******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/fkh-3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:8962973-8963053 1.0000 80 chrI:8963194-8963274 1.0000 80 chrII:4042543-4042623 1.0000 80 chrIII:12372839-12372919 1.0000 80 chrII:5937121-5937201 1.0000 80 chrIV:2314267-2314347 1.0000 80 chrIII:8980494-8980574 1.0000 80 chrIV:2678319-2678399 1.0000 80 chrII:11908414-11908494 1.0000 80 chrIII:6932033-6932113 1.0000 80 chrII:7100876-7100956 1.0000 80 chrIII:6969672-6969752 1.0000 80 chrIV:5087050-5087130 1.0000 80 chrV:15000409-15000489 1.0000 80 chrV:1466005-1466085 1.0000 80 chrIV:15854219-15854299 1.0000 80 chrII:13919290-13919370 1.0000 80 chrI:11952807-11952887 1.0000 80 chrV:20241457-20241537 1.0000 80 chrIV:7800545-7800625 1.0000 80 chrIV:7962251-7962331 1.0000 80 chrIII:13615683-13615763 1.0000 80 chrIII:13347122-13347202 1.0000 80 chrX:644623-644703 1.0000 80 chrII:4228613-4228693 1.0000 80 chrV:4190395-4190475 1.0000 80 chrII:10546012-10546092 1.0000 80 chrII:7319717-7319797 1.0000 80 chrIV:2766175-2766255 1.0000 80 chrIII:1938010-1938090 1.0000 80 chrX:6522842-6522922 1.0000 80 chrII:10246994-10247074 1.0000 80 chrI:5620840-5620920 1.0000 80 chrIII:1625792-1625872 1.0000 80 chrIV:15899523-15899603 1.0000 80 chrIV:4360228-4360308 1.0000 80 chrIV:16333189-16333269 1.0000 80 chrIII:7495025-7495105 1.0000 80 chrI:12861832-12861912 1.0000 80 chrIV:2891787-2891867 1.0000 80 chrIII:3793793-3793873 1.0000 80 chrIII:12499510-12499590 1.0000 80 chrX:5106412-5106492 1.0000 80 chrIII:5446678-5446758 1.0000 80 chrII:6889603-6889683 1.0000 80 chrV:5844037-5844117 1.0000 80 chrX:3752575-3752655 1.0000 80 chrV:1262487-1262567 1.0000 80 chrIV:13300389-13300469 1.0000 80 chrIII:7338738-7338818 1.0000 80 chrX:5214970-5215050 1.0000 80 chrIV:4652538-4652618 1.0000 80 chrII:14155863-14155943 1.0000 80 chrX:17674501-17674581 1.0000 80 chrIV:6526619-6526699 1.0000 80 chrIII:9462807-9462887 1.0000 80 chrX:11114567-11114647 1.0000 80 chrII:4858095-4858175 1.0000 80 chrV:4284095-4284175 1.0000 80 chrIV:2497842-2497922 1.0000 80 chrIII:159941-160021 1.0000 80 chrI:5372266-5372346 1.0000 80 chrII:12111247-12111327 1.0000 80 chrIII:13411330-13411410 1.0000 80 chrIV:15038992-15039072 1.0000 80 chrI:8827723-8827803 1.0000 80 chrV:15547835-15547915 1.0000 80 chrIV:866732-866812 1.0000 80 chrIII:12607399-12607479 1.0000 80 chrI:8495793-8495873 1.0000 80 chrX:10667046-10667126 1.0000 80 chrI:10776375-10776455 1.0000 80 chrX:4193203-4193283 1.0000 80 chrX:6875756-6875836 1.0000 80 chrII:10547443-10547523 1.0000 80 chrIV:13239251-13239331 1.0000 80 chrI:812408-812488 1.0000 80 chrIII:5230652-5230732 1.0000 80 chrII:4802806-4802886 1.0000 80 chrIII:7141581-7141661 1.0000 80 chrIV:11147200-11147280 1.0000 80 chrII:11880703-11880783 1.0000 80 chrV:5275835-5275915 1.0000 80 chrV:10887475-10887555 1.0000 80 chrII:5575046-5575126 1.0000 80 chrV:18575219-18575299 1.0000 80 chrII:12736742-12736822 1.0000 80 chrX:13543481-13543561 1.0000 80 chrIV:2770954-2771034 1.0000 80 chrII:13278744-13278824 1.0000 80 chrX:13350520-13350600 1.0000 80 chrV:5592025-5592105 1.0000 80 chrIV:11146208-11146288 1.0000 80 chrIV:10084594-10084674 1.0000 80 chrII:11451922-11452002 1.0000 80 chrIII:1616793-1616873 1.0000 80 chrV:2757791-2757871 1.0000 80 chrIV:8261453-8261533 1.0000 80 chrI:7656630-7656710 1.0000 80 chrX:2834733-2834813 1.0000 80 chrV:16377356-16377436 1.0000 80 chrIII:4172265-4172345 1.0000 80 chrI:12551676-12551756 1.0000 80 chrI:13576057-13576137 1.0000 80 chrII:5353835-5353915 1.0000 80 chrV:20756469-20756549 1.0000 80 chrI:13953381-13953461 1.0000 80 chrIV:6913022-6913102 1.0000 80 chrII:11376655-11376735 1.0000 80 chrV:5667464-5667544 1.0000 80 chrIV:8377511-8377591 1.0000 80 chrI:12596140-12596220 1.0000 80 chrI:13547398-13547478 1.0000 80 chrV:6559757-6559837 1.0000 80 chrV:15479994-15480074 1.0000 80 chrIV:3336739-3336819 1.0000 80 chrV:10238125-10238205 1.0000 80 chrV:116427-116507 1.0000 80 chrIV:17116503-17116583 1.0000 80 chrI:2717555-2717635 1.0000 80 chrV:10958527-10958607 1.0000 80 chrIV:1711206-1711286 1.0000 80 chrV:103035-103115 1.0000 80 chrV:8415266-8415346 1.0000 80 chrV:14240837-14240917 1.0000 80 chrI:12654739-12654819 1.0000 80 chrIII:12685911-12685991 1.0000 80 chrX:14938277-14938357 1.0000 80 chrI:2878572-2878652 1.0000 80 chrIII:5557457-5557537 1.0000 80 chrI:1154219-1154299 1.0000 80 chrIV:16503778-16503858 1.0000 80 