******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/eyg-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:933477-933557 1.0000 80 chrII:66496-66576 1.0000 80 chrIII:3499985-3500065 1.0000 80 chrIV:9269117-9269197 1.0000 80 chrI:7711724-7711804 1.0000 80 chrII:11537323-11537403 1.0000 80 chrI:6153771-6153851 1.0000 80 chrIV:6646073-6646153 1.0000 80 chrI:11202506-11202586 1.0000 80 chrIII:13721286-13721366 1.0000 80 chrIII:4281077-4281157 1.0000 80 chrII:8716511-8716591 1.0000 80 chrIII:11481561-11481641 1.0000 80 chrI:6175186-6175266 1.0000 80 chrI:10585315-10585395 1.0000 80 chrIII:8873144-8873224 1.0000 80 chrX:5995784-5995864 1.0000 80 chrII:5836467-5836547 1.0000 80 chrV:10717111-10717191 1.0000 80 chrX:8156116-8156196 1.0000 80 chrIII:10094669-10094749 1.0000 80 chrX:4222870-4222950 1.0000 80 chrV:11844890-11844970 1.0000 80 chrIV:11524326-11524406 1.0000 80 chrX:3914477-3914557 1.0000 80 chrI:3873939-3874019 1.0000 80 chrV:975321-975401 1.0000 80 chrIII:535312-535392 1.0000 80 chrIV:14032728-14032808 1.0000 80 chrIV:3763557-3763637 1.0000 80 chrI:5659170-5659250 1.0000 80 chrV:7465666-7465746 1.0000 80 chrI:14808446-14808526 1.0000 80 chrX:5056372-5056452 1.0000 80 chrX:5818402-5818482 1.0000 80 chrIV:3227603-3227683 1.0000 80 chrIV:6646274-6646354 1.0000 80 chrIII:931568-931648 1.0000 80 chrI:3176575-3176655 1.0000 80 chrII:3567732-3567812 1.0000 80 chrI:9268972-9269052 1.0000 80 chrX:4616980-4617060 1.0000 80 chrI:14708099-14708179 1.0000 80 chrX:2802652-2802732 1.0000 80 chrX:5275456-5275536 1.0000 80 chrX:7232639-7232719 1.0000 80 chrX:8646490-8646570 1.0000 80 chrV:7230999-7231079 1.0000 80 chrII:7001609-7001689 1.0000 80 chrIV:3521197-3521277 1.0000 80 chrX:727787-727867 1.0000 80 chrX:15347832-15347912 1.0000 80 chrII:7708741-7708821 1.0000 80 chrIV:14872497-14872577 1.0000 80 chrIII:3476329-3476409 1.0000 80 chrX:14504357-14504437 1.0000 80 chrIII:8650438-8650518 1.0000 80 chrX:13144320-13144400 1.0000 80 chrX:3472442-3472522 1.0000 80 chrI:1823164-1823244 1.0000 80 chrI:11179355-11179435 1.0000 80 chrII:6913459-6913539 1.0000 80 chrII:11889565-11889645 1.0000 80 chrIV:11857407-11857487 1.0000 80 chrII:8325314-8325394 1.0000 80 chrIII:888124-888204 1.0000 80 chrV:1004032-1004112 1.0000 80 chrII:11393925-11394005 1.0000 80 chrIII:4947393-4947473 1.0000 80 chrII:6839003-6839083 1.0000 80 chrIII:5564922-5565002 1.0000 80 chrV:4181904-4181984 1.0000 80 chrX:14115616-14115696 1.0000 80 chrIV:16863655-16863735 1.0000 80 chrX:10555569-10555649 1.0000 80 chrIII:8356466-8356546 1.0000 80 chrIV:173165-173245 1.0000 80 chrIV:16415242-16415322 1.0000 80 chrIII:640556-640636 1.0000 80 chrII:12042299-12042379 1.0000 80 chrIII:598385-598465 1.0000 80 chrX:1302455-1302535 1.0000 80 chrIII:3664396-3664476 1.0000 80 chrV:2638653-2638733 1.0000 80 chrI:13421247-13421327 1.0000 80 chrIV:11310774-11310854 1.0000 80 chrII:4238060-4238140 1.0000 80 chrX:4972206-4972286 