******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/fkh-6.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:4392587-4392667 1.0000 80 chrII:4394641-4394721 1.0000 80 chrM:1848-1928 1.0000 80 chrIII:11093643-11093723 1.0000 80 chrX:8182000-8182080 1.0000 80 chrII:4373093-4373173 1.0000 80 chrX:5056376-5056456 1.0000 80 chrII:11044370-11044450 1.0000 80 chrV:16553036-16553116 1.0000 80 chrII:14406847-14406927 1.0000 80 chrIV:13021540-13021620 1.0000 80 chrM:5146-5226 1.0000 80 chrIV:1687231-1687311 1.0000 80 chrIV:12370677-12370757 1.0000 80 chrIV:17268921-17269001 1.0000 80 chrII:4381306-4381386 1.0000 80 chrM:3257-3337 1.0000 80 chrX:5816493-5816573 1.0000 80 chrX:5205704-5205784 1.0000 80 chrII:13817427-13817507 1.0000 80 chrV:5284755-5284835 1.0000 80 chrII:4385613-4385693 1.0000 80 chrI:933477-933557 1.0000 80 chrIII:4450859-4450939 1.0000 80 chrII:11398793-11398873 1.0000 80 chrM:11657-11737 1.0000 80 chrII:4392792-4392872 1.0000 80 chrM:10076-10156 1.0000 80 chrX:10394308-10394388 1.0000 80 chrM:4947-5027 1.0000 80 chrI:9910721-9910801 1.0000 80 chrV:12510085-12510165 1.0000 80 chrIII:13474605-13474685 1.0000 80 chrI:4475212-4475292 1.0000 80 chrV:11844983-11845063 1.0000 80 chrI:12899126-12899206 1.0000 80 chrII:4395925-4396005 1.0000 80 chrIV:3476678-3476758 1.0000 80 chrIII:3499981-3500061 1.0000 80 chrM:3561-3641 1.0000 80 chrI:13422654-13422734 1.0000 80 chrI:1213521-1213601 1.0000 80 chrIII:931568-931648 1.0000 80 chrIII:4196717-4196797 1.0000 80 chrIII:4281074-4281154 1.0000 80 chrI:2487856-2487936 1.0000 80 chrX:7562758-7562838 1.0000 80 chrV:10717118-10717198 1.0000 80 chrII:3055735-3055815 1.0000 80 chrI:7251654-7251734 1.0000 80 chrII:10202484-10202564 1.0000 80 chrX:3994574-3994654 1.0000 80 chrIII:10856978-10857058 1.0000 80 chrI:11092184-11092264 1.0000 80 chrM:3011-3091 1.0000 80 chrM:8958-9038 1.0000 80 chrM:8228-8308 1.0000 80 chrI:12593081-12593161 1.0000 80 chrI:10469062-10469142 1.0000 80 chrX:9506434-9506514 1.0000 80 chrII:1421833-1421913 1.0000 80 chrI:6760298-6760378 1.0000 80 chrIV:3521100-3521180 1.0000 80 chrX:2552373-2552453 1.0000 80 chrII:8358622-8358702 1.0000 80 chrIV:572638-572718 1.0000 80 chrX:14027040-14027120 1.0000 80 chrII:5933247-5933327 1.0000 80 chrV:12896044-12896124 1.0000 80 chrV:3218781-3218861 1.0000 80 chrX:13143335-13143415 1.0000 80 chrI:15041630-15041710 1.0000 80 chrII:11185140-11185220 1.0000 80 chrI:2710668-2710748 1.0000 80 chrIII:10123783-10123863 1.0000 80 chrM:7258-7338 1.0000 80 chrIII:9052778-9052858 1.0000 80 chrIII:11848461-11848541 1.0000 80 chrIII:8262762-8262842 1.0000 80 chrI:3603482-3603562 1.0000 80 chrI:13817532-13817612 1.0000 80 chrIV:9048257-9048337 1.0000 80 chrIII:3476338-3476418 1.0000 80 chrIV:1896402-1896482 1.0000 80 chrX:9917530-9917610 1.0000 80 chrX:2885492-2885572 1.0000 80 chrX:13675679-13675759 1.0000 80 chrI:14863537-14863617 1.0000 80 chrI:173903-173983 1.0000 80 chrII:8325317-8325397 1.0000 80 chrX:8638960-8639040 1.0000 80 chrI:10037672-10037752 1.0000 80 chrX:8806574-8806654 1.0000 80 chrII:12175494-12175574 1.0000 80 chrIII:13225186-13225266 1.0000 80 chrI:11095937-11096017 1.0000 80 chrIV:12615608-12615688 1.0000 80 chrI:4201643-4201723 1.0000 80 chrI:14612815-14612895 1.0000 80 chrV:13415710-13415790 1.0000 80 chrI:13421198-13421278 1.0000 80 chrIV:14032705-14032785 1.0000 80 chrII:6734846-6734926 1.0000 80 chrI:7935747-7935827 1.0000 80 chrII:15089573-15089653 1.0000 80 chrV:155402-155482 1.0000 80 chrIII:3601437-3601517 1.0000 80 chrIII:8144730-8144810 1.0000 80 chrIV:11310769-11310849 1.0000 80 chrI:2299627-2299707 1.0000 80 chrIV:9316174-9316254 1.0000 80 chrV:6880791-6880871 1.0000 80 chrX:3343841-3343921 1.0000 80 chrIV:1981071-1981151 1.0000 80 chrIV:521561-521641 1.0000 80 chrM:6036-6116 1.0000 80 chrM:1054-1134 1.0000 80 chrII:6943883-6943963 1.0000 80 chrX:10990744-10990824 1.0000 80 chrX:5591962-5592042 1.0000 80 chrX:11248247-11248327 1.0000 80 chrX:12902372-12902452 1.0000 80 chrV:13171258-13171338 1.0000 80 chrI:1315631-1315711 1.0000 80 chrV:4373183-4373263 1.0000 80 chrI:3176586-3176666 1.0000 80 chrIII:13187928-13188008 1.0000 80 chrIV:6747840-6747920 1.0000 80 chrIII:2293266-2293346 1.0000 80 chrX:3348066-3348146 1.0000 80 chrI:1559264-1559344 1.0000 80 chrV:13411460-13411540 1.0000 80 chrV:20424920-20425000 1.0000 80 chrIII:8529133-8529213 1.0000 80 chrIII:4905517-4905597 1.0000 80 chrIV:17183237-17183317 1.0000 80 chrIII:11091804-11091884 1.0000 80 chrX:5763975-5764055 1.0000 80 chrX:2879768-2879848 1.0000 80 chrX:2878232-2878312 1.0000 80 chrIV:14496611-14496691 1.0000 80 chrX:5518508-5518588 1.0000 80 chrII:5836440-5836520 1.0000 80 chrX:2793735-2793815 1.0000 80 chrII:13975264-13975344 1.0000 80 chrII:8128861-8128941 1.0000 80 chrIII:7088081-7088161 1.0000 80 chrX:9113950-9114030 1.0000 80 chrX:15108071-15108151 1.0000 80 chrII:10761837-10761917 1.0000 80 chrM:2115-2195 1.0000 80 chrX:12890291-12890371 1.0000 80 chrI:14606049-14606129 1.0000 80 chrIII:844173-844253 1.0000 80 chrI:9116055-9116135 1.0000 80 chrIII:8650402-8650482 1.0000 80 chrII:8927405-8927485 1.0000 80 chrIV:11315050-11315130 1.0000 80 chrIV:8973697-8973777 1.0000 80 chrI:6136567-6136647 1.0000 80 chrV:7746007-7746087 1.0000 80 chrV:7465664-7465744 1.0000 80 chrI:3738279-3738359 1.0000 80 chrI:7772600-7772680 1.0000 80 chrV:12353646-12353726 1.0000 80 chrV:11644276-11644356 1.0000 80 chrIII:5308422-5308502 1.0000 80 chrI:12899346-12899426 1.0000 80 chrI:9051214-9051294 1.0000 80 chrX:5480339-5480419 1.0000 80 chrI:1415957-1416037 1.0000 80 chrX:7569801-7569881 1.0000 80 chrIII:5136383-5136463 1.0000 80 chrIV:10085875-10085955 1.0000 80 chrIV:8066701-8066781 1.0000 80 chrX:11384793-11384873 1.0000 80 chrV:4964334-4964414 1.0000 80 chrII:6741597-6741677 1.0000 80 chrII:8062408-8062488 1.0000 80 chrV:11029439-11029519 1.0000 80 chrIII:11290698-11290778 1.0000 80 chrV:9625816-9625896 1.0000 80 chrV:13704088-13704168 1.0000 80 chrIII:9191332-9191412 1.0000 80 chrI:10026052-10026132 1.0000 80 chrIII:3664381-3664461 1.0000 80 chrIII:1218374-1218454 1.0000 80 chrV:11080498-11080578 1.0000 80 chrV:1474739-1474819 1.0000 80 chrIV:7235493-7235573 1.0000 80 chrM:4630-4710 1.0000 80 chrV:11124091-11124171 1.0000 80 chrIII:7199006-7199086 1.0000 80 