chrIV:11528067-11528147 1.0000 80 chrI:7585129-7585209 1.0000 80 chrIII:2811479-2811559 1.0000 80 chrV:15454433-15454513 1.0000 80 chrV:7142733-7142813 1.0000 80 chrX:5368406-5368486 1.0000 80 chrIV:5541528-5541608 1.0000 80 chrIV:8286348-8286428 1.0000 80 chrII:8746407-8746487 1.0000 80 chrV:19430459-19430539 1.0000 80 chrI:6838276-6838356 1.0000 80 chrIII:4015409-4015489 1.0000 80 chrIII:7329442-7329522 1.0000 80 chrV:20162023-20162103 1.0000 80 chrIII:6195726-6195806 1.0000 80 chrX:8939588-8939668 1.0000 80 chrIII:13464672-13464752 1.0000 80 chrII:8441666-8441746 1.0000 80 chrIII:4491636-4491716 1.0000 80 chrIII:1420054-1420134 1.0000 80 chrIII:11091200-11091280 1.0000 80 chrI:2689161-2689241 1.0000 80 chrI:933435-933515 1.0000 80 chrV:5284759-5284839 1.0000 80 chrIV:4930869-4930949 1.0000 80 chrIII:8685926-8686006 1.0000 80 chrII:11096332-11096412 1.0000 80 chrX:16930918-16930998 1.0000 80 chrX:16894046-16894126 1.0000 80 chrV:13007215-13007295 1.0000 80 chrV:5838825-5838905 1.0000 80 chrI:12905871-12905951 1.0000 80 chrII:11731440-11731520 1.0000 80 chrI:13652559-13652639 1.0000 80 chrV:6278557-6278637 1.0000 80 chrII:6346668-6346748 1.0000 80 chrIII:4195456-4195536 1.0000 80 chrIII:6415385-6415465 1.0000 80 chrI:6219768-6219848 1.0000 80 chrIV:1769229-1769309 1.0000 80 chrV:9318215-9318295 1.0000 80 chrX:12347994-12348074 1.0000 80 chrIV:15933239-15933319 1.0000 80 chrI:871862-871942 1.0000 80 chrI:852194-852274 1.0000 80 chrI:13287205-13287285 1.0000 80 chrII:10553606-10553686 1.0000 80 chrX:11603406-11603486 1.0000 80 chrV:14354517-14354597 1.0000 80 chrI:9166991-9167071 1.0000 80 chrX:4453286-4453366 1.0000 80 chrII:12058383-12058463 1.0000 80 chrII:12542748-12542828 1.0000 80 chrV:5284433-5284513 1.0000 80 chrII:1323326-1323406 1.0000 80 chrX:6286309-6286389 1.0000 80 chrI:6163375-6163455 1.0000 80 chrX:9622761-9622841 1.0000 80 chrIV:10933801-10933881 1.0000 80 chrX:9078306-9078386 1.0000 80 chrIII:9824652-9824732 1.0000 80 chrIII:11921729-11921809 1.0000 80 chrIV:16399241-16399321 1.0000 80 chrI:7493083-7493163 1.0000 80 chrI:2410081-2410161 1.0000 80 chrII:8547124-8547204 1.0000 80 chrX:8646489-8646569 1.0000 80 chrIII:835961-836041 1.0000 80 chrIV:9477676-9477756 1.0000 80 chrIV:7043667-7043747 1.0000 80 chrIII:5211436-5211516 1.0000 80 chrI:7079494-7079574 1.0000 80 chrV:16592276-16592356 1.0000 80 chrIII:13464875-13464955 1.0000 80 chrIII:5506284-5506364 1.0000 80 chrV:8228721-8228801 1.0000 80 chrII:4942554-4942634 1.0000 80 chrV:4823922-4824002 1.0000 80 chrIV:11026156-11026236 1.0000 80 chrI:6164187-6164267 1.0000 80 chrI:4177517-4177597 1.0000 80 chrX:12458184-12458264 1.0000 80 chrIII:11830678-11830758 1.0000 80 chrV:53442-53522 1.0000 80 chrIII:11792778-11792858 1.0000 80 chrIII:9467346-9467426 1.0000 80 chrIII:5305874-5305954 1.0000 80 chrI:3805-3885 1.0000 80 chrV:12510131-12510211 1.0000 80 chrII:5599897-5599977 1.0000 80 chrIII:1604647-1604727 1.0000 80 chrI:11978741-11978821 1.0000 80 chrII:11149914-11149994 1.0000 80 chrIII:1600831-1600911 1.0000 80 chrV:7437031-7437111 1.0000 80 chrIII:11090163-11090243 1.0000 80 chrI:10175426-10175506 1.0000 80 chrIII:10214582-10214662 1.0000 80 chrI:2514321-2514401 1.0000 80 chrX:6903148-6903228 1.0000 80 chrX:15200908-15200988 1.0000 80 chrI:4645412-4645492 1.0000 80 chrII:11974813-11974893 1.0000 80 chrIV:10821605-10821685 1.0000 80 chrX:9237817-9237897 1.0000 80 chrIV:12417945-12418025 1.0000 80 chrV:6888971-6889051 1.0000 80 chrII:11759430-11759510 1.0000 80 chrII:15025691-15025771 1.0000 80 chrIII:4378692-4378772 1.0000 80 chrI:11579702-11579782 1.0000 80 chrX:13512029-13512109 1.0000 80 chrIV:4450071-4450151 1.0000 80 chrX:12563756-12563836 1.0000 80 chrX:1503804-1503884 1.0000 80 chrV:16370155-16370235 1.0000 80 chrII:6248625-6248705 1.0000 80 chrII:6968316-6968396 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_fkh-3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/fkh-3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.269 C 0.23 G 0.229 T 0.273 Background letter frequencies (from file dataset with add-one prior applied): A 0.268 C 0.23 G 0.229 T 0.273 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-1 width = 8 sites = 11 llr = 114 E-value = 7.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :7::::a: pos.