******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/fax-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:13487170-13487250 1.0000 80 chrIII:11093615-11093695 1.0000 80 chrIV:17108363-17108443 1.0000 80 chrI:2487859-2487939 1.0000 80 chrV:16553131-16553211 1.0000 80 chrII:8137430-8137510 1.0000 80 chrIV:13549460-13549540 1.0000 80 chrIV:1687266-1687346 1.0000 80 chrI:1280150-1280230 1.0000 80 chrIV:17099283-17099363 1.0000 80 chrIV:13023053-13023133 1.0000 80 chrIII:6013189-6013269 1.0000 80 chrIII:10811103-10811183 1.0000 80 chrV:4181846-4181926 1.0000 80 chrIII:10856998-10857078 1.0000 80 chrIII:10811320-10811400 1.0000 80 chrIII:13474600-13474680 1.0000 80 chrIV:4702220-4702300 1.0000 80 chrIV:10342176-10342256 1.0000 80 chrI:10469095-10469175 1.0000 80 chrM:5166-5246 1.0000 80 chrI:13422610-13422690 1.0000 80 chrI:13418735-13418815 1.0000 80 chrIV:385243-385323 1.0000 80 chrI:13421196-13421276 1.0000 80 chrIII:11848476-11848556 1.0000 80 chrI:2710654-2710734 1.0000 80 chrII:8137631-8137711 1.0000 80 chrV:11933409-11933489 1.0000 80 chrM:1737-1817 1.0000 80 chrII:6734837-6734917 1.0000 80 chrIV:13272632-13272712 1.0000 80 chrI:8125477-8125557 1.0000 80 chrIII:3476316-3476396 1.0000 80 chrI:853260-853340 1.0000 80 chrIV:10344812-10344892 1.0000 80 chrIV:10505103-10505183 1.0000 80 chrIII:3499980-3500060 1.0000 80 chrIV:10869082-10869162 1.0000 80 chrIII:8250438-8250518 1.0000 80 chrI:7251624-7251704 1.0000 80 chrIII:9808350-9808430 1.0000 80 chrII:5836521-5836601 1.0000 80 chrI:933476-933556 1.0000 80 chrIV:10723292-10723372 1.0000 80 chrM:8201-8281 1.0000 80 chrM:10191-10271 1.0000 80 chrX:16944188-16944268 1.0000 80 chrX:9296743-9296823 1.0000 80 chrIV:12771644-12771724 1.0000 80 chrIII:10123781-10123861 1.0000 80 chrII:6741564-6741644 1.0000 80 chrIV:10085812-10085892 1.0000 80 chrX:5056376-5056456 1.0000 80 chrIV:1981107-1981187 1.0000 80 chrI:3176570-3176650 1.0000 80 chrIII:12673572-12673652 1.0000 80 chrIII:10857840-10857920 1.0000 80 chrII:1134669-1134749 1.0000 80 chrII:1502106-1502186 1.0000 80 chrIII:7199000-7199080 1.0000 80 chrIII:3540628-3540708 1.0000 80 chrI:5659140-5659220 1.0000 80 chrI:15052839-15052919 1.0000 80 chrI:9064755-9064835 1.0000 80 chrIII:13187939-13188019 1.0000 80 chrX:3914447-3914527 1.0000 80 chrIII:8144740-8144820 1.0000 80 chrIII:2032857-2032937 1.0000 80 chrM:3523-3603 1.0000 80 chrI:4967551-4967631 1.0000 80 chrIII:11091831-11091911 1.0000 80 chrX:11384812-11384892 1.0000 80 chrII:7072745-7072825 1.0000 80 chrX:16944403-16944483 1.0000 80 chrI:7711660-7711740 1.0000 80 chrIV:13029873-13029953 1.0000 80 chrI:6252925-6253005 1.0000 80 chrIII:4905504-4905584 1.0000 80 chrIII:931565-931645 1.0000 80 chrV:16022759-16022839 1.0000 80 chrII:6383324-6383404 1.0000 80 chrI:14833884-14833964 1.0000 80 chrIV:13539964-13540044 1.0000 80 chrIII:6551566-6551646 1.0000 80 chrV:7084880-7084960 1.0000 80 chrI:12899164-12899244 1.0000 80 chrV:14443826-14443906 1.0000 80 chrII:6097618-6097698 1.0000 80 chrV:1197434-1197514 1.0000 80 chrI:10161954-10162034 1.0000 80 chrIV:13021427-13021507 1.0000 80 chrI:4958883-4958963 1.0000 80 chrIV:10503838-10503918 1.0000 80 chrIV:4712606-4712686 1.0000 80 chrIII:4947443-4947523 1.0000 80 chrI:3636581-3636661 1.0000 80 chrIII:13293123-13293203 1.0000 80 chrIV:5371030-5371110 1.0000 80 chrIV:1854050-1854130 1.0000 80 chrM:7253-7333 1.0000 80 chrII:12042360-12042440 1.0000 80 chrI:10026042-10026122 1.0000 80 chrII:4955546-4955626 1.0000 80 chrI:11090272-11090352 1.0000 80 chrIV:7654520-7654600 1.0000 80 chrIV:7230346-7230426 1.0000 80 chrIV:10500170-10500250 1.0000 80 chrIV:12621597-12621677 1.0000 80 chrI:15013996-15014076 1.0000 80 chrX:17315066-17315146 1.0000 80 chrII:1134868-1134948 1.0000 80 chrIV:12845823-12845903 1.0000 80 chrIV:10403339-10403419 1.0000 80 chrX:7569852-7569932 1.0000 80 chrIII:13423602-13423682 1.0000 80 chrM:6029-6109 1.0000 80 chrV:2127191-2127271 1.0000 80 chrIII:9465593-9465673 1.0000 80 chrIII:10016769-10016849 1.0000 80 chrIV:4586145-4586225 1.0000 80 chrV:2603160-2603240 1.0000 80 chrX:8156105-8156185 1.0000 80 chrI:6760282-6760362 1.0000 80 chrII:6898132-6898212 1.0000 80 chrM:1041-1121 1.0000 80 chrIV:13127979-13128059 1.0000 80 chrIV:11635793-11635873 1.0000 80 chrIV:8019947-8020027 1.0000 80 chrIII:3664395-3664475 1.0000 80 chrIV:11310779-11310859 1.0000 80 chrIV:13533121-13533201 1.0000 80 chrII:2991829-2991909 1.0000 80 chrI:9505913-9505993 1.0000 80 chrI:1034311-1034391 1.0000 80 chrV:18981151-18981231 1.0000 80 chrIII:640524-640604 1.0000 80 chrIV:2033185-2033265 1.0000 80 chrIV:10062900-10062980 1.0000 80 chrX:5591957-5592037 1.0000 80 chrI:3350083-3350163 1.0000 80 chrI:1675849-1675929 1.0000 80 chrX:5407384-5407464 1.0000 80 chrIII:1540263-1540343 1.0000 80 chrII:14528406-14528486 1.0000 80 chrV:10736912-10736992 1.0000 80 chrIV:4042406-4042486 1.0000 80 chrV:4193216-4193296 1.0000 80 chrI:14863589-14863669 1.0000 80 chrM:4602-4682 1.0000 80 chrII:5061950-5062030 1.0000 80 chrII:15008625-15008705 1.0000 80 chrI:1415964-1416044 1.0000 80 chrIV:9858290-9858370 1.0000 80 chrX:13675771-13675851 1.0000 80 chrIV:13028584-13028664 1.0000 80 chrM:9073-9153 1.0000 80 chrX:3994576-3994656 1.0000 80 chrII:10200931-10201011 1.0000 80 chrI:5164993-5165073 1.0000 80 chrII:2752699-2752779 1.0000 80 chrX:12407416-12407496 1.0000 80 chrIII:1824684-1824764 1.0000 80 chrI:27093-27173 1.0000 80 chrIII:5308419-5308499 1.0000 80 chrII:7537811-7537891 1.0000 80 chrII:4238070-4238150 1.0000 80 chrI:1175822-1175902 1.0000 80 chrI:2144108-2144188 1.0000 80 chrX:6134633-6134713 1.0000 80 chrI:6446645-6446725 1.0000 80 chrI:14606052-14606132 1.0000 80 chrI:10469296-10469376 1.0000 80 chrII:10527766-10527846 1.0000 80 chrIII:783445-783525 1.0000 80 chrV:7231000-7231080 1.0000 80 chrX:11257181-11257261 1.0000 80 chrI:7772618-7772698 1.0000 80 chrX:7798513-7798593 1.0000 80 chrM:10928-11008 1.0000 80 chrV:6880775-6880855 1.0000 80 chrIII:10436260-10436340 1.0000 80 chrII:15089557-15089637 1.0000 80 chrI:12899364-12899444 1.0000 80 chrV:9583087-9583167 1.0000 80 chrIII:4930435-4930515 1.0000 80 chrII:4791428-4791508 1.0000 80 chrII:6859073-6859153 1.0000 80 chrI:6493918-6493998 1.0000 80 chrIII:8650413-8650493 1.0000 80 chrIII:11286271-11286351 1.0000 80 chrIII:11142266-11142346 1.0000 80 chrV:15082459-15082539 1.0000 80 chrII:15232870-15232950 1.0000 80 chrX:1103886-1103966 1.0000 80 chrII:5399369-5399449 1.0000 80 chrV:155362-155442 1.0000 80 chrI:10642426-10642506 1.0000 80 chrII:9985050-9985130 1.0000 80 chrX:14016926-14017006 1.0000 80 chrIV:9316192-9316272 1.0000 80 chrIV:13094020-13094100 1.0000 80 chrI:4224901-4224981 1.0000 80 chrV:14423371-14423451 1.0000 80 chrII:8062362-8062442 1.0000 80 chrI:2996335-2996415 1.0000 80 chrII:13117276-13117356 1.0000 80 chrV:12024478-12024558 1.0000 80 chrX:8252344-8252424 1.0000 80 chrV:13715449-13715529 1.0000 80 chrII:3482348-3482428 1.0000 80 chrIV:410584-410664 1.0000 80 chrV:20832659-20832739 1.0000 80 chrI:12225485-12225565 1.0000 80 chrIV:13026284-13026364 1.0000 80 chrIV:796720-796800 1.0000 80 chrI:1719197-1719277 1.0000 80 chrV:14689530-14689610 1.0000 80 chrIV:5334718-5334798 1.0000 80 chrV:15136922-15137002 1.0000 80 chrIII:5853385-5853465 1.0000 80 chrI:1575728-1575808 1.0000 80 chrV:12510081-12510161 1.0000 80 chrI:1416164-1416244 1.0000 80 chrM:6230-6310 1.0000 80 chrIII:5102788-5102868 1.0000 80 chrIV:6631962-6632042 1.0000 80 chrIII:5871940-5872020 1.0000 80 chrI:1823179-1823259 1.0000 80 chrIV:7402216-7402296 1.0000 80 chrX:4616991-4617071 1.0000 80 chrX:6263434-6263514 1.0000 80 chrIII:7858710-7858790 1.0000 80 chrIII:3175138-3175218 1.0000 80 chrII:8325324-8325404 1.0000 80 chrIII:8850803-8850883 1.0000 80 chrV:10178229-10178309 1.0000 80 chrV:14524397-14524477 1.0000 80 chrII:5594423-5594503 1.0000 80 chrV:5917866-5917946 1.0000 80 chrII:7708729-7708809 1.0000 80 chrV:10356080-10356160 1.0000 80 chrIII:9104200-9104280 1.0000 80 chrV:3587818-3587898 1.0000 80 chrII:6061659-6061739 1.0000 80 chrII:4603213-4603293 1.0000 80 chrII:7857574-7857654 1.0000 80 chrII:14143999-14144079 1.0000 80 chrIII:7088072-7088152 1.0000 80 chrII:3502779-3502859 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_fax-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/fax-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.267 C 0.224 G 0.233 T 0.276 Background letter frequencies (from file dataset with add-one prior applied): A 0.267 C 0.224 G 0.233 T 0.275 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SCDCGGCC MEME-1 width = 8 sites = 47 llr = 381 E-value = 4.2e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCDCGGCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:2::::: pos.