chrIV:17099269-17099349 1.0000 80 chrV:10356096-10356176 1.0000 80 chrIII:1824652-1824732 1.0000 80 chrIII:7642153-7642233 1.0000 80 chrM:8435-8515 1.0000 80 chrI:5281831-5281911 1.0000 80 chrI:9448141-9448221 1.0000 80 chrIII:13360073-13360153 1.0000 80 chrII:7001569-7001649 1.0000 80 chrIII:6551593-6551673 1.0000 80 chrM:9158-9238 1.0000 80 chrIII:3175136-3175216 1.0000 80 chrV:20832815-20832895 1.0000 80 chrM:6241-6321 1.0000 80 chrI:10642457-10642537 1.0000 80 chrIII:9705470-9705550 1.0000 80 chrX:8053075-8053155 1.0000 80 chrV:5846753-5846833 1.0000 80 chrV:3587747-3587827 1.0000 80 chrX:15275159-15275239 1.0000 80 chrII:6383385-6383465 1.0000 80 chrIV:8334102-8334182 1.0000 80 chrX:9822731-9822811 1.0000 80 chrX:6252245-6252325 1.0000 80 chrII:12042372-12042452 1.0000 80 chrII:5819816-5819896 1.0000 80 chrV:9293420-9293500 1.0000 80 chrII:6411872-6411952 1.0000 80 chrIV:6631966-6632046 1.0000 80 chrV:11239362-11239442 1.0000 80 chrII:3567767-3567847 1.0000 80 chrX:17184486-17184566 1.0000 80 chrII:4238035-4238115 1.0000 80 chrX:2599007-2599087 1.0000 80 chrIV:12584271-12584351 1.0000 80 chrX:8556831-8556911 1.0000 80 chrII:7708721-7708801 1.0000 80 chrIII:4426924-4427004 1.0000 80 chrV:13393451-13393531 1.0000 80 chrIV:2033181-2033261 1.0000 80 chrIV:7387283-7387363 1.0000 80 chrX:14115631-14115711 1.0000 80 chrIV:1388208-1388288 1.0000 80 chrII:9308867-9308947 1.0000 80 chrII:14528396-14528476 1.0000 80 chrIV:5334724-5334804 1.0000 80 chrI:3350082-3350162 1.0000 80 chrX:4265748-4265828 1.0000 80 chrI:7084516-7084596 1.0000 80 chrIII:5769872-5769952 1.0000 80 chrX:1120520-1120600 1.0000 80 chrX:12655470-12655550 1.0000 80 chrI:13310354-13310434 1.0000 80 chrII:5772985-5773065 1.0000 80 chrIV:3232981-3233061 1.0000 80 chrV:2673997-2674077 1.0000 80 chrX:8156098-8156178 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_fkh-6/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/fkh-6.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.242 C 0.249 G 0.245 T 0.263 Background letter frequencies (from file dataset with add-one prior applied): A 0.242 C 0.25 G 0.245 T 0.263 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGAGARA MEME-1 width = 8 sites = 43 llr = 337 E-value = 1.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAGARA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2a:73937 pos.-specific C :::::::: probability G 8:a37:7: matrix T :::::1:3 bits 2.0 ** 1.8 ** 1.6 ** 1.4 ** * Relative 1.2 **** * Entropy 1.0 ******** (11.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus A GA AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:9308867-9308947 12 1.24e-05 Tagggaaaga gagagaga gaggagaTGG chrX:15275159-15275239 58 1.24e-05 AAGACGGAGA GAGAGAGA TATGGAAAGA chrI:11095937-11096017 58 1.24e-05 CAGTCCAaga gagagaga ccgagagaca chrI:11092184-11092264 29 1.24e-05 GGGAGACATA GAGAGAGA CAATATACGC chrII:4392792-4392872 8 1.24e-05 atagaga gagagaga gaCCCCAAGG chrI:10037672-10037752 28 2.46e-05 GGAGCTTCAA GAGAGAAA AAGCGACAGC chrI:15041630-15041710 34 2.46e-05 GGAGGGTGAC GAGAGAAA GAAGGGGAAA chrV:155402-155482 18 3.68e-05 AGAATGAGAA GAGAAAGA AAAAGAGACC chrX:2885492-2885572 67 3.68e-05 GCAGTGGAAG GAGAAAGA GGAGGA chrIV:7387283-7387363 43 5.02e-05 GAAGCAAAAC GAGAGAGT ATTGGGATAG chrIII:931568-931648 34 5.02e-05 tgggaagcca gagagagt aaaatatggt chrII:14406847-14406927 34 5.02e-05 TGAGGAGCAG GAGAGAGT CAAGGATCAG chrII:8128861-8128941 72 6.27e-05 TCGGCCTGGG GAGGGAGA A chrI:14612815-14612895 16 7.49e-05 GCAAGCAACC AAGAGAGA TAGAGAGGAA chrIII:4450859-4450939 34 7.49e-05 CAAAAGGGGG AAGAGAGA CGATGCGGGA chrIII:8650402-8650482 63 8.70e-05 TGCCCGGCTG GAGAAAAA TGGGGGACTT chrII:5836440-5836520 47 8.70e-05 AACGATTTGT GAGAAAAA TTAGTTGTCT chrII:10202484-10202564 15 1.00e-04 GTGAAAGAGT GAGAGAAT TCGAGAAGCG chrIV:6631966-6632046 61 1.14e-04 TCGCGAATTG GAGAAAGT TCAGCCACGC chrI:3176586-3176666 8 1.14e-04 AAAATTG GAGAAAGT TAGGCCACGG chrV:5846753-5846833 60 1.26e-04 TATAGGGTGT GAGGGAAA GAAGCAAAAT chrX:5763975-5764055 41 1.26e-04 AGCGATGAGC GAGGGAAA TAACAGACGA chrX:9822731-9822811 6 1.50e-04 GAAGC GAGGAAGA AACGCACAAA chrIII:13360073-13360153 16 1.50e-04 TAGAAATGTG AAGAGAAA TAGGGAAGTA chrIV:8973697-8973777 13 1.50e-04 GGAAATATGG AAGAGAAA TCAATTGGGG chrII:4394641-4394721 36 1.50e-04 ATTAGAGAAG AAGAGAAA GGAGAAAAGA chrV:11080498-11080578 38 1.89e-04 CCCGTGGAAA GAGGGAGT TTATGGGTGG chrIV:6747840-6747920 16 1.89e-04 AGAGTACACG GAGGGAGT TAGTCCGCGG chrX:9917530-9917610 12 1.89e-04 CTCGGGGGAC GAGAGTGA GAGACAACTA chrV:12896044-12896124 24 1.89e-04 AAGCTGGACG AAGAAAGA AGGCGGTAGG chrI:12593081-12593161 20 1.89e-04 GATCAAGATA GAGGGAGT GGGGGGAGGC chrI:7251654-7251734 51 1.89e-04 ACGTAGCCAT GAGAGTGA CGTCACTGAA chrIV:9048257-9048337 51 2.03e-04 tgggaagcca aagagagt aaataatagt chrIV:8066701-8066781 62 2.16e-04 GGAGTGCGCA GAGAAAAT GAGCGTGAAA chrX:6252245-6252325 8 2.28e-04 CGTATAA AAGGGAGA AGGGGGAGGA chrIV:11310769-11310849 16 2.40e-04 AGTAAAATAA GAGGAAAA GTGCGCGGCG chrI:3350082-3350162 37 2.79e-04 TTAGAAATGT GAGGGAAT AGATAACTTT chrX:8806574-8806654 38 2.79e-04 AAATGAGTAG AAGAAAAA CAAGATGGGC chrI:7084516-7084596 9 3.19e-04 TTGTGGTT GAGAATGA CTGACTGACT chrII:10761837-10761917 47 3.19e-04 GCGGAAAAAA GAGAATGA GATGGGACAC chrII:11185140-11185220 2 3.46e-04 A GAGAGTGT GCAAGATGAA chrX:2552373-2552453 30 3.84e-04 GGAGGTGAGT GAGGGTGA CCAGTGTGCG chrM:2115-2195 19 4.65e-04 GCGGTATCGT AAGAAAAT CAAAATATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:9308867-9308947 1.2e-05 11_[+1]_61 chrX:15275159-15275239 1.2e-05 57_[+1]_15 chrI:11095937-11096017 1.2e-05 57_[+1]_15 chrI:11092184-11092264 1.2e-05 28_[+1]_44 chrII:4392792-4392872 1.2e-05 7_[+1]_65 chrI:10037672-10037752 2.5e-05 27_[+1]_45 chrI:15041630-15041710 2.5e-05 33_[+1]_39 chrV:155402-155482 3.7e-05 17_[+1]_55 chrX:2885492-2885572 3.7e-05 66_[+1]_6 chrIV:7387283-7387363 5e-05 42_[+1]_30 chrIII:931568-931648 5e-05 33_[+1]_39 chrII:14406847-14406927 5e-05 33_[+1]_39 chrII:8128861-8128941 6.3e-05 71_[+1]_1 chrI:14612815-14612895 7.5e-05 15_[+1]_57 chrIII:4450859-4450939 7.5e-05 33_[+1]_39 chrIII:8650402-8650482 8.7e-05 62_[+1]_10 chrII:5836440-5836520 8.7e-05 46_[+1]_26 chrII:10202484-10202564 0.0001 14_[+1]_58 chrIV:6631966-6632046 0.00011 60_[+1]_12 chrI:3176586-3176666 0.00011 7_[+1]_65 chrV:5846753-5846833 0.00013 59_[+1]_13 