1.0000 80 chrI:14612804-14612884 1.0000 80 chrX:12171949-12172029 1.0000 80 chrI:1575717-1575797 1.0000 80 chrIII:647480-647560 1.0000 80 chrIII:4930425-4930505 1.0000 80 chrI:6532106-6532186 1.0000 80 chrIII:7199023-7199103 1.0000 80 chrII:4740157-4740237 1.0000 80 chrI:7712750-7712830 1.0000 80 chrIV:14496667-14496747 1.0000 80 chrI:1416032-1416112 1.0000 80 chrII:4672728-4672808 1.0000 80 chrX:14297323-14297403 1.0000 80 chrI:15014010-15014090 1.0000 80 chrII:6943831-6943911 1.0000 80 chrIII:12576011-12576091 1.0000 80 chrI:11579737-11579817 1.0000 80 chrX:12890199-12890279 1.0000 80 chrI:11505580-11505660 1.0000 80 chrIV:9316220-9316300 1.0000 80 chrX:5812325-5812405 1.0000 80 chrII:5772985-5773065 1.0000 80 chrV:13396562-13396642 1.0000 80 chrX:2432658-2432738 1.0000 80 chrX:11031133-11031213 1.0000 80 chrV:7084872-7084952 1.0000 80 chrI:1175819-1175899 1.0000 80 chrIV:7235503-7235583 1.0000 80 chrX:5812123-5812203 1.0000 80 chrX:3348033-3348113 1.0000 80 chrIII:8768031-8768111 1.0000 80 chrV:1154114-1154194 1.0000 80 chrX:13584195-13584275 1.0000 80 chrII:14063198-14063278 1.0000 80 chrX:5475330-5475410 1.0000 80 chrIII:4905587-4905667 1.0000 80 chrIV:9191343-9191423 1.0000 80 chrX:5707998-5708078 1.0000 80 chrIII:9667962-9668042 1.0000 80 chrV:14524350-14524430 1.0000 80 chrX:2885555-2885635 1.0000 80 chrIII:10856977-10857057 1.0000 80 chrX:1858791-1858871 1.0000 80 chrIII:3036123-3036203 1.0000 80 chrX:8386200-8386280 1.0000 80 chrV:4731559-4731639 1.0000 80 chrIII:4666778-4666858 1.0000 80 chrV:12780390-12780470 1.0000 80 chrI:1034359-1034439 1.0000 80 chrI:13372953-13373033 1.0000 80 chrII:2752707-2752787 1.0000 80 chrII:11635110-11635190 1.0000 80 chrX:13950780-13950860 1.0000 80 chrX:4523992-4524072 1.0000 80 chrV:4194995-4195075 1.0000 80 chrI:4132273-4132353 1.0000 80 chrX:5591986-5592066 1.0000 80 chrX:8286861-8286941 1.0000 80 chrIII:8865491-8865571 1.0000 80 chrV:13962193-13962273 1.0000 80 chrIII:4568712-4568792 1.0000 80 chrIV:11026148-11026228 1.0000 80 chrII:15263183-15263263 1.0000 80 chrX:3994619-3994699 1.0000 80 chrI:9128873-9128953 1.0000 80 chrV:15551796-15551876 1.0000 80 chrIII:11870144-11870224 1.0000 80 chrX:1319944-1320024 1.0000 80 chrIV:6632002-6632082 1.0000 80 chrV:11039749-11039829 1.0000 80 chrIII:11746873-11746953 1.0000 80 chrIII:11119488-11119568 1.0000 80 chrIII:5211187-5211267 1.0000 80 chrIII:13061234-13061314 1.0000 80 chrIII:3916800-3916880 1.0000 80 chrX:2536488-2536568 1.0000 80 chrX:5686311-5686391 1.0000 80 chrI:7518624-7518704 1.0000 80 chrII:8547115-8547195 1.0000 80 chrIV:3524800-3524880 1.0000 80 chrIV:11635769-11635849 1.0000 80 chrIII:3175118-3175198 1.0000 80 chrV:1871899-1871979 1.0000 80 chrIII:11946504-11946584 1.0000 80 chrIII:4369491-4369571 1.0000 80 chrIV:1388176-1388256 1.0000 80 chrII:9566242-9566322 1.0000 80 chrIV:192207-192287 1.0000 80 chrX:8638882-8638962 1.0000 80 chrV:11029498-11029578 