******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/fkh-10.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:14721277-14721357 1.0000 80 chrI:14747454-14747534 1.0000 80 chrX:16369123-16369203 1.0000 80 chrI:14736617-14736697 1.0000 80 chrI:14745095-14745175 1.0000 80 chrI:14740120-14740200 1.0000 80 chrI:14727988-14728068 1.0000 80 chrI:14729006-14729086 1.0000 80 chrI:14726461-14726541 1.0000 80 chrI:14722458-14722538 1.0000 80 chrI:14754241-14754321 1.0000 80 chrI:14724088-14724168 1.0000 80 chrI:14755268-14755348 1.0000 80 chrI:14728597-14728677 1.0000 80 chrX:16369620-16369700 1.0000 80 chrX:16365290-16365370 1.0000 80 chrI:14741534-14741614 1.0000 80 chrI:14746018-14746098 1.0000 80 chrX:16345453-16345533 1.0000 80 chrI:14733261-14733341 1.0000 80 chrI:14727313-14727393 1.0000 80 chrI:14730715-14730795 1.0000 80 chrI:14752574-14752654 1.0000 80 chrI:14724473-14724553 1.0000 80 chrI:14725363-14725443 1.0000 80 chrX:16356961-16357041 1.0000 80 chrI:14720041-14720121 1.0000 80 chrI:14753537-14753617 1.0000 80 chrI:14749430-14749510 1.0000 80 chrIII:13526896-13526976 1.0000 80 chrX:16379016-16379096 1.0000 80 chrIV:8181600-8181680 1.0000 80 chrX:16346912-16346992 1.0000 80 chrX:16352657-16352737 1.0000 80 chrI:14734859-14734939 1.0000 80 chrI:14730203-14730283 1.0000 80 chrI:14731678-14731758 1.0000 80 chrIII:6317476-6317556 1.0000 80 chrX:16347528-16347608 1.0000 80 chrIV:7027973-7028053 1.0000 80 chrM:3974-4054 1.0000 80 chrX:16366674-16366754 1.0000 80 chrM:10436-10516 1.0000 80 chrIII:208974-209054 1.0000 80 chrI:14738970-14739050 1.0000 80 chrII:4133444-4133524 1.0000 80 chrI:14755473-14755553 1.0000 80 chrM:13141-13221 1.0000 80 chrM:2691-2771 1.0000 80 chrIV:3859725-3859805 1.0000 80 chrM:7765-7845 1.0000 80 chrM:9752-9832 1.0000 80 chrI:14725789-14725869 1.0000 80 chrX:16344444-16344524 1.0000 80 chrI:14741736-14741816 1.0000 80 chrM:300-380 1.0000 80 chrI:794363-794443 1.0000 80 chrM:8520-8600 1.0000 80 chrII:1672517-1672597 1.0000 80 chrIII:13131423-13131503 1.0000 80 chrM:5547-5627 1.0000 80 chrX:16376183-16376263 1.0000 80 chrM:11488-11568 1.0000 80 chrX:16353724-16353804 1.0000 80 chrV:13024724-13024804 1.0000 80 chrI:14738736-14738816 1.0000 80 chrX:16372981-16373061 1.0000 80 chrIV:9065448-9065528 1.0000 80 chrIV:6065335-6065415 1.0000 80 chrV:11953840-11953920 1.0000 80 chrX:14649408-14649488 1.0000 80 chrX:16346127-16346207 1.0000 80 chrI:14191145-14191225 1.0000 80 chrI:14749638-14749718 1.0000 80 chrM:1333-1413 1.0000 80 chrI:14742299-14742379 1.0000 80 chrM:2897-2977 1.0000 80 chrII:12090018-12090098 1.0000 80 chrV:5200374-5200454 1.0000 80 chrX:8476492-8476572 1.0000 80 chrI:14736115-14736195 1.0000 80 chrIV:4586151-4586231 1.0000 80 chrIII:2914191-2914271 1.0000 80 chrI:14744299-14744379 1.0000 80 chrM:3667-3747 1.0000 80 chrV:1150454-1150534 1.0000 80 chrV:6227991-6228071 1.0000 80 chrIV:6366253-6366333 1.0000 80 chrX:10435780-10435860 1.0000 80 chrX:16363792-16363872 1.0000 80 chrX:4870806-4870886 1.0000 80 chrI:14738013-14738093 1.0000 80 chrM:6126-6206 1.0000 80 chrI:13373049-13373129 1.0000 80 chrIII:10284316-10284396 1.0000 80 chrII:11091706-11091786 1.0000 80 chrX:16361899-16361979 1.0000 80 chrIV:15017117-15017197 1.0000 80 chrII:5962436-5962516 1.0000 80 chrM:9093-9173 1.0000 80 chrI:14739727-14739807 1.0000 80 chrM:2186-2266 1.0000 80 chrIV:14371756-14371836 1.0000 80 chrI:14743331-14743411 1.0000 80 chrM:12417-12497 1.0000 80 chrI:3906379-3906459 1.0000 80 chrM:12696-12776 1.0000 80 chrI:9430641-9430721 1.0000 80 chrI:14346684-14346764 1.0000 80 chrM:4807-4887 1.0000 80 chrIV:11717600-11717680 1.0000 80 chrM:7123-7203 1.0000 80 chrV:18705430-18705510 1.0000 80 chrII:3999662-3999742 1.0000 80 chrIII:8588869-8588949 1.0000 80 chrV:7873126-7873206 1.0000 80 chrI:1062179-1062259 1.0000 80 chrII:7676647-7676727 1.0000 80 chrII:14569375-14569455 1.0000 80 chrX:1018724-1018804 1.0000 80 chrX:4315073-4315153 1.0000 80 chrX:3875873-3875953 1.0000 80 chrIV:7402244-7402324 1.0000 80 chrIV:7053388-7053468 1.0000 80 chrX:3191524-3191604 1.0000 80 chrX:16361144-16361224 1.0000 80 chrI:14735060-14735140 1.0000 80 chrIV:12771586-12771666 1.0000 80 chrIII:3543157-3543237 1.0000 80 chrX:2727854-2727934 