******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/fkh-8.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:2984155-2984235 1.0000 80 chrIV:4211866-4211946 1.0000 80 chrIII:12858673-12858753 1.0000 80 chrX:5552748-5552828 1.0000 80 chrIII:31775-31855 1.0000 80 chrI:4577721-4577801 1.0000 80 chrII:8190780-8190860 1.0000 80 chrX:7369940-7370020 1.0000 80 chrII:14606997-14607077 1.0000 80 chrI:10920882-10920962 1.0000 80 chrV:1654947-1655027 1.0000 80 chrIV:2736121-2736201 1.0000 80 chrII:9144501-9144581 1.0000 80 chrX:12149797-12149877 1.0000 80 chrV:3873184-3873264 1.0000 80 chrV:19668369-19668449 1.0000 80 chrII:4248680-4248760 1.0000 80 chrX:14720112-14720192 1.0000 80 chrI:3352282-3352362 1.0000 80 chrII:11453798-11453878 1.0000 80 chrX:16731311-16731391 1.0000 80 chrX:10447125-10447205 1.0000 80 chrV:6067253-6067333 1.0000 80 chrX:5512870-5512950 1.0000 80 chrII:6342613-6342693 1.0000 80 chrX:6245703-6245783 1.0000 80 chrIV:2212951-2213031 1.0000 80 chrV:7901386-7901466 1.0000 80 chrV:5652075-5652155 1.0000 80 chrI:8349484-8349564 1.0000 80 chrIII:5517599-5517679 1.0000 80 chrV:6995477-6995557 1.0000 80 chrII:10736008-10736088 1.0000 80 chrIV:5198621-5198701 1.0000 80 chrV:8250525-8250605 1.0000 80 chrIV:8697447-8697527 1.0000 80 chrI:10797902-10797982 1.0000 80 chrIV:5289120-5289200 1.0000 80 chrV:9705164-9705244 1.0000 80 chrI:6610391-6610471 1.0000 80 chrIV:3199218-3199298 1.0000 80 chrII:6779237-6779317 1.0000 80 chrI:11692278-11692358 1.0000 80 chrX:3581948-3582028 1.0000 80 chrIII:9587618-9587698 1.0000 80 chrX:17318399-17318479 1.0000 80 chrX:5363978-5364058 1.0000 80 chrII:12260719-12260799 1.0000 80 chrI:5763795-5763875 1.0000 80 chrIII:8322836-8322916 1.0000 80 chrII:12489815-12489895 1.0000 80 chrIV:829252-829332 1.0000 80 chrII:11722316-11722396 1.0000 80 chrII:3528386-3528466 1.0000 80 chrII:2335063-2335143 1.0000 80 chrIV:7382143-7382223 1.0000 80 chrX:10589657-10589737 1.0000 80 chrIII:3145733-3145813 1.0000 80 chrII:7345354-7345434 1.0000 80 chrX:9957584-9957664 1.0000 80 chrIV:7554496-7554576 1.0000 80 chrIV:9879055-9879135 1.0000 80 chrX:8874740-8874820 1.0000 80 chrX:13710680-13710760 1.0000 80 chrX:9437066-9437146 1.0000 80 chrIII:8436416-8436496 1.0000 80 chrI:5100690-5100770 1.0000 80 chrI:8535978-8536058 1.0000 80 chrV:15693829-15693909 1.0000 80 chrX:15800202-15800282 1.0000 80 chrIV:14557805-14557885 1.0000 80 chrII:6502-6582 1.0000 80 chrV:7971531-7971611 1.0000 80 chrIV:7156525-7156605 1.0000 80 chrIII:6058699-6058779 1.0000 80 chrII:5883873-5883953 1.0000 80 chrX:6353933-6354013 1.0000 80 chrV:5016866-5016946 1.0000 80 chrIII:10604469-10604549 1.0000 80 chrX:14492601-14492681 1.0000 80 chrV:1487434-1487514 1.0000 80 chrX:2819065-2819145 1.0000 80 chrX:763527-763607 1.0000 80 chrIII:3804446-3804526 1.0000 80 chrX:6639863-6639943 1.0000 80 chrIV:9510637-9510717 1.0000 80 chrV:14935287-14935367 1.0000 80 chrV:9134126-9134206 1.0000 80 chrV:4977713-4977793 1.0000 80 chrIII:13686473-13686553 1.0000 80 chrV:10234676-10234756 1.0000 80 chrV:14532518-14532598 1.0000 80 chrI:12603073-12603153 1.0000 80 chrIV:12813628-12813708 1.0000 80 chrIV:9725622-9725702 1.0000 80 chrII:10720158-10720238 1.0000 80 chrV:9055836-9055916 1.0000 80 chrIV:3774319-3774399 1.0000 80 chrX:8798459-8798539 1.0000 80 chrIII:10035933-10036013 1.0000 80 chrX:5130563-5130643 1.0000 80 chrI:1006004-1006084 1.0000 80 chrX:7977609-7977689 1.0000 80 chrV:13763884-13763964 1.0000 80 chrX:8963655-8963735 1.0000 80 chrII:747886-747966 1.0000 80 chrV:396477-396557 1.0000 80 chrV:1626165-1626245 1.0000 80 chrIII:7090719-7090799 1.0000 80 chrII:13964499-13964579 1.0000 80 chrV:10930142-10930222 1.0000 80 chrX:6654820-6654900 1.0000 80 chrI:5448395-5448475 1.0000 80 chrII:11376186-11376266 1.0000 80 chrIII:4220953-4221033 1.0000 80 chrV:3856074-3856154 1.0000 80 chrII:5889465-5889545 1.0000 80 chrX:2819910-2819990 1.0000 80 chrII:7770402-7770482 1.0000 80 chrX:948035-948115 1.0000 80 chrX:15662706-15662786 1.0000 80 chrIII:10762304-10762384 1.0000 80 chrI:8205259-8205339 1.0000 80 chrV:404377-404457 1.0000 80 chrX:11982253-11982333 1.0000 80 chrV:18783640-18783720 1.0000 80 chrX:5883718-5883798 1.0000 80 chrII:15175318-15175398 1.0000 80 chrI:7293733-7293813 1.0000 80 chrV:9047864-9047944 1.0000 80 chrIV:6879942-6880022 1.0000 80 chrX:9928154-9928234 1.0000 80 chrV:5507909-5507989 1.0000 80 chrV:10249222-10249302 1.0000 80 chrII:10379746-10379826 1.0000 80 chrIV:8127579-8127659 1.0000 80 chrII:5965139-5965219 1.0000 80 chrX:1906137-1906217 1.0000 80 chrII:5334744-5334824 1.0000 80 chrX:514217-514297 1.0000 80 chrV:4794450-4794530 1.0000 80 chrII:335012-335092 1.0000 80 chrIV:6752717-6752797 1.0000 80 chrIV:1118760-1118840 1.0000 80 chrX:8961630-8961710 1.0000 80 chrIV:16659605-16659685 1.0000 80 chrI:5311130-5311210 1.0000 80 chrIV:7840068-7840148 1.0000 80 chrV:10924979-10925059 1.0000 80 chrV:20402998-20403078 1.0000 80 chrV:1149893-1149973 1.0000 80 chrV:13253013-13253093 1.0000 80 chrII:12708111-12708191 1.0000 80 chrII:6107732-6107812 1.0000 80 chrV:721390-721470 1.0000 80 chrIV:2734787-2734867 1.0000 80 chrIII:8123287-8123367 1.0000 80 chrX:8800053-8800133 1.0000 80 chrV:11010935-11011015 1.0000 80 chrII:1640670-1640750 1.0000 80 chrX:3339988-3340068 1.0000 80 chrV:1120273-1120353 1.0000 80 chrX:5174394-5174474 1.0000 80 chrIV:10890226-10890306 1.0000 80 chrII:10730879-10730959 1.0000 80 chrII:5895691-5895771 1.0000 80 chrI:10037183-10037263 1.0000 80 chrX:12885038-12885118 1.0000 80 chrIV:14274992-14275072 1.0000 80 chrV:9259463-9259543 1.0000 80 chrIV:5904103-5904183 1.0000 80 chrIV:759490-759570 1.0000 80 chrV:618097-618177 1.0000 80 chrX:12516537-12516617 1.0000 80 chrII:9115794-9115874 1.0000 80 chrII:8157145-8157225 1.0000 80 chrV:6005710-6005790 1.0000 80 chrX:5385903-5385983 1.0000 80 chrIII:10607287-10607367 1.0000 80 chrX:5387760-5387840 1.0000 80 chrII:12488984-12489064 1.0000 80 chrIII:5641056-5641136 1.0000 80 chrV:20139468-20139548 