-specific C :2:a:a:: probability G :1a::::a matrix T a:::a::: bits 2.1 ** * * 1.9 * ****** 1.7 * ****** 1.5 * ****** Relative 1.3 * ****** Entropy 1.1 * ****** (15.0 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12563756-12563836 39 1.48e-05 TGTGCCCTTA TAGCTCAG TGGTAGAGCG chrX:9237817-9237897 1 1.48e-05 . TAGCTCAG TGGTAGAGCG chrIII:5305874-5305954 38 1.48e-05 GGCGCCCTTA TAGCTCAG TGGTAGAGCG chrIII:11792778-11792858 11 1.48e-05 GACGCCCGTA TAGCTCAG TGGCAGAGCG chrI:6164187-6164267 11 1.48e-05 TATGCCGCCA TAGCTCAG TCGGTTAGAG chrX:6286309-6286389 19 1.48e-05 TGCGGGGGTA TAGCTCAG GGGTAGAGCG chrV:6559757-6559837 7 1.48e-05 GGGGTA TAGCTCAG TGGCAGAGCA chrV:2757791-2757871 18 1.48e-05 Aggacaagga tagctcag tcggtaatgg chrI:3805-3885 62 2.76e-05 GCCATCCTTC TCGCTCAG AGAATGGATT chrI:11952807-11952887 12 2.76e-05 ATTCCAGACG TCGCTCAG CAATAAATTT chrV:116427-116507 34 4.03e-05 GAAGCCCAGT TGGCTCAG CTGATGAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12563756-12563836 1.5e-05 38_[+1]_34 chrX:9237817-9237897 1.5e-05 [+1]_72 chrIII:5305874-5305954 1.5e-05 37_[+1]_35 chrIII:11792778-11792858 1.5e-05 10_[+1]_62 chrI:6164187-6164267 1.5e-05 10_[+1]_62 chrX:6286309-6286389 1.5e-05 18_[+1]_54 chrV:6559757-6559837 1.5e-05 6_[+1]_66 chrV:2757791-2757871 1.5e-05 17_[+1]_55 chrI:3805-3885 2.8e-05 61_[+1]_11 chrI:11952807-11952887 2.8e-05 11_[+1]_61 chrV:116427-116507 4e-05 33_[+1]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=11 chrX:12563756-12563836 ( 39) TAGCTCAG 1 chrX:9237817-9237897 ( 1) TAGCTCAG 1 chrIII:5305874-5305954 ( 38) TAGCTCAG 1 chrIII:11792778-11792858 ( 11) TAGCTCAG 1 chrI:6164187-6164267 ( 11) TAGCTCAG 1 chrX:6286309-6286389 ( 19) TAGCTCAG 1 chrV:6559757-6559837 ( 7) TAGCTCAG 1 chrV:2757791-2757871 ( 18) TAGCTCAG 1 chrI:3805-3885 ( 62) TCGCTCAG 1 chrI:11952807-11952887 ( 12) TCGCTCAG 1 chrV:116427-116507 ( 34) TGGCTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 7.7e+001 -1010 -1010 -1010 187 144 -34 -133 -1010 -1010 -1010 213 -1010 -1010 212 -1010 -1010 -1010 -1010 -1010 187 -1010 212 -1010 -1010 190 -1010 -1010 -1010 -1010 -1010 213 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 7.7e+001 0.000000 0.000000 0.000000 1.000000 0.727273 0.181818 0.090909 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 5.51 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAAAAAA MEME-2 width = 8 sites = 10 llr = 101 E-value = 6.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAAAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 7:aaaaaa pos.-specific C :::::::: probability G 3a:::::: matrix T :::::::: bits 2.1 * 1.9 ******* 1.7 ******* 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******** (14.6 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAAAAAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:4450071-4450151 62 2.27e-05 GAATTTTCCG AGAAAAAA TGGCGTCTCC chrII:5599897-5599977 5 2.27e-05 GGAA AGAAAAAA TCATTATATG chrII:11731440-11731520 9 2.27e-05 tgggacgt agaaaaaa tgcccaatca chrV:10238125-10238205 70 2.27e-05 TGATATTGAA AGAAAAAA CTG chrV:5275835-5275915 28 2.27e-05 TCAGGGGGCG AGAAAAAA TTGTGTGGGA chrIII:12499510-12499590 26 2.27e-05 TTGATTTTTG AGAAAAAA ACGTTGCTTT chrI:8962973-8963053 25 2.27e-05 CCTATGTTCG AGAAAAAA GTGAAGAAGA chrIII:13464875-13464955 69 4.22e-05 AATTTTTATT GGAAAAAA GTTA chrIII:13411330-13411410 15 4.22e-05 AAAATCAGGG GGAAAAAA TGACAAAACT chrIV:2678319-2678399 56 4.22e-05 ACGATTTGTT GGAAAAAA AATGCCATCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:4450071-4450151 2.3e-05 61_[+2]_11 chrII:5599897-5599977 2.3e-05 4_[+2]_68 chrII:11731440-11731520 2.3e-05 8_[+2]_64 chrV:10238125-10238205 2.3e-05 69_[+2]_3 chrV:5275835-5275915 2.3e-05 27_[+2]_45 chrIII:12499510-12499590 2.3e-05 25_[+2]_47 chrI:8962973-8963053 2.3e-05 24_[+2]_48 chrIII:13464875-13464955 4.2e-05 68_[+2]_4 chrIII:13411330-13411410 4.2e-05 14_[+2]_58 chrIV:2678319-2678399 4.2e-05 55_[+2]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAAAAAA width=8 seqs=10 chrIV:4450071-4450151 ( 62) AGAAAAAA 1 chrII:5599897-5599977 ( 5) AGAAAAAA 1 chrII:11731440-11731520 ( 9) AGAAAAAA 1 chrV:10238125-10238205 ( 70) AGAAAAAA 1 chrV:5275835-5275915 ( 28) AGAAAAAA 1 chrIII:12499510-12499590 ( 26) AGAAAAAA 1 chrI:8962973-8963053 ( 25) AGAAAAAA 1 chrIII:13464875-13464955 ( 69) GGAAAAAA 1 chrIII:13411330-13411410 ( 15) GGAAAAAA 1 chrIV:2678319-2678399 ( 56) GGAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0846 E= 6.3e+003 138 -997 39 -997 -997 -997 213 -997 190 -997 -997 -997 190 -997 -997 -997 190 -997 -997 -997 190 -997 -997 -997 190 -997 -997 -997 190 -997 