1.0000 80 chrII:8559304-8559384 1.0000 80 chrII:15256073-15256153 1.0000 80 chrIV:1824187-1824267 1.0000 80 chrI:6579927-6580007 1.0000 80 chrV:9666628-9666708 1.0000 80 chrI:4298046-4298126 1.0000 80 chrII:73531-73611 1.0000 80 chrIII:10707182-10707262 1.0000 80 chrIV:10403479-10403559 1.0000 80 chrX:9337927-9338007 1.0000 80 chrII:14249622-14249702 1.0000 80 chrX:1522252-1522332 1.0000 80 chrI:6757194-6757274 1.0000 80 chrII:7327260-7327340 1.0000 80 chrX:12367664-12367744 1.0000 80 chrIV:14794428-14794508 1.0000 80 chrI:882909-882989 1.0000 80 chrIII:4568707-4568787 1.0000 80 chrV:12780407-12780487 1.0000 80 chrI:14737402-14737482 1.0000 80 chrX:949587-949667 1.0000 80 chrV:7111433-7111513 1.0000 80 chrV:11674801-11674881 1.0000 80 chrV:17858029-17858109 1.0000 80 chrI:4932860-4932940 1.0000 80 chrIV:2053560-2053640 1.0000 80 chrX:13143292-13143372 1.0000 80 chrI:10033109-10033189 1.0000 80 chrI:14756309-14756389 1.0000 80 chrIV:11026085-11026165 1.0000 80 chrX:952771-952851 1.0000 80 chrX:12407528-12407608 1.0000 80 chrX:16147868-16147948 1.0000 80 chrI:9988917-9988997 1.0000 80 chrX:4265591-4265671 1.0000 80 chrIV:6809851-6809931 1.0000 80 chrX:16796958-16797038 1.0000 80 chrV:12026975-12027055 1.0000 80 chrV:4731570-4731650 1.0000 80 chrIV:14464256-14464336 1.0000 80 chrIII:888109-888189 1.0000 80 chrI:7518526-7518606 1.0000 80 chrIII:10634212-10634292 1.0000 80 chrX:7651641-7651721 1.0000 80 chrIII:7723680-7723760 1.0000 80 chrIII:11371420-11371500 1.0000 80 chrX:15630926-15631006 1.0000 80 chrIV:11549870-11549950 1.0000 80 chrV:1871812-1871892 1.0000 80 chrX:15276940-15277020 1.0000 80 chrIV:11593647-11593727 1.0000 80 chrX:5812231-5812311 1.0000 80 chrX:6593587-6593667 1.0000 80 chrX:15275310-15275390 1.0000 80 chrI:5313301-5313381 1.0000 80 chrI:1444219-1444299 1.0000 80 chrIII:668334-668414 1.0000 80 chrX:871125-871205 1.0000 80 chrI:1958532-1958612 1.0000 80 chrX:9637799-9637879 1.0000 80 chrII:11635127-11635207 1.0000 80 chrII:11043127-11043207 1.0000 80 chrIII:8106651-8106731 1.0000 80 chrI:9077404-9077484 1.0000 80 chrIII:2786012-2786092 1.0000 80 chrX:7235056-7235136 1.0000 80 chrIV:6646129-6646209 1.0000 80 chrII:8796603-8796683 1.0000 80 chrIII:4171137-4171217 1.0000 80 chrX:1120518-1120598 1.0000 80 chrX:601394-601474 1.0000 80 chrIII:10461279-10461359 1.0000 80 chrIII:3664378-3664458 1.0000 80 chrII:5326413-5326493 1.0000 80 chrIV:1388178-1388258 1.0000 80 chrIII:6344930-6345010 1.0000 80 chrV:6267595-6267675 1.0000 80 chrI:12736838-12736918 1.0000 80 chrIII:2597224-2597304 1.0000 80 chrIV:322599-322679 1.0000 80 chrIII:13068435-13068515 1.0000 80 chrI:12995700-12995780 1.0000 80 chrV:7231016-7231096 1.0000 80 chrV:9731085-9731165 1.0000 80 chrII:8107291-8107371 1.0000 80 chrX:15742004-15742084 1.0000 80 chrX:5429499-5429579 1.0000 80 chrX:14016829-14016909 1.0000 80 chrI:535417-535497 1.0000 80 chrV:15551814-15551894 1.0000 80 chrI:382470-382550 1.0000 80 chrX:1856343-1856423 1.0000 80 chrI:8259528-8259608 1.0000 80 chrV:10871574-10871654 1.0000 80 chrI:8133795-8133875 1.0000 80 chrIV:8891308-8891388 1.0000 80 chrII:6491912-6491992 1.0000 80 chrII:9060464-9060544 1.0000 80 chrX:16682058-16682138 1.0000 80 chrI:14737624-14737704 1.0000 80 chrX:10568556-10568636 1.0000 80 chrV:8631560-8631640 1.0000 80 chrV:9503552-9503632 1.0000 80 chrIII:7155804-7155884 1.0000 80 chrIV:8375536-8375616 1.0000 80 chrII:6853204-6853284 1.0000 80 chrV:11610642-11610722 1.0000 80 chrX:11467460-11467540 1.0000 80 chrV:12318313-12318393 1.0000 80 chrV:19643185-19643265 1.0000 80 chrX:14115651-14115731 1.0000 80 chrIV:7574008-7574088 1.0000 80 chrII:5105228-5105308 1.0000 80 chrV:14351195-14351275 1.0000 80 chrX:2852669-2852749 1.0000 80 chrII:6331560-6331640 1.0000 80 chrI:9788740-9788820 1.0000 80 chrI:9688857-9688937 1.0000 80 chrIV:2599787-2599867 1.0000 80 chrX:13307025-13307105 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_fkh-10/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/fkh-10.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.271 C 0.221 G 0.231 T 0.278 Background letter frequencies (from file dataset with add-one prior applied): A 0.271 C 0.221 G 0.231 T 0.277 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTCTCTYT MEME-1 width = 8 sites = 40 llr = 320 E-value = 8.