-specific C 5a173:aa probability G 3:4:7a:: matrix T 1:33:::: bits 2.2 * *** 1.9 * *** 1.7 * *** 1.5 * *** Relative 1.3 * ***** Entropy 1.1 * ***** (11.7 bits) 0.9 * ***** 0.6 * ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel CCGCGGCC consensus G TTC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCDCGGCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:3482348-3482428 29 7.13e-06 ATATCCGTGG CCGCGGCC TAAGAACCCC chrIII:11286271-11286351 4 7.13e-06 GCC CCGCGGCC ACGGCCCCCA chrIII:4930435-4930515 40 7.13e-06 GGTCAAATAG CCGCGGCC ACGGCCATGA chrIV:4042406-4042486 42 7.13e-06 TTTCTCGTGG CCGCGGCC TAGAAATCCC chrIII:1540263-1540343 24 7.13e-06 ATTCCCGTGG CCGCGGCC TAGAAATCCC chrIII:8144740-8144820 38 1.46e-05 AGTACACACA GCGCGGCC TGGTTTTCCA chrIII:7199000-7199080 38 1.46e-05 ATTCAAATGT GCGCGGCC ACGGCCACTG chrIV:4712606-4712686 15 2.30e-05 CGGAGAAAAT CCTCGGCC ACCCGGCCAC chrII:6097618-6097698 55 2.30e-05 CGAGGGCATT CCTCGGCC ATATTACGAT chrV:7084880-7084960 49 2.30e-05 TAGAAACCAA CCTCGGCC GCACTGCGCC chrIV:13127979-13128059 38 2.98e-05 CAAAGCTTCT CCGCCGCC ACTTTCTTGT chrV:2603160-2603240 51 4.68e-05 ACTTCCTCGT CCACGGCC ATGCGAAATG chrI:15013996-15014076 9 4.68e-05 TTTCGCGC GCTCGGCC AGAGGACGAG chrI:3176570-3176650 36 4.68e-05 GAAAGTTAGG CCACGGCC ACCACGGCCC chrV:12024478-12024558 34 5.39e-05 GAGGACGAGA GCGCCGCC AAAGTTAGAG chrIII:5871940-5872020 1 6.24e-05 . GCACGGCC GAGAAAAGTC chrI:5164993-5165073 41 7.93e-05 AACACAATGG CCGTGGCC TAAAAATCTC chrII:10200931-10201011 15 7.93e-05 TGGCCGATGG CCGTGGCC TAGGAAACAC chrV:10736912-10736992 18 7.93e-05 GAAACCTTTC CCGTGGCC GACATTATTC chrI:10161954-10162034 49 7.93e-05 TCGCTAGTGG CCGTGGCC GAACGCGCTG chrII:15232870-15232950 48 8.78e-05 ACGCGGGGGG ACGCGGCC TCTGGACACC chrII:15089557-15089637 59 8.78e-05 TTCCTAGGCC ACGCGGCC GTGTAGTCCT chrIII:7088072-7088152 45 1.04e-04 AATTTCTCGG CCACCGCC TGGGGACTCC chrII:10527766-10527846 39 1.04e-04 GCGACCGGTA CCACCGCC GCTGAGAAGA chrI:10469296-10469376 43 1.04e-04 GTGGGGCCTC GCTCCGCC ACCTCTGATA chrI:14606052-14606132 30 1.04e-04 GCACCCCCTG GCTCCGCC CATTTTTCTG chrII:4238070-4238150 53 1.04e-04 TTGCAACTTA GCTCCGCC CACCCTTTGA chrV:18981151-18981231 42 1.04e-04 GTTTCCTAGG CCACCGCC GGTGTACTCC chrI:13421196-13421276 36 1.04e-04 TTACAGCTAA GCTCCGCC TCTTTTCTCC chrI:13422610-13422690 21 1.04e-04 AATCCGTGAA GCTCCGCC CACTTTTTCC chrIII:783445-783525 55 1.13e-04 GATTCCGGCC GCGTGGCC TAGAAATCTC chrII:2752699-2752779 49 1.13e-04 GCGCGATTGC GCGTGGCC TAGCAGTGGA chrIII:3664395-3664475 3 1.13e-04 GG GCGTGGCC TTCGCTTGCA chrV:16022759-16022839 49 1.13e-04 GGTGGTGGCC GCGTGGCC GCGGACTAAG chrI:7251624-7251704 25 1.32e-04 TAGCAATAAA GCACCGCC CAATTTTCAG chrII:4791428-4791508 42 1.49e-04 CTAACATCCG ACTCGGCC GCCGGCCGTG chrIII:2032857-2032937 60 1.49e-04 GGGAATCGAA CCCCGGCC TTATGGGTGA chrIII:12673572-12673652 8 1.49e-04 GACCCCG ACTCGGCC AGGCAAGttt chrIII:5308419-5308499 34 1.86e-04 GGCCGGGAGG CCATGGCC GAGTTTTGAC chrII:4603213-4603293 35 2.12e-04 GAGAAAACCC TCGCGGCC GCAGTTGCCC chrII:6383324-6383404 2 2.41e-04 A CCTTCGCC AAGATGGCCT chrV:3587818-3587898 15 2.57e-04 CGATTTCGCA ACTCCGCC GCACAGTTTT chrIV:8019947-8020027 10 2.78e-04 GCTGAGATT TCTCGGCC ACAGTATCGC chrI:9505913-9505993 15 3.22e-04 CGGGGGATTG GCCCCGCC CACAGAACCG chrIV:12845823-12845903 42 3.63e-04 GGCCGAGCCC CCCTGGCC AATACCAATT chrI:6760282-6760362 34 4.23e-04 ACTAGTTTCC ACATGGCC GAGCTATCTC chrX:17315066-17315146 6 4.32e-04 CTCCT TCACCGCC GTTTTCTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCDCGGCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:3482348-3482428 7.1e-06 28_[+1]_44 chrIII:11286271-11286351 7.1e-06 3_[+1]_69 chrIII:4930435-4930515 7.1e-06 39_[+1]_33 chrIV:4042406-4042486 7.1e-06 41_[+1]_31 chrIII:1540263-1540343 7.1e-06 23_[+1]_49 chrIII:8144740-8144820 1.5e-05 37_[+1]_35 chrIII:7199000-7199080 1.5e-05 37_[+1]_35 chrIV:4712606-4712686 2.3e-05 14_[+1]_58 chrII:6097618-6097698 2.3e-05 54_[+1]_18 chrV:7084880-7084960 2.3e-05 48_[+1]_24 chrIV:13127979-13128059 3e-05 37_[+1]_35 chrV:2603160-2603240 4.7e-05 50_[+1]_22 chrI:15013996-15014076 4.7e-05 8_[+1]_64 chrI:3176570-3176650 4.7e-05 35_[+1]_37 chrV:12024478-12024558 5.4e-05 33_[+1]_39 chrIII:5871940-5872020 6.2e-05 [+1]_72 chrI:5164993-5165073 7.9e-05 40_[+1]_32 chrII:10200931-10201011 7.9e-05 14_[+1]_58 chrV:10736912-10736992 7.9e-05 17_[+1]_55 chrI:10161954-10162034 7.9e-05 48_[+1]_24 chrII:15232870-15232950 8.8e-05 47_[+1]_25 chrII:15089557-15089637 8.8e-05 58_[+1]_14 chrIII:7088072-7088152 0.0001 44_[+1]_28 chrII:10527766-10527846 0.0001 38_[+1]_34 chrI:10469296-10469376 0.0001 42_[+1]_30 chrI:14606052-14606132 0.0001 29_[+1]_43 chrII:4238070-4238150 0.0001 52_[+1]_20 chrV:18981151-18981231 0.0001 41_[+1]_31 chrI:13421196-13421276 0.0001 35_[+1]_37 chrI:13422610-13422690 0.0001 20_[+1]_52 chrIII:783445-783525 0.00011 54_[+1]_18 chrII:2752699-2752779 0.00011 48_[+1]_24 chrIII:3664395-3664475 0.00011 2_[+1]_70 chrV:16022759-16022839 0.00011 48_[+1]_24 chrI:7251624-7251704 0.00013 24_[+1]_48 chrII:4791428-4791508 0.00015 41_[+1]_31 chrIII:2032857-2032937 0.00015 59_[+1]_13 chrIII:12673572-12673652 0.00015 7_[+1]_65 chrIII:5308419-5308499 0.00019 33_[+1]_39 chrII:4603213-4603293 0.00021 34_[+1]_38 chrII:6383324-6383404 0.00024 1_[+1]_71 chrV:3587818-3587898 0.00026 14_[+1]_58 chrIV:8019947-8020027 0.00028 9_[+1]_63 chrI:9505913-9505993 0.00032 14_[+1]_58 chrIV:12845823-12845903 0.00036 41_[+1]_31 chrI:6760282-6760362 0.00042 33_[+1]_39 chrX:17315066-17315146 0.00043 5_[+1]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCDCGGCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCDCGGCC width=8 seqs=47 chrII:3482348-3482428 ( 29) CCGCGGCC 1 chrIII:11286271-11286351 ( 4) CCGCGGCC 1 chrIII:4930435-4930515 ( 40) CCGCGGCC 1 chrIV:4042406-4042486 ( 42) CCGCGGCC 1 chrIII:1540263-1540343 ( 24) CCGCGGCC 1 chrIII:8144740-8144820 ( 38) GCGCGGCC 1 chrIII:7199000-7199080 ( 38) GCGCGGCC 1 chrIV:4712606-4712686 ( 15) CCTCGGCC 1 chrII:6097618-6097698 ( 55) CCTCGGCC 1 chrV:7084880-7084960 ( 49) CCTCGGCC 1 chrIV:13127979-13128059 ( 38) CCGCCGCC 1 chrV:2603160-2603240 ( 51) CCACGGCC 1 chrI:15013996-15014076 ( 9) GCTCGGCC 1 chrI:3176570-3176650 ( 36) CCACGGCC 1 chrV:12024478-12024558 ( 34) GCGCCGCC 1 chrIII:5871940-5872020 ( 1) GCACGGCC 1 chrI:5164993-5165073 ( 41) CCGTGGCC 1 chrII:10200931-10201011 ( 15) CCGTGGCC 1 chrV:10736912-10736992 ( 18) CCGTGGCC 1 chrI:10161954-10162034 ( 49) CCGTGGCC 1 chrII:15232870-15232950 ( 48) ACGCGGCC 1 chrII:15089557-15089637 ( 59) ACGCGGCC 1 chrIII:7088072-7088152 ( 45) CCACCGCC 1 chrII:10527766-10527846 ( 39) CCACCGCC 1 chrI:10469296-10469376 ( 43) GCTCCGCC 1 chrI:14606052-14606132 ( 30) GCTCCGCC 1 chrII:4238070-4238150 ( 53) GCTCCGCC 1 