1045 195 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 4.3e-003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 18.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GMGCGCGC MEME-4 width = 8 sites = 28 llr = 238 E-value = 4.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GMGCGCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :411:::: pos.-specific C :6:9:a:9 probability G a:9:a:81 matrix T ::::::3: bits 2.0 * * 1.8 * ** 1.6 * *** 1.4 * **** * Relative 1.2 * ****** Entropy 1.0 ******** (12.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGCGC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:1420255-1420335 55 1.90e-05 GCAGTGAAGC GCGCGCGC ACGCGACGCG chrV:9970281-9970361 34 1.90e-05 CAAGAACGAC GCGCGCGC CTCTTCCCCA chrII:7184057-7184137 57 1.90e-05 TCCCCCCAAT GCGCGCGC ACATCCACTG chrII:5661155-5661235 1 1.90e-05 . GCGCGCGC GTTCAGTCGC chrV:4731561-4731641 39 1.90e-05 TTGCAAAAAC GCGCGCGC GCATTGCATG chrIII:5555084-5555164 53 1.90e-05 TGCGCAAAAA GCGCGCGC ACATTGCGTT chrI:14721580-14721660 41 1.90e-05 TTTGCAATGC GCGCGCGC GGTTTTCGCA chrIII:3916788-3916868 44 1.90e-05 TGCAAACACT GCGCGCGC AGCTTGCAAG chrII:7708717-7708797 37 1.90e-05 ACAATGCAAT GCGCGCGC ACGGTTTTTG chrII:7200208-7200288 71 3.72e-05 GTTCCCTGTT GAGCGCGC TA chrII:5105247-5105327 17 3.72e-05 TCAATTCGTA GAGCGCGC ACGCTAACCA chrV:11610631-11610711 6 5.50e-05 AATGT GCGCGCTC ATCTTGCAAA chrV:9503531-9503611 51 7.20e-05 CTCAGGGGTA GAGCGCTC GCTTCGCATG chrX:6292287-6292367 35 7.20e-05 CATGCAAAGC GAGCGCTC TACCCCTGAG chrX:6286300-6286380 41 7.20e-05 CTCAGGGGTA GAGCGCTC GCTTTGCATG chrIV:9316165-9316245 25 7.20e-05 CTAATAACGA GAGCGCTC GATAATGAAA chrIV:16399197-16399277 7 7.20e-05 GTGGTA GAGCGCTC CCTTAGCATG chrX:12890274-12890354 55 7.20e-05 CATGCGAAGC GAGCGCTC TACCCCTGAG chrII:11484759-11484839 34 8.99e-05 AGTGGCGGGC GCACGCGC ACACCACTCG chrX:2549523-2549603 49 1.07e-04 GTTAACAGCC GAACGCGC TGCCTATTGC chrIII:9104229-9104309 22 1.07e-04 GTTAACAGCC GAACGCGC TGCCTATTGC chrIV:14576646-14576726 42 1.07e-04 ATTACACCAC GAACGCGC TGTTTAAAGC chrIII:10461278-10461358 19 1.26e-04 TGTGTAAAAT GCGCGCGG CACACTTGCG chrIII:4171162-4171242 2 1.26e-04 T GCGCGCGG CATATCTGCA chrV:13962163-13962243 43 1.26e-04 TGCATAAACT GCGCGCGG CAACTGCAAA chrV:19643215-19643295 2 1.63e-04 G GCGAGCGC GTTAGCCACT chrX:12480544-12480624 14 1.97e-04 CAAACACTGC GAGAGCGC CACCTCGTCC chrX:7951655-7951735 47 2.49e-04 TCTCTTCATT GCGCGTGC TCTTTATGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1420255-1420335 1.9e-05 54_[+4]_18 chrV:9970281-9970361 1.9e-05 33_[+4]_39 chrII:7184057-7184137 1.9e-05 56_[+4]_16 chrII:5661155-5661235 1.9e-05 [+4]_72 chrV:4731561-4731641 1.9e-05 38_[+4]_34 chrIII:5555084-5555164 1.9e-05 52_[+4]_20 chrI:14721580-14721660 1.9e-05 40_[+4]_32 chrIII:3916788-3916868 1.9e-05 43_[+4]_29 