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTCTYT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::1::1 pos.-specific C 9:a:8:62 probability G 1:::12:1 matrix T :a:a2947 bits 2.2 * 2.0 * 1.7 *** 1.5 **** Relative 1.3 **** * Entropy 1.1 **** ** (11.5 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTYT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2852669-2852749 32 1.40e-05 TCCCACCATC CTCTCTCT CACTCTCACA chrV:14351195-14351275 4 1.40e-05 ACG ctctctct atctgctctc chrX:15276940-15277020 23 1.40e-05 ctctctctct ctctctct ACATTCCCTT chrIII:7723680-7723760 39 1.40e-05 TTTCCTCTCT CTCTCTCT CGTTCTTTGC chrI:882909-882989 72 1.40e-05 AGTtctatct ctctctct c chrIV:1824187-1824267 1 1.40e-05 . CTCTCTCT CTCGAAAAAC chrIV:7402244-7402324 65 1.40e-05 AGCATCGGAG CTCTCTCT CGTTCTCT chrI:14346684-14346764 55 1.40e-05 TCTTCACCCT CTCTCTCT CAGCGAATCA chrIV:6646129-6646209 53 3.16e-05 AGAAGATTGT CTCTCTTT CTCTTCCAAT chrX:7651641-7651721 37 3.16e-05 TGCTGATCTC CTCTCTTT TTCTCATTCT chrV:5200374-5200454 21 3.16e-05 AGCACCGCAA CTCTCTTT CCTCTGTTAT chrII:1672517-1672597 8 3.16e-05 CAGCATT CTCTCTTT GGGCCATCAG chrIII:6317476-6317556 58 3.16e-05 ACCTCTAttt ctctcttt ctttcttatt chrIV:8181600-8181680 48 3.16e-05 TACTCTCTCA CTCTCTTT CCTGTGTAAC chrX:949587-949667 67 4.29e-05 TTGGTGGGTG ctctctcc ctctct chrI:4932860-4932940 41 5.46e-05 CTTCGTTCTC CTCTCGCT TCGTCGCCAT chrI:9430641-9430721 52 5.46e-05 GCTTCTTCGT CTCTCGCT GCTCATCCCA chrX:14016829-14016909 26 8.62e-05 CTTCTATCTT CTCTCTTC TTTTCAAAAC chrIII:6344930-6345010 31 8.62e-05 CTTTGTATGA CTCTCTTC GTTTCCCACA chrI:5313301-5313381 37 8.62e-05 CAGCGACCTT CTCTTTCT ACCCCCCTTT chrI:14738736-14738816 7 8.62e-05 TGAGAT CTCTTTCT GGTATTATCA chrIV:2599787-2599867 48 1.01e-04 CTGTGTCTGC Gtctctct gttctctgtt chrII:6491912-6491992 7 1.16e-04 GTCGTC CTCTCGTT CTCTTGCCGG chrX:5812231-5812311 53 1.27e-04 CCTATGTGTA CTCTCTCG GTTTTTCCGC chrII:11091706-11091786 57 1.49e-04 TTAGTTTTCC CTCTTTTT GGAAACGAAA chrV:7231016-7231096 56 1.63e-04 GCACGAATTC CTCTCTCA GTTTTTGTTC chrI:9077404-9077484 20 2.06e-04 GCGACGCGTA GTCTCTTT CGCACGCAAC chrV:17858029-17858109 13 2.06e-04 TTCCCTATTG CTCTGTCT GGTGACTCTC chrIV:10403479-10403559 29 2.06e-04 ACACATGCGT CTCTGTCT CCATTCTCTT chrIII:10284316-10284396 21 2.06e-04 TCGTGTCTGC GTCTCTTT GCCACCGTTC chrI:8133795-8133875 18 2.23e-04 GTCTCTGCGT CTCTATCT CTTCGCATCA chrI:6579927-6580007 3 2.23e-04 TC CTCTATCT GAGCATGAAC chrIV:2053560-2053640 4 2.37e-04 AAG CTCTTTCC TTCCTGATTT chrII:9060464-9060544 1 2.51e-04 . CTCTCTTG CATTCGAAAC chrX:16365290-16365370 11 2.63e-04 TGCGTTGATA GTCTCTCC TTTATCAATC chrV:7111433-7111513 43 2.80e-04 TGTGTCTGAG CTCTCTTA GCCTCTGTAC chrX:3191524-3191604 35 3.25e-04 GCGAGAGAGG CTCTCGTC AACTAAGTGA chrIV:14371756-14371836 49 3.25e-04 CCTTTGCACC CTCTTGCT GCAACAGCTT chrV:12318313-12318393 10 3.59e-04 ATAACGCAG GTCTCGCT TCGATGAGGG chrI:9788740-9788820 44 3.77e-04 GCGTTTTTGG CTCTTTTC GGCTATTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTYT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2852669-2852749 1.4e-05 31_[+1]_41 chrV:14351195-14351275 1.4e-05 3_[+1]_69 chrX:15276940-15277020 1.4e-05 22_[+1]_50 chrIII:7723680-7723760 1.4e-05 38_[+1]_34 chrI:882909-882989 1.4e-05 71_[+1]_1 chrIV:1824187-1824267 1.4e-05 [+1]_72 chrIV:7402244-7402324 1.4e-05 64_[+1]_8 chrI:14346684-14346764 1.4e-05 54_[+1]_18 chrIV:6646129-6646209 3.2e-05 52_[+1]_20 chrX:7651641-7651721 3.2e-05 36_[+1]_36 chrV:5200374-5200454 3.2e-05 20_[+1]_52 chrII:1672517-1672597 3.2e-05 7_[+1]_65 chrIII:6317476-6317556 3.2e-05 57_[+1]_15 chrIV:8181600-8181680 3.2e-05 47_[+1]_25 chrX:949587-949667 4.3e-05 66_[+1]_6 chrI:4932860-4932940 5.5e-05 40_[+1]_32 chrI:9430641-9430721 5.5e-05 51_[+1]_21 chrX:14016829-14016909 8.6e-05 25_[+1]_47 chrIII:6344930-6345010 8.6e-05 30_[+1]_42 chrI:5313301-5313381 8.6e-05 36_[+1]_36 chrI:14738736-14738816 8.6e-05 6_[+1]_66 chrIV:2599787-2599867 0.0001 47_[+1]_25 chrII:6491912-6491992 0.00012 6_[+1]_66 chrX:5812231-5812311 0.00013 52_[+1]_20 chrII:11091706-11091786 0.00015 56_[+1]_16 chrV:7231016-7231096 0.00016 55_[+1]_17 chrI:9077404-9077484 0.00021 19_[+1]_53 chrV:17858029-17858109 0.00021 