1.0000 80 chrII:10169555-10169635 1.0000 80 chrX:16147766-16147846 1.0000 80 chrX:17030502-17030582 1.0000 80 chrIII:4171143-4171223 1.0000 80 chrIII:5555085-5555165 1.0000 80 chrV:15085582-15085662 1.0000 80 chrII:12339258-12339338 1.0000 80 chrI:1958531-1958611 1.0000 80 chrX:10146705-10146785 1.0000 80 chrX:6742145-6742225 1.0000 80 chrX:10435769-10435849 1.0000 80 chrII:4701497-4701577 1.0000 80 chrIII:4087809-4087889 1.0000 80 chrII:6491883-6491963 1.0000 80 chrIV:143979-144059 1.0000 80 chrIV:9477747-9477827 1.0000 80 chrX:11546654-11546734 1.0000 80 chrIII:12351457-12351537 1.0000 80 chrV:15082442-15082522 1.0000 80 chrIII:4721955-4722035 1.0000 80 chrI:14721592-14721672 1.0000 80 chrX:10963841-10963921 1.0000 80 chrV:12596955-12597035 1.0000 80 chrIII:11371428-11371508 1.0000 80 chrII:3521524-3521604 1.0000 80 chrV:14697056-14697136 1.0000 80 chrV:16356053-16356133 1.0000 80 chrI:14737394-14737474 1.0000 80 chrIV:1420263-1420343 1.0000 80 chrX:15742021-15742101 1.0000 80 chrX:13264661-13264741 1.0000 80 chrV:10356041-10356121 1.0000 80 chrIV:1745749-1745829 1.0000 80 chrV:6879613-6879693 1.0000 80 chrI:6799628-6799708 1.0000 80 chrV:18981139-18981219 1.0000 80 chrIV:17087578-17087658 1.0000 80 chrIII:8106658-8106738 1.0000 80 chrI:9988937-9989017 1.0000 80 chrII:5292290-5292370 1.0000 80 chrIII:4470878-4470958 1.0000 80 chrIII:9861662-9861742 1.0000 80 chrI:461677-461757 1.0000 80 chrII:1246961-1247041 1.0000 80 chrII:10872673-10872753 1.0000 80 chrV:13468359-13468439 1.0000 80 chrV:9503537-9503617 1.0000 80 chrIV:10821976-10822056 1.0000 80 chrII:11620177-11620257 1.0000 80 chrI:10235244-10235324 1.0000 80 chrX:12480558-12480638 1.0000 80 chrIV:13887597-13887677 1.0000 80 chrI:13310410-13310490 1.0000 80 chrX:6292296-6292376 1.0000 80 chrII:6061646-6061726 1.0000 80 chrII:8107280-8107360 1.0000 80 chrIV:16492504-16492584 1.0000 80 chrIV:7580355-7580435 1.0000 80 chrIII:10624805-10624885 1.0000 80 chrIII:7520799-7520879 1.0000 80 chrV:19125994-19126074 1.0000 80 chrX:14804821-14804901 1.0000 80 chrII:14405286-14405366 1.0000 80 chrV:11610605-11610685 1.0000 80 chrIII:5172637-5172717 1.0000 80 chrX:16928266-16928346 1.0000 80 chrII:14804737-14804817 1.0000 80 chrX:13121259-13121339 1.0000 80 chrX:6593538-6593618 1.0000 80 chrII:9591260-9591340 1.0000 80 chrII:14528426-14528506 1.0000 80 chrII:13976281-13976361 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_eyg-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/eyg-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.243 C 0.254 G 0.258 T 0.245 Background letter frequencies (from file dataset with add-one prior applied): A 0.243 C 0.254 G 0.258 T 0.245 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAAAATWA MEME-1 width = 8 sites = 46 llr = 365 E-value = 1.6e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAATWA MEME-1 Description -------------------------------------------------------------------------------- Simplified A aaaa9:65 pos.