chrII:7708717-7708797 1.9e-05 36_[+4]_36 chrII:7200208-7200288 3.7e-05 70_[+4]_2 chrII:5105247-5105327 3.7e-05 16_[+4]_56 chrV:11610631-11610711 5.5e-05 5_[+4]_67 chrV:9503531-9503611 7.2e-05 50_[+4]_22 chrX:6292287-6292367 7.2e-05 34_[+4]_38 chrX:6286300-6286380 7.2e-05 40_[+4]_32 chrIV:9316165-9316245 7.2e-05 24_[+4]_48 chrIV:16399197-16399277 7.2e-05 6_[+4]_66 chrX:12890274-12890354 7.2e-05 54_[+4]_18 chrII:11484759-11484839 9e-05 33_[+4]_39 chrX:2549523-2549603 0.00011 48_[+4]_24 chrIII:9104229-9104309 0.00011 21_[+4]_51 chrIV:14576646-14576726 0.00011 41_[+4]_31 chrIII:10461278-10461358 0.00013 18_[+4]_54 chrIII:4171162-4171242 0.00013 1_[+4]_71 chrV:13962163-13962243 0.00013 42_[+4]_30 chrV:19643215-19643295 0.00016 1_[+4]_71 chrX:12480544-12480624 0.0002 13_[+4]_59 chrX:7951655-7951735 0.00025 46_[+4]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GMGCGCGC width=8 seqs=28 chrIV:1420255-1420335 ( 55) GCGCGCGC 1 chrV:9970281-9970361 ( 34) GCGCGCGC 1 chrII:7184057-7184137 ( 57) GCGCGCGC 1 chrII:5661155-5661235 ( 1) GCGCGCGC 1 chrV:4731561-4731641 ( 39) GCGCGCGC 1 chrIII:5555084-5555164 ( 53) GCGCGCGC 1 chrI:14721580-14721660 ( 41) GCGCGCGC 1 chrIII:3916788-3916868 ( 44) GCGCGCGC 1 chrII:7708717-7708797 ( 37) GCGCGCGC 1 chrII:7200208-7200288 ( 71) GAGCGCGC 1 chrII:5105247-5105327 ( 17) GAGCGCGC 1 chrV:11610631-11610711 ( 6) GCGCGCTC 1 chrV:9503531-9503611 ( 51) GAGCGCTC 1 chrX:6292287-6292367 ( 35) GAGCGCTC 1 chrX:6286300-6286380 ( 41) GAGCGCTC 1 chrIV:9316165-9316245 ( 25) GAGCGCTC 1 chrIV:16399197-16399277 ( 7) GAGCGCTC 1 chrX:12890274-12890354 ( 55) GAGCGCTC 1 chrII:11484759-11484839 ( 34) GCACGCGC 1 chrX:2549523-2549603 ( 49) GAACGCGC 1 chrIII:9104229-9104309 ( 22) GAACGCGC 1 chrIV:14576646-14576726 ( 42) GAACGCGC 1 chrIII:10461278-10461358 ( 19) GCGCGCGG 1 chrIII:4171162-4171242 ( 2) GCGCGCGG 1 chrV:13962163-13962243 ( 43) GCGCGCGG 1 chrV:19643215-19643295 ( 2) GCGAGCGC 1 chrX:12480544-12480624 ( 14) GAGAGCGC 1 chrX:7951655-7951735 ( 47) GCGCGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.95252 E= 4.9e+001 -1145 -1145 195 -1145 82 116 -1145 -1145 -77 -1145 173 -1145 -177 187 -1145 -1145 -1145 -1145 195 -1145 -1145 192 -1145 -276 -1145 -1145 153 4 -1145 181 -127 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 4.9e+001 0.000000 0.000000 1.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.071429 0.928571 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.964286 0.000000 0.035714 0.000000 0.000000 0.750000 0.250000 0.000000 0.892857 0.107143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCGC MEME-4 regular expression -------------------------------------------------------------------------------- G[CA]GCGC[GT]C -------------------------------------------------------------------------------- Time 22.03 secs. ******************************************************************************** ******************************************************************************** MOTIF WGTGTGYG MEME-5 width = 8 sites = 30 llr = 255 E-value = 2.