12_[+1]_60 chrIV:10403479-10403559 0.00021 28_[+1]_44 chrIII:10284316-10284396 0.00021 20_[+1]_52 chrI:8133795-8133875 0.00022 17_[+1]_55 chrI:6579927-6580007 0.00022 2_[+1]_70 chrIV:2053560-2053640 0.00024 3_[+1]_69 chrII:9060464-9060544 0.00025 [+1]_72 chrX:16365290-16365370 0.00026 10_[+1]_62 chrV:7111433-7111513 0.00028 42_[+1]_30 chrX:3191524-3191604 0.00033 34_[+1]_38 chrIV:14371756-14371836 0.00033 48_[+1]_24 chrV:12318313-12318393 0.00036 9_[+1]_63 chrI:9788740-9788820 0.00038 43_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTYT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTCTYT width=8 seqs=40 chrX:2852669-2852749 ( 32) CTCTCTCT 1 chrV:14351195-14351275 ( 4) CTCTCTCT 1 chrX:15276940-15277020 ( 23) CTCTCTCT 1 chrIII:7723680-7723760 ( 39) CTCTCTCT 1 chrI:882909-882989 ( 72) CTCTCTCT 1 chrIV:1824187-1824267 ( 1) CTCTCTCT 1 chrIV:7402244-7402324 ( 65) CTCTCTCT 1 chrI:14346684-14346764 ( 55) CTCTCTCT 1 chrIV:6646129-6646209 ( 53) CTCTCTTT 1 chrX:7651641-7651721 ( 37) CTCTCTTT 1 chrV:5200374-5200454 ( 21) CTCTCTTT 1 chrII:1672517-1672597 ( 8) CTCTCTTT 1 chrIII:6317476-6317556 ( 58) CTCTCTTT 1 chrIV:8181600-8181680 ( 48) CTCTCTTT 1 chrX:949587-949667 ( 67) CTCTCTCC 1 chrI:4932860-4932940 ( 41) CTCTCGCT 1 chrI:9430641-9430721 ( 52) CTCTCGCT 1 chrX:14016829-14016909 ( 26) CTCTCTTC 1 chrIII:6344930-6345010 ( 31) CTCTCTTC 1 chrI:5313301-5313381 ( 37) CTCTTTCT 1 chrI:14738736-14738816 ( 7) CTCTTTCT 1 chrIV:2599787-2599867 ( 48) GTCTCTCT 1 chrII:6491912-6491992 ( 7) CTCTCGTT 1 chrX:5812231-5812311 ( 53) CTCTCTCG 1 chrII:11091706-11091786 ( 57) CTCTTTTT 1 chrV:7231016-7231096 ( 56) CTCTCTCA 1 chrI:9077404-9077484 ( 20) GTCTCTTT 1 chrV:17858029-17858109 ( 13) CTCTGTCT 1 chrIV:10403479-10403559 ( 29) CTCTGTCT 1 chrIII:10284316-10284396 ( 21) GTCTCTTT 1 chrI:8133795-8133875 ( 18) CTCTATCT 1 chrI:6579927-6580007 ( 3) CTCTATCT 1 chrIV:2053560-2053640 ( 4) CTCTTTCC 1 chrII:9060464-9060544 ( 1) CTCTCTTG 1 chrX:16365290-16365370 ( 11) GTCTCTCC 1 chrV:7111433-7111513 ( 43) CTCTCTTA 1 chrX:3191524-3191604 ( 35) CTCTCGTC 1 chrIV:14371756-14371836 ( 49) CTCTTGCT 1 chrV:12318313-12318393 ( 10) GTCTCGCT 1 chrI:9788740-9788820 ( 44) CTCTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTYT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3065 E= 8.2e-001 -1197 198 -88 -1197 -1197 -1197 -1197 185 -1197 218 -1197 -1197 -1197 -1197 -1197 185 -244 176 -220 -89 -1197 -1197 -62 161 -1197 144 -1197 53 -244 -34 -220 139 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTYT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 8.2e-001 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.050000 0.750000 0.050000 0.150000 0.000000 0.000000 0.150000 0.850000 0.000000 0.600000 0.000000 0.400000 0.050000 0.175000 0.050000 0.725000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTYT MEME-1 regular expression -------------------------------------------------------------------------------- CTCTCT[CT]T -------------------------------------------------------------------------------- Time 10.56 secs. ******************************************************************************** ******************************************************************************** MOTIF SCGCGCGC MEME-2 width = 8 sites = 27 llr = 235 E-value = 7.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCGCGCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C 49:7:a:7 probability G 61939:a3 matrix T ::1::::: bits 2.2 ** 2.0 ** 1.7 * ** 1.5 ** *** Relative 1.3 ******* Entropy 1.1 ******* (12.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGCGC consensus C G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCGCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:13068435-13068515 71 6.79e-06 CATCGTGGGT GCGCGCGC CG chrV:4731570-4731650 30 6.79e-06 TTGCAAAAAC GCGCGCGC GCATTGCATG chrII:7327260-7327340 43 6.79e-06 GACGAGGAGG GCGCGCGC AGAAATGTGA chrV:1150454-1150534 63 6.79e-06 ATTTTTTTTT GCGCGCGC GGAAAGCTCC chrI:14734859-14734939 47 6.79e-06 AATCTCAGGT GCGCGCGC GAAAATTTAT chrV:8631560-8631640 10 1.33e-05 TTGCAACCA CCGCGCGC GTTTTTGCAA chrIII:3664378-3664458 43 1.33e-05 TTGCAACACG CCGCGCGC ATTTCGCAAC chrV:9731085-9731165 40 2.75e-05 TCGGCGCGGC GCGGGCGC ACGCTAAATA