1.0000 80 chrV:3870532-3870612 1.0000 80 chrV:9366881-9366961 1.0000 80 chrV:6630941-6631021 1.0000 80 chrIII:10150849-10150929 1.0000 80 chrIV:15908407-15908487 1.0000 80 chrV:7970652-7970732 1.0000 80 chrI:6434635-6434715 1.0000 80 chrX:830313-830393 1.0000 80 chrIV:9673855-9673935 1.0000 80 chrX:8566812-8566892 1.0000 80 chrIII:4495850-4495930 1.0000 80 chrIII:7118637-7118717 1.0000 80 chrIV:5580748-5580828 1.0000 80 chrII:7977696-7977776 1.0000 80 chrX:2144401-2144481 1.0000 80 chrI:8538355-8538435 1.0000 80 chrII:6311611-6311691 1.0000 80 chrX:13378674-13378754 1.0000 80 chrIII:8122107-8122187 1.0000 80 chrIV:1739078-1739158 1.0000 80 chrX:3583591-3583671 1.0000 80 chrI:6671456-6671536 1.0000 80 chrII:14590791-14590871 1.0000 80 chrV:6765074-6765154 1.0000 80 chrV:10925815-10925895 1.0000 80 chrIV:5036547-5036627 1.0000 80 chrX:11969286-11969366 1.0000 80 chrX:844825-844905 1.0000 80 chrIII:482876-482956 1.0000 80 chrI:5018105-5018185 1.0000 80 chrI:3628263-3628343 1.0000 80 chrV:3042656-3042736 1.0000 80 chrV:9364382-9364462 1.0000 80 chrII:9263913-9263993 1.0000 80 chrV:12773988-12774068 1.0000 80 chrV:3877371-3877451 1.0000 80 chrIV:9722162-9722242 1.0000 80 chrIII:13716406-13716486 1.0000 80 chrV:9606467-9606547 1.0000 80 chrV:2774189-2774269 1.0000 80 chrV:6229123-6229203 1.0000 80 chrIV:9810704-9810784 1.0000 80 chrI:11949408-11949488 1.0000 80 chrX:11405252-11405332 1.0000 80 chrIV:16658876-16658956 1.0000 80 chrIII:12844953-12845033 1.0000 80 chrX:2596746-2596826 1.0000 80 chrII:8394277-8394357 1.0000 80 chrV:6631998-6632078 1.0000 80 chrV:5301385-5301465 1.0000 80 chrIV:3832183-3832263 1.0000 80 chrI:6708768-6708848 1.0000 80 chrI:9753256-9753336 1.0000 80 chrX:15381101-15381181 1.0000 80 chrIV:9053593-9053673 1.0000 80 chrIV:10395259-10395339 1.0000 80 chrV:9260578-9260658 1.0000 80 chrX:9956721-9956801 1.0000 80 chrI:3627176-3627256 1.0000 80 chrV:9361666-9361746 1.0000 80 chrV:6778603-6778683 1.0000 80 chrII:6745938-6746018 1.0000 80 chrV:6031730-6031810 1.0000 80 chrIV:3196356-3196436 1.0000 80 chrI:10167592-10167672 1.0000 80 chrIV:1466899-1466979 1.0000 80 chrI:9860252-9860332 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_fkh-8/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/fkh-8.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.303 C 0.199 G 0.2 T 0.298 Background letter frequencies (from file dataset with add-one prior applied): A 0.303 C 0.199 G 0.2 T 0.298 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTCTSAGA MEME-1 width = 8 sites = 32 llr = 271 E-value = 7.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCTSAGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::7:a pos.-specific C ::9:6:2: probability G ::::3:8: matrix T aa1a23:: bits 2.3 2.1 1.9 **** 1.6 **** ** Relative 1.4 **** ** Entropy 1.2 **** ** (12.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCTCAGA consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTSAGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2596746-2596826 23 1.92e-05 TCATTGCATT TTCTCAGA ATTACTCATA chrIII:13716406-13716486 69 1.92e-05 CGTGACTCAC TTCTCAGA ACTA chrV:10925815-10925895 59 1.92e-05 TTCGAAATAT TTCTCAGA GTTATAAAGT chrII:7977696-7977776 38 1.92e-05 TTCAAAGAAA TTCTCAGA AATAAAATTT chrIV:5580748-5580828 44 1.92e-05 GTGTCTCAAT TTCTCAGA ATATGCAACT chrV:1626165-1626245 63 1.92e-05 GCACATAACC TTCTCAGA ACTTGGTTTT chrX:5130563-5130643 65 1.92e-05 CAAAAAGGAA TTCTCAGA TTCCCAGA chrIV:3199218-3199298 10 1.92e-05 AATTTCCCA TTCTCAGA ACTTTGGTGT chrX:7369940-7370020 11 1.92e-05 TCCACCAAAA TTCTCAGA AAGGGCAATT chrI:10167592-10167672 35 3.86e-05 GAAATGTTTA TTCTGAGA AAAGAAATAC chrII:5965139-5965219 33 3.86e-05 ATTGAATGTG TTCTGAGA AAACAGGGGT chrV:404377-404457 68 3.86e-05 CGAGCACAAA TTCTGAGA ATTGA chrV:3856074-3856154 53 3.86e-05 TGATTTGTAC TTCTGAGA AAGACATAAA chrV:9134126-9134206 31 5.75e-05 TAATTTTTCT TTCTCTGA ATCTCTACGC chrV:19668369-19668449 66 5.75e-05 CCTTTTATGT TTCTCTGA AAACATG chrV:6229123-6229203 46 7.65e-05 CGGGTGGGAA TTCTGTGA AAAATGAGCA chrIV:14274992-14275072 53 7.65e-05 GTCAGATATT TTCTGTGA AATCTGCAAC chrIII:31775-31855 29 7.65e-05 CGTGAGCTGC TTCTGTGA CGGAGTATGT chrIV:4211866-4211946 72 7.65e-05 GTGCACAATT TTCTGTGA T chrV:3042656-3042736 71 9.57e-05 ATCATACAAA TTCTCACA CA chrX:9928154-9928234 51 9.57e-05 AAAGCAATGT TTCTCACA AGTTGCCCCT chrX:11405252-11405332 53 1.24e-04 TGAGCACCAG TTCTTAGA ACAGAAGTAT chrX:7977609-7977689 63 1.24e-04 GATTATAGGT TTCTTAGA AAACGAGTGA chrII:5883873-5883953 1 1.24e-04 . TTCTTAGA AATTCGTTTC chrV:8250525-8250605 44 1.24e-04 TATAACTGAA TTCTTAGA AAACGAGAAA chrV:1149893-1149973 73 1.44e-04 gcgcactgct ttctgaca chrX:948035-948115 53 1.63e-04 TCAGGCCAAT TTCTCTCA GTTTCTAAAA chrII:10720158-10720238 60 1.63e-04 AAATCTCTAT TTCTCTCA TACGTACTTC chrII:11376186-11376266 48 1.91e-04 TTTGAGCTCA TTCTTTGA ATCTATATCA chrII:6745938-6746018 63 2.20e-04 GGTGAGATTA TTTTCAGA TGTCCTATAA chrX:6639863-6639943 51 2.20e-04 CCACTATCAA TTTTCAGA AAAAGTAATT chrIII:10604469-10604549 56 2.20e-04 CCTCTCGATC TTTTCAGA ACGAGCAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTSAGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2596746-2596826 1.9e-05 22_[+1]_50 chrIII:13716406-13716486 1.9e-05 68_[+1]_4 chrV:10925815-10925895 1.9e-05 58_[+1]_14 chrII:7977696-7977776 1.9e-05 37_[+1]_35 chrIV:5580748-5580828 1.9e-05 43_[+1]_29 chrV:1626165-1626245 1.9e-05 62_[+1]_10 chrX:5130563-5130643 1.9e-05 64_[+1]_8 chrIV:3199218-3199298 1.9e-05 9_[+1]_63 chrX:7369940-7370020 1.9e-05 10_[+1]_62 chrI:10167592-10167672 3.9e-05 34_[+1]_38 chrII:5965139-5965219 3.9e-05 32_[+1]_40 chrV:404377-404457 3.9e-05 67_[+1]_5 chrV:3856074-3856154 3.9e-05 52_[+1]_20 chrV:9134126-9134206 5.8e-05 30_[+1]_42 chrV:19668369-19668449 5.8e-05 65_[+1]_7 chrV:6229123-6229203 7.7e-05 45_[+1]_27 chrIV:14274992-14275072 7.7e-05 52_[+1]_20 chrIII:31775-31855 7.7e-05 28_[+1]_44 chrIV:4211866-4211946 7.7e-05 71_[+1]_1 chrV:3042656-3042736 9.6e-05 70_[+1]_2 chrX:9928154-9928234 9.6e-05 50_[+1]_22 