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 6.3e+003 0.700000 0.000000 0.300000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAAAA MEME-2 regular expression -------------------------------------------------------------------------------- [AG]GAAAAAA -------------------------------------------------------------------------------- Time 10.15 secs. ******************************************************************************** ******************************************************************************** MOTIF RGGTTCGA MEME-3 width = 8 sites = 12 llr = 120 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGGTTCGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3:3::::a pos.-specific C :::::a:: probability G 7a8:::a: matrix T :::aa::: bits 2.1 * ** 1.9 * ***** 1.7 * ***** 1.5 * ***** Relative 1.3 ******* Entropy 1.1 ******** (14.4 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGTTCGA consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGTTCGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:11978741-11978821 72 1.26e-05 CATAAGGCCG GGGTTCGA T chrX:8646489-8646569 40 1.26e-05 CACGCGGCCC GGGTTCGA TTCCCGGCAT chrX:6286309-6286389 61 1.26e-05 GAGAAGTCTG GGGTTCGA TTCCCCATAC chrX:8939588-8939668 21 1.26e-05 TCGGGGGCGT GGGTTCGA ATCCCACTCT chrV:15547835-15547915 51 1.26e-05 GCTGCAAGCA GGGTTCGA ACCTACGCGG chrII:6248625-6248705 73 2.74e-05 CACACAATGT AGGTTCGA chrI:6164187-6164267 55 2.74e-05 CCAAGGTCGC AGGTTCGA CCCCTGCTGG chrX:4453286-4453366 34 2.74e-05 GGAGGCTAGT AGGTTCGA TTCCATTGTT chrIV:16333189-16333269 8 2.74e-05 agacctg aggttcga ggcctacggc chrIV:10933801-10933881 24 4.22e-05 CGTGCTTCGA GGATTCGA TCAGTTGCTC chrX:12347994-12348074 24 4.22e-05 GCACGAAGTG GGATTCGA ACCCACGCAC chrV:13007215-13007295 15 4.22e-05 CTGTCCAGAT GGATTCGA GCCACCACCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGTTCGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11978741-11978821 1.3e-05 71_[+3]_1 chrX:8646489-8646569 1.3e-05 39_[+3]_33 chrX:6286309-6286389 1.3e-05 60_[+3]_12 chrX:8939588-8939668 1.3e-05 20_[+3]_52 chrV:15547835-15547915 1.3e-05 50_[+3]_22 chrII:6248625-6248705 2.7e-05 72_[+3] chrI:6164187-6164267 2.7e-05 54_[+3]_18 chrX:4453286-4453366 2.7e-05 33_[+3]_39 chrIV:16333189-16333269 2.7e-05 7_[+3]_65 chrIV:10933801-10933881 4.2e-05 23_[+3]_49 chrX:12347994-12348074 4.2e-05 23_[+3]_49 chrV:13007215-13007295 4.2e-05 14_[+3]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGTTCGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGGTTCGA width=8 seqs=12 chrI:11978741-11978821 ( 72) GGGTTCGA 1 chrX:8646489-8646569 ( 40) GGGTTCGA 1 chrX:6286309-6286389 ( 61) GGGTTCGA 1 chrX:8939588-8939668 ( 21) GGGTTCGA 1 chrV:15547835-15547915 ( 51) GGGTTCGA 1 chrII:6248625-6248705 ( 73) AGGTTCGA 1 chrI:6164187-6164267 ( 55) AGGTTCGA 1 chrX:4453286-4453366 ( 34) AGGTTCGA 1 chrIV:16333189-16333269 ( 8) AGGTTCGA 1 chrIV:10933801-10933881 ( 24) GGATTCGA 1 chrX:12347994-12348074 ( 24) GGATTCGA 1 chrV:13007215-13007295 ( 15) GGATTCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGTTCGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 1.9e+003 31 -1023 154 -1023 -1023 -1023 213 -1023 -10 -1023 171 -1023 -1023 -1023 -1023 187 -1023 -1023 -1023 187 -1023 212 -1023 -1023 -1023 -1023 213 -1023 190 -1023 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGTTCGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.9e+003 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGTTCGA MEME-3 regular expression -------------------------------------------------------------------------------- [GA]G[GA]TTCGA -------------------------------------------------------------------------------- Time 13.92 secs. ******************************************************************************** ******************************************************************************** MOTIF GSTGGCGG MEME-4 width = 8 sites = 14 llr = 132 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSTGGCGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::2::::: pos.