chrIII:10461279-10461359 18 2.75e-05 TGTGTAAAAT GCGCGCGG CACACTTGCG chrIII:4171137-4171217 27 2.75e-05 AATGTCATCT GCGCGCGG CATATCTGCA chrX:4315073-4315153 47 4.11e-05 ATCGGTGAAT CCGCGCGG CGGGGCCCTG chrII:5105228-5105308 40 4.90e-05 TTCGTAGAGC GCGCACGC TAACCACTCG chrV:6227991-6228071 27 4.90e-05 TATAGATTCT GCGCACGC TTCTCTGACT chrIII:2786012-2786092 65 5.72e-05 GGAGTGTGTG GCTCGCGC AGCGTCTT chrV:12026975-12027055 14 5.72e-05 AGCAAAAGCA GCTCGCGC AAACATACAC chrX:15276940-15277020 66 6.43e-05 TTATAGACAA GGGCGCGC ACCCGCC chrIII:13526896-13526976 72 7.17e-05 CTACTTAGTT GCGGGCGG G chrI:12736838-12736918 69 7.93e-05 CGGGTGCCCC CCGCACGC CTCT chrX:16366674-16366754 42 8.71e-05 TCGTGTGCTG CCTCGCGC GATGGCGGAT chrV:14351195-14351275 28 9.39e-05 tctctgctct cggcgcgc tgtctctcgc chrI:882909-882989 43 9.39e-05 GCCGACCGGC CGGCGCGC CTTCTCCCAT chrX:16361144-16361224 14 1.01e-04 ATGGATACGC CCGGGCGG CCCCAGGGGC chrII:3999662-3999742 65 1.01e-04 CCTTTTACTC CCGGGCGG TCCCTCTC chrIV:15017117-15017197 36 1.01e-04 CTCCGCCGTC CCGGGCGG ACTTCGCCTT chrI:8259528-8259608 34 1.09e-04 CCACTAGACC ACGCGCGC ATAGCATTGG chrX:3875873-3875953 67 1.26e-04 TCGCAAGGAT GCGGACGC ACTCAA chrX:16796958-16797038 39 1.43e-04 GACGCAGACG GCTGGCGC CCCGCGTGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCGCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:13068435-13068515 6.8e-06 70_[+2]_2 chrV:4731570-4731650 6.8e-06 29_[+2]_43 chrII:7327260-7327340 6.8e-06 42_[+2]_30 chrV:1150454-1150534 6.8e-06 62_[+2]_10 chrI:14734859-14734939 6.8e-06 46_[+2]_26 chrV:8631560-8631640 1.3e-05 9_[+2]_63 chrIII:3664378-3664458 1.3e-05 42_[+2]_30 chrV:9731085-9731165 2.7e-05 39_[+2]_33 chrIII:10461279-10461359 2.7e-05 17_[+2]_55 chrIII:4171137-4171217 2.7e-05 26_[+2]_46 chrX:4315073-4315153 4.1e-05 46_[+2]_26 chrII:5105228-5105308 4.9e-05 39_[+2]_33 chrV:6227991-6228071 4.9e-05 26_[+2]_46 chrIII:2786012-2786092 5.7e-05 64_[+2]_8 chrV:12026975-12027055 5.7e-05 13_[+2]_59 chrX:15276940-15277020 6.4e-05 65_[+2]_7 chrIII:13526896-13526976 7.2e-05 71_[+2]_1 chrI:12736838-12736918 7.9e-05 68_[+2]_4 chrX:16366674-16366754 8.7e-05 41_[+2]_31 chrV:14351195-14351275 9.4e-05 27_[+2]_45 chrI:882909-882989 9.4e-05 42_[+2]_30 chrX:16361144-16361224 0.0001 13_[+2]_59 chrII:3999662-3999742 0.0001 64_[+2]_8 chrIV:15017117-15017197 0.0001 35_[+2]_37 chrI:8259528-8259608 0.00011 33_[+2]_39 chrX:3875873-3875953 0.00013 66_[+2]_6 chrX:16796958-16797038 0.00014 38_[+2]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCGCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCGCGCGC width=8 seqs=27 chrIII:13068435-13068515 ( 71) GCGCGCGC 1 chrV:4731570-4731650 ( 30) GCGCGCGC 1 chrII:7327260-7327340 ( 43) GCGCGCGC 1 chrV:1150454-1150534 ( 63) GCGCGCGC 1 chrI:14734859-14734939 ( 47) GCGCGCGC 1 chrV:8631560-8631640 ( 10) CCGCGCGC 1 chrIII:3664378-3664458 ( 43) CCGCGCGC 1 chrV:9731085-9731165 ( 40) GCGGGCGC 1 chrIII:10461279-10461359 ( 18) GCGCGCGG 1 chrIII:4171137-4171217 ( 27) GCGCGCGG 1 chrX:4315073-4315153 ( 47) CCGCGCGG 1 chrII:5105228-5105308 ( 40) GCGCACGC 1 chrV:6227991-6228071 ( 27) GCGCACGC 1 chrIII:2786012-2786092 ( 65) GCTCGCGC 1 chrV:12026975-12027055 ( 14) GCTCGCGC 1 chrX:15276940-15277020 ( 66) GGGCGCGC 1 chrIII:13526896-13526976 ( 72) GCGGGCGG 1 chrI:12736838-12736918 ( 69) CCGCACGC 1 chrX:16366674-16366754 ( 42) CCTCGCGC 1 chrV:14351195-14351275 ( 28) CGGCGCGC 1 chrI:882909-882989 ( 43) CGGCGCGC 1 chrX:16361144-16361224 ( 14) CCGGGCGG 1 chrII:3999662-3999742 ( 65) CCGGGCGG 1 chrIV:15017117-15017197 ( 36) CCGGGCGG 1 chrI:8259528-8259608 ( 34) ACGCGCGC 1 chrX:3875873-3875953 ( 67) GCGGACGC 1 chrX:16796958-16797038 ( 39) GCTGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCGCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.594 E= 7.8e-001 -287 74 136 -1140 -1140 201 -105 -1140 -1140 -1140 189 -90 -1140 174 17 -1140 -87 -1140 189 -1140 -1140 218 -1140 -1140 -1140 -1140 212 -1140 -1140 174 17 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCGCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 7.8e-001 0.037037 0.370370 0.592593 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.000000 0.851852 0.148148 0.000000 0.740741 0.259259 0.000000 0.148148 0.000000 0.851852 