-specific C :::::2:: probability G :::::212 matrix T ::::1632 bits 2.0 **** 1.8 **** 1.6 ***** 1.4 ***** Relative 1.2 ***** Entropy 1.0 ***** (11.5 bits) 0.8 ***** 0.6 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAATAA consensus GTG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATWA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:1388176-1388256 30 1.23e-05 GCAAAAATAA AAAAATAA ACTTCCCATG chrIII:3175118-3175198 15 1.23e-05 TCCCCCAAAA AAAAATAA ATCCACAAGC chrIII:8768031-8768111 3 1.23e-05 AT AAAAATAA ACCGATGACA chrI:1175819-1175899 7 1.23e-05 TCCAAG AAAAATAA TAATCGAGAA chrV:7084872-7084952 23 1.23e-05 CATGCTCGAA AAAAATAA AACGCGCCGG chrIII:7199023-7199103 46 1.23e-05 GCGGTAATTC AAAAATAA TATTTTAAGG chrI:6532106-6532186 73 1.23e-05 TATTAAACAG AAAAATAA chrV:11039749-11039829 46 2.46e-05 AAACTGTTCA AAAAATTA GAAGGGTCTC chrII:5836467-5836547 23 2.46e-05 GATTTGTGAG AAAAATTA GTTGTCTATC chrII:13976281-13976361 11 5.05e-05 TATAAATCTG AAAAAGAA TTCCGCGCCG chrI:461677-461757 11 5.05e-05 AATGAATAAA AAAAATAG TATATTAGCT chrX:13264661-13264741 13 5.05e-05 GAAAAAATCA AAAAAGAA ATCCGTCGAA chrIII:13061234-13061314 4 5.05e-05 TCA AAAAATAG TGTGAAAATG chrI:4132273-4132353 4 5.05e-05 ATA AAAAAGAA CAGAATTTCT chrIII:8356466-8356546 9 5.05e-05 CGGATGCG AAAAAGAA CGATAAGAGA chrI:3176575-3176655 6 5.05e-05 TGAAA AAAAAGAA AATTGGAGAA chrV:15082442-15082522 13 6.29e-05 AACCTTAATA AAAAATAT TCTCTGCAAT chrI:1823164-1823244 14 6.29e-05 CTTTTTTGCT AAAAATAT CTTTCATTTT chrII:3567732-3567812 6 6.29e-05 CACCT AAAAATAT AGATGGTAGT chrI:5659170-5659250 38 6.29e-05 CGGTGGTTCA AAAAATAT TATTTGAAAA chrII:9591260-9591340 8 7.56e-05 GGGACTA AAAAACAA TTCTAGTCCG chrX:12890199-12890279 61 7.56e-05 AAAGTCTCAC AAAAACAA ACAATGAAAA chrII:11393925-11394005 72 7.56e-05 CCGCGCGCGG AAAAACAA A chrII:10872673-10872753 9 1.02e-04 CGATTGTT AAAAATTG CGAAAACAAA chrX:16147766-16147846 17 1.02e-04 ACAGGCAGGC AAAAATTG TGTGTGTGTA chrV:4181904-4181984 62 1.02e-04 TCTTCGAGAG AAAAATTG CGTTTTGTGA chrIV:16415242-16415322 1 1.14e-04 . AAAAATTT TTATCCCATT chrIII:3476329-3476409 61 1.14e-04 TAAATTCTTG AAAAATTT ACAGCATACA chrIII:9667962-9668042 4 1.41e-04 AAT AAAAATGA GACGCCTCAC chrII:14528426-14528506 34 1.67e-04 AGAACTCTGA AAAAACTA AAATTGCAAA chrX:4972206-4972286 35 1.67e-04 CACGTCATCA AAAAAGAT CTCGTCTTTT chrII:14063198-14063278 1 2.05e-04 . AAAATTAA AATAACAATT chrIII:888124-888204 9 2.19e-04 CAGGGGAG AAAAAGTG AAAAACGGGG chrV:975321-975401 12 2.19e-04 TCCATCAACG AAAAAGTG CGAGAATAGT chrIII:647480-647560 59 2.60e-04 ATTTGGCGCC AAAAAGGA TATATTTTTC chrIII:8650438-8650518 30 2.60e-04 CCGGCTGGAG AAAAATGG GGGACTTTGA chrIII:5172637-5172717 28 2.87e-04 TGAGAATTCG AAAAACTG CAGTGGAGCG chrV:11610605-11610685 48 2.87e-04 TCATCTTGCA AAAAATGT GCGCGGGGGT chrIII:11481561-11481641 20 2.87e-04 CACACCAACA AAAAACTG GGTGGCCCGG chrIII:10856977-10857057 71 3.12e-04 TGGTGACTTC AAAAACTT CA chrI:1416032-1416112 