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGTGTGYG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 4::::::2 pos.-specific C ::::::42 probability G :a:a:a:5 matrix T 6:a:a:61 bits 2.0 ***** 1.8 ***** 1.6 ***** 1.4 ***** Relative 1.2 ***** Entropy 1.0 ******* (12.3 bits) 0.8 ******* 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus A CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGTGTGYG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4606634-4606714 13 1.57e-05 tgtgtgtgtg tgtgtgtg tgtgtgGCCC chrX:16147732-16147812 59 1.57e-05 GCAAAAATTG TGTGTGTG TATGTGTGCG chrIII:8794867-8794947 17 1.57e-05 GTCAAACATT TGTGTGTG TACGGGCGCC chrIII:6133619-6133699 14 1.57e-05 cgtgtgtgta tgtgtgtg GAGAAGCATA chrIV:3854812-3854892 8 1.57e-05 CTCTTAT TGTGTGTG AGTGTTGGGT chrIII:445751-445831 12 1.57e-05 tgtgtgtgtg tgtgtgtg tgtgtgtAGG chrII:4130431-4130511 16 1.57e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtT chrI:14737416-14737496 72 4.78e-05 CTTTGCAAAA TGTGTGCG C chrI:1958522-1958602 21 4.78e-05 AAACGGGAAT TGTGTGCG GCGGTGTTGC chrX:10568536-10568616 72 4.78e-05 cgtccacgtg agtgtgtg a chrIII:3916788-3916868 19 4.78e-05 AAACCTAAAG TGTGTGCG GCGACTTTGC chrII:8547145-8547225 26 6.33e-05 TTGGTTAACA TGTGTGTC TCCAGTTTGC chrIII:13717748-13717828 2 6.33e-05 g tgtgtgtc tgtgtgAGAG chrX:2613212-2613292 7 7.98e-05 GTATTT AGTGTGCG TATGTGAGGT chrII:3521517-3521597 46 7.98e-05 GCAGGCCGAA AGTGTGCG CCACTCGGTG chrX:3348032-3348112 31 7.98e-05 GTTGAGTGGT AGTGTGCG GTACTTCGGT chrIV:11026189-11026269 57 7.98e-05 AGGGTGTATT AGTGTGCG CGGACGTTCG chrX:5812190-5812270 48 9.45e-05 GATTGATTTT TGTGTGTA TGTGTTGTGT chrI:5316176-5316256 52 9.45e-05 TGGGGAGgtt tgtgtgta tgtatgtatg chrII:6853173-6853253 16 1.26e-04 GGCACACAAG AGTGTGTC CTCCGTCGGT chrX:5165186-5165266 66 1.26e-04 GACCACGGAA AGTGTGTC AGTGAAG chrIII:4171162-4171242 25 1.26e-04 CTGCAAATCT TGTGTGCC AGGGTTGCAA chrX:6903053-6903133 37 1.71e-04 GTTACCTGTA AGTGTGTA ATTTCAAAAA chrII:4942505-4942585 6 1.71e-04 CTTTC TGTGTGCA TTGAGAATCG chrV:14524331-14524411 73 1.71e-04 TGCTCGCGGT TGTGTGCA chrX:8156097-8156177 59 1.71e-04 TTGTATAGGC TGTGTGTT CTCCTATTAC chrI:11910999-11911079 52 1.87e-04 TTGCGGTAAA AGTGTGCC AGCCTTGCGT chrIV:11605085-11605165 15 1.87e-04 CCCTTTTGCA AGTGTGCC GCACACAGTT chrIV:8253005-8253085 41 2.33e-04 GTGTCGCGGT AGTGTGTT TGGCTCTCGT chrIV:14013863-14013943 60 2.33e-04 GAGATGCCAG AGTGTGTT CGATGTACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGTGTGYG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4606634-4606714 1.6e-05 12_[+5]_60 chrX:16147732-16147812 