chrX:11405252-11405332 0.00012 52_[+1]_20 chrX:7977609-7977689 0.00012 62_[+1]_10 chrII:5883873-5883953 0.00012 [+1]_72 chrV:8250525-8250605 0.00012 43_[+1]_29 chrV:1149893-1149973 0.00014 72_[+1] chrX:948035-948115 0.00016 52_[+1]_20 chrII:10720158-10720238 0.00016 59_[+1]_13 chrII:11376186-11376266 0.00019 47_[+1]_25 chrII:6745938-6746018 0.00022 62_[+1]_10 chrX:6639863-6639943 0.00022 50_[+1]_22 chrIII:10604469-10604549 0.00022 55_[+1]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTSAGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCTSAGA width=8 seqs=32 chrX:2596746-2596826 ( 23) TTCTCAGA 1 chrIII:13716406-13716486 ( 69) TTCTCAGA 1 chrV:10925815-10925895 ( 59) TTCTCAGA 1 chrII:7977696-7977776 ( 38) TTCTCAGA 1 chrIV:5580748-5580828 ( 44) TTCTCAGA 1 chrV:1626165-1626245 ( 63) TTCTCAGA 1 chrX:5130563-5130643 ( 65) TTCTCAGA 1 chrIV:3199218-3199298 ( 10) TTCTCAGA 1 chrX:7369940-7370020 ( 11) TTCTCAGA 1 chrI:10167592-10167672 ( 35) TTCTGAGA 1 chrII:5965139-5965219 ( 33) TTCTGAGA 1 chrV:404377-404457 ( 68) TTCTGAGA 1 chrV:3856074-3856154 ( 53) TTCTGAGA 1 chrV:9134126-9134206 ( 31) TTCTCTGA 1 chrV:19668369-19668449 ( 66) TTCTCTGA 1 chrV:6229123-6229203 ( 46) TTCTGTGA 1 chrIV:14274992-14275072 ( 53) TTCTGTGA 1 chrIII:31775-31855 ( 29) TTCTGTGA 1 chrIV:4211866-4211946 ( 72) TTCTGTGA 1 chrV:3042656-3042736 ( 71) TTCTCACA 1 chrX:9928154-9928234 ( 51) TTCTCACA 1 chrX:11405252-11405332 ( 53) TTCTTAGA 1 chrX:7977609-7977689 ( 63) TTCTTAGA 1 chrII:5883873-5883953 ( 1) TTCTTAGA 1 chrV:8250525-8250605 ( 44) TTCTTAGA 1 chrV:1149893-1149973 ( 73) TTCTGACA 1 chrX:948035-948115 ( 53) TTCTCTCA 1 chrII:10720158-10720238 ( 60) TTCTCTCA 1 chrII:11376186-11376266 ( 48) TTCTTTGA 1 chrII:6745938-6746018 ( 63) TTTTCAGA 1 chrX:6639863-6639943 ( 51) TTTTCAGA 1 chrIII:10604469-10604549 ( 56) TTTTCAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTSAGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.15308 E= 7.2e-002 -1164 -1164 -1164 175 -1164 -1164 -1164 175 -1164 218 -1164 -167 -1164 -1164 -1164 175 -1164 150 49 -93 125 -1164 -1164 -8 -1164 -35 208 -1164 172 -1164 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTSAGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 7.2e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.906250 0.000000 0.093750 0.000000 0.000000 0.000000 1.000000 0.000000 0.562500 0.281250 0.156250 0.718750 0.000000 0.000000 0.281250 0.000000 0.156250 0.843750 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTSAGA MEME-1 regular expression -------------------------------------------------------------------------------- TTCT[CG][AT]GA -------------------------------------------------------------------------------- Time 8.61 secs. ******************************************************************************** ******************************************************************************** MOTIF WGAAAAAR MEME-2 width = 8 sites = 64 llr = 453 E-value = 7.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGAAAAAR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 7:a9aa75 pos.-specific C :1:::::: probability G :9:1::14 matrix T 3:::::21 bits 2.3 2.1 * 1.9 * 1.6 ** ** Relative 1.4 ***** Entropy 1.2 ***** (10.2 bits) 0.9 ***** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAAAAAA consensus T TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGAAAAAR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:8394277-8394357 56 3.10e-05 AAAGGAAGAG AGAAAAAG GAAGGAGGAG chrIV:16658876-16658956 14 3.10e-05 GCTCGCGTGG AGAAAAAG AAAATAACTG chrIV:2734787-2734867 10 3.10e-05 AAAATGTCC AGAAAAAG CGAAGAGAGC chrII:13964499-13964579 22 3.10e-05 GTTTTCGAAT AGAAAAAG AGCAAAACGT chrIV:9725622-9725702 29 3.10e-05 TCCACTTATC AGAAAAAG AGGCATGAGA chrX:14492601-14492681 45 3.10e-05 AAATTTTCCC AGAAAAAG CAAATAACTC chrIII:5517599-5517679 6 3.10e-05 TCAAA AGAAAAAG AGATTCAGAG chrIV:10395259-10395339 64 7.78e-05 ATATCCGACT AGAAAAAA AAAATGAAA chrI:9753256-9753336 67 7.78e-05 AAACTTGAAT AGAAAAAA GAATTC chrX:13378674-13378754 26 7.78e-05 GCACACCAAC AGAAAAAA AAACACTCAG chrIII:4495850-4495930 67 7.78e-05 GAGTCACATG AGAAAAAA TAAAGA chrIV:1118760-1118840 1 7.78e-05 . AGAAAAAA AATTTCGCCG chrIV:6752717-6752797 50 7.78e-05 TGGGAAATGC AGAAAAAA AAGAAATGCA chrIII:4220953-4221033 28 7.78e-05 GGGGATTCGA AGAAAAAA GATTTAAGAT chrIV:12813628-12813708 73 7.78e-05 CACGAGTATG AGAAAAAA chrV:14935287-14935367 47 7.78e-05 TCATTAACGA AGAAAAAA TTTGTGTACT chrIII:8436416-8436496 29 7.78e-05 AAGAAAAGAA AGAAAAAA CAGCCAATTG chrV:8250525-8250605 57 7.78e-05 TTAGAAAACG AGAAAAAA CCCTGATTAC chrII:4248680-4248760 48 7.78e-05 TATTAGCCGA AGAAAAAA AGAGAAAATT chrV:1654947-1655027 5 7.78e-05 ACCT AGAAAAAA GATACTTGTA chrIV:7554496-7554576 18 1.08e-04 AAATTTATGT TGAAAAAG gaaaaaagag chrIV:14274992-14275072 14 1.54e-04 GTCAGTTCTA TGAAAAAA ACCAAGGCGG chrX:9957584-9957664 36 1.54e-04 GAAACTGATG TGAAAAAA AAATTATTGA chrII:11722316-11722396 42 1.54e-04 CGTGCAAAAG TGAAAAAA AAAACAGAAG chrII:8190780-8190860 47 1.54e-04 AAAATAACAT TGAAAAAA ATGAAATGAG chrV:10925815-10925895 34 1.85e-04 GAGAGGCGAA AGAAAATG GAAAGATTTC chrV:13253013-13253093 16 1.85e-04 CATACCTAAA AGAAAATG ACGTGGAATT chrI:8205259-8205339 4 1.85e-04 ACA AGAAAATG TTTTCGCATC chrX:12885038-12885118 17 2.31e-04 TTTCCATATG AGAAAATA CTCAGAAAAG chrIV:6879942-6880022 40 2.77e-04 TGATTTTTAT AGAAAAAT ATTAGTAATG chrV:10234676-10234756 63 2.77e-04 TATTGTTAAC AGAAAAAT GAATTATCTA chrIV:829252-829332 13 2.77e-04 CGTGCTTTCC AGAAAAAT CCTCTATTCA chrI:6671456-6671536 65 2.98e-04 AATTGTGGAG AGAGAAAG ATGAAGGG chrI:6610391-6610471 18 2.98e-04 AAACAAAAGC AGAGAAAG CTGATTATTA chrIV:9810704-9810784 31 3.58e-04 GCAAAAAGTC TGAAAATG AAATTGTTTG chrIII:482876-482956 3 3.58e-04 AG TGAAAATG TCATTTTCTC chrIII:10150849-10150929 53 3.58e-04 AAGAGGATTT AGAGAAAA ATGACTCGGC chrV:9259463-9259543 38 3.58e-04 TCTGCAAACG TGAAAATG AGCTTTGATT chrV:20402998-20403078 1 3.58e-04 . AGAGAAAA GCGCGCTTGT chrX:5130563-5130643 8 3.58e-04 TTGGACA TGAAAATG TACAAAGAAT chrIV:8697447-8697527 19 3.58e-04 