61 3.12e-04 AATTGACACT AAAATTTA TAGAAACTTT chrIII:3036123-3036203 5 3.25e-04 TGAG AAAAACGA TTATTATGCA chrX:5686311-5686391 36 3.52e-04 GAGAGAAGAT AAAATGAA GAGATGCGTA chrII:12042299-12042379 62 3.52e-04 ATTCGAATCT AAAATGAA AAATCAGGTT chrIII:640556-640636 8 3.64e-04 AAAATCT AAAATTAT ATGTCATTTA chrX:2432658-2432738 43 5.62e-04 TGCAAAACGC AAAAAAAG TGAATGAGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATWA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1388176-1388256 1.2e-05 29_[+1]_43 chrIII:3175118-3175198 1.2e-05 14_[+1]_58 chrIII:8768031-8768111 1.2e-05 2_[+1]_70 chrI:1175819-1175899 1.2e-05 6_[+1]_66 chrV:7084872-7084952 1.2e-05 22_[+1]_50 chrIII:7199023-7199103 1.2e-05 45_[+1]_27 chrI:6532106-6532186 1.2e-05 72_[+1] chrV:11039749-11039829 2.5e-05 45_[+1]_27 chrII:5836467-5836547 2.5e-05 22_[+1]_50 chrII:13976281-13976361 5.1e-05 10_[+1]_62 chrI:461677-461757 5.1e-05 10_[+1]_62 chrX:13264661-13264741 5.1e-05 12_[+1]_60 chrIII:13061234-13061314 5.1e-05 3_[+1]_69 chrI:4132273-4132353 5.1e-05 3_[+1]_69 chrIII:8356466-8356546 5.1e-05 8_[+1]_64 chrI:3176575-3176655 5.1e-05 5_[+1]_67 chrV:15082442-15082522 6.3e-05 12_[+1]_60 chrI:1823164-1823244 6.3e-05 13_[+1]_59 chrII:3567732-3567812 6.3e-05 5_[+1]_67 chrI:5659170-5659250 6.3e-05 37_[+1]_35 chrII:9591260-9591340 7.6e-05 7_[+1]_65 chrX:12890199-12890279 7.6e-05 60_[+1]_12 chrII:11393925-11394005 7.6e-05 71_[+1]_1 chrII:10872673-10872753 0.0001 8_[+1]_64 chrX:16147766-16147846 0.0001 16_[+1]_56 chrV:4181904-4181984 0.0001 61_[+1]_11 chrIV:16415242-16415322 0.00011 [+1]_72 chrIII:3476329-3476409 0.00011 60_[+1]_12 chrIII:9667962-9668042 0.00014 3_[+1]_69 chrII:14528426-14528506 0.00017 33_[+1]_39 chrX:4972206-4972286 0.00017 34_[+1]_38 chrII:14063198-14063278 0.00021 [+1]_72 chrIII:888124-888204 0.00022 8_[+1]_64 chrV:975321-975401 0.00022 11_[+1]_61 chrIII:647480-647560 0.00026 58_[+1]_14 chrIII:8650438-8650518 0.00026 29_[+1]_43 chrIII:5172637-5172717 0.00029 27_[+1]_45 chrV:11610605-11610685 0.00029 47_[+1]_25 chrIII:11481561-11481641 0.00029 19_[+1]_53 chrIII:10856977-10857057 0.00031 70_[+1]_2 chrI:1416032-1416112 0.00031 60_[+1]_12 chrIII:3036123-3036203 0.00033 4_[+1]_68 chrX:5686311-5686391 0.00035 35_[+1]_37 chrII:12042299-12042379 0.00035 61_[+1]_11 chrIII:640556-640636 0.00036 7_[+1]_65 chrX:2432658-2432738 0.00056 42_[+1]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATWA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAATWA width=8 seqs=46 chrIV:1388176-1388256 ( 30) AAAAATAA 1 chrIII:3175118-3175198 ( 15) AAAAATAA 1 chrIII:8768031-8768111 ( 3) AAAAATAA 1 chrI:1175819-1175899 ( 7) AAAAATAA 1 chrV:7084872-7084952 ( 23) AAAAATAA 1 chrIII:7199023-7199103 ( 46) AAAAATAA 1 chrI:6532106-6532186 ( 73) AAAAATAA 1 chrV:11039749-11039829 ( 46) AAAAATTA 1 chrII:5836467-5836547 ( 23) AAAAATTA 1 chrII:13976281-13976361 ( 11) AAAAAGAA 1 chrI:461677-461757 ( 11) AAAAATAG 1 chrX:13264661-13264741 ( 