1.6e-05 58_[+5]_14 chrIII:8794867-8794947 1.6e-05 16_[+5]_56 chrIII:6133619-6133699 1.6e-05 13_[+5]_59 chrIV:3854812-3854892 1.6e-05 7_[+5]_65 chrIII:445751-445831 1.6e-05 11_[+5]_61 chrII:4130431-4130511 1.6e-05 15_[+5]_57 chrI:14737416-14737496 4.8e-05 71_[+5]_1 chrI:1958522-1958602 4.8e-05 20_[+5]_52 chrX:10568536-10568616 4.8e-05 71_[+5]_1 chrIII:3916788-3916868 4.8e-05 18_[+5]_54 chrII:8547145-8547225 6.3e-05 25_[+5]_47 chrIII:13717748-13717828 6.3e-05 1_[+5]_71 chrX:2613212-2613292 8e-05 6_[+5]_66 chrII:3521517-3521597 8e-05 45_[+5]_27 chrX:3348032-3348112 8e-05 30_[+5]_42 chrIV:11026189-11026269 8e-05 56_[+5]_16 chrX:5812190-5812270 9.4e-05 47_[+5]_25 chrI:5316176-5316256 9.4e-05 51_[+5]_21 chrII:6853173-6853253 0.00013 15_[+5]_57 chrX:5165186-5165266 0.00013 65_[+5]_7 chrIII:4171162-4171242 0.00013 24_[+5]_48 chrX:6903053-6903133 0.00017 36_[+5]_36 chrII:4942505-4942585 0.00017 5_[+5]_67 chrV:14524331-14524411 0.00017 72_[+5] chrX:8156097-8156177 0.00017 58_[+5]_14 chrI:11910999-11911079 0.00019 51_[+5]_21 chrIV:11605085-11605165 0.00019 14_[+5]_58 chrIV:8253005-8253085 0.00023 40_[+5]_32 chrIV:14013863-14013943 0.00023 59_[+5]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGTGTGYG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGTGTGYG width=8 seqs=30 chrX:4606634-4606714 ( 13) TGTGTGTG 1 chrX:16147732-16147812 ( 59) TGTGTGTG 1 chrIII:8794867-8794947 ( 17) TGTGTGTG 1 chrIII:6133619-6133699 ( 14) TGTGTGTG 1 chrIV:3854812-3854892 ( 8) TGTGTGTG 1 chrIII:445751-445831 ( 12) TGTGTGTG 1 chrII:4130431-4130511 ( 16) TGTGTGTG 1 chrI:14737416-14737496 ( 72) TGTGTGCG 1 chrI:1958522-1958602 ( 21) TGTGTGCG 1 chrX:10568536-10568616 ( 72) AGTGTGTG 1 chrIII:3916788-3916868 ( 19) TGTGTGCG 1 chrII:8547145-8547225 ( 26) TGTGTGTC 1 chrIII:13717748-13717828 ( 2) TGTGTGTC 1 chrX:2613212-2613292 ( 7) AGTGTGCG 1 chrII:3521517-3521597 ( 46) AGTGTGCG 1 chrX:3348032-3348112 ( 31) AGTGTGCG 1 chrIV:11026189-11026269 ( 57) AGTGTGCG 1 chrX:5812190-5812270 ( 48) TGTGTGTA 1 chrI:5316176-5316256 ( 52) TGTGTGTA 1 chrII:6853173-6853253 ( 16) AGTGTGTC 1 chrX:5165186-5165266 ( 66) AGTGTGTC 1 chrIII:4171162-4171242 ( 25) TGTGTGCC 1 chrX:6903053-6903133 ( 37) AGTGTGTA 1 chrII:4942505-4942585 ( 6) TGTGTGCA 1 chrV:14524331-14524411 ( 73) TGTGTGCA 1 chrX:8156097-8156177 ( 59) TGTGTGTT 1 chrI:11910999-11911079 ( 52) AGTGTGCC 1 chrIV:11605085-11605165 ( 15) AGTGTGCC 1 chrIV:8253005-8253085 ( 41) AGTGTGTT 1 chrIV:14013863-14013943 ( 60) AGTGTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGTGTGYG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5224 E= 2.9e+000 72 -1155 -1155 131 -1155 -1155 195 -1155 -1155 -1155 -1155 204 -1155 -1155 195 -1155 -1155 -1155 -1155 204 -1155 -1155 195 -1155 -1155 65 -1155 131 -55 -13 95 -128 