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.740741 0.259259 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCGCGC MEME-2 regular expression -------------------------------------------------------------------------------- [GC]CG[CG]GCG[CG] -------------------------------------------------------------------------------- Time 14.54 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTYCTYC MEME-3 width = 8 sites = 26 llr = 220 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTYCTYC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 2a:3a25a probability G 2::::::: matrix T 6:a7:85: bits 2.2 * * * 2.0 * * * 1.7 ** * * 1.5 ** * * Relative 1.3 ** ** * Entropy 1.1 ******* (12.2 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTCTTC consensus C C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCTYC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2852669-2852749 17 1.40e-05 TTTTTTCCCA TCTTCTCC CACCATCCTC chrIII:668334-668414 68 3.16e-05 TCCTGCTCCT TCTTCTTC CTCTA chrX:4265591-4265671 18 3.16e-05 CAGTTCGTCG TCTTCTTC TCAAGTAGTC chrI:4932860-4932940 27 3.16e-05 AAGGACGACT TCTTCTTC GTTCTCCTCT chrII:7676647-7676727 11 3.16e-05 ttctctcaca tcttcttc ctcttcGCCG chrIV:14371756-14371836 9 3.16e-05 ttatttct tcttcttc gtctactttt chrIV:8181600-8181680 12 3.16e-05 ttcatcttct tcttcttc gtcCCTAGTT chrI:14725363-14725443 41 3.16e-05 AAGAGTGTGC TCTTCTTC AGCTGCTCCA chrII:6491912-6491992 65 4.29e-05 GCATTGAGGC TCTCCTCC CCTCCTCA chrX:601394-601474 72 4.29e-05 ATCGCTCCCG TCTCCTCC T chrI:882909-882989 12 4.29e-05 CATCTCATCG TCTCCTCC TCTGTGTGGA chrX:952771-952851 69 5.69e-05 TTTCCCCCCG TCTCCTTC TACA chrX:7235056-7235136 38 6.81e-05 GCCCGTCCTT CCTTCTCC CCTTTCTTCC chrIII:13526896-13526976 2 6.81e-05 T CCTTCTCC CCCGGCCGGA chrIV:15017117-15017197 50 8.21e-05 GCGGACTTCG CCTTCTTC CTCAACCCAA chrI:9430641-9430721 42 1.09e-04 GTCTTCTTTA GCTTCTTC GTCTCTCGCT chrI:14755473-14755553 4 1.09e-04 GAC GCTTCTTC TGTTGTTTTC chrX:14115651-14115731 23 1.17e-04 AGGCAAACGA CCTCCTCC CACTTTCGTG chrI:9077404-9077484 73 1.40e-04 CATGCTTGTT TCTTCCCC chrX:9337927-9338007 34 1.40e-04 GCGCAAAACG TCTTCCCC TGCTGCGAAT chrII:3999662-3999742 34 1.40e-04 CAGTAGTCCG CCTCCTTC ATTAATAGTG chrX:1018724-1018804 4 1.63e-04 aga gCTCCTCC TCTTCTCTCG chrI:14720041-14720121 63 1.63e-04 ACAGTCAGCA GCTCCTCC AGCCATCGTG chrIII:13068435-13068515 54 1.84e-04 ACACTCATTT TCTCCCCC ATCGTGGGTG chrV:11674801-11674881 46 2.15e-04 TGGACCTCTT CCTTCCTC TATTCATCAT chrIV:3859725-3859805 11 2.36e-04 AAGCTCATCG GCTTCCTC GACCAGACTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCTYC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2852669-2852749 1.4e-05 16_[+3]_56 chrIII:668334-668414 3.2e-05 67_[+3]_5 chrX:4265591-4265671 3.2e-05 17_[+3]_55 chrI:4932860-4932940 3.2e-05 26_[+3]_46 chrII:7676647-7676727 3.2e-05 10_[+3]_62 chrIV:14371756-14371836 3.2e-05 8_[+3]_64 chrIV:8181600-8181680 3.2e-05 11_[+3]_61 chrI:14725363-14725443 3.2e-05 40_[+3]_32 chrII:6491912-6491992 4.3e-05 64_[+3]_8 chrX:601394-601474 4.3e-05 71_[+3]_1 chrI:882909-882989 4.3e-05 11_[+3]_61 chrX:952771-952851 5.7e-05 68_[+3]_4 chrX:7235056-7235136 6.8e-05 37_[+3]_35 chrIII:13526896-13526976 6.8e-05 1_[+3]_71 chrIV:15017117-15017197 8.2e-05 49_[+3]_23 chrI:9430641-9430721 0.00011 41_[+3]_31 chrI:14755473-14755553 0.00011 3_[+3]_69 chrX:14115651-14115731 0.00012 22_[+3]_50 chrI:9077404-9077484 0.00014 72_[+3] chrX:9337927-9338007 0.00014 33_[+3]_39 chrII:3999662-3999742 0.00014 33_[+3]_39 chrX:1018724-1018804 0.00016 3_[+3]_69 chrI:14720041-14720121 0.00016 62_[+3]_10 chrIII:13068435-13068515 0.00018 53_[+3]_19 chrV:11674801-11674881 0.00022 45_[+3]_27 chrIV:3859725-3859805 0.00024 10_[+3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCTYC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTYCTYC width=8 seqs=26 chrX:2852669-2852749 ( 17) TCTTCTCC 1 chrIII:668334-668414 ( 68) TCTTCTTC 1 chrX:4265591-4265671 ( 18) TCTTCTTC 1 chrI:4932860-4932940 ( 27) TCTTCTTC 1 chrII:7676647-7676727 ( 11) TCTTCTTC 1 chrIV:14371756-14371836 ( 9) TCTTCTTC 1 chrIV:8181600-8181680 ( 12) TCTTCTTC 1 chrI:14725363-14725443 ( 41) TCTTCTTC 1 chrII:6491912-6491992 ( 65) TCTCCTCC 1 chrX:601394-601474 ( 72) TCTCCTCC 1 chrI:882909-882989 ( 12) TCTCCTCC 1 chrX:952771-952851 ( 69) TCTCCTTC 1 chrX:7235056-7235136 ( 38) CCTTCTCC 1 chrIII:13526896-13526976 ( 2) CCTTCTCC 1 chrIV:15017117-15017197 ( 50) CCTTCTTC 1 chrI:9430641-9430721 ( 42) GCTTCTTC 1 chrI:14755473-14755553 ( 4) GCTTCTTC 1 chrX:14115651-14115731 ( 23) CCTCCTCC 1 chrI:9077404-9077484 ( 73) TCTTCCCC 1 chrX:9337927-9338007 ( 34) TCTTCCCC 1 chrII:3999662-3999742 ( 34) CCTCCTTC 1 chrX:1018724-1018804 ( 4) GCTCCTCC 1 chrI:14720041-14720121 ( 63) GCTCCTCC 1 chrIII:13068435-13068515 ( 54) TCTCCCCC 1 chrV:11674801-11674881 ( 46) CCTTCCTC 1 chrIV:3859725-3859805 ( 11) GCTTCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCTYC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0846 E= 1.2e+004 -1134 6 -26 106 -1134 218 -1134 -1134 -1134 -1134 -1134 185 -1134 65 -1134 124 -1134 218 -1134 -1134 -1134 -20 -1134 154 -1134 106 -1134 96 -1134 218 -1134 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCTYC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 1.2e+004 0.000000 0.230769 0.192308 0.576923 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.346154 0.000000 0.653846 0.000000 1.000000 0.000000 0.000000 0.000000 0.192308 0.000000 0.807692 0.000000 0.461538 0.000000 0.538462 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCTYC MEME-3 regular expression -------------------------------------------------------------------------------- [TC]CT[TC]CT[TC]C -------------------------------------------------------------------------------- Time 18.19 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCGGCC MEME-4 width = 8 sites = 2 llr = 24 E-value = 3.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCGGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aa::aa probability G :a::aa:: matrix T :::::::: bits 2.2 ******** 2.0 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCCGGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2727854-2727934 5 6.50e-06 CCAG CGCCGGCC AGAGTTGGTC chrIV:12771586-12771666 39 6.50e-06 ATGTCGTCGC CGCCGGCC TATTGATCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2727854-2727934 6.5e-06 4_[+4]_68 chrIV:12771586-12771666 6.5e-06 38_[+4]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCGGCC width=8 seqs=2 chrX:2727854-2727934 ( 5) CGCCGGCC 1 chrIV:12771586-12771666 ( 39) CGCCGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 3.5e+004 -765 217 -765 -765 -765 -765 211 -765 -765 217 -765 -765 -765 217 -765 -765 -765 -765 211 -765 -765 -765 211 -765 -765 217 -765 -765 -765 217 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.5e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGGCC MEME-4 regular expression -------------------------------------------------------------------------------- CGCCGGCC -------------------------------------------------------------------------------- Time 21.79 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCCACK MEME-5 width = 8 sites = 2 llr = 22 E-value = 2.1e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCCACK MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C aa:aa:a: probability G ::a::::5 matrix T :::::::5 bits 2.2 ***** * 2.0 ******* 1.7 ******* 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******** (15.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCACG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCACK MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:7027973-7028053 14 7.62e-06 AGCTGGAGAG CCGCCACG TCCATGATTC chrI:9788740-9788820 4 1.68e-05 cgc cCGCCACT GAGGCTCCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCACK MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:7027973-7028053 7.6e-06 13_[+5]_59 chrI:9788740-9788820 1.7e-05 3_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCACK MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCCACK width=8 seqs=2 chrIV:7027973-7028053 ( 14) CCGCCACG 1 chrI:9788740-9788820 ( 4) CCGCCACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCACK MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 2.1e+005 -765 217 -765 -765 -765 217 -765 -765 -765 -765 211 -765 -765 217 -765 -765 -765 217 -765 -765 188 -765 -765 -765 -765 217 -765 -765 -765 -765 111 85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCACK MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.1e+005 