chrV:18981151-18981231 ( 42) CCACCGCC 1 chrI:13421196-13421276 ( 36) GCTCCGCC 1 chrI:13422610-13422690 ( 21) GCTCCGCC 1 chrIII:783445-783525 ( 55) GCGTGGCC 1 chrII:2752699-2752779 ( 49) GCGTGGCC 1 chrIII:3664395-3664475 ( 3) GCGTGGCC 1 chrV:16022759-16022839 ( 49) GCGTGGCC 1 chrI:7251624-7251704 ( 25) GCACCGCC 1 chrII:4791428-4791508 ( 42) ACTCGGCC 1 chrIII:2032857-2032937 ( 60) CCCCGGCC 1 chrIII:12673572-12673652 ( 8) ACTCGGCC 1 chrIII:5308419-5308499 ( 34) CCATGGCC 1 chrII:4603213-4603293 ( 35) TCGCGGCC 1 chrII:6383324-6383404 ( 2) CCTTCGCC 1 chrV:3587818-3587898 ( 15) ACTCCGCC 1 chrIV:8019947-8020027 ( 10) TCTCGGCC 1 chrI:9505913-9505993 ( 15) GCCCCGCC 1 chrIV:12845823-12845903 ( 42) CCCTGGCC 1 chrI:6760282-6760362 ( 34) ACATGGCC 1 chrX:17315066-17315146 ( 6) TCACCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCDCGGCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6953 E= 4.2e-010 -107 106 55 -211 -1220 216 -1220 -1220 -33 -181 87 11 -1220 173 -1220 -11 -1220 51 155 -1220 -1220 -1220 210 -1220 -1220 216 -1220 -1220 -1220 216 -1220 -1220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCDCGGCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 4.2e-010 0.127660 0.468085 0.340426 0.063830 0.000000 1.000000 0.000000 0.000000 0.212766 0.063830 0.425532 0.297872 0.000000 0.744681 0.000000 0.255319 0.000000 0.319149 0.680851 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCDCGGCC MEME-1 regular expression -------------------------------------------------------------------------------- [CG]C[GTA][CT][GC]GCC -------------------------------------------------------------------------------- Time 9.47 secs. ******************************************************************************** ******************************************************************************** MOTIF RAAAAKDD MEME-2 width = 8 sites = 105 llr = 709 E-value = 6.0e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAAAAKDD MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4aaa9:43 pos.-specific C :::::::: probability G 6::::434 matrix T ::::1533 bits 2.2 1.9 *** 1.7 *** 1.5 *** Relative 1.3 **** Entropy 1.1 ***** (9.7 bits) 0.9 ****** 0.6 ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAAATAG consensus A GGA sequence TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAKDD MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:7857574-7857654 38 3.74e-05 GCGGAGTTGA GAAAAGAG ACTCAGTTTC chrI:1719197-1719277 72 3.74e-05 TTGTGAATAA GAAAATAG G chrIV:410584-410664 6 3.74e-05 AGACA GAAAAGAG ACACCACTCT chrIV:13021427-13021507 15 3.74e-05 GTTCTCTGCG GAAAAGAG CGTTGTTGCC chrI:14833884-14833964 16 3.74e-05 TATGCATCCG GAAAAGAG GAAGGCAACA chrIV:10342176-10342256 54 3.74e-05 AAAATGCGAT GAAAATAG CGGCAAGCTT chrIII:6013189-6013269 48 3.74e-05 TTTCTTCGAG GAAAATAG CGTTTGGCAC chrX:8252344-8252424 10 7.01e-05 AGGGGATGG GAAAAGGG GTGTGAAGAA chrIV:13094020-13094100 71 7.01e-05 AGTTAAAGAA GAAAAGGG CT chrI:12899364-12899444 33 7.01e-05 GGGGATCTGC GAAAAGGG GATCTGCAAA chrIII:10436260-10436340 27 7.01e-05 GGAGCAGAAC GAAAAGGG GATCTGCAAA chrI:4958883-4958963 37 7.01e-05 GGGGAGATAC GAAAAGGG GAGCAACGAA chrV:14443826-14443906 30 7.01e-05 GCGAGTTTTA GAAAAGGG GAGCTGGCAC chrI:12899164-12899244 39 7.01e-05 GGGGATCTGC GAAAAGGG GATCGGCAAA chrI:3176570-3176650 57 7.01e-05 ACGGCCCCAC GAAAATGG AATCTGCGTA chrIII:11848476-11848556 50 7.01e-05 CCCCACCACG GAAAAGGG ATCTGCGAGA chrIV:385243-385323 30 7.01e-05 GGGGAGATAC GAAAAGGG GAGCAACGAA chrV:4181846-4181926 32 7.01e-05 GAGGCCCCAC GAAAAGGG GATCTGCGAG chrIII:10811103-10811183 30 7.01e-05 GGGGAGATAC GAAAAGGG GAGATACGAA chrV:155362-155442 65 1.52e-04 GAAGAGAAAG AAAAAGAG ACCCCCCA chrII:2752699-2752779 22 1.52e-04 TTAATTCGTT GAAAAGTG TGCGGTGGGG chrI:3350083-3350163 61 1.52e-04 TTTCAAAGCT GAAAAGTG TATTTTGAAC chrIV:11310779-11310859 9 1.52e-04 AATAAGAG GAAAAGTG CGCGGCGGGC chrV:2603160-2603240 16 1.52e-04 ATTTGACCGA GAAAATTG TCCGCTTCGG chrII:4955546-4955626 4 1.52e-04 AGG GAAAAGTG GGCGGAGACT chrIV:5371030-5371110 18 1.52e-04 AAAACGAGCT GAAAATTG ATGAAAAAAC chrI:3636581-3636661 31 1.52e-04 AATTTAAAGA AAAAAGAG TTCGCGCGGT chrII:6741564-6741644 44 1.52e-04 CGGTGTCTGC GAAAATTG TTGCGAGGTC chrIV:796720-796800 25 2.32e-04 GCTTAGAAGT GAAAATAA AAGTATTTCC chrIII:8650413-8650493 55 2.32e-04 CCGGCTGGAG AAAAATGG GGGACTTTGA chrI:14606052-14606132 71 2.32e-04 CTTTTAGCGC AAAAATGG AA chrX:13675771-13675851 28 2.32e-04 GTCTTTTATG GAAAAGAA AGGTTGGAGT chrIV:10062900-10062980 9 2.32e-04 GAAAAAAA GAAAAGAA AATCGATGAG chrIII:640524-640604 5 2.32e-04 aaat gaaaataa attaTTTACT chrIV:10723292-10723372 50 2.32e-04 AAATTATTTG GAAAATAA TAATTTTACT chrIII:3476316-3476396 21 2.32e-04 TGATTCGCGA AAAAATGG GGCGGAGTTA chrIV:17099283-17099363 19 2.32e-04 CTCGGGGGGC AAAAATGG GCGTGGCTTC chrIV:17108363-17108443 1 2.32e-04 . AAAAAGGG GATCTATGAG chrIV:13487170-13487250 33 2.32e-04 CAAGATCTAC GAAAAGAA GATCTACGAA chrIII:7088072-7088152 6 2.76e-04 TGCCA GAAAATAT CGATCACCTC chrV:20832659-20832739 34 2.76e-04 AAACGAAACG GAAAATAT CAGCTAAAAA chrIV:4586145-4586225 35 2.76e-04 GCTAGGAAGG GAAAAGAT GTCCAAATTC chrIII:13474600-13474680 52 2.76e-04 CAGAAACGTG GAAAATAT CCTTTAGAAT chrII:9985050-9985130 4 3.58e-04 GAC GAAAAGGA GAGACTCACT chrX:12407416-12407496 69 3.58e-04 tgtgtgcgtT GAAAATGA AATT chrIV:10403339-10403419 4 3.58e-04 AAG GAAAAGGA GACCAATAAG chrI:11090272-11090352 14 3.58e-04 GAGAAAAGCC AAAAATTG GCCATCTTTT chrV:1197434-1197514 46 3.58e-04 GTTGCGTGAG AAAAATTG CGTTTTGTGC chrIV:13539964-13540044 16 3.58e-04 TAATAATTTT AAAAAGTG TTTAATTTAA chrX:16944403-16944483 12 3.58e-04 AACTTCGGAA AAAAATTG TAGAGAAATT chrII:6734837-6734917 63 3.58e-04 ATTGTTACAG AAAAATTG TGAGTTTTTT chrIII:11093615-11093695 58 3.58e-04 GATTCCTGGG GAAAATGA GATCTCACAG chrIII:5853385-5853465 60 3.96e-04 CGGGACATTC GAAAATGT CAATTCTCCG chrIV:1854050-1854130 35 3.96e-04 AAAAATCTGC GAAAAGGT GATCTGGCAC chrIV:10869082-10869162 27 3.96e-04 GTGTTAGGGG GAAAATGT GGGAGTCGgg chrIII:7858710-7858790 21 4.89e-04 TTAACATATG AAAAATAA TTGAATTATA chrM:10928-11008 39 4.89e-04 ttatttAAGA AAAAATAA ATATATTTAT chrI:1175822-1175902 4 4.89e-04 AAG AAAAATAA TAATCGAGAA chrII:14528406-14528486 20 4.89e-04 TATTCACGTT AAAAATAA TTAAACTTTT chrX:5407384-5407464 14 4.89e-04 CTGCAAATGA AAAAAGAA AAATAATTGC chrI:1675849-1675929 64 4.89e-04 TTTAGTCGGA AAAAATAA TATTTTTCA chrIV:2033185-2033265 49 4.89e-04 GCCACAGGTG GAAAAGTA CTCGTGGACA chrIV:13533121-13533201 36 4.89e-04 AAAAAATTTC GAAAATTA ATTTCAGTGT chrII:1134868-1134948 43 4.89e-04 AAAATTCGCT AAAAATAA AAATATGCAA chrV:7084880-7084960 15 4.89e-04 CATGCTCGAA AAAAATAA AACGCGCCGG chrI:7711660-7711740 15 4.89e-04 AAGTGGGAGG AAAAAGAA GAAAACATAG chrIII:3540628-3540708 46 4.89e-04 ATGGGTCTAT AAAAATAA CTATTCGTGA chrIII:7199000-7199080 69 4.89e-04 GCGGTAATTC AAAAATAA TATT chrIV:10344812-10344892 60 4.89e-04 agcaaaagag aaaaagaa aggagcaaag chrII:3502779-3502859 2 5.86e-04 T GAAAATTT GGAGTTTTTC chrII:3482348-3482428 15 5.86e-04 TTTAAATGTG AAAAATAT CCGTGGCCGC chrI:10161954-10162034 12 5.86e-04 TAAATATCAA AAAAATAT ATTCGAATTC chrI:9064755-9064835 69 5.86e-04 TCAAAATTTT AAAAAGAT TATA chrI:5659140-5659220 68 5.86e-04 CGGTGGTTCA AAAAATAT TATTT chrII:5836521-5836601 4 5.86e-04 TAA GAAAAGTT ACTGTGCTTT chrI:10469095-10469175 63 5.86e-04 TCTTCTAGAA GAAAATTT CAAAAATCAA chrIV:4702220-4702300 55 5.86e-04 TCTTCTAGAA GAAAATTT CAAAAATCAA chrIV:1687266-1687346 19 5.86e-04 GCCACGCCCA GAAAATTT GGGAGAAATG chrII:8137430-8137510 51 6.28e-04 TTCGCTGAAA AAAAATGA AGTTGTCTTA chrII:8062362-8062442 41 6.73e-04 TCTCTCCTGC AAAAATGT GGTGTCTCGG chrIV:7654520-7654600 19 6.73e-04 GTGAGATTTC AAAAAGGT TTTGTGTGCA chrIII:1540263-1540343 1 7.23e-04 . AAAAATTA TATAAATTCC chrIII:5871940-5872020 62 7.75e-04 TTTGCCGCAC AAAAATTT TCCTCCCTTT chrII:15089557-15089637 13 