13) AAAAAGAA 1 chrIII:13061234-13061314 ( 4) AAAAATAG 1 chrI:4132273-4132353 ( 4) AAAAAGAA 1 chrIII:8356466-8356546 ( 9) AAAAAGAA 1 chrI:3176575-3176655 ( 6) AAAAAGAA 1 chrV:15082442-15082522 ( 13) AAAAATAT 1 chrI:1823164-1823244 ( 14) AAAAATAT 1 chrII:3567732-3567812 ( 6) AAAAATAT 1 chrI:5659170-5659250 ( 38) AAAAATAT 1 chrII:9591260-9591340 ( 8) AAAAACAA 1 chrX:12890199-12890279 ( 61) AAAAACAA 1 chrII:11393925-11394005 ( 72) AAAAACAA 1 chrII:10872673-10872753 ( 9) AAAAATTG 1 chrX:16147766-16147846 ( 17) AAAAATTG 1 chrV:4181904-4181984 ( 62) AAAAATTG 1 chrIV:16415242-16415322 ( 1) AAAAATTT 1 chrIII:3476329-3476409 ( 61) AAAAATTT 1 chrIII:9667962-9668042 ( 4) AAAAATGA 1 chrII:14528426-14528506 ( 34) AAAAACTA 1 chrX:4972206-4972286 ( 35) AAAAAGAT 1 chrII:14063198-14063278 ( 1) AAAATTAA 1 chrIII:888124-888204 ( 9) AAAAAGTG 1 chrV:975321-975401 ( 12) AAAAAGTG 1 chrIII:647480-647560 ( 59) AAAAAGGA 1 chrIII:8650438-8650518 ( 30) AAAAATGG 1 chrIII:5172637-5172717 ( 28) AAAAACTG 1 chrV:11610605-11610685 ( 48) AAAAATGT 1 chrIII:11481561-11481641 ( 20) AAAAACTG 1 chrIII:10856977-10857057 ( 71) AAAAACTT 1 chrI:1416032-1416112 ( 61) AAAATTTA 1 chrIII:3036123-3036203 ( 5) AAAAACGA 1 chrX:5686311-5686391 ( 36) AAAATGAA 1 chrII:12042299-12042379 ( 62) AAAATGAA 1 chrIII:640556-640636 ( 8) AAAATTAT 1 chrX:2432658-2432738 ( 43) AAAAAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATWA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5224 E= 1.6e-005 204 -1217 -1217 -1217 204 -1217 -1217 -1217 204 -1217 -1217 -1217 204 -1217 -1217 -1217 187 -1217 -1217 -117 -348 -55 -11 121 127 -1217 -125 32 116 -1217 -11 -17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATWA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 1.6e-005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.891304 0.000000 0.000000 0.108696 0.021739 0.173913 0.239130 0.565217 0.586957 0.000000 0.108696 0.304348 0.543478 0.000000 0.239130 0.217391 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATWA MEME-1 regular expression -------------------------------------------------------------------------------- AAAAA[TG][AT][AGT] -------------------------------------------------------------------------------- Time 10.00 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTHTTTT MEME-2 width = 8 sites = 30 llr = 270 E-value = 5.3e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTHTTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2:3:::: pos.-specific C :::3:::: probability G :::::::3 matrix T a8a4aaa7 bits 2.0 * * *** 1.8 * * *** 1.6 * * *** 1.4 * * *** Relative 1.2 *** **** Entropy 1.0 *** **** (13.0 bits) 0.8 *** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus A A G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTHTTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:14737394-14737474 12 1.30e-05 ATGCGTTAAA TTTTTTTT GGCATAGACT chrX:3994619-3994699 64 1.30e-05 AACGCATACA TTTTTTTT