-specific C :51::a:: probability G a32aa:aa matrix T :25::::: bits 2.1 * ***** 1.9 * ***** 1.7 * ***** 1.5 * ***** Relative 1.3 * ***** Entropy 1.1 * ***** (13.6 bits) 0.9 * ***** 0.6 ** ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel GCTGGCGG consensus GA sequence TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGGCGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6164187-6164267 68 9.09e-06 TTCGACCCCT GCTGGCGG CAAAC chrV:16377356-16377436 67 9.09e-06 TACACATTAT GCTGGCGG CAGCGG chrIII:13347122-13347202 60 9.09e-06 TATTCCACGG GCTGGCGG CGATCAAAAA chrIII:6969672-6969752 6 9.09e-06 ATCAG GCTGGCGG AGATAACTCG chrIII:11830678-11830758 21 1.82e-05 AAATAGCGGT GGTGGCGG CGGACGTCGT chrIII:1938010-1938090 51 1.82e-05 aacaggccgt ggtggcgg cggctcaaca chrI:2514321-2514401 9 2.58e-05 GTGGTGTT GCGGGCGG CAGGCGAACG chrV:16370155-16370235 4 3.47e-05 GGC GCAGGCGG TAACGCGCTT chrIV:2891787-2891867 12 4.55e-05 CACGGTCAGT GTTGGCGG ACTTGAGCTC chrV:116427-116507 5 6.20e-05 GCCG GGAGGCGG AAGCCAAGAA chrI:12861832-12861912 17 6.20e-05 cccaagttat ggaggcgg agcgcaatga chrX:4453286-4453366 18 7.87e-05 GGCGGGAACG GTGGGCGG AGGCTAGTAG chrI:2717555-2717635 25 7.87e-05 TAATGCAGAG GTGGGcgg caaacgattt chrV:4284095-4284175 57 7.87e-05 atgacgtgag gccggcgg aaccccgaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGGCGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6164187-6164267 9.1e-06 67_[+4]_5 chrV:16377356-16377436 9.1e-06 66_[+4]_6 chrIII:13347122-13347202 9.1e-06 59_[+4]_13 chrIII:6969672-6969752 9.1e-06 5_[+4]_67 chrIII:11830678-11830758 1.8e-05 20_[+4]_52 chrIII:1938010-1938090 1.8e-05 50_[+4]_22 chrI:2514321-2514401 2.6e-05 8_[+4]_64 chrV:16370155-16370235 3.5e-05 3_[+4]_69 chrIV:2891787-2891867 4.6e-05 11_[+4]_61 chrV:116427-116507 6.2e-05 4_[+4]_68 chrI:12861832-12861912 6.2e-05 16_[+4]_56 chrX:4453286-4453366 7.9e-05 17_[+4]_55 chrI:2717555-2717635 7.9e-05 24_[+4]_48 chrV:4284095-4284175 7.9e-05 56_[+4]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGGCGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSTGGCGG width=8 seqs=14 chrI:6164187-6164267 ( 68) GCTGGCGG 1 chrV:16377356-16377436 ( 67) GCTGGCGG 1 chrIII:13347122-13347202 ( 60) GCTGGCGG 1 chrIII:6969672-6969752 ( 6) GCTGGCGG 1 chrIII:11830678-11830758 ( 21) GGTGGCGG 1 chrIII:1938010-1938090 ( 51) GGTGGCGG 1 chrI:2514321-2514401 ( 9) GCGGGCGG 1 chrV:16370155-16370235 ( 4) GCAGGCGG 1 chrIV:2891787-2891867 ( 12) GTTGGCGG 1 chrV:116427-116507 ( 5) GGAGGCGG 1 chrI:12861832-12861912 ( 17) GGAGGCGG 1 chrX:4453286-4453366 ( 18) GTGGGCGG 1 chrI:2717555-2717635 ( 25) GTGGGCGG 1 chrV:4284095-4284175 ( 57) GCCGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGGCGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5702 E= 1.6e+004 -1045 -1045 213 -1045 -1045 112 32 -35 -33 -168 -9 87 -1045 -1045 213 -1045 -1045 -1045 213 -1045 -1045 212 -1045 -1045 -1045 -1045 213 -1045 -1045 -1045 213 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGGCGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.6e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.285714 0.214286 0.214286 0.071429 0.214286 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGGCGG MEME-4 regular expression -------------------------------------------------------------------------------- G[CGT][TAG]GGCGG -------------------------------------------------------------------------------- Time 17.60 secs. ******************************************************************************** ******************************************************************************** MOTIF WTTTTSRR MEME-5 width = 8 sites = 41 llr = 316 E-value = 2.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTTTTSRR MEME-5 Description -------------------------------------------------------------------------------- Simplified A 4:::::56 pos.-specific C :::::62: probability G :::::434 matrix T 6aaaa::: bits 2.1 1.9 **** 1.7 **** 1.5 **** Relative 1.3 **** Entropy 1.1 ***** * (11.1 bits) 0.9 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTCAA consensus A GGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTTSRR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:9318215-9318295 65 2.51e-05 TCCAAATCTA TTTTTCAA TTCTGGAA chrIV:6913022-6913102 6 2.51e-05 CGCAA TTTTTCAA TGAAATATGT chrIV:11146208-11146288 66 2.51e-05 CAGCTAAATG TTTTTCAA GAGCAAA chrI:11952807-11952887 29 2.51e-05 GCAATAAATT TTTTTCAA AAAAAATTCA chrI:4645412-4645492 16 9.60e-05 TAGAATACCC ATTTTCAA TTCACAACAA chrIII:1604647-1604727 40 9.60e-05 AAAAATCGGA ATTTTCAA AAATATATTC chrV:4823922-4824002 59 9.60e-05 ACTTCATATC TTTTTGAA AAAAACCAGT chrX:8646489-8646569 68 9.60e-05 GGGAAGTTTC TTTTTGAA TTTTG chrX:8939588-8939668 65 9.60e-05 TTAGCCAACT TTTTTGAA TAAACCTT chrIII:5557457-5557537 10 9.60e-05 GTTCCCGCG TTTTTGAA AGTTCGAGGA chrIV:15899523-15899603 64 9.60e-05 CTTTATAAAA TTTTTGAA