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCACK MEME-5 regular expression -------------------------------------------------------------------------------- CCGCCAC[GT] -------------------------------------------------------------------------------- Time 25.41 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:14721277-14721357 5.62e-02 80 chrI:14747454-14747534 1.00e+00 80 chrX:16369123-16369203 3.29e-01 80 chrI:14736617-14736697 2.28e-01 80 chrI:14745095-14745175 6.18e-01 80 chrI:14740120-14740200 9.38e-01 80 chrI:14727988-14728068 1.00e+00 80 chrI:14729006-14729086 5.98e-01 80 chrI:14726461-14726541 9.95e-01 80 chrI:14722458-14722538 4.31e-01 80 chrI:14754241-14754321 9.86e-01 80 chrI:14724088-14724168 9.95e-01 80 chrI:14755268-14755348 6.90e-01 80 chrI:14728597-14728677 1.10e-01 80 chrX:16369620-16369700 5.92e-01 80 chrX:16365290-16365370 9.10e-05 35_[+5(1.68e-05)]_37 chrI:14741534-14741614 9.24e-01 80 chrI:14746018-14746098 9.98e-01 80 chrX:16345453-16345533 8.36e-01 80 chrI:14733261-14733341 9.76e-01 80 chrI:14727313-14727393 7.85e-01 80 chrI:14730715-14730795 9.92e-01 80 chrI:14752574-14752654 1.00e+00 80 chrI:14724473-14724553 9.86e-01 80 chrI:14725363-14725443 3.38e-02 40_[+3(3.16e-05)]_32 chrX:16356961-16357041 9.63e-01 80 chrI:14720041-14720121 2.41e-02 80 chrI:14753537-14753617 9.99e-01 80 chrI:14749430-14749510 8.08e-01 80 chrIII:13526896-13526976 2.32e-04 1_[+3(6.81e-05)]_62_[+2(7.17e-05)]_\ 1 chrX:16379016-16379096 1.72e-01 80 chrIV:8181600-8181680 2.63e-03 5_[+3(3.16e-05)]_34_[+1(3.16e-05)]_\ 25 chrX:16346912-16346992 9.45e-01 80 chrX:16352657-16352737 3.78e-01 80 chrI:14734859-14734939 5.66e-02 46_[+2(6.79e-06)]_26 chrI:14730203-14730283 9.98e-01 80 chrI:14731678-14731758 2.43e-01 80 chrIII:6317476-6317556 7.45e-02 57_[+1(3.16e-05)]_15 chrX:16347528-16347608 9.71e-01 80 chrIV:7027973-7028053 1.18e-02 13_[+5(7.62e-06)]_59 chrM:3974-4054 9.99e-01 80 chrX:16366674-16366754 1.01e-02 41_[+2(8.71e-05)]_31 chrM:10436-10516 1.00e+00 80 chrIII:208974-209054 9.43e-01 80 chrI:14738970-14739050 9.10e-01 80 chrII:4133444-4133524 4.72e-02 80 chrI:14755473-14755553 1.74e-01 80 chrM:13141-13221 9.99e-01 80 chrM:2691-2771 1.00e+00 80 chrIV:3859725-3859805 1.50e-01 80 chrM:7765-7845 1.00e+00 80 chrM:9752-9832 1.00e+00 80 chrI:14725789-14725869 6.91e-01 80 chrX:16344444-16344524 9.28e-01 80 chrI:14741736-14741816 1.88e-01 80 chrM:300-380 9.83e-01 80 chrI:794363-794443 9.65e-01 80 chrM:8520-8600 8.48e-01 80 chrII:1672517-1672597 1.29e-02 7_[+1(3.16e-05)]_65 chrIII:13131423-13131503 9.84e-01 80 chrM:5547-5627 1.00e+00 80 chrX:16376183-16376263 1.13e-01 80 chrM:11488-11568 1.00e+00 80 chrX:16353724-16353804 9.42e-01 80 chrV:13024724-13024804 1.00e+00 80 chrI:14738736-14738816 2.57e-02 6_[+1(8.62e-05)]_66 chrX:16372981-16373061 9.72e-01 80 chrIV:9065448-9065528 9.96e-01 80 chrIV:6065335-6065415 4.43e-01 80 chrV:11953840-11953920 8.62e-03 80 chrX:14649408-14649488 6.07e-01 80 chrX:16346127-16346207 9.34e-01 80 chrI:14191145-14191225 5.17e-01 80 chrI:14749638-14749718 9.92e-01 80 chrM:1333-1413 1.00e+00 80 chrI:14742299-14742379 9.92e-01 80 chrM:2897-2977 1.00e+00 80 chrII:12090018-12090098 5.67e-01 80 chrV:5200374-5200454 1.77e-03 20_[+1(3.16e-05)]_52 chrX:8476492-8476572 1.65e-01 80 chrI:14736115-14736195 1.00e+00 80 chrIV:4586151-4586231 1.00e+00 80 chrIII:2914191-2914271 9.41e-01 80 chrI:14744299-14744379 9.79e-01 80 chrM:3667-3747 9.21e-01 80 chrV:1150454-1150534 1.54e-02 62_[+2(6.79e-06)]_10 chrV:6227991-6228071 3.13e-02 26_[+2(4.90e-05)]_46 chrIV:6366253-6366333 6.12e-01 80 chrX:10435780-10435860 3.09e-02 80 chrX:16363792-16363872 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chrX:14115651-14115731 4.06e-02 80 chrIV:7574008-7574088 3.27e-01 80 chrII:5105228-5105308 2.71e-02 39_[+2(4.90e-05)]_33 chrV:14351195-14351275 2.08e-04 3_[+1(1.40e-05)]_16_[+2(9.39e-05)]_\ 3_[+1(5.46e-05)]_34 chrX:2852669-2852749 5.72e-05 16_[+3(1.40e-05)]_7_[+1(1.40e-05)]_\ 41 chrII:6331560-6331640 2.85e-01 80 chrI:9788740-9788820 2.24e-04 3_[+5(1.68e-05)]_69 chrI:9688857-9688937 2.32e-02 80 chrIV:2599787-2599867 7.03e-03 80 chrX:13307025-13307105 6.52e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************