CAGGAATTAT TGAAAATG TGATCACATT chrV:19668369-19668449 7 3.58e-04 ATTCTA TGAAAATG TGGGCTTAAT chrX:15381101-15381181 56 4.04e-04 TCCCGTGTTC TGAAAATA ACCAACCCCC chrX:2144401-2144481 25 4.04e-04 TAAATGTGTA TGAAAATA ATGTTATGCG chrIII:8123287-8123367 66 4.04e-04 TTAGAGTTCT TGAAAATA TAACGAA chrII:10736008-10736088 58 4.24e-04 GAGAATTCGA AGAAAAGG TAGTAGAAGG chrV:9361666-9361746 56 5.01e-04 AATATTGGTG AGAAAAGA GTTAGAGCAA chrII:6311611-6311691 38 5.01e-04 GATTTTCGAA AGAAAAGA AATATCATGC chrI:10037183-10037263 25 5.01e-04 GGAAAACAGA TGAAAAAT GCGGGGCATG chrII:10730879-10730959 17 5.01e-04 TCCAAGAAAC TGAAAAAT CATCAAATGG chrV:10249222-10249302 70 5.01e-04 CTTTTCCGGC TGAAAAAT CTT chrII:747886-747966 4 5.01e-04 CCG TGAAAAAT TGGAGTTTCT chrI:5763795-5763875 43 5.01e-04 ACGTCAAAAG TGAAAAAT TAAGTTAATG chrV:6067253-6067333 63 5.01e-04 ATTCATTCGG AGAAAAGA TGATTTTATT chrX:16731311-16731391 64 5.21e-04 ACTGGGACTC TGAGAAAG ATCTCTTCA chrV:3873184-3873264 70 5.21e-04 AGCGACTACG TGAGAAAG TGT chrX:11969286-11969366 26 6.78e-04 AGACGCAGAC ACAAAAAG AGCTCAAAAA chrII:335012-335092 68 7.45e-04 TGGCTTCTTC AGAGAATG ATTCA chrIII:13686473-13686553 63 7.45e-04 AATAATGGTT ACAAAAAA TGAAGTACAA chrIV:3199218-3199298 51 7.45e-04 GTATCACAGC ACAAAAAA TGATAAGCTG chrX:12516537-12516617 20 8.57e-04 TGACATTCCC AGCAAAAA CCGAGACCAG chrIV:10890226-10890306 43 8.57e-04 TTGCTCATTG AGCAAAAA ATTAGAGAGA chrX:514217-514297 65 9.31e-04 CCGGATACAA TCAAAAAG ATGGATTA chrIV:15908407-15908487 39 1.11e-03 TTCAGCAGAA AGAAAACA CTAATTGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGAAAAAR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:8394277-8394357 3.1e-05 55_[+2]_17 chrIV:16658876-16658956 3.1e-05 13_[+2]_59 chrIV:2734787-2734867 3.1e-05 9_[+2]_63 chrII:13964499-13964579 3.1e-05 21_[+2]_51 chrIV:9725622-9725702 3.1e-05 28_[+2]_44 chrX:14492601-14492681 3.1e-05 44_[+2]_28 chrIII:5517599-5517679 3.1e-05 5_[+2]_67 chrIV:10395259-10395339 7.8e-05 63_[+2]_9 chrI:9753256-9753336 7.8e-05 66_[+2]_6 chrX:13378674-13378754 7.8e-05 25_[+2]_47 chrIII:4495850-4495930 7.8e-05 66_[+2]_6 chrIV:1118760-1118840 7.8e-05 [+2]_72 chrIV:6752717-6752797 7.8e-05 49_[+2]_23 chrIII:4220953-4221033 7.8e-05 27_[+2]_45 chrIV:12813628-12813708 7.8e-05 72_[+2] chrV:14935287-14935367 7.8e-05 46_[+2]_26 chrIII:8436416-8436496 7.8e-05 28_[+2]_44 chrV:8250525-8250605 7.8e-05 56_[+2]_16 chrII:4248680-4248760 7.8e-05 47_[+2]_25 chrV:1654947-1655027 7.8e-05 4_[+2]_68 chrIV:7554496-7554576 0.00011 17_[+2]_55 chrIV:14274992-14275072 0.00015 13_[+2]_59 chrX:9957584-9957664 0.00015 35_[+2]_37 chrII:11722316-11722396 0.00015 41_[+2]_31 chrII:8190780-8190860 0.00015 46_[+2]_26 chrV:10925815-10925895 0.00018 33_[+2]_39 chrV:13253013-13253093 0.00018 15_[+2]_57 chrI:8205259-8205339 0.00018 3_[+2]_69 chrX:12885038-12885118 0.00023 16_[+2]_56 chrIV:6879942-6880022 0.00028 39_[+2]_33 chrV:10234676-10234756 0.00028 62_[+2]_10 chrIV:829252-829332 0.00028 12_[+2]_60 chrI:6671456-6671536 0.0003 64_[+2]_8 chrI:6610391-6610471 0.0003 17_[+2]_55 chrIV:9810704-9810784 0.00036 30_[+2]_42 chrIII:482876-482956 0.00036 2_[+2]_70 chrIII:10150849-10150929 0.00036 52_[+2]_20 chrV:9259463-9259543 0.00036 37_[+2]_35 chrV:20402998-20403078 0.00036 [+2]_72 chrX:5130563-5130643 0.00036 7_[+2]_65 chrIV:8697447-8697527 0.00036 18_[+2]_54 chrV:19668369-19668449 0.00036 6_[+2]_66 chrX:15381101-15381181 0.0004 55_[+2]_17 chrX:2144401-2144481 0.0004 24_[+2]_48 chrIII:8123287-8123367 0.0004 65_[+2]_7 chrII:10736008-10736088 0.00042 57_[+2]_15 chrV:9361666-9361746 0.0005 55_[+2]_17 chrII:6311611-6311691 0.0005 37_[+2]_35 chrI:10037183-10037263 0.0005 24_[+2]_48 chrII:10730879-10730959 0.0005 16_[+2]_56 chrV:10249222-10249302 0.0005 69_[+2]_3 chrII:747886-747966 0.0005 3_[+2]_69 chrI:5763795-5763875 0.0005 42_[+2]_30 chrV:6067253-6067333 0.0005 62_[+2]_10 chrX:16731311-16731391 0.00052 63_[+2]_9 chrV:3873184-3873264 0.00052 69_[+2]_3 chrX:11969286-11969366 0.00068 25_[+2]_47 chrII:335012-335092 0.00074 67_[+2]_5 chrIII:13686473-13686553 0.00074 62_[+2]_10 chrIV:3199218-3199298 0.00074 50_[+2]_22 chrX:12516537-12516617 0.00086 19_[+2]_53 chrIV:10890226-10890306 0.00086 42_[+2]_30 chrX:514217-514297 0.00093 64_[+2]_8 chrIV:15908407-15908487 0.0011 38_[+2]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGAAAAAR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGAAAAAR width=8 seqs=64 chrII:8394277-8394357 ( 56) AGAAAAAG 1 chrIV:16658876-16658956 ( 14) AGAAAAAG 1 chrIV:2734787-2734867 ( 10) AGAAAAAG 1 chrII:13964499-13964579 ( 22) AGAAAAAG 1 chrIV:9725622-9725702 ( 29) AGAAAAAG 1 chrX:14492601-14492681 ( 45) AGAAAAAG 1 chrIII:5517599-5517679 ( 6) AGAAAAAG 1 chrIV:10395259-10395339 ( 64) AGAAAAAA 1 chrI:9753256-9753336 ( 67) AGAAAAAA 1 chrX:13378674-13378754 ( 26) AGAAAAAA 1 chrIII:4495850-4495930 ( 67) AGAAAAAA 1 chrIV:1118760-1118840 ( 1) AGAAAAAA 1 chrIV:6752717-6752797 ( 50) AGAAAAAA 1 chrIII:4220953-4221033 ( 28) AGAAAAAA 1 chrIV:12813628-12813708 ( 73) AGAAAAAA 1 chrV:14935287-14935367 ( 47) AGAAAAAA 1 chrIII:8436416-8436496 ( 29) AGAAAAAA 1 chrV:8250525-8250605 ( 57) AGAAAAAA 1 chrII:4248680-4248760 ( 48) AGAAAAAA 1 chrV:1654947-1655027 ( 5) AGAAAAAA 1 chrIV:7554496-7554576 ( 18) TGAAAAAG 1 chrIV:14274992-14275072 ( 14) TGAAAAAA 1 chrX:9957584-9957664 ( 36) TGAAAAAA 1 chrII:11722316-11722396 ( 42) TGAAAAAA 1 chrII:8190780-8190860 ( 47) TGAAAAAA 1 chrV:10925815-10925895 ( 34) AGAAAATG 1 chrV:13253013-13253093 ( 16) AGAAAATG 1 chrI:8205259-8205339 ( 4) AGAAAATG 1 chrX:12885038-12885118 ( 17) AGAAAATA 1 chrIV:6879942-6880022 ( 40) AGAAAAAT 1 chrV:10234676-10234756 ( 63) AGAAAAAT 1 chrIV:829252-829332 ( 13) AGAAAAAT 1 chrI:6671456-6671536 ( 65) AGAGAAAG 1 chrI:6610391-6610471 ( 18) AGAGAAAG 1 chrIV:9810704-9810784 ( 31) TGAAAATG 1 chrIII:482876-482956 ( 3) TGAAAATG 1 chrIII:10150849-10150929 ( 53) AGAGAAAA 1 chrV:9259463-9259543 ( 38) TGAAAATG 1 chrV:20402998-20403078 ( 1) AGAGAAAA 1 chrX:5130563-5130643 ( 8) TGAAAATG 1 chrIV:8697447-8697527 ( 19) TGAAAATG 1 