ACAGCAAGT chrX:9237817-9237897 73 1.17e-04 CCAGGAACTT TTTTTCGA chrX:15200908-15200988 60 1.17e-04 TTTTCTGCGT TTTTTCGA GATGTCCGCG chrII:6968316-6968396 49 1.84e-04 TTCCTTCCCT ATTTTCAG ATTCACTAAA chrII:6346668-6346748 21 1.84e-04 CTCTTATGAC ATTTTCAG ACGATGACAA chrIII:6195726-6195806 49 1.84e-04 gtacgacaaa tttttgag aaatacaaat chrV:20756469-20756549 25 1.84e-04 CACCTATACT ATTTTCAG CCATGAGTCA chrI:7656630-7656710 14 1.84e-04 AGGCAGCGGC ATTTTGAA ATCGAATTTC chrII:11880703-11880783 57 1.84e-04 GCCTCTACCG TTTTTGAG GTCGAACATT chrX:4193203-4193283 6 1.84e-04 TATAG ATTTTCAG AGTTTTCAAA chrI:10776375-10776455 57 1.84e-04 TCAGAGAATG ATTTTCAG ATTTTTCATA chrIV:2497842-2497922 21 1.84e-04 TTATTGGTAA ATTTTCAG AAAATTTCAA chrIV:2314267-2314347 9 1.84e-04 CGGCGGGA ATTTTGAA TTTTTGACTG chrII:11974813-11974893 44 2.45e-04 ttttaggtaa attttcga atttcagcga chrIII:9467346-9467426 68 2.45e-04 TTTTACTACG ATTTTCGA AAATA chrV:10958527-10958607 18 2.45e-04 GTTACAGTCA ATTTTCGA ACTGAATAAC chrI:13576057-13576137 56 2.45e-04 CGCCATTCAA ATTTTCGA TTGGAAATTT chrIII:1616793-1616873 53 2.45e-04 ttttagttta tttttgga tctttTTGAC chrII:4042543-4042623 10 2.45e-04 TTTCTGCAA ATTTTCGA ATAAAATGTT chrII:5353835-5353915 25 2.66e-04 GAACGCCAAA ATTTTGAG CCACTTGACC chrI:871862-871942 33 3.44e-04 TTTTCTAATG TTTTTGGG TCCCGTAGCG chrIV:15933239-15933319 60 3.44e-04 AACAAGTACG TTTTTCCA TTAACCAAAA chrII:8441666-8441746 46 3.44e-04 GGCTTTTCAT TTTTTGGG TATACTAGGG chrIII:12499510-12499590 42 3.44e-04 AAACGTTGCT TTTTTCCA GTAATGAGCG chrIV:2678319-2678399 30 3.44e-04 ACTTTTAGAT TTTTTGGG GGTATTACAC chrIII:12372839-12372919 43 3.44e-04 AAAATGTGAT TTTTTGGG ATTTTTTCTT chrI:2717555-2717635 42 4.23e-04 gcaaacgatt tttttccg gcaaatcggc chrX:2834733-2834813 43 4.23e-04 ATAGCAATAG TTTTTGCA CCATGTGGAA chrIV:4652538-4652618 65 4.23e-04 TTGCTCTTTA TTTTTCCG CGGGATGG chrV:15000409-15000489 55 4.23e-04 TCCTTGTCCC TTTTTGCA GTGAGCGACA chrIV:4450071-4450151 54 4.80e-04 AATTGGCTGA ATTTTCCG AGAAAAAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTTSRR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:9318215-9318295 2.5e-05 64_[+5]_8 chrIV:6913022-6913102 2.5e-05 5_[+5]_67 chrIV:11146208-11146288 2.5e-05 65_[+5]_7 chrI:11952807-11952887 2.5e-05 28_[+5]_44 chrI:4645412-4645492 9.6e-05 15_[+5]_57 chrIII:1604647-1604727 9.6e-05 39_[+5]_33 chrV:4823922-4824002 9.6e-05 58_[+5]_14 chrX:8646489-8646569 9.6e-05 67_[+5]_5 chrX:8939588-8939668 9.6e-05 64_[+5]_8 chrIII:5557457-5557537 9.6e-05 9_[+5]_63 chrIV:15899523-15899603 9.6e-05 63_[+5]_9 chrX:9237817-9237897 0.00012 72_[+5] chrX:15200908-15200988 0.00012 59_[+5]_13 chrII:6968316-6968396 0.00018 48_[+5]_24 chrII:6346668-6346748 0.00018 20_[+5]_52 chrIII:6195726-6195806 0.00018 48_[+5]_24 chrV:20756469-20756549 0.00018 24_[+5]_48 chrI:7656630-7656710 0.00018 13_[+5]_59 chrII:11880703-11880783 0.00018 56_[+5]_16 chrX:4193203-4193283 0.00018 5_[+5]_67 chrI:10776375-10776455 0.00018 56_[+5]_16 chrIV:2497842-2497922 0.00018 20_[+5]_52 chrIV:2314267-2314347 0.00018 8_[+5]_64 chrII:11974813-11974893 0.00024 43_[+5]_29 chrIII:9467346-9467426 0.00024 67_[+5]_5 chrV:10958527-10958607 0.00024 17_[+5]_55 chrI:13576057-13576137 0.00024 55_[+5]_17 chrIII:1616793-1616873 0.00024 52_[+5]_20 chrII:4042543-4042623 0.00024 9_[+5]_63 chrII:5353835-5353915 0.00027 24_[+5]_48 chrI:871862-871942 0.00034 32_[+5]_40 chrIV:15933239-15933319 0.00034 59_[+5]_13 chrII:8441666-8441746 0.00034 45_[+5]_27 chrIII:12499510-12499590 0.00034 41_[+5]_31 chrIV:2678319-2678399 0.00034 29_[+5]_43 chrIII:12372839-12372919 0.00034 42_[+5]_30 chrI:2717555-2717635 0.00042 41_[+5]_31 chrX:2834733-2834813 0.00042 42_[+5]_30 chrIV:4652538-4652618 0.00042 64_[+5]_8 chrV:15000409-15000489 0.00042 54_[+5]_18 chrIV:4450071-4450151 0.00048 53_[+5]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTTSRR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTTTTSRR width=8 seqs=41 chrV:9318215-9318295 ( 65) TTTTTCAA 1 chrIV:6913022-6913102 ( 6) TTTTTCAA 1 chrIV:11146208-11146288 ( 66) TTTTTCAA 1 chrI:11952807-11952887 ( 29) TTTTTCAA 1 chrI:4645412-4645492 ( 16) ATTTTCAA 1 chrIII:1604647-1604727 ( 40) ATTTTCAA 1 chrV:4823922-4824002 ( 59) TTTTTGAA 1 chrX:8646489-8646569 ( 68) TTTTTGAA 1 chrX:8939588-8939668 ( 65) TTTTTGAA 1 chrIII:5557457-5557537 ( 10) TTTTTGAA 1 chrIV:15899523-15899603 ( 64) TTTTTGAA 1 chrX:9237817-9237897 ( 73) TTTTTCGA 1 chrX:15200908-15200988 ( 60) TTTTTCGA 1 chrII:6968316-6968396 ( 49) ATTTTCAG 1 