chrX:5763975-5764055 0.00013 40_[+1]_32 chrX:9822731-9822811 0.00015 5_[+1]_67 chrIII:13360073-13360153 0.00015 15_[+1]_57 chrIV:8973697-8973777 0.00015 12_[+1]_60 chrII:4394641-4394721 0.00015 35_[+1]_37 chrV:11080498-11080578 0.00019 37_[+1]_35 chrIV:6747840-6747920 0.00019 15_[+1]_57 chrX:9917530-9917610 0.00019 11_[+1]_61 chrV:12896044-12896124 0.00019 23_[+1]_49 chrI:12593081-12593161 0.00019 19_[+1]_53 chrI:7251654-7251734 0.00019 50_[+1]_22 chrIV:9048257-9048337 0.0002 50_[+1]_22 chrIV:8066701-8066781 0.00022 61_[+1]_11 chrX:6252245-6252325 0.00023 7_[+1]_65 chrIV:11310769-11310849 0.00024 15_[+1]_57 chrI:3350082-3350162 0.00028 36_[+1]_36 chrX:8806574-8806654 0.00028 37_[+1]_35 chrI:7084516-7084596 0.00032 8_[+1]_64 chrII:10761837-10761917 0.00032 46_[+1]_26 chrII:11185140-11185220 0.00035 1_[+1]_71 chrX:2552373-2552453 0.00038 29_[+1]_43 chrM:2115-2195 0.00046 18_[+1]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAGARA width=8 seqs=43 chrII:9308867-9308947 ( 12) GAGAGAGA 1 chrX:15275159-15275239 ( 58) GAGAGAGA 1 chrI:11095937-11096017 ( 58) GAGAGAGA 1 chrI:11092184-11092264 ( 29) GAGAGAGA 1 chrII:4392792-4392872 ( 8) GAGAGAGA 1 chrI:10037672-10037752 ( 28) GAGAGAAA 1 chrI:15041630-15041710 ( 34) GAGAGAAA 1 chrV:155402-155482 ( 18) GAGAAAGA 1 chrX:2885492-2885572 ( 67) GAGAAAGA 1 chrIV:7387283-7387363 ( 43) GAGAGAGT 1 chrIII:931568-931648 ( 34) GAGAGAGT 1 chrII:14406847-14406927 ( 34) GAGAGAGT 1 chrII:8128861-8128941 ( 72) GAGGGAGA 1 chrI:14612815-14612895 ( 16) AAGAGAGA 1 chrIII:4450859-4450939 ( 34) AAGAGAGA 1 chrIII:8650402-8650482 ( 63) GAGAAAAA 1 chrII:5836440-5836520 ( 47) GAGAAAAA 1 chrII:10202484-10202564 ( 15) GAGAGAAT 1 chrIV:6631966-6632046 ( 61) GAGAAAGT 1 chrI:3176586-3176666 ( 8) GAGAAAGT 1 chrV:5846753-5846833 ( 60) GAGGGAAA 1 chrX:5763975-5764055 ( 41) GAGGGAAA 1 chrX:9822731-9822811 ( 6) GAGGAAGA 1 chrIII:13360073-13360153 ( 16) AAGAGAAA 1 chrIV:8973697-8973777 ( 13) AAGAGAAA 1 chrII:4394641-4394721 ( 36) AAGAGAAA 1 chrV:11080498-11080578 ( 38) GAGGGAGT 1 chrIV:6747840-6747920 ( 16) GAGGGAGT 1 chrX:9917530-9917610 ( 12) GAGAGTGA 1 chrV:12896044-12896124 ( 24) AAGAAAGA 1 chrI:12593081-12593161 ( 20) GAGGGAGT 1 chrI:7251654-7251734 ( 51) GAGAGTGA 1 chrIV:9048257-9048337 ( 51) AAGAGAGT 1 chrIV:8066701-8066781 ( 62) GAGAAAAT 1 chrX:6252245-6252325 ( 8) AAGGGAGA 1 chrIV:11310769-11310849 ( 16) GAGGAAAA 1 chrI:3350082-3350162 ( 37) GAGGGAAT 1 chrX:8806574-8806654 ( 38) AAGAAAAA 1 chrI:7084516-7084596 ( 9) GAGAATGA 1 chrII:10761837-10761917 ( 47) GAGAATGA 1 chrII:11185140-11185220 ( 2) GAGAGTGT 1 chrX:2552373-2552453 ( 30) GAGGGTGA 1 chrM:2115-2195 ( 19) AAGAAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8043 E= 1.3e+000 -6 -1207 165 -1207 205 -1207 -1207 -1207 -1207 -1207 203 -1207 162 -1207 6 -1207 43 -1207 146 -1207 183 -1207 -1207 -92 53 -1207 141 -1207 148 -1207 -1207 31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 1.3e+000 0.232558 0.000000 0.767442 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.744186 0.000000 0.255814 0.000000 0.325581 0.000000 0.674419 0.000000 0.860465 0.000000 0.000000 0.139535 0.348837 0.000000 0.651163 0.000000 0.674419 0.000000 0.000000 0.325581 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARA MEME-1 regular expression -------------------------------------------------------------------------------- [GA]AG[AG][GA]A[GA][AT] -------------------------------------------------------------------------------- Time 9.38 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCCKAG MEME-2 width = 8 sites = 15 llr = 150 E-value = 7.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::2:a: pos.-specific C :::a8::: probability G :aa::3:a matrix T a::::7:: bits 2.0 *** ** 1.8 **** ** 1.6 **** ** 1.4 **** ** Relative 1.2 ***** ** Entropy 1.0 ******** (14.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGCCTAG consensus AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:7199006-7199086 11 1.54e-05 ATTGAACCAT TGGCCTAG AAAATTCAAA chrX:7569801-7569881 45 1.54e-05 CACGGCCGCG TGGCCTAG TTTTTTCAAT chrIII:5308422-5308502 3 1.54e-05 AA TGGCCTAG AACCACCGGT chrV:11644276-11644356 67 1.54e-05 CCAATGGCCG TGGCCTAG CTTTCT chrV:7465664-7465744 63 1.54e-05 GGCATGGACG TGGCCTAG AATTCCCCAA chrV:20424920-20425000 54 1.54e-05 TTCCCAATGG TGGCCTAG AAAACCCCGA chrIII:4196717-4196797 37 1.54e-05 CAGGATCCAA TGGCCTAG CTTTACCCAG chrX:5205704-5205784 41 1.54e-05 CGAGCGGCCG TGGCCTAG CGTTTGCACT chrIII:5769872-5769952 39 2.97e-05 GGTGGAGAGA TGGCCGAG CGGTCCAAGG chrIII:11290698-11290778 37 2.97e-05 ACACACCGGG TGGCCGAG TGGGGATTTC chrII:8927405-8927485 7 2.97e-05 AACTGG TGGCCGAG AAATTCGCTG chrI:6760298-6760378 21 2.97e-05 AGTTTCCACA TGGCCGAG CTATCTCGTG chrI:9116055-9116135 40 4.46e-05 CTTTGTTTTT TGGCATAG ATTTTTTTCT chrIII:3476338-3476418 24 4.46e-05 TTAAGGTGAG TGGCATAG TTTTTGTACT chrV:2673997-2674077 28 5.85e-05 ATTGGCTCAG TGGCAGAG CGTCTGTCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:7199006-7199086 1.5e-05 10_[+2]_62 chrX:7569801-7569881 1.5e-05 44_[+2]_28 chrIII:5308422-5308502 1.5e-05 2_[+2]_70 chrV:11644276-11644356 1.5e-05 66_[+2]_6 chrV:7465664-7465744 1.5e-05 62_[+2]_10 chrV:20424920-20425000 1.5e-05 53_[+2]_19 chrIII:4196717-4196797 1.5e-05 36_[+2]_36 chrX:5205704-5205784 1.5e-05 40_[+2]_32 chrIII:5769872-5769952 3e-05 38_[+2]_34 chrIII:11290698-11290778 3e-05 36_[+2]_36 chrII:8927405-8927485 3e-05 6_[+2]_66 chrI:6760298-6760378 3e-05 20_[+2]_52 chrI:9116055-9116135 4.5e-05 39_[+2]_33 chrIII:3476338-3476418 4.5e-05 23_[+2]_49 chrV:2673997-2674077 5.8e-05 27_[+2]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCCKAG width=8 seqs=15 chrIII:7199006-7199086 ( 11) TGGCCTAG 1 chrX:7569801-7569881 ( 45) TGGCCTAG 1 chrIII:5308422-5308502 ( 3) TGGCCTAG 1 chrV:11644276-11644356 ( 67) TGGCCTAG 1 chrV:7465664-7465744 ( 63) TGGCCTAG 1 chrV:20424920-20425000 ( 54) TGGCCTAG 1 chrIII:4196717-4196797 ( 37) TGGCCTAG 1 chrX:5205704-5205784 ( 41) TGGCCTAG 1 chrIII:5769872-5769952 ( 39) TGGCCGAG 1 chrIII:11290698-11290778 ( 37) TGGCCGAG 1 chrII:8927405-8927485 ( 7) TGGCCGAG 1 chrI:6760298-6760378 ( 21) TGGCCGAG 1 chrI:9116055-9116135 ( 40) TGGCATAG 1 chrIII:3476338-3476418 ( 24) TGGCATAG 1 chrV:2673997-2674077 ( 28) TGGCAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9222 E= 7.3e+000 -1055 -1055 -1055 192 -1055 -1055 203 -1055 -1055 -1055 203 -1055 -1055 200 -1055 -1055 -27 168 -1055 -1055 -1055 -1055 44 134 205 -1055 -1055 -1055 -1055 -1055 203 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 7.3e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.000000 0.333333 0.666667 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-2 regular expression -------------------------------------------------------------------------------- TGGC[CA][TG]AG -------------------------------------------------------------------------------- Time 13.34 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCTCYC MEME-3 width = 8 sites = 41 llr = 316 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCTCYC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::1:::1: pos.