chrV:19668369-19668449 ( 7) TGAAAATG 1 chrX:15381101-15381181 ( 56) TGAAAATA 1 chrX:2144401-2144481 ( 25) TGAAAATA 1 chrIII:8123287-8123367 ( 66) TGAAAATA 1 chrII:10736008-10736088 ( 58) AGAAAAGG 1 chrV:9361666-9361746 ( 56) AGAAAAGA 1 chrII:6311611-6311691 ( 38) AGAAAAGA 1 chrI:10037183-10037263 ( 25) TGAAAAAT 1 chrII:10730879-10730959 ( 17) TGAAAAAT 1 chrV:10249222-10249302 ( 70) TGAAAAAT 1 chrII:747886-747966 ( 4) TGAAAAAT 1 chrI:5763795-5763875 ( 43) TGAAAAAT 1 chrV:6067253-6067333 ( 63) AGAAAAGA 1 chrX:16731311-16731391 ( 64) TGAGAAAG 1 chrV:3873184-3873264 ( 70) TGAGAAAG 1 chrX:11969286-11969366 ( 26) ACAAAAAG 1 chrII:335012-335092 ( 68) AGAGAATG 1 chrIII:13686473-13686553 ( 63) ACAAAAAA 1 chrIV:3199218-3199298 ( 51) ACAAAAAA 1 chrX:12516537-12516617 ( 20) AGCAAAAA 1 chrIV:10890226-10890306 ( 43) AGCAAAAA 1 chrX:514217-514297 ( 65) TCAAAAAG 1 chrIV:15908407-15908487 ( 39) AGAAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGAAAAAR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.88954 E= 7.9e+002 111 -1264 -1264 21 -1264 -167 223 -1264 168 -267 -1264 -1264 156 -1264 -87 -1264 172 -1264 -1264 -1264 172 -1264 -1264 -1264 121 -367 -168 -44 68 -1264 96 -125 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGAAAAAR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 64 E= 7.9e+002 0.656250 0.000000 0.000000 0.343750 0.000000 0.062500 0.937500 0.000000 0.968750 0.031250 0.000000 0.000000 0.890625 0.000000 0.109375 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.703125 0.015625 0.062500 0.218750 0.484375 0.000000 0.390625 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGAAAAAR MEME-2 regular expression -------------------------------------------------------------------------------- [AT]GAAAA[AT][AG] -------------------------------------------------------------------------------- Time 12.35 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCAACS MEME-3 width = 8 sites = 28 llr = 236 E-value = 3.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCAACS MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1339a:: pos.-specific C :::7::a3 probability G 197:1::6 matrix T 9::::::: bits 2.3 * 2.1 * 1.9 * * 1.6 * ** Relative 1.4 ** *** Entropy 1.2 ******** (12.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGCAACG consensus AA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:20139468-20139548 36 8.67e-06 CTGTTGTCTA TGGCAACG AGAAGCTGAA chrX:3339988-3340068 28 8.67e-06 TATAGCAATG TGGCAACG TAAACAACCA chrX:5552748-5552828 55 8.67e-06 GTTATTGCCA TGGCAACG CGCAGTTAAC chrIV:5904103-5904183 26 1.73e-05 ACAAAATGCT TGGCAACC GAAACCAACA chrII:10720158-10720238 10 1.73e-05 GGTTGCTCA TGGCAACC ACATGCAAAG chrIV:7156525-7156605 46 1.73e-05 TGGTATCCAA TGGCAACC GAAAGCATTT chrIII:12858673-12858753 53 1.73e-05 GTGTCCCCCA TGGCAACC GACGTACGCC chrIII:8122107-8122187 19 4.36e-05 TTTGGATTAA TGGAAACG TGCGCTCATA chrIII:4220953-4221033 7 4.36e-05 TCACTA TGGAAACG AGAGGGGATT chrIV:3774319-3774399 4 4.36e-05 CAT TGACAACG TGTTGACGTC chrX:763527-763607 54 4.36e-05 GTGGTCTCCA TGACAACG TGCCCCCTGC chrX:9437066-9437146 54 4.36e-05 ACAGCTGCCA TGACAACG TCCGGCAACA chrIV:9879055-9879135 25 4.36e-05 GAATTCGCCA TGGAAACG GGCGGCTCGT chrII:11722316-11722396 4 4.36e-05 CTA TGGAAACG ACAAGATATT chrII:10736008-10736088 20 4.36e-05 AGAGTCTCCT TGACAACG ATTCGTGGCT chrI:5448395-5448475 29 7.56e-05 TGAGTCTCCT TGACAACC AGCATATGCT chrIV:3199218-3199298 72 7.56e-05 TAAGCTGATA TGACAACC A chrI:8349484-8349564 45 7.56e-05 ACGGTTGATA TGGAAACC ATGGGAAACA chrV:1654947-1655027 52 7.56e-05 AAAATCTCCT TGGAAACC CGTCACACCC chrIV:7382143-7382223 5 8.14e-05 TCGT TGGCGACG AAAAACGCGT chrX:9928154-9928234 68 1.20e-04 AAGTTGCCCC TAGCAACG CCAGA chrI:5100690-5100770 23 1.20e-04 CGTGTCTCTA TAGCAACG TGAAGCAGGA chrV:3877371-3877451 58 1.44e-04 GTGTGCTCGA GGACAACG TGAATATTGC chrX:8874740-8874820 51 1.44e-04 TAAATGTTGT GGACAACG ACACCAGGAA chrIII:10604469-10604549 6 1.64e-04 CGCTC TGAAAACC AATTTCCGAA chrIII:10035933-10036013 24 1.90e-04 TGTGTTGTCT TGGCAACA GTCAGAATCT chrX:6353933-6354013 63 2.65e-04 ATCACGTGTT TAGAAACG TGATGTTTCG chrI:10920882-10920962 73 4.86e-04 CTAATTGGCG GGGAGACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:20139468-20139548 8.7e-06 35_[+3]_37 chrX:3339988-3340068 8.7e-06 27_[+3]_45 chrX:5552748-5552828 8.7e-06 54_[+3]_18 chrIV:5904103-5904183 1.7e-05 25_[+3]_47 chrII:10720158-10720238 1.7e-05 9_[+3]_63 chrIV:7156525-7156605 1.7e-05 45_[+3]_27 chrIII:12858673-12858753 1.7e-05 52_[+3]_20 chrIII:8122107-8122187 4.4e-05 18_[+3]_54 chrIII:4220953-4221033 4.4e-05 6_[+3]_66 chrIV:3774319-3774399 4.4e-05 3_[+3]_69 chrX:763527-763607 4.4e-05 53_[+3]_19 chrX:9437066-9437146 4.4e-05 53_[+3]_19 chrIV:9879055-9879135 4.4e-05 24_[+3]_48 chrII:11722316-11722396 4.4e-05 3_[+3]_69 chrII:10736008-10736088 4.4e-05 19_[+3]_53 chrI:5448395-5448475 7.6e-05 28_[+3]_44 chrIV:3199218-3199298 7.6e-05 71_[+3]_1 chrI:8349484-8349564 7.6e-05 44_[+3]_28 chrV:1654947-1655027 7.6e-05 51_[+3]_21 chrIV:7382143-7382223 8.1e-05 4_[+3]_68 chrX:9928154-9928234 0.00012 67_[+3]_5 chrI:5100690-5100770 0.00012 22_[+3]_50 chrV:3877371-3877451 0.00014 57_[+3]_15 chrX:8874740-8874820 0.00014 50_[+3]_22 chrIII:10604469-10604549 0.00016 5_[+3]_67 chrIII:10035933-10036013 0.00019 23_[+3]_49 chrX:6353933-6354013 0.00026 62_[+3]_10 chrI:10920882-10920962 0.00049 72_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCAACS width=8 seqs=28 chrV:20139468-20139548 ( 36) TGGCAACG 1 chrX:3339988-3340068 ( 28) TGGCAACG 1 chrX:5552748-5552828 ( 55) TGGCAACG 1 chrIV:5904103-5904183 ( 26) TGGCAACC 1 chrII:10720158-10720238 ( 10) TGGCAACC 1 chrIV:7156525-7156605 ( 46) TGGCAACC 1 chrIII:12858673-12858753 ( 53) TGGCAACC 1 chrIII:8122107-8122187 ( 19) TGGAAACG 1 chrIII:4220953-4221033 ( 7) TGGAAACG 1 chrIV:3774319-3774399 ( 4) TGACAACG 1 chrX:763527-763607 ( 54) TGACAACG 1 chrX:9437066-9437146 ( 54) TGACAACG 1 chrIV:9879055-9879135 ( 25) TGGAAACG 1 chrII:11722316-11722396 ( 4) TGGAAACG 1 chrII:10736008-10736088 ( 20) TGACAACG 1 chrI:5448395-5448475 ( 29) TGACAACC 1 chrIV:3199218-3199298 ( 72) TGACAACC 1 chrI:8349484-8349564 ( 45) TGGAAACC 1 chrV:1654947-1655027 ( 52) TGGAAACC 1 chrIV:7382143-7382223 ( 5) TGGCGACG 1 chrX:9928154-9928234 ( 68) TAGCAACG 1 chrI:5100690-5100770 ( 23) TAGCAACG 1 chrV:3877371-3877451 ( 58) GGACAACG 1 chrX:8874740-8874820 ( 51) GGACAACG 1 chrIII:10604469-10604549 ( 6) TGAAAACC 1 chrIII:10035933-10036013 ( 24) TGGCAACA 1 chrX:6353933-6354013 ( 63) TAGAAACG 1 chrI:10920882-10920962 ( 73) GGGAGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.32329 E= 3.6e+002 -1145 -1145 -90 158 -150 -1145 216 -1145 8 -1145 176 -1145 8 177 -1145 -1145 162 -1145 -149 -1145 172 -1145 -1145 -1145 -1145 233 -1145 -1145 -308 69 168 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 3.6e+002 0.000000 0.000000 0.107143 0.892857 0.107143 0.000000 0.892857 0.000000 0.321429 0.000000 0.678571 0.000000 0.321429 0.678571 0.000000 0.000000 0.928571 0.000000 0.071429 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.035714 0.321429 0.642857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACS MEME-3 regular expression -------------------------------------------------------------------------------- TG[GA][CA]AAC[GC] -------------------------------------------------------------------------------- Time 15.91 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCTCCCC MEME-4 width = 8 sites = 12 llr = 118 E-value = 3.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCTCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::1:::2 pos.-specific C 998:aa88 probability G :::::::: matrix T :129::3: bits 2.3 ** 2.1 ** 1.9 ** ** 1.6 *** ** * Relative 1.4 ******** Entropy 1.2 ******** (14.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCTCCCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15381101-15381181 71 3.68e-06 ATAACCAACC CCCTCCCC CC chrX:2596746-2596826 49 3.68e-06 TATTCACGCT CCCTCCCC CCAAAAAATT chrIII:5641056-5641136 9 9.20e-06 ATTTTACC CCCTCCTC CCGCCTTCAC chrV:404377-404457 7 9.20e-06 CTGCCA CCCTCCTC AGACACCCTA chrII:10720158-10720238 33 9.20e-06 CAAAGTACCC CCCTCCTC TTCGTTTTGA chrX:15662706-15662786 22 2.03e-05 ATCCCAATTT CCTTCCCC ATTCCGTTTA chrX:2819910-2819990 31 2.03e-05 AACTGCTTGT CCCTCCCA CAGTAGTCAC chrX:6654820-6654900 61 2.03e-05 TCTATTTTTT CCCTCCCA GCGCCTGAAA chrIII:6058699-6058779 21 2.03e-05 ACCGGAACAC CCTTCCCC TTCATCCACC chrII:12489815-12489895 33 2.41e-05 CTCTTTCTTT CCCACCCC ATGTGTCCCA chrIV:759490-759570 28 3.52e-05 GGCTACATGA CTCTCCCC AATTGTCATC chrI:10037183-10037263 73 3.52e-05 TATTTAGCCT ACCTCCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15381101-15381181 3.7e-06 70_[+4]_2 chrX:2596746-2596826 3.7e-06 48_[+4]_24 chrIII:5641056-5641136 9.2e-06 8_[+4]_64 chrV:404377-404457 9.2e-06 6_[+4]_66 chrII:10720158-10720238 9.2e-06 32_[+4]_40 chrX:15662706-15662786 2e-05 21_[+4]_51 chrX:2819910-2819990 2e-05 30_[+4]_42 chrX:6654820-6654900 2e-05 60_[+4]_12 chrIII:6058699-6058779 2e-05 20_[+4]_52 chrII:12489815-12489895 2.4e-05 32_[+4]_40 chrIV:759490-759570 3.5e-05 27_[+4]_45 chrI:10037183-10037263 3.5e-05 72_[+4] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCTCCCC width=8 seqs=12 chrX:15381101-15381181 ( 71) CCCTCCCC 1 chrX:2596746-2596826 ( 49) CCCTCCCC 1 chrIII:5641056-5641136 ( 9) CCCTCCTC 1 chrV:404377-404457 ( 7) CCCTCCTC 1 chrII:10720158-10720238 ( 33) CCCTCCTC 1 chrX:15662706-15662786 ( 22) CCTTCCCC 1 chrX:2819910-2819990 ( 31) CCCTCCCA 1 chrX:6654820-6654900 ( 61) CCCTCCCA 1 chrIII:6058699-6058779 ( 21) CCTTCCCC 1 chrII:12489815-12489895 ( 33) CCCACCCC 1 chrIV:759490-759570 ( 28) CTCTCCCC 1 chrI:10037183-10037263 ( 73) ACCTCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 3.9e+003 -186 220 -1023 -1023 -1023 220 -1023 -183 -1023 206 -1023 -84 -186 -1023 -1023 162 -1023 233 -1023 -1023 -1023 233 -1023 -1023 -1023 191 -1023 -25 -86 206 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.9e+003 0.083333 0.916667 0.000000 0.000000 0.000000 0.916667 0.000000 0.083333 0.000000 0.833333 0.000000 0.166667 0.083333 0.000000 0.000000 0.916667 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.166667 0.833333 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCC MEME-4 regular expression -------------------------------------------------------------------------------- CCCTCC[CT]C -------------------------------------------------------------------------------- Time 19.46 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTCCGCY MEME-5 width = 8 sites = 12 llr = 120 E-value = 1.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTCCGCY MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::3::1 pos.-specific C :a298:a4 probability G a::1:a:: matrix T ::8::::5 bits 2.3 ** ** 2.1 ** ** 1.9 ** * ** 1.6 ** * ** Relative 1.4 ** **** Entropy 1.2 ******* (14.4 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTCCGCT consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCCGCY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:3832183-3832263 22 3.72e-06 GCCTAGAAAT GCTCCGCC TACTTTGCTC chrII:3528386-3528466 20 3.72e-06 ATGTCACCAG GCTCCGCC CGCTTTCTTC chrV:7971531-7971611 46 9.29e-06 TGGTTAGAGA GCTCCGCT AATCTCTTCT chrX:17318399-17318479 1 9.29e-06 . GCTCCGCT GCGTTTCCTT chrX:2984155-2984235 22 9.29e-06 CTATGGCAAC GCTCCGCT AGCTTGACGA chrV:1149893-1149973 53 1.18e-05 gccgcactgc gccccgcc gcgcgcactg chrII:11453798-11453878 23 1.55e-05 TAAAACAGCT GCCCCGCT TATCGGCCAA chrV:1120273-1120353 8 2.12e-05 CTTAGAA GCTCAGCC AAATATAGCC chrIII:8322836-8322916 24 2.96e-05 TACACTTTTT GCTCAGCT TGTGATCACC chrV:6995477-6995557 5 2.96e-05 GTGC GCTCAGCT CTCGACATAT chrIV:2212951-2213031 73 3.53e-05 CCCAGGAGGG GCTCCGCA chrV:10924979-10925059 71 3.90e-05 GCTTGTGATA GCTGCGCC GC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCCGCY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:3832183-3832263 3.7e-06 21_[+5]_51 chrII:3528386-3528466 3.7e-06 19_[+5]_53 chrV:7971531-7971611 9.3e-06 45_[+5]_27 chrX:17318399-17318479 9.3e-06 [+5]_72 chrX:2984155-2984235 9.3e-06 