7.75e-04 AATTTCAAAG AAAAAGTT AAATATATTC chrIV:9858290-9858370 41 7.75e-04 CAAAATTCGA AAAAATTT GCACGCCAAA chrII:7072745-7072825 70 7.75e-04 TATTTAACTC AAAAAGTT ATT chrIII:2032857-2032937 30 7.75e-04 GAAGAATAAA AAAAATTT AATTCCGTTG chrIV:13549460-13549540 8 7.75e-04 tctgcca aaaaattt actctaatgt chrI:10642426-10642506 70 8.14e-04 AGCCACCAGC GAAATGAG AAC chrIV:8019947-8020027 60 8.14e-04 TCTCGCACGA GAAATTAG TACCCGCACA chrIV:7230346-7230426 15 8.14e-04 CACAAACAGA GAAATGAG CGCATCGATT chrII:8325324-8325404 3 9.31e-04 TT GAAATTTG CAATGCGCGC chrV:18981151-18981231 6 9.31e-04 CGCTC AAAATGAG CCTGGGGACT chrM:7253-7333 60 9.31e-04 AATGAGTAGT AAAATTAG AAGAGTTATG chrV:16022759-16022839 32 9.31e-04 AACTCGCGCC GAAATGTG GTGGTGGCCG chrII:10200931-10201011 39 1.01e-03 ACACAACAAT GAAATTAA CTTGTTTTAG chrM:1041-1121 43 1.06e-03 TGTTAATTAT GAAATTAT TATATTTTCT chrV:14423371-14423451 39 1.14e-03 AGCACGCTTG GAAATTGA GACACTACCG chrIII:10857840-10857920 44 1.14e-03 TTGGTTCTAC GAAATTGA TCATTCCGTG chrV:2127191-2127271 13 1.18e-03 GAATGGCCTA GAAATTGT GGCTGCAATG chrIII:11091831-11091911 52 1.18e-03 ACATTTCCCG GAAATGGT GAGGTCTCTA chrII:12042360-12042440 1 1.28e-03 . AAAATGAA AAATCAGGTT chrIV:1981107-1981187 13 1.28e-03 AAATTGCTTT AAAATGAA ACTGCGCGGC chrIV:13272632-13272712 51 1.65e-03 AAGAGACGCA GAAAAATG CATTGGGAGA chrII:8137631-8137711 54 1.65e-03 TCCTTCGAAC AAAAAAAG CAGCGCGTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAKDD MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:7857574-7857654 3.7e-05 37_[+2]_35 chrI:1719197-1719277 3.7e-05 71_[+2]_1 chrIV:410584-410664 3.7e-05 5_[+2]_67 chrIV:13021427-13021507 3.7e-05 14_[+2]_58 chrI:14833884-14833964 3.7e-05 15_[+2]_57 chrIV:10342176-10342256 3.7e-05 53_[+2]_19 chrIII:6013189-6013269 3.7e-05 47_[+2]_25 chrX:8252344-8252424 7e-05 9_[+2]_63 chrIV:13094020-13094100 7e-05 70_[+2]_2 chrI:12899364-12899444 7e-05 32_[+2]_40 chrIII:10436260-10436340 7e-05 26_[+2]_46 chrI:4958883-4958963 7e-05 36_[+2]_36 chrV:14443826-14443906 7e-05 29_[+2]_43 chrI:12899164-12899244 7e-05 38_[+2]_34 chrI:3176570-3176650 7e-05 56_[+2]_16 chrIII:11848476-11848556 7e-05 49_[+2]_23 chrIV:385243-385323 7e-05 29_[+2]_43 chrV:4181846-4181926 7e-05 31_[+2]_41 chrIII:10811103-10811183 7e-05 29_[+2]_43 chrV:155362-155442 0.00015 64_[+2]_8 chrII:2752699-2752779 0.00015 21_[+2]_51 chrI:3350083-3350163 0.00015 60_[+2]_12 chrIV:11310779-11310859 0.00015 8_[+2]_64 chrV:2603160-2603240 0.00015 15_[+2]_57 chrII:4955546-4955626 0.00015 3_[+2]_69 chrIV:5371030-5371110 0.00015 17_[+2]_55 chrI:3636581-3636661 0.00015 30_[+2]_42 chrII:6741564-6741644 0.00015 43_[+2]_29 chrIV:796720-796800 0.00023 24_[+2]_48 chrIII:8650413-8650493 0.00023 54_[+2]_18 chrI:14606052-14606132 0.00023 70_[+2]_2 chrX:13675771-13675851 0.00023 27_[+2]_45 chrIV:10062900-10062980 0.00023 8_[+2]_64 chrIII:640524-640604 0.00023 4_[+2]_68 chrIV:10723292-10723372 0.00023 49_[+2]_23 chrIII:3476316-3476396 0.00023 20_[+2]_52 chrIV:17099283-17099363 0.00023 18_[+2]_54 chrIV:17108363-17108443 0.00023 [+2]_72 chrIV:13487170-13487250 0.00023 32_[+2]_40 chrIII:7088072-7088152 0.00028 5_[+2]_67 chrV:20832659-20832739 0.00028 33_[+2]_39 chrIV:4586145-4586225 0.00028 34_[+2]_38 chrIII:13474600-13474680 0.00028 51_[+2]_21 chrII:9985050-9985130 0.00036 3_[+2]_69 chrX:12407416-12407496 0.00036 68_[+2]_4 chrIV:10403339-10403419 0.00036 3_[+2]_69 chrI:11090272-11090352 0.00036 13_[+2]_59 chrV:1197434-1197514 0.00036 45_[+2]_27 chrIV:13539964-13540044 0.00036 15_[+2]_57 chrX:16944403-16944483 0.00036 11_[+2]_61 chrII:6734837-6734917 0.00036 62_[+2]_10 chrIII:11093615-11093695 0.00036 57_[+2]_15 chrIII:5853385-5853465 0.0004 59_[+2]_13 chrIV:1854050-1854130 0.0004 34_[+2]_38 chrIV:10869082-10869162 0.0004 26_[+2]_46 chrIII:7858710-7858790 0.00049 20_[+2]_52 chrM:10928-11008 0.00049 38_[+2]_34 chrI:1175822-1175902 0.00049 3_[+2]_69 chrII:14528406-14528486 0.00049 19_[+2]_53 chrX:5407384-5407464 0.00049 13_[+2]_59 chrI:1675849-1675929 0.00049 63_[+2]_9 chrIV:2033185-2033265 0.00049 48_[+2]_24 chrIV:13533121-13533201 0.00049 35_[+2]_37 chrII:1134868-1134948 0.00049 42_[+2]_30 chrV:7084880-7084960 0.00049 14_[+2]_58 chrI:7711660-7711740 0.00049 14_[+2]_58 chrIII:3540628-3540708 0.00049 45_[+2]_27 chrIII:7199000-7199080 0.00049 68_[+2]_4 chrIV:10344812-10344892 0.00049 59_[+2]_13 chrII:3502779-3502859 0.00059 1_[+2]_71 chrII:3482348-3482428 0.00059 14_[+2]_58 chrI:10161954-10162034 0.00059 11_[+2]_61 chrI:9064755-9064835 0.00059 68_[+2]_4 chrI:5659140-5659220 0.00059 67_[+2]_5 chrII:5836521-5836601 0.00059 3_[+2]_69 chrI:10469095-10469175 0.00059 62_[+2]_10 chrIV:4702220-4702300 0.00059 54_[+2]_18 chrIV:1687266-1687346 0.00059 18_[+2]_54 chrII:8137430-8137510 0.00063 50_[+2]_22 chrII:8062362-8062442 0.00067 40_[+2]_32 chrIV:7654520-7654600 0.00067 18_[+2]_54 chrIII:1540263-1540343 0.00072 [+2]_72 chrIII:5871940-5872020 0.00078 61_[+2]_11 chrII:15089557-15089637 0.00078 12_[+2]_60 chrIV:9858290-9858370 0.00078 40_[+2]_32 chrII:7072745-7072825 0.00078 69_[+2]_3 chrIII:2032857-2032937 0.00078 29_[+2]_43 chrIV:13549460-13549540 0.00078 7_[+2]_65 chrI:10642426-10642506 0.00081 69_[+2]_3 chrIV:8019947-8020027 0.00081 59_[+2]_13 chrIV:7230346-7230426 0.00081 14_[+2]_58 chrII:8325324-8325404 0.00093 2_[+2]_70 chrV:18981151-18981231 0.00093 5_[+2]_67 chrM:7253-7333 0.00093 59_[+2]_13 chrV:16022759-16022839 0.00093 31_[+2]_41 chrII:10200931-10201011 0.001 38_[+2]_34 chrM:1041-1121 0.0011 42_[+2]_30 chrV:14423371-14423451 0.0011 38_[+2]_34 chrIII:10857840-10857920 0.0011 43_[+2]_29 chrV:2127191-2127271 0.0012 12_[+2]_60 chrIII:11091831-11091911 0.0012 51_[+2]_21 chrII:12042360-12042440 0.0013 [+2]_72 chrIV:1981107-1981187 0.0013 12_[+2]_60 chrIV:13272632-13272712 0.0017 50_[+2]_22 chrII:8137631-8137711 0.0017 53_[+2]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAKDD MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAAAAKDD width=8 seqs=105 chrII:7857574-7857654 ( 38) GAAAAGAG 1 chrI:1719197-1719277 ( 72) GAAAATAG 1 chrIV:410584-410664 ( 6) GAAAAGAG 1 chrIV:13021427-13021507 ( 15) GAAAAGAG 1 chrI:14833884-14833964 ( 16) GAAAAGAG 1 chrIV:10342176-10342256 ( 54) GAAAATAG 1 chrIII:6013189-6013269 ( 48) GAAAATAG 1 chrX:8252344-8252424 ( 10) GAAAAGGG 1 chrIV:13094020-13094100 ( 71) GAAAAGGG 1 chrI:12899364-12899444 ( 33) GAAAAGGG 1 chrIII:10436260-10436340 ( 27) GAAAAGGG 1 chrI:4958883-4958963 ( 37) GAAAAGGG 1 chrV:14443826-14443906 ( 30) GAAAAGGG 1 chrI:12899164-12899244 ( 39) GAAAAGGG 1 chrI:3176570-3176650 ( 57) GAAAATGG 1 chrIII:11848476-11848556 ( 50) GAAAAGGG 1 chrIV:385243-385323 ( 30) GAAAAGGG 1 chrV:4181846-4181926 ( 32) GAAAAGGG 1 chrIII:10811103-10811183 ( 30) GAAAAGGG 1 chrV:155362-155442 ( 65) AAAAAGAG 1 chrII:2752699-2752779 ( 22) GAAAAGTG 1 chrI:3350083-3350163 ( 61) GAAAAGTG 1 chrIV:11310779-11310859 ( 9) GAAAAGTG 1 chrV:2603160-2603240 ( 16) GAAAATTG 1 chrII:4955546-4955626 ( 4) GAAAAGTG 1 chrIV:5371030-5371110 ( 18) GAAAATTG 1 chrI:3636581-3636661 ( 31) AAAAAGAG 1 chrII:6741564-6741644 ( 44) GAAAATTG 1 chrIV:796720-796800 ( 25) GAAAATAA 1 chrIII:8650413-8650493 ( 55) AAAAATGG 1 chrI:14606052-14606132 ( 71) AAAAATGG 1 chrX:13675771-13675851 ( 28) GAAAAGAA 1 chrIV:10062900-10062980 ( 9) GAAAAGAA 1 chrIII:640524-640604 ( 5) GAAAATAA 1 chrIV:10723292-10723372 ( 50) GAAAATAA 1 chrIII:3476316-3476396 ( 21) AAAAATGG 1 chrIV:17099283-17099363 ( 19) AAAAATGG 1 chrIV:17108363-17108443 ( 1) AAAAAGGG 1 chrIV:13487170-13487250 ( 33) GAAAAGAA 1 chrIII:7088072-7088152 ( 6) GAAAATAT 1 chrV:20832659-20832739 ( 34) GAAAATAT 1 chrIV:4586145-4586225 ( 35) GAAAAGAT 1 chrIII:13474600-13474680 ( 52) GAAAATAT 1 chrII:9985050-9985130 ( 4) GAAAAGGA 1 chrX:12407416-12407496 ( 69) GAAAATGA 1 chrIV:10403339-10403419 ( 4) GAAAAGGA 1 chrI:11090272-11090352 ( 14) AAAAATTG 1 chrV:1197434-1197514 ( 46) AAAAATTG 1 chrIV:13539964-13540044 ( 16) AAAAAGTG 1 chrX:16944403-16944483 ( 12) AAAAATTG 1 chrII:6734837-6734917 ( 63) AAAAATTG 1 chrIII:11093615-11093695 ( 58) GAAAATGA 1 chrIII:5853385-5853465 ( 60) GAAAATGT 1 chrIV:1854050-1854130 ( 35) GAAAAGGT 1 chrIV:10869082-10869162 ( 27) GAAAATGT 1 chrIII:7858710-7858790 ( 21) AAAAATAA 1 chrM:10928-11008 ( 39) AAAAATAA 1 chrI:1175822-1175902 ( 4) AAAAATAA 1 chrII:14528406-14528486 ( 20) AAAAATAA 1 chrX:5407384-5407464 ( 14) AAAAAGAA 1 chrI:1675849-1675929 ( 64) AAAAATAA 1 chrIV:2033185-2033265 ( 49) GAAAAGTA 1 chrIV:13533121-13533201 ( 36) GAAAATTA 1 chrII:1134868-1134948 ( 43) AAAAATAA 1 chrV:7084880-7084960 ( 15) AAAAATAA 1 chrI:7711660-7711740 ( 15) AAAAAGAA 1 chrIII:3540628-3540708 ( 46) AAAAATAA 1 chrIII:7199000-7199080 ( 69) AAAAATAA 1 chrIV:10344812-10344892 ( 60) AAAAAGAA 1 chrII:3502779-3502859 ( 2) GAAAATTT 1 chrII:3482348-3482428 ( 15) AAAAATAT 1 chrI:10161954-10162034 ( 12) AAAAATAT 1 chrI:9064755-9064835 ( 69) AAAAAGAT 1 chrI:5659140-5659220 ( 68) AAAAATAT 1 chrII:5836521-5836601 ( 4) GAAAAGTT 1 chrI:10469095-10469175 ( 63) GAAAATTT 1 chrIV:4702220-4702300 ( 55) GAAAATTT 1 chrIV:1687266-1687346 ( 19) GAAAATTT 1 chrII:8137430-8137510 ( 51) AAAAATGA 1 chrII:8062362-8062442 ( 41) AAAAATGT 1 chrIV:7654520-7654600 ( 19) AAAAAGGT 1 chrIII:1540263-1540343 ( 1) AAAAATTA 1 chrIII:5871940-5872020 ( 62) AAAAATTT 1 chrII:15089557-15089637 ( 13) AAAAAGTT 1 chrIV:9858290-9858370 ( 41) AAAAATTT 1 chrII:7072745-7072825 ( 70) AAAAAGTT 1 chrIII:2032857-2032937 ( 30) AAAAATTT 1 chrIV:13549460-13549540 ( 8) AAAAATTT 1 chrI:10642426-10642506 ( 70) GAAATGAG 1 chrIV:8019947-8020027 ( 60) GAAATTAG 1 chrIV:7230346-7230426 ( 15) GAAATGAG 1 chrII:8325324-8325404 ( 3) GAAATTTG 1 chrV:18981151-18981231 ( 6) AAAATGAG 1 chrM:7253-7333 ( 60) AAAATTAG 1 chrV:16022759-16022839 ( 32) GAAATGTG 1 chrII:10200931-10201011 ( 39) GAAATTAA 1 chrM:1041-1121 ( 43) GAAATTAT 1 chrV:14423371-14423451 ( 39) GAAATTGA 1 chrIII:10857840-10857920 ( 44) GAAATTGA 1 chrV:2127191-2127271 ( 13) GAAATTGT 1 chrIII:11091831-11091911 ( 52) GAAATGGT 1 chrII:12042360-12042440 ( 1) AAAATGAA 1 chrIV:1981107-1981187 ( 13) AAAATGAA 1 chrIV:13272632-13272712 ( 51) GAAAAATG 1 chrII:8137631-8137711 ( 54) AAAAAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAKDD MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.60966 E= 6.0e-019 62 -1336 134 -1336 190 -1336 -1336 -1336 190 -1336 -1336 -1336 190 -1336 -1336 -1336 168 -1336 -1336 -95 -381 -1336 91 98 68 -1336 34 0 14 -1336 94 -10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAKDD MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 105 E= 6.0e-019 0.409524 0.000000 0.590476 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.000000 0.142857 0.019048 0.000000 0.438095 0.542857 0.428571 0.000000 0.295238 0.276190 0.295238 0.000000 0.447619 0.257143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAKDD MEME-2 regular expression -------------------------------------------------------------------------------- [GA]AAAA[TG][AGT][GAT] -------------------------------------------------------------------------------- Time 13.48 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGCKCY MEME-3 width = 8 sites = 46 llr = 364 E-value = 9.6e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGCKCY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2::::2:: pos.-specific C 5:a:a:83 probability G :a:a:521 matrix T 3::::3:5 bits 2.2 **** 1.9 **** 1.7 **** 1.5 **** Relative 1.3 **** * Entropy 1.1 **** * (11.4 bits) 0.9 **** * 0.6 ***** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCGCT consensus T T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCKCY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:6631962-6632042 26 8.76e-06 GATTTGAACA CGCGCGCT TTTTCTTCGG chrI:10642426-10642506 12 8.76e-06 TGATAAACAA CGCGCGCT ATGGAATATC chrIII:1824684-1824764 37 1.59e-05 CTTGCAAAAT CGCGCGCC GCAGGCTGCA chrIII:4947443-4947523 30 1.59e-05 TGTTTGCGCG CGCGCGCC TCGCCTCGTC chrIII:5853385-5853465 37 2.62e-05 TTTGTTAGGC CGCGCTCT CTTAGCGGGA chrIII:11142266-11142346 42 2.62e-05 AAATTGCAAG CGCGCTCT ACTGCAAGGA chrIV:4042406-4042486 24 2.62e-05 ATTTCAAACT CGCGCTCT TTTCTCGTGG chrIII:5871940-5872020 30 3.70e-05 AACACCTTTT TGCGCGCT AAATTTGAAT chrII:5061950-5062030 27 3.70e-05 CAAATGCAAA TGCGCGCT ACTGCTCCTG chrII:3502779-3502859 64 5.54e-05 GAGTTGCATC CGCGCTCC ATTGCGAAT chrII:8062362-8062442 71 5.54e-05 GTGCAGCAAA CGCGCTCC AC chrII:4791428-4791508 19 5.54e-05 TTTGAACAAC CGCGCACT GTGGCCTAAC chrV:7231000-7231080 37 5.54e-05 TCGCAACCCC CGCGCACT TTTTATGCAA chrX:5591957-5592037 28 5.54e-05 CTCTTCGAAT CGCGCACT CTTCCCGGAG chrII:6734837-6734917 45 5.54e-05 GAAAAGCAAA CGCGCTCC ATTGTTACAG chrII:8137631-8137711 39 5.54e-05 GAACACCAAA CGCGCTCC TTCGAACAAA chrI:6446645-6446725 3 6.59e-05 GG AGCGCGCT TGCAATAATT chrIII:1540263-1540343 58 6.59e-05 TTCTCACTGG AGCGCGCT TGCTCGCTCC chrIV:7230346-7230426 43 6.59e-05 TTAGCCGTAG AGCGCGCT TGCGTTTTCG chrI:2487859-2487939 29 6.59e-05 GGTGTCAGCA AGCGCGCT CCAATGATTA chrII:7857574-7857654 13 7.46e-05 GAAGTTCTGC TGCGCGCC CTCTTTAGCG chrI:5164993-5165073 2 7.46e-05 T TGCGCGCC GTGTTTGCAC chrI:3636581-3636661 41 9.19e-05 AAAAAGAGTT CGCGCGGT GTACGTGAGT chrV:4181846-4181926 72 9.19e-05 CACTGTACAA CGCGCGGT G chrI:1416164-1416244 45 1.08e-04 CCTCCTCTCA AGCGCGCC CCACCGCACT chrIV:13533121-13533201 58 1.08e-04 CAGTGTTCAG CGCGCGCG AAAATTTATA chrIV:13021427-13021507 39 1.08e-04 TGCCCCCTCT CGCGCGCG CATCTTTTCC chrII:3482348-3482428 67 1.28e-04 GTGGTGCAAG TGCGCTCT GTTGCG chrI:10026042-10026122 46 1.28e-04 CACGCGCAAC TGCGCTCT ACTGCCAATT chrIII:5102788-5102868 62 1.63e-04 CCAGTGCAAG TGCGCTCC ATGGCTCTAC chrII:1134868-1134948 62 1.63e-04 AATATGCAAG TGCGCTCC ACCGAACACA chrI:10161954-10162034 60 1.74e-04 CGTGGCCGAA CGCGCTGT CAAACTTAGT chrI:27093-27173 60 2.04e-04 TACTGCtgca agcgcact ctatcgcaaa chrIV:2033185-2033265 19 2.04e-04 GTGACGATAG AGCGCACT TGCAACTGAG chrIII:10123781-10123861 44 2.04e-04 TTGACCGTGG AGCGCACT TGCCTCGATT chrIII:4930435-4930515 67 2.26e-04 AGGTCATATT TGCGCGGT AATTCA chrI:14606052-14606132 46 2.26e-04 CCCATTTTTC TGCGCACC CATAGTTCTT chrIII:9104200-9104280 54 2.54e-04 AACAGCCGAA CGCGCTGC CTATTGCGCC chrII:8325324-8325404 16 2.83e-04 ATTTGCAATG CGCGCACG CAGTTTTGCA chrI:2996335-2996415 52 2.83e-04 TTCTCAATGG AGCGCGGT TGCGTTACTA chrV:9583087-9583167 21 2.83e-04 CTTTGCAAGC CGCGCACG CTATTTTGCA chrIII:11286271-11286351 30 3.01e-04 CACGCCTTTT TGCGCGGC AATTCAAATC chrIV:1981107-1981187 23 3.01e-04 AAAATGAAAC TGCGCGGC GGGCTTGCGT chrI:1034311-1034391 69 3.26e-04 AAATCTCCCT CGCGCGGG TTTC chrIII:3664395-3664475 27 3.48e-04 TGCAACACGC CGCGCGCA TTTCGCAACG chrI:4224901-4224981 8 4.79e-04 CATAATT CGCGCGTT GTCCACTTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCKCY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:6631962-6632042 8.8e-06 25_[+3]_47 chrI:10642426-10642506 8.8e-06 11_[+3]_61 chrIII:1824684-1824764 1.6e-05 36_[+3]_36 chrIII:4947443-4947523 1.6e-05 29_[+3]_43 chrIII:5853385-5853465 2.6e-05 36_[+3]_36 chrIII:11142266-11142346 2.6e-05 41_[+3]_31 chrIV:4042406-4042486 2.6e-05 23_[+3]_49 chrIII:5871940-5872020 3.7e-05 29_[+3]_43 chrII:5061950-5062030 3.7e-05 26_[+3]_46 chrII:3502779-3502859 5.5e-05 63_[+3]_9 chrII:8062362-8062442 5.5e-05 70_[+3]_2 chrII:4791428-4791508 5.5e-05 18_[+3]_54 chrV:7231000-7231080 5.5e-05 36_[+3]_36 chrX:5591957-5592037 5.5e-05 27_[+3]_45 chrII:6734837-6734917 5.5e-05 44_[+3]_28 chrII:8137631-8137711 5.5e-05 38_[+3]_34 chrI:6446645-6446725 6.6e-05 2_[+3]_70 chrIII:1540263-1540343 6.6e-05 57_[+3]_15 chrIV:7230346-7230426 6.6e-05 42_[+3]_30 chrI:2487859-2487939 6.6e-05 