-specific C :7:8:a38 probability G :::::::2 matrix T a392a:6: bits 2.0 1.8 * * 1.6 * ** 1.4 * * ** * Relative 1.2 * **** * Entropy 1.0 ****** * (11.1 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCYC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17184486-17184566 7 1.87e-05 catctt tctctctc actcTTTCCC chrIV:10085875-10085955 67 1.87e-05 CTTCTCTCTC TCTCTCTC GATATT chrIV:11315050-11315130 69 1.87e-05 TTTTTATGTT TCTCTCTC CAGA chrX:15108071-15108151 47 1.87e-05 TTCCAAAACG TCTCTCTC TCTTGCCTCC chrI:1559264-1559344 17 1.87e-05 tgaatctctt tctctctc tcactGCAGC chrI:1315631-1315711 38 1.87e-05 tgacactttc tctctctc tTGCGCGCgt chrI:2299627-2299707 16 1.87e-05 GTCGGACCAT TCTCTCTC TCTCGCTTTT chrX:13675679-13675759 41 1.87e-05 tctctctctc tctctctc tcaccgcttc chrV:3218781-3218861 17 1.87e-05 GCGTGGGGTC TCTCTCTC TGTTCTTCGC chrI:4475212-4475292 23 1.87e-05 tctctccatc tctctctc tctctctcAC chrV:20832815-20832895 51 3.65e-05 CGTTCTCTCA TCTCTCCC CACTCGTGAG chrIV:572638-572718 42 3.65e-05 ACAGTCACCC TCTCTCCC ACCTCTACAC chrIV:12370677-12370757 59 3.65e-05 TCTGCCCCAC TCTCTCCC TCTCTTCATA chrX:12655470-12655550 51 5.61e-05 GTTCCTCTCG TTTCTCTC CTCTCGGCGC chrI:933477-933557 34 5.61e-05 ACCAATTATC TTTCTCTC TGtggcttcc chrX:7562758-7562838 24 7.48e-05 TCTATTCTTA TTTCTCCC TTGCCCTTGT chrII:13817427-13817507 62 7.48e-05 ACACACACAT TTTCTCCC CAAACTCACC chrIV:17099269-17099349 57 9.45e-05 CTTCCAGTTC TCTTTCTC GCGATTCTCT chrI:7772600-7772680 1 9.45e-05 . TCTTTCTC ACTTAAAATG chrIV:8334102-8334182 14 1.47e-04 GGTGTACCAC TCTCTCAC TCTCTATCTC chrIV:7235493-7235573 16 1.47e-04 ATTTCTCATC TCACTCTC TCCTTCGTTT chrX:9113950-9114030 28 1.47e-04 GGCCATTTCC TCTCTCAC TTTACCCTCT chrII:4392587-4392667 33 1.47e-04 TCTCTATGCG TCTCTCTG ACAATCTCTC chrII:8128861-8128941 2 2.00e-04 A TCTCTCCG TCTCCACTAC chrIII:4281074-4281154 23 2.00e-04 cctcactcac tcactcCC ACAGAGTGGA chrIII:9705470-9705550 18 2.20e-04 AGCGGCACTA TTTTTCTC GCACACATAC chrI:10469062-10469142 23 2.20e-04 CCAAACCCTA TTTTTCTC GAAGAAAACG chrI:4201643-4201723 12 2.76e-04 GAGAATGCCA TTTCTCAC CTTCCTCACT chrX:5056376-5056456 63 2.76e-04 ccactatatt ttactctc tgtggcttcc chrI:10026052-10026132 7 2.95e-04 GGAACA TTTTTCCC CAGTGGGACG chrV:20424920-20425000 41 2.95e-04 TTTCGCGGCG TTTTTCCC AATGGTGGCC chrX:2599007-2599087 2 3.51e-04 c tctctttc tAGTCTCACA chrX:2793735-2793815 1 3.51e-04 . TTACTCCC CGCCAAAGCA chrI:13421198-13421278 45 3.51e-04 CTCCGCCTCT TTTCTCCG GGTTTCTGGT chrI:11095937-11096017 10 3.51e-04 GTTTCTGAG TTTCTCCG CCGCCGAAGC chrX:15275159-15275239 6 4.23e-04 CGTAG TCTTTCTG CGTTGTATAC chrV:7465664-7465744 12 4.23e-04 GTATCCAACG TCTCTCGC CGTTTTTGTT chrI:3603482-3603562 13 4.23e-04 ACTAGTCTAG TCTTTCTG CCATAATTCG chrIV:1896402-1896482 48 4.73e-04 TTTCTTGTCA TCACTCAC AAAAGATTAG chrX:14027040-14027120 54 4.73e-04 CCACCCACCG TCACTCTG TCTTCATATT chrIV:6747840-6747920 48 4.92e-04 AACACACTTT TCTCTTCC ATTTTCGCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCYC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17184486-17184566 1.9e-05 6_[+3]_66 chrIV:10085875-10085955 1.9e-05 66_[+3]_6 chrIV:11315050-11315130 1.9e-05 68_[+3]_4 chrX:15108071-15108151 1.9e-05 46_[+3]_26 chrI:1559264-1559344 1.9e-05 16_[+3]_56 chrI:1315631-1315711 1.9e-05 37_[+3]_35 chrI:2299627-2299707 1.9e-05 15_[+3]_57 chrX:13675679-13675759 1.9e-05 40_[+3]_32 chrV:3218781-3218861 1.9e-05 16_[+3]_56 chrI:4475212-4475292 1.9e-05 22_[+3]_50 chrV:20832815-20832895 3.6e-05 50_[+3]_22 chrIV:572638-572718 3.6e-05 41_[+3]_31 chrIV:12370677-12370757 3.6e-05 58_[+3]_14 chrX:12655470-12655550 5.6e-05 50_[+3]_22 chrI:933477-933557 5.6e-05 33_[+3]_39 chrX:7562758-7562838 7.5e-05 23_[+3]_49 chrII:13817427-13817507 7.5e-05 61_[+3]_11 chrIV:17099269-17099349 9.4e-05 56_[+3]_16 chrI:7772600-7772680 9.4e-05 [+3]_72 chrIV:8334102-8334182 0.00015 13_[+3]_59 chrIV:7235493-7235573 0.00015 15_[+3]_57 chrX:9113950-9114030 0.00015 27_[+3]_45 chrII:4392587-4392667 0.00015 32_[+3]_40 chrII:8128861-8128941 0.0002 1_[+3]_71 chrIII:4281074-4281154 0.0002 22_[+3]_50 chrIII:9705470-9705550 0.00022 17_[+3]_55 chrI:10469062-10469142 0.00022 22_[+3]_50 chrI:4201643-4201723 0.00028 11_[+3]_61 chrX:5056376-5056456 0.00028 62_[+3]_10 chrI:10026052-10026132 0.0003 6_[+3]_66 chrV:20424920-20425000 0.0003 40_[+3]_32 chrX:2599007-2599087 0.00035 1_[+3]_71 chrX:2793735-2793815 0.00035 [+3]_72 chrI:13421198-13421278 0.00035 44_[+3]_28 chrI:11095937-11096017 0.00035 9_[+3]_63 chrX:15275159-15275239 0.00042 5_[+3]_67 chrV:7465664-7465744 0.00042 11_[+3]_61 chrI:3603482-3603562 0.00042 12_[+3]_60 chrIV:1896402-1896482 0.00047 47_[+3]_25 chrX:14027040-14027120 0.00047 53_[+3]_19 chrIV:6747840-6747920 0.00049 47_[+3]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCYC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCTCYC width=8 seqs=41 chrX:17184486-17184566 ( 7) TCTCTCTC 1 chrIV:10085875-10085955 ( 67) TCTCTCTC 1 chrIV:11315050-11315130 ( 69) TCTCTCTC 1 chrX:15108071-15108151 ( 47) TCTCTCTC 1 chrI:1559264-1559344 ( 17) TCTCTCTC 1 chrI:1315631-1315711 ( 38) TCTCTCTC 1 chrI:2299627-2299707 ( 16) TCTCTCTC 1 chrX:13675679-13675759 ( 41) TCTCTCTC 1 chrV:3218781-3218861 ( 17) TCTCTCTC 1 chrI:4475212-4475292 ( 23) TCTCTCTC 1 chrV:20832815-20832895 ( 51) TCTCTCCC 1 chrIV:572638-572718 ( 42) TCTCTCCC 1 chrIV:12370677-12370757 ( 59) TCTCTCCC 1 chrX:12655470-12655550 ( 51) TTTCTCTC 1 chrI:933477-933557 ( 34) TTTCTCTC 1 chrX:7562758-7562838 ( 24) TTTCTCCC 1 chrII:13817427-13817507 ( 62) TTTCTCCC 1 chrIV:17099269-17099349 ( 57) TCTTTCTC 1 chrI:7772600-7772680 ( 1) TCTTTCTC 1 chrIV:8334102-8334182 ( 14) TCTCTCAC 1 chrIV:7235493-7235573 ( 16) TCACTCTC 1 chrX:9113950-9114030 ( 28) TCTCTCAC 1 chrII:4392587-4392667 ( 33) TCTCTCTG 1 chrII:8128861-8128941 ( 2) TCTCTCCG 1 chrIII:4281074-4281154 ( 23) TCACTCCC 1 chrIII:9705470-9705550 ( 18) TTTTTCTC 1 chrI:10469062-10469142 ( 23) TTTTTCTC 1 chrI:4201643-4201723 ( 12) TTTCTCAC 1 chrX:5056376-5056456 ( 63) TTACTCTC 1 chrI:10026052-10026132 ( 7) TTTTTCCC 1 chrV:20424920-20425000 ( 41) TTTTTCCC 1 chrX:2599007-2599087 ( 2) TCTCTTTC 1 chrX:2793735-2793815 ( 1) TTACTCCC 1 chrI:13421198-13421278 ( 45) TTTCTCCG 1 chrI:11095937-11096017 ( 10) TTTCTCCG 1 chrX:15275159-15275239 ( 6) TCTTTCTG 1 chrV:7465664-7465744 ( 12) TCTCTCGC 1 chrI:3603482-3603562 ( 13) TCTTTCTG 1 chrIV:1896402-1896482 ( 48) TCACTCAC 1 chrX:14027040-14027120 ( 54) TCACTCTG 1 chrIV:6747840-6747920 ( 48) TCTCTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCYC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2866 E= 1.1e+004 -1200 -1200 -1200 192 -1200 145 -1200 27 -72 -1200 -1200 170 -1200 169 -1200 -43 -1200 -1200 -1200 192 -1200 193 -1200 -243 -131 35 -333 109 -1200 173 -52 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCYC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 1.1e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.682927 0.000000 0.317073 0.146341 0.000000 0.000000 0.853659 0.000000 0.804878 0.000000 0.195122 0.000000 0.000000 0.000000 1.000000 0.000000 0.951220 0.000000 0.048780 0.097561 0.317073 0.024390 0.560976 0.000000 0.829268 0.170732 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCYC MEME-3 regular expression -------------------------------------------------------------------------------- T[CT]TCTC[TC]C -------------------------------------------------------------------------------- Time 17.08 secs. ******************************************************************************** ******************************************************************************** MOTIF GRRAGRAG MEME-4 width = 8 sites = 28 llr = 234 E-value = 9.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRRAGRAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :45a35a: pos.-specific C :1:::::: probability G a55:75:a matrix T :::::::: bits 2.0 * * ** 1.8 * * ** 1.6 * * ** 1.4 * * ** Relative 1.2 * ** ** Entropy 1.0 * ****** (12.1 bits) 0.8 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGAGAAG consensus AA AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRAGRAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1120520-1120600 34 1.25e-05 AAGATGACAG GGGAGAAG ACATGGGCCA chrIII:4281074-4281154 42 1.25e-05 CAGAGTGGAC GGGAGAAG GAATGATGCT chrII:5772985-5773065 56 4.99e-05 CATTACTGCG GGAAGAAG AGAGCGCACT chrX:6252245-6252325 19 4.99e-05 AGGGAGAAGG GGGAGGAG AGCAGGCACA chrIII:844173-844253 29 4.99e-05 TTCGTTGATG GGAAGAAG GCTGCTGTGT chrV:10717118-10717198 31 4.99e-05 GCTGAGCGAT GGGAGGAG TTTTCCCGCC chrX:10394308-10394388 3 4.99e-05 TT GGAAGAAG TTAGCTGTAG chrM:1848-1928 5 4.99e-05 ATTG GGAAGAAG ACAAAATCGT chrIII:11290698-11290778 18 8.71e-05 ATCCTTGTCC GAGAGGAG TACACACCGG chrV:11029439-11029519 18 8.71e-05 AAATTTATCC GAGAGGAG TACACTAGTG chrIV:8066701-8066781 42 8.71e-05 CCCATGAGAT GAAAGAAG GAGGAGTGCG chrX:5763975-5764055 25 8.71e-05 GGACAGTGAG GGAAGGAG CGATGAGCGA chrIII:8144730-8144810 32 8.71e-05 GGCTCTGTCC GAGAGGAG TACACACAGC chrIII:4450859-4450939 56 8.71e-05 GCGGGATGTG GAGAGGAG ACACCTCAAA chrI:3350082-3350162 2 9.95e-05 G GAAAGGAG ACGGAGAAAC chrI:3738279-3738359 12 9.95e-05 GGTGTGCCGA GAAAGGAG ATGCGTTCGC chrIII:11848461-11848541 46 9.95e-05 AGGCCCCACA GAAAGGAG GCCCCACCAC chrV:12896044-12896124 43 1.12e-04 GGCGGTAGGA GGGAAAAG TGACAAATGC chrII:4392587-4392667 69 1.12e-04 TGCCTTTTTT GGGAAAAG CTTC chrII:6734846-6734926 24 1.49e-04 GTGTCTCAAC GAGAAAAG CAAACGCGCT chrII:4394641-4394721 45 1.49e-04 GAAGAGAAAG GAGAAAAG ATAAGCTTGA chrX:15275159-15275239 69 1.86e-04 AGAGAGATAT GGAAAGAG AGAT chrV:3587747-3587827 38 1.86e-04 AACGGCACAG GAAAAAAG GGCGGAGTCG chrIV:6747840-6747920 2 1.86e-04 C GAGAAGAG TACACGGAGG chrIII:3499981-3500061 67 1.86e-04 GAGGCCCCAC GGAAAGAG GATCTG chrI:10642457-10642537 51 2.10e-04 AATGAGAACT GCGAGAAG TAGAACTACG chrIII:13474605-13474685 29 2.10e-04 ACAGAGATTT GCGAGAAG CAGAAACGTG chrX:15108071-15108151 5 2.36e-04 CTGC GCAAGAAG CGCCCTGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRAGRAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1120520-1120600 1.3e-05 33_[+4]_39 chrIII:4281074-4281154 1.3e-05 41_[+4]_31 chrII:5772985-5773065 5e-05 55_[+4]_17 chrX:6252245-6252325 5e-05 18_[+4]_54 chrIII:844173-844253 5e-05 28_[+4]_44 chrV:10717118-10717198 5e-05 30_[+4]_42 chrX:10394308-10394388 5e-05 2_[+4]_70 chrM:1848-1928 5e-05 4_[+4]_68 chrIII:11290698-11290778 8.7e-05 17_[+4]_55 chrV:11029439-11029519 8.7e-05 17_[+4]_55 chrIV:8066701-8066781 8.7e-05 41_[+4]_31 chrX:5763975-5764055 8.7e-05 24_[+4]_48 chrIII:8144730-8144810 8.7e-05 31_[+4]_41 chrIII:4450859-4450939 8.7e-05 55_[+4]_17 chrI:3350082-3350162 9.9e-05 1_[+4]_71 chrI:3738279-3738359 9.9e-05 11_[+4]_61 chrIII:11848461-11848541 9.9e-05 45_[+4]_27 chrV:12896044-12896124 0.00011 42_[+4]_30 chrII:4392587-4392667 0.00011 68_[+4]_4 chrII:6734846-6734926 0.00015 23_[+4]_49 chrII:4394641-4394721 0.00015 44_[+4]_28 chrX:15275159-15275239 0.00019 68_[+4]_4 chrV:3587747-3587827 0.00019 37_[+4]_35 chrIV:6747840-6747920 0.00019 1_[+4]_71 chrIII:3499981-3500061 0.00019 66_[+4]_6 chrI:10642457-10642537 0.00021 50_[+4]_22 chrIII:13474605-13474685 0.00021 28_[+4]_44 chrX:15108071-15108151 0.00024 4_[+4]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRAGRAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRRAGRAG width=8 seqs=28 chrX:1120520-1120600 ( 34) GGGAGAAG 1 chrIII:4281074-4281154 ( 42) GGGAGAAG 1 chrII:5772985-5773065 ( 56) GGAAGAAG 1 chrX:6252245-6252325 ( 19) GGGAGGAG 1 chrIII:844173-844253 ( 29) GGAAGAAG 1 chrV:10717118-10717198 ( 31) GGGAGGAG 1 chrX:10394308-10394388 ( 3) GGAAGAAG 1 chrM:1848-1928 ( 5) GGAAGAAG 1 chrIII:11290698-11290778 ( 18) GAGAGGAG 1 chrV:11029439-11029519 ( 18) GAGAGGAG 1 chrIV:8066701-8066781 ( 42) GAAAGAAG 1 chrX:5763975-5764055 ( 25) GGAAGGAG 1 chrIII:8144730-8144810 ( 32) GAGAGGAG 1 chrIII:4450859-4450939 ( 56) GAGAGGAG 1 chrI:3350082-3350162 ( 2) GAAAGGAG 1 