21_[+5]_51 chrV:1149893-1149973 1.2e-05 52_[+5]_20 chrII:11453798-11453878 1.5e-05 22_[+5]_50 chrV:1120273-1120353 2.1e-05 7_[+5]_65 chrIII:8322836-8322916 3e-05 23_[+5]_49 chrV:6995477-6995557 3e-05 4_[+5]_68 chrIV:2212951-2213031 3.5e-05 72_[+5] chrV:10924979-10925059 3.9e-05 70_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCCGCY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTCCGCY width=8 seqs=12 chrIV:3832183-3832263 ( 22) GCTCCGCC 1 chrII:3528386-3528466 ( 20) GCTCCGCC 1 chrV:7971531-7971611 ( 46) GCTCCGCT 1 chrX:17318399-17318479 ( 1) GCTCCGCT 1 chrX:2984155-2984235 ( 22) GCTCCGCT 1 chrV:1149893-1149973 ( 53) GCCCCGCC 1 chrII:11453798-11453878 ( 23) GCCCCGCT 1 chrV:1120273-1120353 ( 8) GCTCAGCC 1 chrIII:8322836-8322916 ( 24) GCTCAGCT 1 chrV:6995477-6995557 ( 5) GCTCAGCT 1 chrIV:2212951-2213031 ( 73) GCTCCGCA 1 chrV:10924979-10925059 ( 71) GCTGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCCGCY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 1.1e+003 -1023 -1023 232 -1023 -1023 233 -1023 -1023 -1023 -26 -1023 148 -1023 220 -126 -1023 -28 191 -1023 -1023 -1023 -1023 232 -1023 -1023 233 -1023 -1023 -186 106 -1023 75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCCGCY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.1e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.916667 0.083333 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.416667 0.000000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCCGCY MEME-5 regular expression -------------------------------------------------------------------------------- GCTC[CA]GC[TC] -------------------------------------------------------------------------------- Time 22.89 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2984155-2984235 1.80e-04 14_[+3(8.67e-06)]_40_[+3(1.73e-05)]_\ 10 chrIV:4211866-4211946 2.66e-01 71_[+1(7.65e-05)]_1 chrIII:12858673-12858753 1.10e-02 52_[+3(1.73e-05)]_20 chrX:5552748-5552828 2.88e-03 54_[+3(8.67e-06)]_18 chrIII:31775-31855 5.69e-02 28_[+1(7.65e-05)]_44 chrI:4577721-4577801 7.86e-01 80 chrII:8190780-8190860 1.12e-01 80 chrX:7369940-7370020 2.98e-02 10_[+1(1.92e-05)]_62 chrII:14606997-14607077 5.28e-01 80 chrI:10920882-10920962 1.12e-01 80 chrV:1654947-1655027 1.22e-03 4_[+2(7.78e-05)]_39_[+3(7.56e-05)]_\ 21 chrIV:2736121-2736201 6.08e-01 80 chrII:9144501-9144581 3.91e-02 80 chrX:12149797-12149877 6.43e-01 80 chrV:3873184-3873264 2.52e-01 80 chrV:19668369-19668449 6.17e-04 65_[+1(5.75e-05)]_7 chrII:4248680-4248760 6.97e-02 47_[+2(7.78e-05)]_25 chrX:14720112-14720192 1.99e-02 80 chrI:3352282-3352362 4.89e-01 80 chrII:11453798-11453878 1.11e-02 22_[+5(1.55e-05)]_50 chrX:16731311-16731391 4.14e-02 80 chrX:10447125-10447205 7.21e-02 80 chrV:6067253-6067333 2.21e-01 80 chrX:5512870-5512950 6.13e-01 80 chrII:6342613-6342693 3.09e-01 80 chrX:6245703-6245783 6.26e-01 80 chrIV:2212951-2213031 1.92e-03 72_[+5(3.53e-05)] chrV:7901386-7901466 1.84e-02 80 chrV:5652075-5652155 1.64e-01 80 chrI:8349484-8349564 1.45e-01 44_[+3(7.56e-05)]_28 chrIII:5517599-5517679 1.71e-02 5_[+2(3.10e-05)]_67 chrV:6995477-6995557 2.31e-02 4_[+5(2.96e-05)]_68 chrII:10736008-10736088 1.69e-02 19_[+3(4.36e-05)]_53 chrIV:5198621-5198701 6.96e-01 80 chrV:8250525-8250605 9.66e-03 56_[+2(7.78e-05)]_16 chrIV:8697447-8697527 6.92e-02 80 chrI:10797902-10797982 3.49e-01 80 chrIV:5289120-5289200 1.44e-01 80 chrV:9705164-9705244 1.18e-01 80 chrI:6610391-6610471 6.23e-02 80 chrIV:3199218-3199298 2.38e-05 9_[+1(1.92e-05)]_54_[+3(7.56e-05)]_\ 1 chrII:6779237-6779317 4.74e-02 80 chrI:11692278-11692358 1.54e-01 80 chrX:3581948-3582028 2.88e-01 80 chrIII:9587618-9587698 6.15e-01 80 chrX:17318399-17318479 3.21e-03 [+5(9.29e-06)]_72 chrX:5363978-5364058 1.59e-01 80 chrII:12260719-12260799 8.81e-01 80 chrI:5763795-5763875 5.74e-02 80 chrIII:8322836-8322916 4.64e-03 23_[+5(2.96e-05)]_49 chrII:12489815-12489895 6.72e-02 32_[+4(2.41e-05)]_40 chrIV:829252-829332 2.16e-01 80 chrII:11722316-11722396 2.41e-02 3_[+3(4.36e-05)]_69 chrII:3528386-3528466 8.66e-03 19_[+5(3.72e-06)]_53 chrII:2335063-2335143 1.50e-01 80 chrIV:7382143-7382223 4.18e-02 4_[+3(8.14e-05)]_68 chrX:10589657-10589737 3.59e-01 80 chrIII:3145733-3145813 8.57e-01 80 chrII:7345354-7345434 6.08e-01 80 chrX:9957584-9957664 1.05e-01 80 chrIV:7554496-7554576 1.19e-01 80 chrIV:9879055-9879135 7.83e-02 24_[+3(4.36e-05)]_48 chrX:8874740-8874820 1.59e-02 80 chrX:13710680-13710760 2.26e-01 80 chrX:9437066-9437146 9.01e-03 36_[+5(9.84e-05)]_9_[+3(4.36e-05)]_\ 19 chrIII:8436416-8436496 1.85e-01 28_[+2(7.78e-05)]_44 chrI:5100690-5100770 2.39e-01 80 chrI:8535978-8536058 2.14e-01 80 chrV:15693829-15693909 7.76e-01 80 chrX:15800202-15800282 1.34e-01 80 chrIV:14557805-14557885 3.87e-01 80 chrII:6502-6582 7.12e-02 80 chrV:7971531-7971611 4.91e-03 45_[+5(9.29e-06)]_27 chrIV:7156525-7156605 3.29e-02 45_[+3(1.73e-05)]_27 chrIII:6058699-6058779 2.57e-02 20_[+4(2.03e-05)]_52 chrII:5883873-5883953 2.60e-01 80 chrX:6353933-6354013 2.88e-01 80 chrV:5016866-5016946 3.56e-01 80 chrIII:10604469-10604549 6.99e-03 80 chrX:14492601-14492681 3.81e-03 44_[+2(3.10e-05)]_28 chrV:1487434-1487514 4.05e-01 80 chrX:2819065-2819145 6.39e-01 80 chrX:763527-763607 5.37e-03 53_[+3(4.36e-05)]_19 chrIII:3804446-3804526 7.56e-02 80 chrX:6639863-6639943 1.27e-02 55_[+2(3.10e-05)]_17 chrIV:9510637-9510717 7.13e-02 80 chrV:14935287-14935367 1.74e-01 46_[+2(7.78e-05)]_26 chrV:9134126-9134206 1.46e-01 30_[+1(5.75e-05)]_42 chrV:4977713-4977793 9.56e-01 80 chrIII:13686473-13686553 4.41e-02 80 chrV:10234676-10234756 8.87e-02 80 chrV:14532518-14532598 9.14e-02 80 chrI:12603073-12603153 3.17e-01 80 chrIV:12813628-12813708 1.09e-02 6_[+2(7.78e-05)]_58_[+2(7.78e-05)] chrIV:9725622-9725702 4.79e-03 28_[+2(3.10e-05)]_44 chrII:10720158-10720238 6.47e-06 9_[+3(1.73e-05)]_15_[+4(9.20e-06)]_\ 40 chrV:9055836-9055916 2.88e-02 28_[+5(7.84e-05)]_44 chrIV:3774319-3774399 2.31e-02 3_[+3(4.36e-05)]_69 chrX:8798459-8798539 7.74e-01 80 chrIII:10035933-10036013 1.84e-01 80 chrX:5130563-5130643 