chrII:6346668-6346748 ( 21) ATTTTCAG 1 chrIII:6195726-6195806 ( 49) TTTTTGAG 1 chrV:20756469-20756549 ( 25) ATTTTCAG 1 chrI:7656630-7656710 ( 14) ATTTTGAA 1 chrII:11880703-11880783 ( 57) TTTTTGAG 1 chrX:4193203-4193283 ( 6) ATTTTCAG 1 chrI:10776375-10776455 ( 57) ATTTTCAG 1 chrIV:2497842-2497922 ( 21) ATTTTCAG 1 chrIV:2314267-2314347 ( 9) ATTTTGAA 1 chrII:11974813-11974893 ( 44) ATTTTCGA 1 chrIII:9467346-9467426 ( 68) ATTTTCGA 1 chrV:10958527-10958607 ( 18) ATTTTCGA 1 chrI:13576057-13576137 ( 56) ATTTTCGA 1 chrIII:1616793-1616873 ( 53) TTTTTGGA 1 chrII:4042543-4042623 ( 10) ATTTTCGA 1 chrII:5353835-5353915 ( 25) ATTTTGAG 1 chrI:871862-871942 ( 33) TTTTTGGG 1 chrIV:15933239-15933319 ( 60) TTTTTCCA 1 chrII:8441666-8441746 ( 46) TTTTTGGG 1 chrIII:12499510-12499590 ( 42) TTTTTCCA 1 chrIV:2678319-2678399 ( 30) TTTTTGGG 1 chrIII:12372839-12372919 ( 43) TTTTTGGG 1 chrI:2717555-2717635 ( 42) TTTTTCCG 1 chrX:2834733-2834813 ( 43) TTTTTGCA 1 chrIV:4652538-4652618 ( 65) TTTTTCCG 1 chrV:15000409-15000489 ( 55) TTTTTGCA 1 chrIV:4450071-4450151 ( 54) ATTTTCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTTSRR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2866 E= 2.0e+004 63 -1200 -1200 110 -1200 -1200 -1200 187 -1200 -1200 -1200 187 -1200 -1200 -1200 187 -1200 -1200 -1200 187 -1200 135 86 -1200 100 -43 36 -1200 118 -1200 77 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTTSRR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 2.0e+004 0.414634 0.000000 0.000000 0.585366 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.585366 0.414634 0.000000 0.536585 0.170732 0.292683 0.000000 0.609756 0.000000 0.390244 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTTSRR MEME-5 regular expression -------------------------------------------------------------------------------- [TA]TTTT[CG][AG][AG] -------------------------------------------------------------------------------- Time 21.24 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8962973-8963053 1.55e-02 24_[+2(2.27e-05)]_48 chrI:8963194-8963274 4.72e-01 80 chrII:4042543-4042623 6.69e-02 80 chrIII:12372839-12372919 3.78e-01 80 chrII:5937121-5937201 8.82e-01 80 chrIV:2314267-2314347 2.25e-01 80 chrIII:8980494-8980574 9.27e-01 80 chrIV:2678319-2678399 2.32e-02 55_[+2(4.22e-05)]_17 chrII:11908414-11908494 8.09e-01 80 chrIII:6932033-6932113 5.54e-01 80 chrII:7100876-7100956 7.44e-01 80 chrIII:6969672-6969752 2.67e-02 5_[+4(9.09e-06)]_67 chrIV:5087050-5087130 4.87e-01 80 chrV:15000409-15000489 1.79e-01 80 chrV:1466005-1466085 4.79e-01 80 chrIV:15854219-15854299 9.94e-01 80 chrII:13919290-13919370 9.11e-01 80 chrI:11952807-11952887 4.64e-04 11_[+1(2.76e-05)]_9_[+5(2.51e-05)]_\ 44 chrV:20241457-20241537 4.09e-01 80 chrIV:7800545-7800625 3.16e-01 80 chrIV:7962251-7962331 1.48e-01 80 chrIII:13615683-13615763 9.64e-01 80 chrIII:13347122-13347202 1.20e-02 59_[+4(9.09e-06)]_13 chrX:644623-644703 6.42e-01 80 chrII:4228613-4228693 8.39e-01 80 chrV:4190395-4190475 7.60e-01 80 chrII:10546012-10546092 8.50e-01 80 chrII:7319717-7319797 8.75e-01 80 chrIV:2766175-2766255 4.35e-01 80 chrIII:1938010-1938090 3.55e-02 50_[+4(1.82e-05)]_22 chrX:6522842-6522922 3.93e-01 80 chrII:10246994-10247074 9.49e-01 80 chrI:5620840-5620920 3.92e-01 80 chrIII:1625792-1625872 7.45e-01 80 chrIV:15899523-15899603 1.70e-01 63_[+5(9.60e-05)]_9 chrIV:4360228-4360308 2.81e-01 80 chrIV:16333189-16333269 1.02e-01 7_[+3(2.74e-05)]_65 chrIII:7495025-7495105 2.92e-01 80 chrI:12861832-12861912 4.85e-02 16_[+4(6.20e-05)]_56 chrIV:2891787-2891867 1.05e-01 11_[+4(4.55e-05)]_61 chrIII:3793793-3793873 2.69e-01 80 chrIII:12499510-12499590 2.42e-03 25_[+2(2.27e-05)]_47 chrX:5106412-5106492 7.83e-01 80 chrIII:5446678-5446758 1.24e-01 80 chrII:6889603-6889683 8.15e-01 80 chrV:5844037-5844117 4.91e-01 80 chrX:3752575-3752655 3.62e-01 80 chrV:1262487-1262567 4.37e-01 80 chrIV:13300389-13300469 4.88e-01 80 chrIII:7338738-7338818 8.04e-01 80 chrX:5214970-5215050 5.15e-01 80 chrIV:4652538-4652618 7.84e-02 80 chrII:14155863-14155943 6.50e-01 80 chrX:17674501-17674581 4.64e-01 80 chrIV:6526619-6526699 3.75e-01 80 chrIII:9462807-9462887 5.20e-01 80 chrX:11114567-11114647 7.14e-01 80 chrII:4858095-4858175 3.97e-01 80 chrV:4284095-4284175 1.10e-02 56_[+4(7.87e-05)]_16 chrIV:2497842-2497922 1.10e-01 80 chrIII:159941-160021 7.83e-01 80 chrI:5372266-5372346 3.71e-01 80 chrII:12111247-12111327 5.39e-01 80 chrIII:13411330-13411410 7.96e-02 