TGATTTATT chrI:1034359-1034439 72 1.30e-05 TGAATTGATT TTTTTTTT T chrII:4672728-4672808 23 1.30e-05 CTTACTCATT TTTTTTTT GCAGTGTGAC chrV:13468359-13468439 61 3.93e-05 GCATTTTTAT TTTATTTT TTGTTTTTAC chrX:10963841-10963921 66 3.93e-05 GCATATATAT TTTATTTT CTCACTA chrIII:4721955-4722035 45 3.93e-05 CTCTGCGCAC TTTCTTTT ACTCTCTTTT chrIV:6632002-6632082 73 3.93e-05 AACTGGAGTA TTTATTTT chrX:2885555-2885635 43 3.93e-05 TAGAGGTTAT TTTCTTTT CGGGGTCCCC chrIII:4905587-4905667 25 3.93e-05 TTTAATACAA TTTCTTTT TGAAAATTGG chrII:14063198-14063278 17 3.93e-05 AAAATAACAA TTTCTTTT TTAAAAGTTT chrII:6839003-6839083 6 3.93e-05 ACTGA TTTATTTT TCTCTTTGAC chrII:7708741-7708821 61 3.93e-05 ACACGAGTGT TTTATTTT TTAGCCCAAG chrX:8646490-8646570 63 3.93e-05 GCATGGGAAG TTTCTTTT TGAATTTTGA chrX:5275456-5275536 68 3.93e-05 TTACTAGTTG TTTCTTTT TTTCT chrII:13976281-13976361 30 5.30e-05 TCCGCGCCGA TTTTTTTG CCGGCAAATG chrV:10356041-10356121 16 5.30e-05 CGGGAATACA TTTTTTTG TCTTTATTAT chrIV:16863655-16863735 48 5.30e-05 TTTTTTGTTG TTTTTTTG TCATTGTTTT chrX:14115616-14115696 36 5.30e-05 CCAGCCCCTC TTTTTTTG TTATAGGCAA chrV:6879613-6879693 18 9.36e-05 CACAAAACGC TATTTTTT GCCTGCAACC chrIV:11635769-11635849 54 9.36e-05 CATTTTCAAG TATTTTTT GTTTATCTTT chrV:11039749-11039829 6 9.36e-05 CTGTT TTTATTTG CAAAACACAA chrI:14708099-14708179 7 9.36e-05 TTCGAA TATTTTTT AAATTCTCCA chrX:8156116-8156196 10 9.36e-05 TGCATGCCT TTTCTTTG CGTGCCATCT chrI:11202506-11202586 40 9.36e-05 TCCCTCCCTC TTTCTTTG TATCTGACCC chrII:66496-66576 60 9.36e-05 GGGTCACCCT TTTCTTTG CCTATATTAG chrIII:647480-647560 67 1.20e-04 CCAAAAAGGA TATATTTT TCTATA chrX:5056372-5056452 61 1.20e-04 ggcttcccac tatatttt actctctgtg chrI:933477-933557 55 1.20e-04 ggcttcccac tatatttt actctctgtg chrII:5836467-5836547 45 1.33e-04 TCTATCGAAC TATTTTTG ATTAAGAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTHTTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:14737394-14737474 1.3e-05 11_[+2]_61 chrX:3994619-3994699 1.3e-05 63_[+2]_9 chrI:1034359-1034439 1.3e-05 71_[+2]_1 chrII:4672728-4672808 1.3e-05 22_[+2]_50 chrV:13468359-13468439 3.9e-05 60_[+2]_12 chrX:10963841-10963921 3.9e-05 65_[+2]_7 chrIII:4721955-4722035 3.9e-05 44_[+2]_28 chrIV:6632002-6632082 3.9e-05 72_[+2] chrX:2885555-2885635 3.9e-05 42_[+2]_30 chrIII:4905587-4905667 3.9e-05 24_[+2]_48 chrII:14063198-14063278 3.9e-05 16_[+2]_56 chrII:6839003-6839083 3.9e-05 5_[+2]_67 chrII:7708741-7708821 3.9e-05 60_[+2]_12 chrX:8646490-8646570 3.9e-05 62_[+2]_10 chrX:5275456-5275536 3.9e-05 67_[+2]_5 chrII:13976281-13976361 5.3e-05 29_[+2]_43 chrV:10356041-10356121 5.3e-05 15_[+2]_57 chrIV:16863655-16863735 5.3e-05 47_[+2]_25 chrX:14115616-14115696 5.3e-05 35_[+2]_37 chrV:6879613-6879693 9.4e-05 17_[+2]_55 chrIV:11635769-11635849 9.4e-05 53_[+2]_19 chrV:11039749-11039829 9.4e-05 5_[+2]_67 chrI:14708099-14708179 9.4e-05 6_[+2]_66 chrX:8156116-8156196 9.4e-05 9_[+2]_63 chrI:11202506-11202586 9.4e-05 39_[+2]_33 chrII:66496-66576 