28_[+3]_44 chrII:7857574-7857654 7.5e-05 12_[+3]_60 chrI:5164993-5165073 7.5e-05 1_[+3]_71 chrI:3636581-3636661 9.2e-05 40_[+3]_32 chrV:4181846-4181926 9.2e-05 71_[+3]_1 chrI:1416164-1416244 0.00011 44_[+3]_28 chrIV:13533121-13533201 0.00011 57_[+3]_15 chrIV:13021427-13021507 0.00011 38_[+3]_34 chrII:3482348-3482428 0.00013 66_[+3]_6 chrI:10026042-10026122 0.00013 45_[+3]_27 chrIII:5102788-5102868 0.00016 61_[+3]_11 chrII:1134868-1134948 0.00016 61_[+3]_11 chrI:10161954-10162034 0.00017 59_[+3]_13 chrI:27093-27173 0.0002 59_[+3]_13 chrIV:2033185-2033265 0.0002 18_[+3]_54 chrIII:10123781-10123861 0.0002 43_[+3]_29 chrIII:4930435-4930515 0.00023 66_[+3]_6 chrI:14606052-14606132 0.00023 45_[+3]_27 chrIII:9104200-9104280 0.00025 53_[+3]_19 chrII:8325324-8325404 0.00028 15_[+3]_57 chrI:2996335-2996415 0.00028 51_[+3]_21 chrV:9583087-9583167 0.00028 20_[+3]_52 chrIII:11286271-11286351 0.0003 29_[+3]_43 chrIV:1981107-1981187 0.0003 22_[+3]_50 chrI:1034311-1034391 0.00033 68_[+3]_4 chrIII:3664395-3664475 0.00035 26_[+3]_46 chrI:4224901-4224981 0.00048 7_[+3]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCKCY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGCKCY width=8 seqs=46 chrIV:6631962-6632042 ( 26) CGCGCGCT 1 chrI:10642426-10642506 ( 12) CGCGCGCT 1 chrIII:1824684-1824764 ( 37) CGCGCGCC 1 chrIII:4947443-4947523 ( 30) CGCGCGCC 1 chrIII:5853385-5853465 ( 37) CGCGCTCT 1 chrIII:11142266-11142346 ( 42) CGCGCTCT 1 chrIV:4042406-4042486 ( 24) CGCGCTCT 1 chrIII:5871940-5872020 ( 30) TGCGCGCT 1 chrII:5061950-5062030 ( 27) TGCGCGCT 1 chrII:3502779-3502859 ( 64) CGCGCTCC 1 chrII:8062362-8062442 ( 71) CGCGCTCC 1 chrII:4791428-4791508 ( 19) CGCGCACT 1 chrV:7231000-7231080 ( 37) CGCGCACT 1 chrX:5591957-5592037 ( 28) CGCGCACT 1 chrII:6734837-6734917 ( 45) CGCGCTCC 1 chrII:8137631-8137711 ( 39) CGCGCTCC 1 chrI:6446645-6446725 ( 3) AGCGCGCT 1 chrIII:1540263-1540343 ( 58) AGCGCGCT 1 chrIV:7230346-7230426 ( 43) AGCGCGCT 1 chrI:2487859-2487939 ( 29) AGCGCGCT 1 chrII:7857574-7857654 ( 13) TGCGCGCC 1 chrI:5164993-5165073 ( 2) TGCGCGCC 1 chrI:3636581-3636661 ( 41) CGCGCGGT 1 chrV:4181846-4181926 ( 72) CGCGCGGT 1 chrI:1416164-1416244 ( 45) AGCGCGCC 1 chrIV:13533121-13533201 ( 58) CGCGCGCG 1 chrIV:13021427-13021507 ( 39) CGCGCGCG 1 chrII:3482348-3482428 ( 67) TGCGCTCT 1 chrI:10026042-10026122 ( 46) TGCGCTCT 1 chrIII:5102788-5102868 ( 62) TGCGCTCC 1 chrII:1134868-1134948 ( 62) TGCGCTCC 1 chrI:10161954-10162034 ( 60) CGCGCTGT 1 chrI:27093-27173 ( 60) AGCGCACT 1 chrIV:2033185-2033265 ( 19) AGCGCACT 1 chrIII:10123781-10123861 ( 44) AGCGCACT 1 chrIII:4930435-4930515 ( 67) TGCGCGGT 1 chrI:14606052-14606132 ( 46) TGCGCACC 1 chrIII:9104200-9104280 ( 54) CGCGCTGC 1 chrII:8325324-8325404 ( 16) CGCGCACG 1 chrI:2996335-2996415 ( 52) AGCGCGGT 1 chrV:9583087-9583167 ( 21) CGCGCACG 1 chrIII:11286271-11286351 ( 30) TGCGCGGC 1 chrIV:1981107-1981187 ( 23) TGCGCGGC 1 chrI:1034311-1034391 ( 69) CGCGCGGG 1 chrIII:3664395-3664475 ( 27) CGCGCGCA 1 chrI:4224901-4224981 ( 8) CGCGCGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCKCY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.69444 E= 9.6e-005 -45 128 -1217 -8 -1217 -1217 210 -1217 -1217 216 -1217 -1217 -1217 -1217 210 -1217 -1217 216 -1217 -1217 -45 -1217 116 4 -1217 180 -25 -366 -362 54 -110 98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCKCY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 9.6e-005 0.195652 0.543478 0.000000 0.260870 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.195652 0.000000 0.521739 0.282609 0.000000 0.782609 0.195652 0.021739 0.021739 0.326087 0.108696 0.543478 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCKCY MEME-3 regular expression -------------------------------------------------------------------------------- [CT]GCGC[GT]C[TC] -------------------------------------------------------------------------------- Time 17.05 secs. ******************************************************************************** ******************************************************************************** MOTIF CGTGSGGC MEME-4 width = 8 sites = 22 llr = 209 E-value = 4.4e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGTGSGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 8:::4::a probability G 1a1a6a9: matrix T 1:9:::1: bits 2.2 * * * * 1.9 * * * * 1.7 * * *** 1.5 * * *** Relative 1.3 *** *** Entropy 1.1 ******** (13.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGTGGGGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGSGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:2996335-2996415 16 9.48e-06 CTCCCCTTTT CGTGGGGC CTCAATAAAT chrI:10469296-10469376 32 9.48e-06 CTCCCCTTTT CGTGGGGC CTCGCTCCGC chrII:1134868-1134948 18 9.48e-06 CTCCCCTTTT CGTGGGGC CTCGAAAAAA chrIII:10123781-10123861 16 9.48e-06 CTCCCCTTTT CGTGGGGC CTCTGTTAAT chrIII:3499980-3500060 31 9.48e-06 TTCCCGCTTT CGTGGGGC CTCAAACCCG chrV:16553131-16553211 38 9.48e-06 ATCCCCTTTT CGTGGGGC CTCGTCAAAT chrIV:9316192-9316272 29 1.86e-05 TGAATAAAAC CGTGCGGC GGAATTGCGA chrI:1175822-1175902 33 1.86e-05 ACATAAACTC CGTGCGGC ACACTTGCAA chrII:4238070-4238150 32 1.86e-05 TGCGAAAATG CGTGCGGC GCGTTGCAAC chrIII:1824684-1824764 16 1.86e-05 AACTAAACCC CGTGCGGC GCTCTTGCAA chrIV:5371030-5371110 50 1.86e-05 AAAATAAAAC CGTGCGGC AACATTGCGA chrIV:1981107-1981187 38 1.86e-05 GGCGGGCTTG CGTGCGGC TCCCCGCCCA chrX:12407416-12407496 12 2.66e-05 CTCCTGCCCG CGGGGGGC CTCTTGCTCT chrV:4193216-4193296 61 2.66e-05 GGATTGCGGG CGGGGGGC ATTTATACTA chrIV:17099283-17099363 11 2.66e-05 CGTGGTGTCT CGGGGGGC AAAAATGGGC chrV:155362-155442 7 5.58e-05 CTTGGG GGTGGGGC TTGCCCCTTC chrII:2752699-2752779 33 5.58e-05 AAAAGTGTGC GGTGGGGC GCGATTGCGC chrIII:3175138-3175218 22 6.70e-05 CTCTTAACTC TGTGCGGC ACCATTGCGG chrI:14863589-14863669 28 6.70e-05 TGTAAAGCTG TGTGCGGC AGCGGCAGCG chrIII:13293123-13293203 70 6.70e-05 agtagggcaa tgtgcggc gcg chrIV:6631962-6632042 49 7.82e-05 TTCGGTCGGC CGTGGGTC GCGAATTGGA chrX:14016926-14017006 19 7.82e-05 CCCGGGGCGT CGTGGGTC CCGTCTTCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGSGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:2996335-2996415 9.5e-06 15_[+4]_57 chrI:10469296-10469376 9.5e-06 31_[+4]_41 chrII:1134868-1134948 9.5e-06 17_[+4]_55 chrIII:10123781-10123861 9.5e-06 15_[+4]_57 chrIII:3499980-3500060 9.5e-06 30_[+4]_42 chrV:16553131-16553211 9.5e-06 37_[+4]_35 chrIV:9316192-9316272 1.9e-05 28_[+4]_44 chrI:1175822-1175902 1.9e-05 32_[+4]_40 chrII:4238070-4238150 1.9e-05 31_[+4]_41 chrIII:1824684-1824764 1.9e-05 15_[+4]_57 chrIV:5371030-5371110 1.9e-05 49_[+4]_23 chrIV:1981107-1981187 1.9e-05 37_[+4]_35 chrX:12407416-12407496 2.7e-05 11_[+4]_61 chrV:4193216-4193296 2.7e-05 60_[+4]_12 chrIV:17099283-17099363 2.7e-05 10_[+4]_62 chrV:155362-155442 5.6e-05 6_[+4]_66 chrII:2752699-2752779 5.6e-05 32_[+4]_40 chrIII:3175138-3175218 6.7e-05 21_[+4]_51 chrI:14863589-14863669 6.7e-05 27_[+4]_45 chrIII:13293123-13293203 6.7e-05 69_[+4]_3 chrIV:6631962-6632042 7.8e-05 48_[+4]_24 chrX:14016926-14017006 7.8e-05 18_[+4]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGSGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGTGSGGC width=8 seqs=22 chrI:2996335-2996415 ( 16) CGTGGGGC 1 chrI:10469296-10469376 ( 32) CGTGGGGC 1 chrII:1134868-1134948 ( 18) CGTGGGGC 1 chrIII:10123781-10123861 ( 16) CGTGGGGC 1 chrIII:3499980-3500060 ( 31) CGTGGGGC 1 chrV:16553131-16553211 ( 38) CGTGGGGC 1 chrIV:9316192-9316272 ( 29) CGTGCGGC 1 chrI:1175822-1175902 ( 33) CGTGCGGC 1 chrII:4238070-4238150 ( 32) CGTGCGGC 1 chrIII:1824684-1824764 ( 16) CGTGCGGC 1 chrIV:5371030-5371110 ( 50) CGTGCGGC 1 chrIV:1981107-1981187 ( 38) CGTGCGGC 1 chrX:12407416-12407496 ( 12) CGGGGGGC 1 chrV:4193216-4193296 ( 61) CGGGGGGC 1 chrIV:17099283-17099363 ( 11) CGGGGGGC 1 chrV:155362-155442 ( 7) GGTGGGGC 1 chrII:2752699-2752779 ( 33) GGTGGGGC 1 chrIII:3175138-3175218 ( 22) TGTGCGGC 1 chrI:14863589-14863669 ( 28) TGTGCGGC 1 chrIII:13293123-13293203 ( 70) TGTGCGGC 1 chrIV:6631962-6632042 ( 49) CGTGGGTC 1 chrX:14016926-14017006 ( 19) CGTGGGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGSGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0499 E= 4.4e-004 -1110 179 -136 -101 -1110 -1110 210 -1110 -1110 -1110 -77 165 -1110 -1110 210 -1110 -1110 87 134 -1110 -1110 -1110 210 -1110 -1110 -1110 196 -160 -1110 216 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGSGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 4.4e-004 0.000000 0.772727 0.090909 0.136364 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.136364 0.863636 0.000000 0.000000 1.000000 0.000000 0.000000 0.409091 0.590909 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.909091 0.090909 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGSGGC MEME-4 regular expression -------------------------------------------------------------------------------- CGTG[GC]GGC -------------------------------------------------------------------------------- Time 20.44 secs. ******************************************************************************** ******************************************************************************** MOTIF CTAGGCCA MEME-5 width = 8 sites = 14 llr = 143 E-value = 1.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::9:::1a pos.-specific C a:1::99: probability G :::aa::: matrix T :a:::1:: bits 2.2 * ** 1.9 ** ** * 1.7 ** ** * 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (14.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTAGGCCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:3502779-3502859 45 1.20e-05 TTGGAGTTTT CTAGGCCA CGAGTTGCAT chrV:10356080-10356160 58 1.20e-05 GAGGGATATT CTAGGCCA TATGTAGCAA chrIII:8850803-8850883 53 1.20e-05 CGTGGAAATT CTAGGCCA CGGATAACTA chrII:13117276-13117356 39 1.20e-05 CCCCGAAATG CTAGGCCA CGCGTCGCGT chrII:2752699-2752779 70 1.20e-05 CAGTGGAAAC CTAGGCCA CTG chrIII:9465593-9465673 68 1.20e-05 TCAGCATTTT CTAGGCCA TTTCG chrI:15013996-15014076 39 1.20e-05 GGGTGGAATT CTAGGCCA CCAGATCATA chrIII:8144740-8144820 68 1.20e-05 GTTCTCAAAT CTAGGCCA TCTCA chrI:5659140-5659220 33 1.20e-05 TTGTCGGTTC CTAGGCCA CCACCTCGTT chrII:6061659-6061739 47 2.62e-05 GGGAAGTTTT CTAGGCAA CATGTGCAAT chrI:2710654-2710734 14 2.62e-05 TAGGCTTAAA CTAGGCAA ATCCTCCGCG chrIII:4930435-4930515 27 4.09e-05 GGTGACGTTT CTAGGTCA AATAGCCGCG chrIII:13187939-13188019 19 4.09e-05 TTGTCGGTTT CTAGGTCA CCACCCGTGT chrIV:4712606-4712686 38 5.09e-05 GCCACGAAAA CTCGGCCA TTTTGCATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:3502779-3502859 1.2e-05 44_[+5]_28 chrV:10356080-10356160 1.2e-05 57_[+5]_15 chrIII:8850803-8850883 1.2e-05 52_[+5]_20 chrII:13117276-13117356 1.2e-05 38_[+5]_34 chrII:2752699-2752779 1.2e-05 69_[+5]_3 chrIII:9465593-9465673 1.2e-05 67_[+5]_5 chrI:15013996-15014076 1.2e-05 38_[+5]_34 chrIII:8144740-8144820 1.2e-05 67_[+5]_5 chrI:5659140-5659220 1.2e-05 32_[+5]_40 chrII:6061659-6061739 2.6e-05 46_[+5]_26 chrI:2710654-2710734 2.6e-05 13_[+5]_59 chrIII:4930435-4930515 4.1e-05 26_[+5]_46 chrIII:13187939-13188019 4.1e-05 18_[+5]_54 chrIV:4712606-4712686 5.1e-05 37_[+5]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTAGGCCA width=8 seqs=14 chrII:3502779-3502859 ( 45) CTAGGCCA 1 chrV:10356080-10356160 ( 58) CTAGGCCA 1 chrIII:8850803-8850883 ( 53) CTAGGCCA 1 chrII:13117276-13117356 ( 39) CTAGGCCA 1 chrII:2752699-2752779 ( 70) CTAGGCCA 1 chrIII:9465593-9465673 ( 68) CTAGGCCA 1 chrI:15013996-15014076 ( 39) CTAGGCCA 1 chrIII:8144740-8144820 ( 68) CTAGGCCA 1 chrI:5659140-5659220 ( 33) CTAGGCCA 1 chrII:6061659-6061739 ( 47) CTAGGCAA 1 chrI:2710654-2710734 ( 14) CTAGGCAA 1 chrIII:4930435-4930515 ( 27) CTAGGTCA 1 chrIII:13187939-13188019 ( 19) CTAGGTCA 1 chrIV:4712606-4712686 ( 38) CTCGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 1.5e-001 -1045 216 -1045 -1045 -1045 -1045 -1045 186 180 -165 -1045 -1045 -1045 -1045 210 -1045 -1045 -1045 210 -1045 -1045 194 -1045 -95 -90 194 -1045 -1045 190 -1045 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.5e-001 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.928571 0.071429 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-5 regular expression -------------------------------------------------------------------------------- CTAGGCCA -------------------------------------------------------------------------------- Time 23.80 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:13487170-13487250 4.44e-01 80 chrIII:11093615-11093695 2.90e-01 80 chrIV:17108363-17108443 2.09e-01 80 chrI:2487859-2487939 8.66e-02 30_[+3(5.54e-05)]_42 chrV:16553131-16553211 1.56e-02 37_[+4(9.48e-06)]_35 chrII:8137430-8137510 6.32e-01 80 chrIV:13549460-13549540 5.60e-01 80 chrIV:1687266-1687346 1.63e-01 80 chrI:1280150-1280230 9.46e-01 80 chrIV:17099283-17099363 4.48e-03 10_[+4(2.66e-05)]_62 chrIV:13023053-13023133 5.16e-01 80 chrIII:6013189-6013269 5.52e-02 47_[+2(3.74e-05)]_25 chrIII:10811103-10811183 3.51e-01 14_[+2(7.01e-05)]_7_[+2(7.01e-05)]_\ 43 chrV:4181846-4181926 3.47e-03 31_[+2(7.01e-05)]_32_[+3(9.19e-05)]_\ 1 chrIII:10856998-10857078 9.51e-01 80 chrIII:10811320-10811400 9.98e-01 80 chrIII:13474600-13474680 3.13e-01 80 chrIV:4702220-4702300 1.42e-01 80 chrIV:10342176-10342256 1.87e-01 53_[+2(3.74e-05)]_19 chrI:10469095-10469175 3.49e-01 80 chrM:5166-5246 7.72e-01 80 chrI:13422610-13422690 6.52e-02 80 chrI:13418735-13418815 7.28e-01 80 chrIV:385243-385323 2.14e-03 29_[+2(7.01e-05)]_7_[+2(7.01e-05)]_\ 28 chrI:13421196-13421276 2.54e-01 80 chrIII:11848476-11848556 7.59e-02 49_[+2(7.01e-05)]_23 chrI:2710654-2710734 5.20e-02 13_[+5(2.62e-05)]_59 chrII:8137631-8137711 5.95e-02 38_[+3(5.54e-05)]_34 chrV:11933409-11933489 9.99e-01 80 chrM:1737-1817 9.78e-01 80 chrII:6734837-6734917 2.92e-02 44_[+3(5.54e-05)]_28 chrIV:13272632-13272712 2.32e-01 80 chrI:8125477-8125557 3.09e-01 80 chrIII:3476316-3476396 2.75e-01 80 chrI:853260-853340 3.13e-01 80 chrIV:10344812-10344892 3.30e-01 80 chrIV:10505103-10505183 9.30e-01 80 chrIII:3499980-3500060 2.16e-02 30_[+4(9.48e-06)]_42 chrIV:10869082-10869162 2.84e-01 80 chrIII:8250438-8250518 2.53e-01 80 chrI:7251624-7251704 1.08e-01 80 chrIII:9808350-9808430 9.54e-01 80 chrII:5836521-5836601 6.61e-01 80 chrI:933476-933556 9.09e-01 80 chrIV:10723292-10723372 5.06e-01 80 chrM:8201-8281 1.65e-01 80 chrM:10191-10271 7.64e-01 80 chrX:16944188-16944268 5.32e-01 80 chrX:9296743-9296823 3.99e-01 80 chrIV:12771644-12771724 5.10e-01 80 chrIII:10123781-10123861 5.59e-03 15_[+4(9.48e-06)]_57 chrII:6741564-6741644 7.03e-02 80 chrIV:10085812-10085892 4.53e-01 80 chrX:5056376-5056456 9.50e-01 80 chrIV:1981107-1981187 2.35e-04 37_[+4(1.86e-05)]_35 chrI:3176570-3176650 9.63e-04 35_[+1(4.68e-05)]_1_[+1(4.68e-05)]_\ 4_[+2(7.01e-05)]_16 chrIII:12673572-12673652 2.18e-02 8_[+5(5.09e-05)]_64 chrIII:10857840-10857920 2.29e-01 80 chrII:1134669-1134749 3.32e-01 80 chrII:1502106-1502186 1.76e-01 80 chrIII:7199000-7199080 3.21e-05 37_[+1(1.46e-05)]_35 chrIII:3540628-3540708 6.58e-01 80 chrI:5659140-5659220 8.85e-04 32_[+5(1.20e-05)]_40 chrI:15052839-15052919 9.02e-01 80 chrI:9064755-9064835 4.54e-01 80 chrIII:13187939-13188019 1.47e-01 18_[+5(4.09e-05)]_54 chrX:3914447-3914527 8.26e-01 80 chrIII:8144740-8144820 4.25e-05 37_[+1(1.46e-05)]_22_[+5(1.20e-05)]_\ 5 chrIII:2032857-2032937 4.53e-02 80 chrM:3523-3603 1.00e+00 80 chrI:4967551-4967631 4.55e-01 80 chrIII:11091831-11091911 5.64e-01 80 chrX:11384812-11384892 1.85e-01 80 chrII:7072745-7072825 7.52e-01 80 chrX:16944403-16944483 6.08e-01 80 chrI:7711660-7711740 