14_[+2(4.22e-05)]_58 chrIV:15038992-15039072 1.87e-01 80 chrI:8827723-8827803 5.72e-01 80 chrV:15547835-15547915 4.83e-02 50_[+3(1.26e-05)]_22 chrIV:866732-866812 6.18e-01 80 chrIII:12607399-12607479 3.11e-01 80 chrI:8495793-8495873 3.00e-01 80 chrX:10667046-10667126 9.71e-01 80 chrI:10776375-10776455 2.74e-01 80 chrX:4193203-4193283 2.29e-01 80 chrX:6875756-6875836 1.87e-01 80 chrII:10547443-10547523 3.95e-01 80 chrIV:13239251-13239331 8.60e-01 80 chrI:812408-812488 4.30e-01 80 chrIII:5230652-5230732 5.00e-01 80 chrII:4802806-4802886 4.88e-01 80 chrIII:7141581-7141661 1.66e-01 80 chrIV:11147200-11147280 9.19e-01 80 chrII:11880703-11880783 1.66e-01 80 chrV:5275835-5275915 3.71e-03 27_[+2(2.27e-05)]_45 chrV:10887475-10887555 6.62e-01 80 chrII:5575046-5575126 5.17e-02 80 chrV:18575219-18575299 8.26e-01 80 chrII:12736742-12736822 6.78e-01 80 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chrI:13652559-13652639 6.78e-01 80 chrV:6278557-6278637 5.96e-01 80 chrII:6346668-6346748 7.37e-02 80 chrIII:4195456-4195536 6.67e-01 80 chrIII:6415385-6415465 7.05e-01 80 chrI:6219768-6219848 7.71e-01 80 chrIV:1769229-1769309 4.28e-01 80 chrV:9318215-9318295 1.23e-02 64_[+5(2.51e-05)]_8 chrX:12347994-12348074 1.63e-01 23_[+3(4.22e-05)]_49 chrIV:15933239-15933319 3.26e-01 80 chrI:871862-871942 2.07e-02 48_[+2(8.48e-05)]_24 chrI:852194-852274 3.84e-01 80 chrI:13287205-13287285 9.92e-01 80 chrII:10553606-10553686 2.70e-01 80 chrX:11603406-11603486 6.09e-01 80 chrV:14354517-14354597 3.80e-01 80 chrI:9166991-9167071 4.36e-01 80 chrX:4453286-4453366 1.60e-03 17_[+4(7.87e-05)]_8_[+3(2.74e-05)]_\ 39 chrII:12058383-12058463 9.26e-01 80 chrII:12542748-12542828 7.86e-01 80 chrV:5284433-5284513 7.79e-01 80 chrII:1323326-1323406 2.25e-01 80 chrX:6286309-6286389 1.01e-03 18_[+1(1.48e-05)]_34_[+3(1.26e-05)]_\ 12 chrI:6163375-6163455 9.94e-01 80 chrX:9622761-9622841 6.89e-01 80 chrIV:10933801-10933881 2.31e-02 23_[+3(4.22e-05)]_49 chrX:9078306-9078386 8.85e-01 80 chrIII:9824652-9824732 3.02e-01 80 chrIII:11921729-11921809 9.05e-01 80 chrIV:16399241-16399321 2.17e-01 80 chrI:7493083-7493163 7.50e-01 80 chrI:2410081-2410161 1.23e-01 80 chrII:8547124-8547204 4.02e-01 80 chrX:8646489-8646569 4.02e-03 39_[+3(1.26e-05)]_20_[+5(9.60e-05)]_\ 5 chrIII:835961-836041 4.57e-01 80 chrIV:9477676-9477756 6.55e-01 80 chrIV:7043667-7043747 1.14e-01 80 chrIII:5211436-5211516 7.52e-01 80 chrI:7079494-7079574 5.02e-01 80 chrV:16592276-16592356 8.63e-01 80 chrIII:13464875-13464955 7.29e-02 68_[+2(4.22e-05)]_4 chrIII:5506284-5506364 8.19e-01 80 chrV:8228721-8228801 9.49e-01 80 chrII:4942554-4942634 3.82e-01 80 chrV:4823922-4824002 1.34e-02 11_[+2(8.48e-05)]_43_[+2(8.48e-05)]_\ 10 chrIV:11026156-11026236 9.72e-01 80 chrI:6164187-6164267 1.18e-05 10_[+1(1.48e-05)]_36_[+3(2.74e-05)]_\ 5_[+4(9.09e-06)]_5 chrI:4177517-4177597 4.84e-01 80 chrX:12458184-12458264 9.14e-01 80 chrIII:11830678-11830758 4.43e-02 20_[+4(1.82e-05)]_52 chrV:53442-53522 7.11e-01 80 chrIII:11792778-11792858 1.64e-03 10_[+1(1.48e-05)]_62 chrIII:9467346-9467426 1.37e-01 80 chrIII:5305874-5305954 7.65e-02 37_[+1(1.48e-05)]_35 chrI:3805-3885 8.79e-02 61_[+1(2.76e-05)]_11 chrV:12510131-12510211 1.00e+00 80 chrII:5599897-5599977 5.77e-02 4_[+2(2.27e-05)]_68 chrIII:1604647-1604727 1.43e-02 39_[+5(9.60e-05)]_33 chrI:11978741-11978821 9.62e-03 71_[+3(1.26e-05)]_1 chrII:11149914-11149994 6.64e-01 80 chrIII:1600831-1600911 5.51e-01 80 chrV:7437031-7437111 4.35e-01 80 chrIII:11090163-11090243 9.30e-01 80 chrI:10175426-10175506 4.36e-01 80 chrIII:10214582-10214662 4.61e-01 80 chrI:2514321-2514401 6.99e-02 8_[+4(2.58e-05)]_64 chrX:6903148-6903228 4.12e-01 80 chrX:15200908-15200988 1.54e-01 80 chrI:4645412-4645492 2.92e-01 15_[+5(9.60e-05)]_57 chrII:11974813-11974893 1.72e-01 80 chrIV:10821605-10821685 9.78e-01 80 chrX:9237817-9237897 2.49e-04 [+1(1.48e-05)]_72 chrIV:12417945-12418025 7.44e-01 80 chrV:6888971-6889051 1.61e-01 80 chrII:11759430-11759510 6.06e-01 80 chrII:15025691-15025771 9.21e-01 80 chrIII:4378692-4378772 7.03e-01 80 chrI:11579702-11579782 1.12e-01 80 chrX:13512029-13512109 9.89e-01 80 chrIV:4450071-4450151 1.21e-02 61_[+2(2.27e-05)]_11 chrX:12563756-12563836 1.15e-01 38_[+1(1.48e-05)]_34 chrX:1503804-1503884 3.62e-01 80 chrV:16370155-16370235 2.57e-02 3_[+4(3.47e-05)]_69 chrII:6248625-6248705 1.15e-02 72_[+3(2.74e-05)] chrII:6968316-6968396 4.07e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************