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGTGTGYG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.9e+000 0.400000 0.000000 0.000000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.000000 0.600000 0.166667 0.233333 0.500000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGTGTGYG MEME-5 regular expression -------------------------------------------------------------------------------- [TA]GTGTG[TC][GC] -------------------------------------------------------------------------------- Time 25.58 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:164-244 2.82e-01 80 chrM:9899-9979 9.56e-01 80 chrM:4947-5027 9.84e-01 80 chrM:5147-5227 8.98e-01 80 chrM:5952-6032 7.36e-01 80 chrM:9123-9203 9.92e-01 80 chrM:2104-2184 1.00e+00 80 chrIV:2998781-2998861 9.61e-01 80 chrII:4130431-4130511 9.45e-02 1_[+5(1.57e-05)]_[+5(1.57e-05)]_\ [+5(1.57e-05)]_55 chrV:13393516-13393596 9.25e-01 80 chrX:16944173-16944253 1.98e-01 80 chrIII:3499992-3500072 4.84e-01 80 chrI:1575697-1575777 9.11e-01 80 chrX:8156097-8156177 4.33e-01 80 chrI:1069270-1069350 6.27e-01 80 chrIII:1824644-1824724 9.68e-01 80 chrII:15264657-15264737 5.11e-01 80 chrIII:4948780-4948860 3.74e-01 80 chrII:7001564-7001644 7.90e-02 69_[+3(1.52e-05)]_3 chrIII:7642158-7642238 2.02e-04 14_[+1(1.57e-05)]_28_[+2(1.40e-05)]_\ 22 chrI:933432-933512 5.98e-01 80 chrX:5818330-5818410 6.27e-01 80 chrX:2879854-2879934 6.52e-01 80 chrV:12633193-12633273 9.95e-01 80 chrI:11584812-11584892 1.22e-01 28_[+1(4.74e-05)]_44 chrI:6136561-6136641 5.05e-02 42_[+3(1.52e-05)]_30 chrIII:445751-445831 5.89e-02 1_[+5(1.57e-05)]_[+5(1.57e-05)]_\ [+5(1.57e-05)]_55 chrX:15275242-15275322 8.25e-01 80 chrX:3994603-3994683 3.68e-01 80 chrV:14855766-14855846 2.79e-01 80 chrIV:3854812-3854892 5.06e-02 7_[+5(1.57e-05)]_65 chrII:7708717-7708797 5.48e-02 36_[+4(1.90e-05)]_36 chrX:14115675-14115755 2.09e-01 80 chrV:3587813-3587893 4.56e-01 80 chrX:5056378-5056458 8.00e-01 80 chrV:20241402-20241482 9.14e-01 80 chrX:7562674-7562754 4.87e-01 80 chrV:16622054-16622134 1.41e-02 19_[+1(1.57e-05)]_53 chrII:10549374-10549454 8.91e-01 80 chrIV:175827-175907 8.09e-01 80 chrIII:3664419-3664499 5.79e-01 80 chrIV:1388204-1388284 2.67e-04 26_[+1(1.57e-05)]_28_[+2(1.40e-05)]_\ 10 chrIII:13717748-13717828 1.51e-01 1_[+5(6.33e-05)]_71 chrI:5316176-5316256 1.92e-01 51_[+5(9.45e-05)]_21 chrIII:8650439-8650519 4.39e-01 80 chrIV:14013863-14013943 4.67e-01 80 chrI:12229303-12229383 4.01e-03 61_[+2(8.62e-05)]_11 chrX:12890274-12890354 1.61e-02 54_[+4(7.20e-05)]_18 chrI:13310295-13310375 7.50e-01 80 chrV:16700017-16700097 5.21e-01 80 chrI:2155489-2155569 3.79e-01 80 chrV:7230991-7231071 3.36e-01 80 chrIII:3916788-3916868 1.95e-03 16_[+5(4.78e-05)]_19_[+4(1.90e-05)]_\ 29 chrX:14804905-14804985 3.42e-01 80 chrIII:3249158-3249238 7.20e-01 80 