5.08e-02 80 chrIV:13029873-13029953 5.54e-01 80 chrI:6252925-6253005 6.91e-01 80 chrIII:4905504-4905584 9.82e-01 80 chrIII:931565-931645 9.12e-01 80 chrV:16022759-16022839 8.25e-03 80 chrII:6383324-6383404 6.31e-02 80 chrI:14833884-14833964 1.06e-01 15_[+2(3.74e-05)]_57 chrIV:13539964-13540044 2.99e-01 80 chrIII:6551566-6551646 7.06e-01 80 chrV:7084880-7084960 9.64e-04 48_[+1(2.30e-05)]_24 chrI:12899164-12899244 9.13e-02 8_[+2(7.01e-05)]_22_[+2(7.01e-05)]_\ 34 chrV:14443826-14443906 7.76e-02 29_[+2(7.01e-05)]_43 chrII:6097618-6097698 2.66e-03 54_[+1(2.30e-05)]_18 chrV:1197434-1197514 1.75e-01 80 chrI:10161954-10162034 3.28e-03 48_[+1(7.93e-05)]_24 chrIV:13021427-13021507 7.92e-03 14_[+2(3.74e-05)]_58 chrI:4958883-4958963 8.44e-02 6_[+2(7.01e-05)]_7_[+2(7.01e-05)]_7_\ [+2(7.01e-05)]_7_[+2(7.01e-05)]_21 chrIV:10503838-10503918 3.50e-01 80 chrIV:4712606-4712686 4.15e-03 14_[+1(2.30e-05)]_15_[+5(5.09e-05)]_\ 35 chrIII:4947443-4947523 1.01e-02 29_[+3(1.59e-05)]_43 chrI:3636581-3636661 6.00e-03 40_[+3(9.19e-05)]_32 chrIII:13293123-13293203 3.80e-02 69_[+4(6.70e-05)]_3 chrIV:5371030-5371110 1.34e-03 49_[+4(1.86e-05)]_23 chrIV:1854050-1854130 1.61e-01 80 chrM:7253-7333 7.98e-01 80 chrII:12042360-12042440 2.89e-01 80 chrI:10026042-10026122 8.48e-02 80 chrII:4955546-4955626 5.61e-02 80 chrI:11090272-11090352 1.41e-01 80 chrIV:7654520-7654600 9.16e-02 80 chrIV:7230346-7230426 3.50e-02 42_[+3(6.59e-05)]_30 chrIV:10500170-10500250 1.02e-01 80 chrIV:12621597-12621677 7.59e-01 80 chrI:15013996-15014076 1.05e-06 3_[+3(8.76e-06)]_27_[+5(1.20e-05)]_\ 34 chrX:17315066-17315146 8.38e-02 80 chrII:1134868-1134948 1.15e-04 17_[+4(9.48e-06)]_55 chrIV:12845823-12845903 5.04e-02 80 chrIV:10403339-10403419 3.00e-01 80 chrX:7569852-7569932 7.50e-01 80 chrIII:13423602-13423682 4.34e-01 80 chrM:6029-6109 9.87e-01 80 chrV:2127191-2127271 1.10e-01 80 chrIII:9465593-9465673 3.99e-03 67_[+5(1.20e-05)]_5 chrIII:10016769-10016849 8.82e-01 80 chrIV:4586145-4586225 3.30e-01 80 chrV:2603160-2603240 2.36e-04 50_[+1(4.68e-05)]_22 chrX:8156105-8156185 9.09e-01 80 chrI:6760282-6760362 2.99e-01 80 chrII:6898132-6898212 9.40e-01 80 chrM:1041-1121 7.73e-01 80 chrIV:13127979-13128059 7.20e-02 37_[+1(2.98e-05)]_35 chrIV:11635793-11635873 8.03e-01 80 chrIV:8019947-8020027 1.25e-03 10_[+5(5.09e-05)]_62 chrIII:3664395-3664475 3.12e-02 80 chrIV:11310779-11310859 3.05e-04 80 chrIV:13533121-13533201 5.21e-02 80 chrII:2991829-2991909 5.70e-01 80 chrI:9505913-9505993 1.84e-01 80 chrI:1034311-1034391 9.80e-02 80 chrV:18981151-18981231 5.03e-04 36_[+5(1.20e-05)]_36 chrIII:640524-640604 4.09e-01 80 chrIV:2033185-2033265 6.18e-02 80 chrIV:10062900-10062980 7.53e-02 80 chrX:5591957-5592037 1.89e-02 27_[+3(5.54e-05)]_45 chrI:3350083-3350163 2.68e-01 80 chrI:1675849-1675929 3.86e-01 80 chrX:5407384-5407464 1.11e-01 80 chrIII:1540263-1540343 1.91e-04 23_[+1(7.13e-06)]_26_[+3(6.59e-05)]_\ 15 chrII:14528406-14528486 6.58e-01 80 chrV:10736912-10736992 1.72e-01 17_[+1(7.93e-05)]_55 chrIV:4042406-4042486 9.07e-04 23_[+3(2.62e-05)]_10_[+1(7.13e-06)]_\ 31 chrV:4193216-4193296 1.73e-02 60_[+4(2.66e-05)]_12 chrI:14863589-14863669 1.08e-01 27_[+4(6.70e-05)]_45 chrM:4602-4682 9.92e-01 80 chrII:5061950-5062030 3.53e-02 26_[+3(3.70e-05)]_46 chrII:15008625-15008705 6.70e-01 80 chrI:1415964-1416044 4.88e-01 80 chrIV:9858290-9858370 1.15e-01 80 chrX:13675771-13675851 1.25e-01 80 chrIV:13028584-13028664 9.40e-01 80 chrM:9073-9153 9.84e-01 80 chrX:3994576-3994656 3.42e-01 80 chrII:10200931-10201011 8.16e-03 14_[+1(7.93e-05)]_58 chrI:5164993-5165073 1.41e-03 1_[+3(7.46e-05)]_31_[+1(7.93e-05)]_\ 32 chrII:2752699-2752779 3.80e-07 32_[+4(5.58e-05)]_29_[+5(1.20e-05)]_\ 3 chrX:12407416-12407496 8.90e-03 11_[+4(2.66e-05)]_61 chrIII:1824684-1824764 1.57e-04 15_[+4(1.86e-05)]_13_[+3(1.59e-05)]_\ 36 chrI:27093-27173 2.06e-01 80 chrIII:5308419-5308499 3.19e-02 80 chrII:7537811-7537891 4.10e-01 80 chrII:4238070-4238150 5.61e-04 8_[+4(1.86e-05)]_15_[+4(1.86e-05)]_\ 41 chrI:1175822-1175902 4.26e-03 32_[+4(1.86e-05)]_40 chrI:2144108-2144188 8.30e-01 80 chrX:6134633-6134713 8.01e-01 80 chrI:6446645-6446725 1.43e-01 2_[+3(6.59e-05)]_70 chrI:14606052-14606132 3.28e-04 80 chrI:10469296-10469376 1.29e-04 31_[+4(9.48e-06)]_41 chrII:10527766-10527846 8.46e-02 80 chrIII:783445-783525 1.04e-02 80 chrV:7231000-7231080 4.88e-02 36_[+3(5.54e-05)]_36 chrX:11257181-11257261 5.07e-01 80 chrI:7772618-7772698 9.33e-01 80 chrX:7798513-7798593 2.82e-02 30_[+5(9.27e-05)]_42 chrM:10928-11008 6.72e-01 80 chrV:6880775-6880855 1.79e-01 80 chrIII:10436260-10436340 2.28e-01 9_[+2(7.01e-05)]_9_[+2(7.01e-05)]_\ 22_[+2(7.01e-05)]_7_[+2(7.01e-05)]_1 chrII:15089557-15089637 3.63e-05 51_[+5(1.20e-05)]_21 chrI:12899364-12899444 3.01e-01 2_[+2(7.01e-05)]_22_[+2(7.01e-05)]_\ 40 chrV:9583087-9583167 2.18e-01 80 chrIII:4930435-4930515 5.35e-05 26_[+5(4.09e-05)]_5_[+1(7.13e-06)]_\ 33 chrII:4791428-4791508 1.59e-03 18_[+3(5.54e-05)]_54 chrII:6859073-6859153 8.80e-01 80 chrI:6493918-6493998 4.29e-01 80 chrIII:8650413-8650493 2.76e-03 80 chrIII:11286271-11286351 2.55e-04 3_[+1(7.13e-06)]_69 chrIII:11142266-11142346 3.22e-02 41_[+3(2.62e-05)]_31 chrV:15082459-15082539 4.56e-02 80 chrII:15232870-15232950 3.09e-02 47_[+1(8.78e-05)]_25 chrX:1103886-1103966 5.63e-01 80 chrII:5399369-5399449 5.56e-02 80 chrV:155362-155442 9.66e-03 6_[+4(5.58e-05)]_66 chrI:10642426-10642506 8.66e-03 11_[+3(8.76e-06)]_61 chrII:9985050-9985130 2.45e-01 80 chrX:14016926-14017006 7.05e-02 18_[+4(7.82e-05)]_54 chrIV:9316192-9316272 2.90e-03 28_[+4(1.86e-05)]_44 chrIV:13094020-13094100 2.92e-02 70_[+2(7.01e-05)]_2 chrI:4224901-4224981 1.19e-01 80 chrV:14423371-14423451 2.67e-01 80 chrII:8062362-8062442 9.03e-03 70_[+3(5.54e-05)]_2 chrI:2996335-2996415 7.38e-03 15_[+4(9.48e-06)]_57 chrII:13117276-13117356 5.51e-03 38_[+5(1.20e-05)]_34 chrV:12024478-12024558 5.27e-02 33_[+1(5.39e-05)]_39 chrX:8252344-8252424 3.21e-01 9_[+2(7.01e-05)]_63 chrV:13715449-13715529 7.25e-01 80 chrII:3482348-3482428 1.12e-05 28_[+1(7.13e-06)]_44 chrIV:410584-410664 9.38e-02 5_[+2(3.74e-05)]_67 chrV:20832659-20832739 3.71e-01 80 chrI:12225485-12225565 7.44e-02 80 chrIV:13026284-13026364 9.93e-01 80 chrIV:796720-796800 2.94e-01 80 chrI:1719197-1719277 1.26e-01 71_[+2(3.74e-05)]_1 chrV:14689530-14689610 5.51e-01 80 chrIV:5334718-5334798 5.66e-01 80 chrV:15136922-15137002 9.36e-01 80 chrIII:5853385-5853465 2.04e-03 36_[+3(2.62e-05)]_36 chrI:1575728-1575808 5.56e-02 80 chrV:12510081-12510161 3.75e-01 29_[+5(6.84e-05)]_43 chrI:1416164-1416244 9.60e-02 80 chrM:6230-6310 9.96e-01 80 chrIII:5102788-5102868 3.05e-02 80 chrIV:6631962-6632042 4.17e-04 25_[+3(8.76e-06)]_15_[+4(7.82e-05)]_\ 24 chrIII:5871940-5872020 6.98e-04 [+1(6.24e-05)]_21_[+3(3.70e-05)]_43 chrI:1823179-1823259 6.54e-01 80 chrIV:7402216-7402296 5.52e-01 80 chrX:4616991-4617071 1.58e-01 80 chrX:6263434-6263514 4.66e-01 80 chrIII:7858710-7858790 3.36e-01 80 chrIII:3175138-3175218 1.54e-02 21_[+4(6.70e-05)]_51 chrII:8325324-8325404 1.96e-02 80 chrIII:8850803-8850883 3.55e-03 52_[+5(1.20e-05)]_20 chrV:10178229-10178309 8.00e-01 80 chrV:14524397-14524477 4.57e-01 80 chrII:5594423-5594503 9.88e-01 80 chrV:5917866-5917946 4.10e-01 80 chrII:7708729-7708809 3.35e-01 80 chrV:10356080-10356160 2.39e-02 57_[+5(1.20e-05)]_15 chrIII:9104200-9104280 4.65e-02 80 chrV:3587818-3587898 1.63e-01 80 chrII:6061659-6061739 3.89e-02 46_[+5(2.62e-05)]_26 chrII:4603213-4603293 9.68e-02 80 chrII:7857574-7857654 1.23e-03 12_[+3(7.46e-05)]_17_[+2(3.74e-05)]_\ 35 chrII:14143999-14144079 7.64e-01 80 chrIII:7088072-7088152 5.84e-04 39_[+5(5.09e-05)]_33 chrII:3502779-3502859 8.51e-05 44_[+5(1.20e-05)]_11_[+3(5.54e-05)]_\ 9 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************