chrI:3738279-3738359 ( 12) GAAAGGAG 1 chrIII:11848461-11848541 ( 46) GAAAGGAG 1 chrV:12896044-12896124 ( 43) GGGAAAAG 1 chrII:4392587-4392667 ( 69) GGGAAAAG 1 chrII:6734846-6734926 ( 24) GAGAAAAG 1 chrII:4394641-4394721 ( 45) GAGAAAAG 1 chrX:15275159-15275239 ( 69) GGAAAGAG 1 chrV:3587747-3587827 ( 38) GAAAAAAG 1 chrIV:6747840-6747920 ( 2) GAGAAGAG 1 chrIII:3499981-3500061 ( 67) GGAAAGAG 1 chrI:10642457-10642537 ( 51) GCGAGAAG 1 chrIII:13474605-13474685 ( 29) GCGAGAAG 1 chrX:15108071-15108151 ( 5) GCAAGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRAGRAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.95252 E= 9.7e+003 -1145 -1145 203 -1145 82 -122 92 -1145 94 -1145 113 -1145 205 -1145 -1145 -1145 24 -1145 154 -1145 115 -1145 92 -1145 205 -1145 -1145 -1145 -1145 -1145 203 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRAGRAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 9.7e+003 0.000000 0.000000 1.000000 0.000000 0.428571 0.107143 0.464286 0.000000 0.464286 0.000000 0.535714 0.000000 1.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.714286 0.000000 0.535714 0.000000 0.464286 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRAGRAG MEME-4 regular expression -------------------------------------------------------------------------------- G[GA][GA]A[GA][AG]AG -------------------------------------------------------------------------------- Time 20.64 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAHTTTT MEME-5 width = 8 sites = 39 llr = 305 E-value = 2.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAHTTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1165:::: pos.-specific C 9713:::: probability G :::::::: matrix T :233aaaa bits 2.0 1.8 **** 1.6 **** 1.4 * **** Relative 1.2 * **** Entropy 1.0 ** **** (11.3 bits) 0.8 ** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCAATTTT consensus TTT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAHTTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:4426924-4427004 3 1.75e-05 TT CCAATTTT AGTATATGTT chrI:5281831-5281911 39 1.75e-05 TATTTGCGCG CCAATTTT GAAATTTATA chrI:10026052-10026132 48 1.75e-05 CGCTCTACTG CCAATTTT CAAAAACGGA chrI:3603482-3603562 50 1.75e-05 TTTCAAATTT CCAATTTT TCAGATGACT chrI:7251654-7251734 2 1.75e-05 C CCAATTTT CAGTAGTGCG chrIV:12584271-12584351 21 3.65e-05 TATACTATTT CCATTTTT GAGCAGCCCG chrV:11124091-11124171 59 3.65e-05 GGTTCCTCGG CCATTTTT ATCGGCCCTC chrI:14606049-14606129 40 3.65e-05 CTGGCTCCGC CCATTTTT CTGCGCACCC chrII:4381306-4381386 4 3.65e-05 AAC CCATTTTT CCGATTCCAA chrV:9625816-9625896 51 5.46e-05 TGCTCCAGCT CCACTTTT GGCTCCACCA chrII:7001569-7001649 23 7.37e-05 CGGCCCTTCA CCTATTTT TGACCTGTTA chrIII:3601437-3601517 14 7.37e-05 ACGGGCCACG CCTATTTT CATGCAACTG chrX:8638960-8639040 45 7.37e-05 AATACTTTTT CCTATTTT AAACTTTAGA chrII:6383385-6383465 42 1.13e-04 TTTTTATTCA CCTTTTTT TAACAAAAAA chrV:13171258-13171338 13 1.13e-04 GATTGTTTGT CCTTTTTT CCGCGTGCGC chrV:5284755-5284835 65 1.13e-04 GTCAGAGTCA CTAATTTT GGTGAACG chrII:4392587-4392667 61 1.13e-04 GTTAAAGTTG CCTTTTTT GGGAAAAGCT chrX:14115631-14115711 17 1.32e-04 TCCCCCAGCC CCTCTTTT TTTGTTATAG chrI:10037672-10037752 53 1.32e-04 AGCCCGGAGG CCTCTTTT GCCCCCGCTG chrI:13422654-13422734 17 1.32e-04 CCACAAAACT CCTCTTTT TGTGAAACCT chrV:11029439-11029519 49 1.51e-04 GACTAACTAT CCCATTTT CGATTTCTGC chrI:1213521-1213601 41 1.51e-04 TTTCGTAGAT CCCATTTT CAAAGATAGC chrIV:1687231-1687311 20 1.51e-04 TCCGATAACC CCCATTTT GCAGTGCCTC chrII:5836440-5836520 71 1.87e-04 GTCTATCGAA CTATTTTT GA chrI:3176586-3176666 72 1.87e-04 GAGATCTGCG ACAATTTT G chrIII:9052778-9052858 36 1.87e-04 ACATTAGACG ACAATTTT TCATGGAAAC chrM:3561-3641 69 1.87e-04 GAGGTCTATT ACAATTTT TTAT chrM:11657-11737 44 1.87e-04 ATTAATATTT CTATTTTT TTGATTGGAT chrIV:17268921-17269001 22 1.87e-04 TCGGCTGACT CTATTTTT TCCTCTCCAC chrI:1315631-1315711 13 2.07e-04 tgtctctctg ctactttt tcctctctga chrII:8325317-8325397 2 2.07e-04 G CTACTTTT GAAATTTGCA chrIV:11315050-11315130 55 2.46e-04 GCTGAGTTTT CTTATTTT TATGTTTCTC chrIII:10123783-10123863 6 2.65e-04 CTGCT CCCCTTTT CGTGGGGCCT chrIII:3499981-3500061 5 2.65e-04 ATTT CCCCTTTT CGTTCAGTTC chrM:4630-4710 9 2.83e-04 TAACAGGT ACATTTTT AGCATTTTAT chrI:4475212-4475292 39 3.01e-04 tctctctctc ACACTTTT TTAACCACAA chrV:20424920-20425000 19 3.58e-04 TTTTTCGATT CAAATTTT CCCATTTCGC chrV:3218781-3218861 61 3.58e-04 TATTGACATG CAAATTTT ACTACTCCTA chrI:9910721-9910801 31 3.79e-04 GAGACTCCGC CTTCTTTT GGACAGTAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAHTTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4426924-4427004 1.8e-05 2_[+5]_70 chrI:5281831-5281911 1.8e-05 38_[+5]_34 chrI:10026052-10026132 1.8e-05 47_[+5]_25 chrI:3603482-3603562 1.8e-05 49_[+5]_23 chrI:7251654-7251734 1.8e-05 1_[+5]_71 chrIV:12584271-12584351 3.7e-05 20_[+5]_52 chrV:11124091-11124171 3.7e-05 58_[+5]_14 chrI:14606049-14606129 3.7e-05 39_[+5]_33 chrII:4381306-4381386 3.7e-05 3_[+5]_69 chrV:9625816-9625896 5.5e-05 50_[+5]_22 chrII:7001569-7001649 7.4e-05 22_[+5]_50 chrIII:3601437-3601517 7.4e-05 13_[+5]_59 chrX:8638960-8639040 7.4e-05 44_[+5]_28 chrII:6383385-6383465 0.00011 41_[+5]_31 chrV:13171258-13171338 0.00011 12_[+5]_60 chrV:5284755-5284835 0.00011 64_[+5]_8 chrII:4392587-4392667 0.00011 60_[+5]_12 chrX:14115631-14115711 0.00013 16_[+5]_56 chrI:10037672-10037752 0.00013 52_[+5]_20 chrI:13422654-13422734 0.00013 16_[+5]_56 chrV:11029439-11029519 0.00015 48_[+5]_24 chrI:1213521-1213601 0.00015 40_[+5]_32 chrIV:1687231-1687311 0.00015 19_[+5]_53 chrII:5836440-5836520 0.00019 70_[+5]_2 chrI:3176586-3176666 0.00019 71_[+5]_1 chrIII:9052778-9052858 0.00019 35_[+5]_37 chrM:3561-3641 0.00019 68_[+5]_4 chrM:11657-11737 0.00019 43_[+5]_29 chrIV:17268921-17269001 0.00019 21_[+5]_51 chrI:1315631-1315711 0.00021 12_[+5]_60 chrII:8325317-8325397 0.00021 1_[+5]_71 chrIV:11315050-11315130 0.00025 54_[+5]_18 chrIII:10123783-10123863 0.00026 5_[+5]_67 chrIII:3499981-3500061 0.00026 4_[+5]_68 chrM:4630-4710 0.00028 8_[+5]_64 chrI:4475212-4475292 0.0003 38_[+5]_34 chrV:20424920-20425000 0.00036 18_[+5]_54 chrV:3218781-3218861 0.00036 60_[+5]_12 chrI:9910721-9910801 0.00038 30_[+5]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAHTTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAHTTTT width=8 seqs=39 chrIII:4426924-4427004 ( 3) CCAATTTT 