chrI:13417394-13417474 3.74e-01 80 chrII:14248231-14248311 9.01e-01 80 chrIV:16388352-16388432 5.35e-01 80 chrIV:16382353-16382433 9.79e-01 80 chrII:5293380-5293460 1.36e-01 80 chrI:12065823-12065903 8.70e-01 80 chrIV:9191322-9191402 5.12e-01 80 chrI:9605742-9605822 9.17e-01 80 chrIV:3636626-3636706 5.07e-02 80 chrIV:14576646-14576726 2.07e-02 80 chrIV:620504-620584 3.67e-02 31_[+1(1.57e-05)]_41 chrIII:535311-535391 6.12e-01 80 chrV:6221569-6221649 8.07e-01 80 chrV:12780388-12780468 1.69e-03 12_[+1(9.31e-05)]_38_[+2(1.40e-05)]_\ 14 chrIII:8106674-8106754 9.20e-02 80 chrIV:3552151-3552231 8.38e-02 52_[+1(1.57e-05)]_20 chrIII:1122405-1122485 3.74e-03 35_[+3(3.14e-05)]_37 chrIV:16398321-16398401 2.77e-02 69_[+3(1.52e-05)]_3 chrIV:16399197-16399277 1.32e-01 6_[+4(7.20e-05)]_66 chrX:8646493-8646573 3.27e-01 80 chrV:10717224-10717304 9.48e-01 80 chrV:13962163-13962243 1.65e-01 80 chrIII:12399876-12399956 5.91e-01 80 chrI:6724489-6724569 9.60e-01 80 chrIII:10634224-10634304 3.53e-01 80 chrX:16928203-16928283 8.47e-01 80 chrX:16602615-16602695 5.67e-02 33_[+1(9.31e-05)]_39 chrIII:1218485-1218565 9.98e-01 80 chrX:5812395-5812475 1.44e-01 80 chrII:6565248-6565328 2.85e-03 6_[+3(1.52e-05)]_66 chrX:3914425-3914505 2.18e-01 80 chrII:11747030-11747110 9.48e-01 80 chrIII:3175164-3175244 7.77e-01 80 chrIV:11605085-11605165 3.10e-01 80 chrIII:10432239-10432319 6.56e-01 80 chrX:5707954-5708034 7.57e-01 80 chrI:14721580-14721660 2.76e-02 38_[+4(1.90e-05)]_34 chrX:17030551-17030631 4.65e-01 80 chrX:5319411-5319491 7.48e-01 80 chrX:12843640-12843720 8.62e-01 80 chrIII:12368910-12368990 9.28e-01 80 chrV:14524331-14524411 1.06e-01 80 chrIV:11026189-11026269 5.66e-02 56_[+5(7.98e-05)]_16 chrIII:4568692-4568772 8.15e-01 80 chrX:5812190-5812270 7.15e-02 47_[+5(9.45e-05)]_25 chrX:9296729-9296809 5.27e-01 80 chrIII:4171162-4171242 2.89e-03 80 chrII:9566207-9566287 3.38e-01 80 chrX:3348032-3348112 4.02e-02 30_[+5(7.98e-05)]_42 chrX:12452311-12452391 4.61e-01 80 chrX:1858772-1858852 4.10e-01 80 chrIV:9477744-9477824 3.60e-01 80 chrIII:4426751-4426831 9.75e-01 80 chrV:15505274-15505354 7.83e-01 80 chrX:8386226-8386306 1.20e-01 31_[+1(4.74e-05)]_41 chrI:11910999-11911079 9.43e-02 80 chrIII:1604669-1604749 7.47e-02 47_[+1(1.57e-05)]_25 chrI:2935735-2935815 1.27e-01 80 chrIV:16776095-16776175 1.59e-01 80 chrIII:6133619-6133699 1.25e-01 5_[+5(9.45e-05)]_[+5(1.57e-05)]_59 chrII:5577241-5577321 6.10e-02 10_[+2(1.40e-05)]_62 chrIV:842820-842900 2.06e-01 80 chrX:3694291-3694371 5.76e-01 80 chrV:53462-53542 7.97e-01 80 chrX:11643928-11644008 5.97e-01 80 chrIII:8794867-8794947 1.55e-03 16_[+5(1.57e-05)]_23_[+4(1.90e-05)]_\ 25 chrII:7756941-7757021 4.35e-02 58_[+2(7.21e-05)]_14 chrX:9637897-9637977 5.55e-01 80 chrIV:9316165-9316245 1.30e-01 24_[+4(7.20e-05)]_48 chrIII:1601610-1601690 