4.14e-03 64_[+1(1.92e-05)]_8 chrI:1006004-1006084 2.74e-01 80 chrX:7977609-7977689 3.09e-02 80 chrV:13763884-13763964 8.30e-02 80 chrX:8963655-8963735 6.45e-01 80 chrII:747886-747966 2.16e-01 80 chrV:396477-396557 5.81e-02 80 chrV:1626165-1626245 1.17e-02 62_[+1(1.92e-05)]_10 chrIII:7090719-7090799 3.53e-01 80 chrII:13964499-13964579 1.73e-02 21_[+2(3.10e-05)]_51 chrV:10930142-10930222 5.22e-02 80 chrX:6654820-6654900 2.59e-03 60_[+4(2.03e-05)]_12 chrI:5448395-5448475 1.21e-01 28_[+3(7.56e-05)]_44 chrII:11376186-11376266 1.32e-01 80 chrIII:4220953-4221033 3.30e-03 6_[+3(4.36e-05)]_13_[+2(7.78e-05)]_\ 45 chrV:3856074-3856154 4.87e-03 52_[+1(3.86e-05)]_20 chrII:5889465-5889545 1.73e-01 80 chrX:2819910-2819990 5.60e-03 30_[+4(2.03e-05)]_42 chrII:7770402-7770482 9.31e-01 80 chrX:948035-948115 1.19e-01 80 chrX:15662706-15662786 9.12e-02 21_[+4(2.03e-05)]_51 chrIII:10762304-10762384 1.78e-01 80 chrI:8205259-8205339 1.63e-01 80 chrV:404377-404457 7.95e-05 6_[+4(9.20e-06)]_53_[+1(3.86e-05)]_\ 5 chrX:11982253-11982333 2.84e-01 80 chrV:18783640-18783720 2.80e-01 80 chrX:5883718-5883798 2.63e-01 80 chrII:15175318-15175398 3.03e-01 80 chrI:7293733-7293813 3.73e-01 80 chrV:9047864-9047944 4.58e-01 80 chrIV:6879942-6880022 3.74e-01 80 chrX:9928154-9928234 2.06e-03 50_[+1(9.57e-05)]_22 chrV:5507909-5507989 3.22e-01 80 chrV:10249222-10249302 5.25e-02 80 chrII:10379746-10379826 4.27e-01 80 chrIV:8127579-8127659 2.65e-01 80 chrII:5965139-5965219 1.86e-02 32_[+1(3.86e-05)]_40 chrX:1906137-1906217 2.32e-01 80 chrII:5334744-5334824 3.02e-02 [+1(3.86e-05)]_72 chrX:514217-514297 2.65e-02 44_[+5(6.90e-05)]_28 chrV:4794450-4794530 1.88e-01 80 chrII:335012-335092 6.74e-02 80 chrIV:6752717-6752797 1.97e-01 49_[+2(7.78e-05)]_23 chrIV:1118760-1118840 1.18e-01 [+2(7.78e-05)]_72 chrX:8961630-8961710 5.74e-02 80 chrIV:16659605-16659685 9.84e-02 80 chrI:5311130-5311210 2.87e-01 80 chrIV:7840068-7840148 9.05e-01 80 chrV:10924979-10925059 2.37e-03 70_[+5(3.90e-05)]_2 chrV:20402998-20403078 2.38e-01 80 chrV:1149893-1149973 1.63e-03 52_[+5(1.18e-05)]_20 chrV:13253013-13253093 9.12e-02 80 chrII:12708111-12708191 3.75e-01 80 chrII:6107732-6107812 4.12e-01 80 chrV:721390-721470 5.34e-01 80 chrIV:2734787-2734867 6.16e-03 9_[+2(3.10e-05)]_63 chrIII:8123287-8123367 4.58e-01 80 chrX:8800053-8800133 2.82e-01 80 chrV:11010935-11011015 9.73e-01 80 chrII:1640670-1640750 3.63e-01 80 chrX:3339988-3340068 6.69e-02 27_[+3(8.67e-06)]_45 chrV:1120273-1120353 5.28e-03 7_[+5(2.12e-05)]_65 chrX:5174394-5174474 1.72e-02 80 chrIV:10890226-10890306 3.24e-01 80 chrII:10730879-10730959 4.20e-01 80 chrII:5895691-5895771 5.90e-01 80 chrI:10037183-10037263 5.25e-03 72_[+4(3.52e-05)] chrX:12885038-12885118 5.62e-02 80 chrIV:14274992-14275072 1.93e-02 52_[+1(7.65e-05)]_20 chrV:9259463-9259543 3.19e-02 80 chrIV:5904103-5904183 7.26e-03 25_[+3(1.73e-05)]_47 chrIV:759490-759570 9.15e-03 27_[+4(3.52e-05)]_45 chrV:618097-618177 1.78e-01 80 chrX:12516537-12516617 8.73e-02 80 chrII:9115794-9115874 3.53e-01 80 chrII:8157145-8157225 1.12e-01 80 chrV:6005710-6005790 4.88e-01 80 chrX:5385903-5385983 2.25e-01 80 chrIII:10607287-10607367 7.65e-03 80 chrX:5387760-5387840 8.86e-01 80 chrII:12488984-12489064 3.14e-01 80 chrIII:5641056-5641136 2.20e-02 8_[+4(9.20e-06)]_64 chrV:20139468-20139548 6.43e-03 35_[+3(8.67e-06)]_37 chrV:3870532-3870612 3.09e-02 80 chrV:9366881-9366961 5.72e-01 80 chrV:6630941-6631021 2.04e-01 80 chrIII:10150849-10150929 3.13e-02 80 chrIV:15908407-15908487 1.87e-01 80 chrV:7970652-7970732 9.29e-01 80 chrI:6434635-6434715 8.71e-01 80 chrX:830313-830393 2.42e-02 80 chrIV:9673855-9673935 7.56e-01 80 chrX:8566812-8566892 1.69e-01 80 chrIII:4495850-4495930 1.53e-01 66_[+2(7.78e-05)]_6 chrIII:7118637-7118717 7.35e-01 80 chrIV:5580748-5580828 2.98e-02 43_[+1(1.92e-05)]_29 chrII:7977696-7977776 3.72e-02 37_[+1(1.92e-05)]_35 chrX:2144401-2144481 3.69e-01 80 chrI:8538355-8538435 3.25e-01 80 chrII:6311611-6311691 4.32e-01 80 chrX:13378674-13378754 6.26e-02 25_[+2(7.78e-05)]_47 chrIII:8122107-8122187 1.07e-01 18_[+3(4.36e-05)]_54 chrIV:1739078-1739158 4.95e-01 80 chrX:3583591-3583671 9.42e-01 80 chrI:6671456-6671536 3.79e-01 80 chrII:14590791-14590871 3.76e-01 80 chrV:6765074-6765154 8.80e-01 80 chrV:10925815-10925895 5.36e-03 58_[+1(1.92e-05)]_14 chrIV:5036547-5036627 4.00e-02 80 chrX:11969286-11969366 3.80e-01 80 chrX:844825-844905 1.35e-01 80 chrIII:482876-482956 8.77e-02 80 chrI:5018105-5018185 8.57e-01 80 chrI:3628263-3628343 9.69e-01 80 chrV:3042656-3042736 5.37e-02 70_[+1(9.57e-05)]_2 chrV:9364382-9364462 8.27e-01 80 chrII:9263913-9263993 9.84e-01 80 chrV:12773988-12774068 3.09e-01 80 chrV:3877371-3877451 8.08e-02 80 chrIV:9722162-9722242 2.17e-01 80 chrIII:13716406-13716486 3.17e-02 68_[+1(1.92e-05)]_4 chrV:9606467-9606547 9.74e-01 80 chrV:2774189-2774269 4.71e-01 80 chrV:6229123-6229203 1.61e-02 45_[+1(7.65e-05)]_27 chrIV:9810704-9810784 1.71e-01 80 chrI:11949408-11949488 6.29e-01 80 chrX:11405252-11405332 1.26e-01 80 chrIV:16658876-16658956 8.09e-02 13_[+2(3.10e-05)]_59 chrIII:12844953-12845033 9.97e-01 80 chrX:2596746-2596826 1.12e-04 22_[+1(1.92e-05)]_18_[+4(3.68e-06)]_\ 24 chrII:8394277-8394357 9.97e-02 55_[+2(3.10e-05)]_17 chrV:6631998-6632078 4.09e-01 80 chrV:5301385-5301465 6.53e-01 80 chrIV:3832183-3832263 4.59e-03 21_[+5(3.72e-06)]_51 chrI:6708768-6708848 8.60e-01 80 chrI:9753256-9753336 1.16e-02 66_[+2(7.78e-05)]_6 chrX:15381101-15381181 2.28e-04 70_[+4(3.68e-06)]_2 chrIV:9053593-9053673 9.28e-01 80 chrIV:10395259-10395339 5.16e-02 63_[+2(7.78e-05)]_9 chrV:9260578-9260658 5.40e-01 80 chrX:9956721-9956801 1.86e-01 80 chrI:3627176-3627256 2.76e-02 80 chrV:9361666-9361746 2.89e-01 80 chrV:6778603-6778683 4.95e-01 80 chrII:6745938-6746018 2.58e-01 80 chrV:6031730-6031810 6.17e-01 80 chrIV:3196356-3196436 5.95e-01 80 chrI:10167592-10167672 2.30e-02 34_[+1(3.86e-05)]_38 chrIV:1466899-1466979 7.17e-01 80 chrI:9860252-9860332 2.52e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************