1 chrI:5281831-5281911 ( 39) CCAATTTT 1 chrI:10026052-10026132 ( 48) CCAATTTT 1 chrI:3603482-3603562 ( 50) CCAATTTT 1 chrI:7251654-7251734 ( 2) CCAATTTT 1 chrIV:12584271-12584351 ( 21) CCATTTTT 1 chrV:11124091-11124171 ( 59) CCATTTTT 1 chrI:14606049-14606129 ( 40) CCATTTTT 1 chrII:4381306-4381386 ( 4) CCATTTTT 1 chrV:9625816-9625896 ( 51) CCACTTTT 1 chrII:7001569-7001649 ( 23) CCTATTTT 1 chrIII:3601437-3601517 ( 14) CCTATTTT 1 chrX:8638960-8639040 ( 45) CCTATTTT 1 chrII:6383385-6383465 ( 42) CCTTTTTT 1 chrV:13171258-13171338 ( 13) CCTTTTTT 1 chrV:5284755-5284835 ( 65) CTAATTTT 1 chrII:4392587-4392667 ( 61) CCTTTTTT 1 chrX:14115631-14115711 ( 17) CCTCTTTT 1 chrI:10037672-10037752 ( 53) CCTCTTTT 1 chrI:13422654-13422734 ( 17) CCTCTTTT 1 chrV:11029439-11029519 ( 49) CCCATTTT 1 chrI:1213521-1213601 ( 41) CCCATTTT 1 chrIV:1687231-1687311 ( 20) CCCATTTT 1 chrII:5836440-5836520 ( 71) CTATTTTT 1 chrI:3176586-3176666 ( 72) ACAATTTT 1 chrIII:9052778-9052858 ( 36) ACAATTTT 1 chrM:3561-3641 ( 69) ACAATTTT 1 chrM:11657-11737 ( 44) CTATTTTT 1 chrIV:17268921-17269001 ( 22) CTATTTTT 1 chrI:1315631-1315711 ( 13) CTACTTTT 1 chrII:8325317-8325397 ( 2) CTACTTTT 1 chrIV:11315050-11315130 ( 55) CTTATTTT 1 chrIII:10123783-10123863 ( 6) CCCCTTTT 1 chrIII:3499981-3500061 ( 5) CCCCTTTT 1 chrM:4630-4710 ( 9) ACATTTTT 1 chrI:4475212-4475292 ( 39) ACACTTTT 1 chrV:20424920-20425000 ( 19) CAAATTTT 1 chrV:3218781-3218861 ( 61) CAAATTTT 1 chrI:9910721-9910801 ( 31) CTTCTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAHTTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.78941 E= 2.6e+003 -92 180 -1193 -1193 -224 158 -1193 -36 129 -96 -1193 10 93 4 -1193 10 -1193 -1193 -1193 192 -1193 -1193 -1193 192 -1193 -1193 -1193 192 -1193 -1193 -1193 192 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAHTTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 2.6e+003 0.128205 0.871795 0.000000 0.000000 0.051282 0.743590 0.000000 0.205128 0.589744 0.128205 0.000000 0.282051 0.461538 0.256410 0.000000 0.282051 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAHTTTT MEME-5 regular expression -------------------------------------------------------------------------------- C[CT][AT][ATC]TTTT -------------------------------------------------------------------------------- Time 24.16 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:4392587-4392667 1.24e-03 80 chrII:4394641-4394721 3.37e-02 39_[+4(9.95e-05)]_33 chrM:1848-1928 3.18e-02 4_[+4(4.99e-05)]_68 chrIII:11093643-11093723 6.55e-01 80 chrX:8182000-8182080 9.26e-01 80 chrII:4373093-4373173 9.73e-01 80 chrX:5056376-5056456 1.55e-01 80 chrII:11044370-11044450 7.07e-01 80 chrV:16553036-16553116 2.39e-01 80 chrII:14406847-14406927 7.50e-02 33_[+1(5.02e-05)]_39 chrIV:13021540-13021620 9.50e-01 80 chrM:5146-5226 8.96e-01 80 chrIV:1687231-1687311 3.54e-03 80 chrIV:12370677-12370757 1.08e-01 58_[+3(3.65e-05)]_14 chrIV:17268921-17269001 1.72e-01 80 chrII:4381306-4381386 2.70e-02 3_[+5(3.65e-05)]_69 chrM:3257-3337 4.97e-01 80 chrX:5816493-5816573 6.39e-01 80 chrX:5205704-5205784 2.30e-02 40_[+2(1.54e-05)]_32 chrII:13817427-13817507 1.21e-02 61_[+3(7.48e-05)]_11 chrV:5284755-5284835 2.65e-01 80 chrII:4385613-4385693 8.56e-01 80 chrI:933477-933557 7.46e-02 33_[+3(5.61e-05)]_39 chrIII:4450859-4450939 1.60e-02 33_[+1(7.49e-05)]_14_[+4(8.71e-05)]_\ 17 chrII:11398793-11398873 2.34e-01 80 chrM:11657-11737 1.43e-01 80 chrII:4392792-4392872 5.87e-02 3_[+1(1.24e-05)]_69 chrM:10076-10156 9.92e-01 80 chrX:10394308-10394388 2.28e-02 2_[+4(4.99e-05)]_70 chrM:4947-5027 5.79e-01 80 chrI:9910721-9910801 1.27e-01 80 chrV:12510085-12510165 6.82e-01 80 chrIII:13474605-13474685 1.49e-01 80 chrI:4475212-4475292 1.71e-02 20_[+3(1.87e-05)]_[+3(1.87e-05)]_44 chrV:11844983-11845063 7.03e-01 80 chrI:12899126-12899206 3.79e-01 80 chrII:4395925-4396005 8.20e-01 80 chrIV:3476678-3476758 9.62e-01 80 chrIII:3499981-3500061 2.49e-02 80 chrM:3561-3641 2.97e-02 80 chrI:13422654-13422734 3.19e-02 80 chrI:1213521-1213601 2.70e-01 80 chrIII:931568-931648 2.83e-02 33_[+1(5.02e-05)]_39 chrIII:4196717-4196797 6.44e-02 36_[+2(1.54e-05)]_36 chrIII:4281074-4281154 1.23e-03 41_[+4(1.25e-05)]_31 chrI:2487856-2487936 8.72e-01 80 chrX:7562758-7562838 7.67e-02 23_[+3(7.48e-05)]_49 chrV:10717118-10717198 4.03e-02 30_[+4(4.99e-05)]_42 chrII:3055735-3055815 8.07e-01 80 chrI:7251654-7251734 5.94e-03 1_[+5(1.75e-05)]_71 chrII:10202484-10202564 5.26e-02 80 chrX:3994574-3994654 6.58e-01 80 chrIII:10856978-10857058 9.33e-01 80 chrI:11092184-11092264 3.17e-02 28_[+1(1.24e-05)]_44 chrM:3011-3091 3.28e-01 80 chrM:8958-9038 9.19e-01 80 chrM:8228-8308 9.27e-02 80 chrI:12593081-12593161 4.71e-02 80 chrI:10469062-10469142 8.13e-03 18_[+5(7.37e-05)]_54 chrX:9506434-9506514 6.58e-01 80 chrII:1421833-1421913 9.99e-01 80 chrI:6760298-6760378 9.34e-03 20_[+2(2.97e-05)]_52 chrIV:3521100-3521180 7.71e-01 80 chrX:2552373-2552453 4.05e-02 80 chrII:8358622-8358702 8.02e-01 80 chrIV:572638-572718 4.16e-02 41_[+3(3.65e-05)]_31 chrX:14027040-14027120 4.28e-01 80 chrII:5933247-5933327 5.85e-01 80 chrV:12896044-12896124 8.95e-03 25_[+4(8.71e-05)]_47 chrV:3218781-3218861 1.95e-02 14_[+3(1.87e-05)]_58 chrX:13143335-13143415 5.90e-01 80 chrI:15041630-15041710 6.53e-03 33_[+1(2.46e-05)]_39 chrII:11185140-11185220 1.74e-01 80 chrI:2710668-2710748 8.14e-01 80 chrIII:10123783-10123863 3.45e-01 80 chrM:7258-7338 4.69e-01 80 chrIII:9052778-9052858 1.51e-01 80 chrIII:11848461-11848541 1.04e-01 45_[+4(9.95e-05)]_27 chrIII:8262762-8262842 9.46e-01 80 chrI:3603482-3603562 1.13e-02 49_[+5(1.75e-05)]_23 chrI:13817532-13817612 2.57e-01 80 chrIV:9048257-9048337 3.65e-01 80 chrIII:3476338-3476418 2.14e-02 23_[+2(4.46e-05)]_49 chrIV:1896402-1896482 2.70e-01 80 chrX:9917530-9917610 6.33e-02 80 chrX:2885492-2885572 1.74e-03 66_[+1(3.68e-05)]_6 chrX:13675679-13675759 1.12e-01 30_[+3(1.87e-05)]_[+3(1.87e-05)]_14_\ [+3(7.48e-05)]_12 chrI:14863537-14863617 4.54e-02 80 chrI:173903-173983 9.16e-01 80 chrII:8325317-8325397 8.56e-02 80 chrX:8638960-8639040 3.24e-02 44_[+5(7.37e-05)]_28 chrI:10037672-10037752 4.93e-04 27_[+1(2.46e-05)]_45 chrX:8806574-8806654 1.63e-01 80 chrII:12175494-12175574 9.98e-01 80 chrIII:13225186-13225266 9.26e-01 80 chrI:11095937-11096017 1.65e-03 55_[+1(1.24e-05)]_17 chrIV:12615608-12615688 