7.29e-02 8_[+2(2.90e-05)]_64 chrII:8547145-8547225 2.14e-02 25_[+5(6.33e-05)]_47 chrII:14250407-14250487 3.21e-01 80 chrIV:11310792-11310872 5.45e-01 80 chrX:10568536-10568616 1.43e-01 71_[+5(4.78e-05)]_1 chrX:6286300-6286380 1.13e-03 27_[+3(1.52e-05)]_5_[+4(7.20e-05)]_\ 32 chrIV:143922-144002 8.08e-01 80 chrIII:8768074-8768154 4.14e-01 80 chrII:4942505-4942585 4.68e-02 80 chrX:13781636-13781716 1.87e-03 10_[+3(1.52e-05)]_39_[+1(4.74e-05)]_\ 15 chrI:11323397-11323477 2.43e-01 80 chrIII:8874327-8874407 4.04e-01 80 chrIV:4748467-4748547 8.92e-01 80 chrV:11610631-11610711 6.11e-02 5_[+4(5.50e-05)]_67 chrX:13121276-13121356 6.38e-01 80 chrIV:3524800-3524880 1.31e-02 72_[+1(4.74e-05)] chrIV:2805558-2805638 9.39e-01 80 chrX:11252586-11252666 5.66e-02 18_[+1(9.31e-05)]_54 chrIII:5555084-5555164 1.73e-02 52_[+4(1.90e-05)]_20 chrII:11547585-11547665 7.78e-01 80 chrII:3521517-3521597 4.42e-03 20_[+2(1.40e-05)]_17_[+5(7.98e-05)]_\ 27 chrIV:2639840-2639920 3.52e-03 19_[+2(1.40e-05)]_53 chrV:19126072-19126152 1.94e-01 80 chrX:16147732-16147812 8.73e-02 56_[+5(1.57e-05)]_4_[+5(4.78e-05)]_\ 4 chrIII:4369609-4369689 7.42e-01 80 chrII:3439481-3439561 5.27e-01 80 chrIII:5295000-5295080 5.70e-01 80 chrI:1958522-1958602 1.52e-01 20_[+5(4.78e-05)]_52 chrV:2674041-2674121 4.37e-01 80 chrX:1880794-1880874 6.26e-02 37_[+1(1.57e-05)]_35 chrX:15742064-15742144 1.33e-02 50_[+1(1.57e-05)]_22 chrIII:5211425-5211505 1.74e-01 80 chrIII:11371423-11371503 8.83e-02 80 chrX:9338039-9338119 7.48e-01 80 chrV:4731561-4731641 1.04e-03 38_[+4(1.90e-05)]_34 chrIII:89340-89420 8.33e-02 5_[+2(2.90e-05)]_67 chrX:12480544-12480624 1.85e-01 80 chrIII:6158712-6158792 7.08e-01 80 chrII:9774796-9774876 4.15e-01 80 chrI:9988912-9988992 9.57e-01 80 chrII:14635403-14635483 1.17e-01 80 chrIII:10624704-10624784 1.60e-01 52_[+1(9.31e-05)]_20 chrIII:9861637-9861717 3.07e-03 30_[+2(1.40e-05)]_42 chrI:9268901-9268981 1.44e-01 41_[+1(6.32e-05)]_31 chrIII:835925-836005 5.91e-01 80 chrV:6888974-6889054 1.85e-01 80 chrIII:9104229-9104309 1.08e-01 80 chrI:9267148-9267228 1.94e-01 80 chrV:20694119-20694199 2.93e-01 80 chrII:8107273-8107353 9.59e-02 39_[+2(4.24e-05)]_33 chrX:10963798-10963878 4.28e-01 80 chrV:15551795-15551875 1.29e-02 54_[+2(7.21e-05)]_18 chrX:1379598-1379678 1.47e-03 19_[+1(1.57e-05)]_53 chrI:2514285-2514365 1.30e-01 80 chrIII:4470951-4471031 6.54e-01 80 chrX:11644130-11644210 5.76e-01 80 chrX:15297482-15297562 3.89e-02 80 chrIII:6887699-6887779 3.27e-02 43_[+1(1.57e-05)]_29 chrI:10593162-10593242 1.40e-01 80 chrX:6371312-6371392 7.06e-01 80 chrIII:5602225-5602305 2.66e-01 80 chrX:6292287-6292367 2.60e-03 5_[+1(1.57e-05)]_21_[+4(7.20e-05)]_\ 38 chrX:12563779-12563859 2.69e-03 15_[+3(1.52e-05)]_57 chrI:13160993-13161073 9.58e-01 80 chrIV:8253005-8253085 6.89e-02 80 chrIV:683042-683122 9.23e-01 80 chrIV:6556782-6556862 6.75e-01 80 chrI:14737416-14737496 3.67e-02 49_[+5(4.78e-05)]_14_[+5(4.78e-05)]_\ 1 chrII:5292395-5292475 9.94e-01 80 chrV:16592254-16592334 1.52e-01 33_[+2(7.21e-05)]_39 chrI:11505546-11505626 1.53e-02 11_[+3(1.52e-05)]_61 chrV:9503531-9503611 1.17e-03 37_[+3(1.52e-05)]_5_[+4(7.20e-05)]_\ 22 chrX:3697749-3697829 1.00e-02 13_[+3(3.14e-05)]_59 chrX:12661215-12661295 1.00e-01 80 chrII:12494699-12494779 8.08e-03 48_[+3(1.52e-05)]_24 chrIII:8937742-8937822 6.48e-01 80 chrIV:13386156-13386236 8.06e-01 80 chrX:2549523-2549603 1.62e-02 19_[+1(9.31e-05)]_53 chrX:13512010-13512090 7.82e-01 80 chrX:7951655-7951735 2.24e-01 80 chrX:6593556-6593636 2.48e-02 46_[+3(1.52e-05)]_26 chrIII:1424461-1424541 9.12e-01 80 chrII:5782131-5782211 8.00e-01 80 chrX:489885-489965 3.04e-01 33_[+2(7.21e-05)]_39 chrII:14063353-14063433 9.72e-01 80 chrX:9467771-9467851 2.77e-01 80 chrIII:10461278-10461358 5.75e-02 80 chrX:4606634-4606714 5.17e-02 [+5(1.57e-05)]_[+5(1.57e-05)]_\ [+5(1.57e-05)]_56 chrV:19643215-19643295 7.60e-03 11_[+2(2.90e-05)]_61 chrII:5105247-5105327 7.19e-04 16_[+4(3.72e-05)]_4_[+2(1.40e-05)]_\ 44 chrX:12106160-12106240 2.62e-02 1_[+1(1.57e-05)]_71 chrIII:8678514-8678594 5.62e-02 80 chrII:5661155-5661235 2.20e-02 [+4(1.90e-05)]_72 chrII:7200208-7200288 3.50e-02 70_[+4(3.72e-05)]_2 chrX:11757835-11757915 1.76e-03 10_[+1(1.57e-05)]_40_[+2(1.40e-05)]_\ 14 chrX:3371452-3371532 9.57e-01 80 chrII:11484759-11484839 5.08e-03 33_[+4(8.99e-05)]_39 chrII:7184057-7184137 3.51e-02 56_[+4(1.90e-05)]_16 chrX:5165186-5165266 1.36e-01 80 chrIV:9511510-9511590 7.54e-01 80 chrX:15181552-15181632 4.20e-01 80 chrII:8075398-8075478 8.86e-02 80 chrI:8259526-8259606 2.15e-01 80 chrII:5032792-5032872 2.11e-01 80 chrI:1836738-1836818 8.64e-01 80 chrX:2227157-2227237 2.71e-01 80 chrX:10188512-10188592 5.40e-01 80 chrIV:12594742-12594822 1.87e-03 4_[+3(1.52e-05)]_39_[+1(4.74e-05)]_\ 21 chrV:9970281-9970361 1.33e-02 33_[+4(1.90e-05)]_39 chrX:7501010-7501090 9.84e-01 80 chrV:15873927-15874007 2.40e-03 [+1(1.57e-05)]_72 chrIV:1420255-1420335 2.13e-02 52_[+4(1.90e-05)]_20 chrII:6853173-6853253 1.87e-01 80 chrX:6903053-6903133 5.01e-02 80 chrIV:11549865-11549945 1.22e-02 9_[+1(1.57e-05)]_63 chrIII:9619305-9619385 5.56e-01 80 chrIII:4689804-4689884 4.75e-02 11_[+2(1.40e-05)]_61 chrI:2410121-2410201 3.17e-03 56_[+1(6.32e-05)]_16 chrIV:14838340-14838420 5.22e-01 80 chrIII:8109570-8109650 1.39e-01 80 chrIV:11474210-11474290 4.83e-02 33_[+2(4.24e-05)]_39 chrIV:1595945-1596025 7.51e-01 80 chrX:16634864-16634944 6.70e-02 16_[+2(1.40e-05)]_56 chrI:6105766-6105846 4.58e-01 80 chrIV:8375529-8375609 3.32e-02 62_[+2(1.40e-05)]_10 chrX:2613212-2613292 5.85e-02 6_[+5(7.98e-05)]_66 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************