4.08e-01 80 chrI:4201643-4201723 1.12e-01 80 chrI:14612815-14612895 3.61e-02 15_[+1(7.49e-05)]_57 chrV:13415710-13415790 4.09e-01 80 chrI:13421198-13421278 1.53e-02 80 chrIV:14032705-14032785 8.73e-01 80 chrII:6734846-6734926 2.43e-02 80 chrI:7935747-7935827 3.52e-01 80 chrII:15089573-15089653 7.19e-01 80 chrV:155402-155482 5.86e-03 17_[+1(3.68e-05)]_55 chrIII:3601437-3601517 1.35e-01 13_[+5(7.37e-05)]_59 chrIII:8144730-8144810 2.16e-02 31_[+4(8.71e-05)]_41 chrIV:11310769-11310849 6.79e-02 80 chrI:2299627-2299707 2.42e-02 15_[+3(1.87e-05)]_57 chrIV:9316174-9316254 4.51e-01 80 chrV:6880791-6880871 3.32e-01 80 chrX:3343841-3343921 9.15e-01 80 chrIV:1981071-1981151 9.46e-01 80 chrIV:521561-521641 9.94e-01 80 chrM:6036-6116 5.48e-01 80 chrM:1054-1134 5.06e-01 80 chrII:6943883-6943963 2.93e-01 80 chrX:10990744-10990824 9.76e-01 80 chrX:5591962-5592042 7.64e-01 80 chrX:11248247-11248327 3.63e-01 80 chrX:12902372-12902452 8.85e-01 80 chrV:13171258-13171338 6.56e-02 80 chrI:1315631-1315711 1.32e-02 35_[+3(1.87e-05)]_37 chrV:4373183-4373263 7.35e-01 80 chrI:3176586-3176666 1.34e-02 80 chrIII:13187928-13188008 4.71e-01 80 chrIV:6747840-6747920 2.07e-04 80 chrIII:2293266-2293346 8.92e-01 80 chrX:3348066-3348146 8.64e-01 80 chrI:1559264-1559344 1.07e-01 16_[+3(1.87e-05)]_56 chrV:13411460-13411540 9.83e-01 80 chrV:20424920-20425000 7.37e-04 53_[+2(1.54e-05)]_19 chrIII:8529133-8529213 5.69e-01 80 chrIII:4905517-4905597 8.82e-01 80 chrIV:17183237-17183317 9.27e-01 80 chrIII:11091804-11091884 1.14e-01 80 chrX:5763975-5764055 5.80e-03 24_[+4(8.71e-05)]_48 chrX:2879768-2879848 8.94e-01 80 chrX:2878232-2878312 4.13e-01 80 chrIV:14496611-14496691 7.76e-01 80 chrX:5518508-5518588 4.40e-01 80 chrII:5836440-5836520 5.76e-03 46_[+1(8.70e-05)]_26 chrX:2793735-2793815 2.65e-01 80 chrII:13975264-13975344 6.14e-01 80 chrII:8128861-8128941 3.09e-03 71_[+1(6.27e-05)]_1 chrIII:7088081-7088161 5.44e-01 80 chrX:9113950-9114030 1.92e-01 80 chrX:15108071-15108151 2.32e-03 46_[+3(1.87e-05)]_26 chrII:10761837-10761917 5.52e-02 80 chrM:2115-2195 2.00e-01 80 chrX:12890291-12890371 8.94e-01 80 chrI:14606049-14606129 7.94e-03 39_[+5(3.65e-05)]_33 chrIII:844173-844253 1.22e-01 28_[+4(4.99e-05)]_44 chrI:9116055-9116135 8.44e-03 39_[+2(4.46e-05)]_33 chrIII:8650402-8650482 9.56e-02 62_[+1(8.70e-05)]_10 chrII:8927405-8927485 4.45e-03 6_[+2(2.97e-05)]_66 chrIV:11315050-11315130 1.26e-03 68_[+3(1.87e-05)]_4 chrIV:8973697-8973777 5.59e-02 80 chrI:6136567-6136647 9.45e-01 80 chrV:7746007-7746087 3.10e-01 80 chrV:7465664-7465744 1.03e-03 62_[+2(1.54e-05)]_10 chrI:3738279-3738359 6.62e-02 11_[+4(9.95e-05)]_61 chrI:7772600-7772680 3.82e-02 [+3(9.45e-05)]_72 chrV:12353646-12353726 9.86e-01 80 chrV:11644276-11644356 1.34e-01 66_[+2(1.54e-05)]_6 chrIII:5308422-5308502 2.55e-02 2_[+2(1.54e-05)]_23_[+2(2.97e-05)]_\ 39 chrI:12899346-12899426 4.83e-01 80 chrI:9051214-9051294 5.39e-02 80 chrX:5480339-5480419 6.30e-01 80 chrI:1415957-1416037 6.36e-01 80 chrX:7569801-7569881 1.06e-02 44_[+2(1.54e-05)]_28 chrIII:5136383-5136463 1.10e-01 80 chrIV:10085875-10085955 1.90e-02 58_[+3(1.87e-05)]_[+3(1.87e-05)]_6 chrIV:8066701-8066781 1.45e-02 41_[+4(8.71e-05)]_31 chrX:11384793-11384873 5.36e-01 80 chrV:4964334-4964414 1.65e-01 80 chrII:6741597-6741677 2.22e-01 80 chrII:8062408-8062488 9.05e-01 80 chrV:11029439-11029519 3.16e-03 17_[+4(8.71e-05)]_55 chrIII:11290698-11290778 6.51e-03 17_[+4(8.71e-05)]_11_[+2(2.97e-05)]_\ 36 chrV:9625816-9625896 2.76e-01 50_[+5(5.46e-05)]_22 chrV:13704088-13704168 3.23e-01 80 chrIII:9191332-9191412 4.21e-01 80 chrI:10026052-10026132 9.04e-03 47_[+5(1.75e-05)]_25 chrIII:3664381-3664461 1.02e-01 80 chrIII:1218374-1218454 9.99e-01 80 chrV:11080498-11080578 2.20e-02 80 chrV:1474739-1474819 9.54e-01 80 chrIV:7235493-7235573 2.03e-01 80 chrM:4630-4710 5.41e-01 80 chrV:11124091-11124171 3.00e-02 58_[+5(3.65e-05)]_14 chrIII:7199006-7199086 1.38e-02 10_[+2(1.54e-05)]_62 chrIV:17099269-17099349 5.60e-02 56_[+3(9.45e-05)]_16 chrV:10356096-10356176 4.82e-01 80 chrIII:1824652-1824732 7.15e-01 80 chrIII:7642153-7642233 7.83e-01 80 chrM:8435-8515 7.61e-01 80 chrI:5281831-5281911 2.19e-02 38_[+5(1.75e-05)]_34 chrI:9448141-9448221 9.33e-01 80 chrIII:13360073-13360153 6.74e-02 80 chrII:7001569-7001649 3.07e-02 22_[+5(7.37e-05)]_50 chrIII:6551593-6551673 6.50e-01 80 chrM:9158-9238 6.66e-01 80 chrIII:3175136-3175216 3.01e-01 80 chrV:20832815-20832895 9.70e-02 50_[+3(3.65e-05)]_22 chrM:6241-6321 4.44e-01 80 chrI:10642457-10642537 1.35e-01 80 chrIII:9705470-9705550 6.50e-02 80 chrX:8053075-8053155 8.48e-01 80 chrV:5846753-5846833 8.75e-03 63_[+4(8.71e-05)]_9 chrV:3587747-3587827 1.63e-01 80 chrX:15275159-15275239 8.94e-04 53_[+1(1.24e-05)]_10_[+1(7.49e-05)]_\ 1 chrII:6383385-6383465 3.61e-02 80 chrIV:8334102-8334182 1.60e-01 80 chrX:9822731-9822811 1.56e-01 80 chrX:6252245-6252325 1.39e-03 9_[+4(1.25e-05)]_1_[+4(4.99e-05)]_\ 54 chrII:12042372-12042452 9.15e-01 80 chrII:5819816-5819896 1.82e-01 80 chrV:9293420-9293500 9.73e-01 80 chrII:6411872-6411952 6.64e-01 80 chrIV:6631966-6632046 1.23e-02 80 chrV:11239362-11239442 4.52e-01 80 chrII:3567767-3567847 9.74e-01 80 chrX:17184486-17184566 6.51e-02 6_[+3(1.87e-05)]_66 chrII:4238035-4238115 8.27e-01 80 chrX:2599007-2599087 2.59e-01 80 chrIV:12584271-12584351 5.04e-02 20_[+5(3.65e-05)]_52 chrX:8556831-8556911 7.85e-01 80 chrII:7708721-7708801 4.83e-01 80 chrIII:4426924-4427004 1.57e-02 2_[+5(1.75e-05)]_70 chrV:13393451-13393531 9.41e-01 80 chrIV:2033181-2033261 3.88e-01 80 chrIV:7387283-7387363 1.96e-02 42_[+1(5.02e-05)]_30 chrX:14115631-14115711 1.63e-02 80 chrIV:1388208-1388288 8.87e-01 80 chrII:9308867-9308947 4.86e-03 9_[+1(1.24e-05)]_[+4(8.71e-05)]_55 chrII:14528396-14528476 3.92e-01 80 chrIV:5334724-5334804 9.84e-01 80 chrI:3350082-3350162 1.47e-02 1_[+4(9.95e-05)]_71 chrX:4265748-4265828 2.80e-01 80 chrI:7084516-7084596 4.03e-01 80 chrIII:5769872-5769952 2.33e-02 38_[+2(2.97e-05)]_34 chrX:1120520-1120600 5.14e-03 33_[+4(1.25e-05)]_39 chrX:12655470-12655550 1.76e-01 50_[+3(5.61e-05)]_22 chrI:13310354-13310434 9.98e-01 80 chrII:5772985-5773065 4.16e-02 55_[+4(4.99e-05)]_17 chrIV:3232981-3233061 9.10e-01 80 chrV:2673997-2674077 9.04e-02 27_[+2(5.85e-05)]_45 chrX:8156098-8156178 4.46e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************