9.4e-05 59_[+2]_13 chrIII:647480-647560 0.00012 66_[+2]_6 chrX:5056372-5056452 0.00012 60_[+2]_12 chrI:933477-933557 0.00012 54_[+2]_18 chrII:5836467-5836547 0.00013 44_[+2]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTHTTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTHTTTT width=8 seqs=30 chrI:14737394-14737474 ( 12) TTTTTTTT 1 chrX:3994619-3994699 ( 64) TTTTTTTT 1 chrI:1034359-1034439 ( 72) TTTTTTTT 1 chrII:4672728-4672808 ( 23) TTTTTTTT 1 chrV:13468359-13468439 ( 61) TTTATTTT 1 chrX:10963841-10963921 ( 66) TTTATTTT 1 chrIII:4721955-4722035 ( 45) TTTCTTTT 1 chrIV:6632002-6632082 ( 73) TTTATTTT 1 chrX:2885555-2885635 ( 43) TTTCTTTT 1 chrIII:4905587-4905667 ( 25) TTTCTTTT 1 chrII:14063198-14063278 ( 17) TTTCTTTT 1 chrII:6839003-6839083 ( 6) TTTATTTT 1 chrII:7708741-7708821 ( 61) TTTATTTT 1 chrX:8646490-8646570 ( 63) TTTCTTTT 1 chrX:5275456-5275536 ( 68) TTTCTTTT 1 chrII:13976281-13976361 ( 30) TTTTTTTG 1 chrV:10356041-10356121 ( 16) TTTTTTTG 1 chrIV:16863655-16863735 ( 48) TTTTTTTG 1 chrX:14115616-14115696 ( 36) TTTTTTTG 1 chrV:6879613-6879693 ( 18) TATTTTTT 1 chrIV:11635769-11635849 ( 54) TATTTTTT 1 chrV:11039749-11039829 ( 6) TTTATTTG 1 chrI:14708099-14708179 ( 7) TATTTTTT 1 chrX:8156116-8156196 ( 10) TTTCTTTG 1 chrI:11202506-11202586 ( 40) TTTCTTTG 1 chrII:66496-66576 ( 60) TTTCTTTG 1 chrIII:647480-647560 ( 67) TATATTTT 1 chrX:5056372-5056452 ( 61) TATATTTT 1 chrI:933477-933557 ( 55) TATATTTT 1 chrII:5836467-5836547 ( 45) TATTTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTHTTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 5.3e-007 -1155 -1155 -1155 203 -6 -1155 -1155 165 -1155 -1155 -1155 203 30 24 -1155 71 -1155 -1155 -1155 203 -1155 -1155 -1155 203 -1155 -1155 -1155 203 -1155 -1155 22 152 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTHTTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 5.3e-007 0.000000 0.000000 0.000000 1.000000 0.233333 0.000000 0.000000 0.766667 0.000000 0.000000 0.000000 1.000000 0.300000 0.300000 0.000000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.300000 0.700000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTHTTTT MEME-2 regular expression -------------------------------------------------------------------------------- T[TA]T[TAC]TTT[TG] -------------------------------------------------------------------------------- Time 15.66 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGACGCA MEME-3 width = 8 sites = 15 llr = 152 E-value = 1.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:a:2:a pos.-specific C ::1:a:a: probability G a:9::8:: matrix T :::::::: bits 2.0 ** ** ** 1.8 ** ** ** 1.6 ** ** ** 1.4 ***** ** Relative 1.2 ******** Entropy 1.0 ******** (14.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGACGCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6292296-6292376 71 1.59e-05 ATTTGAGTAA GAGACGCA AG chrIV:13887597-13887677 16 1.59e-05 AGAGAGTGCG GAGACGCA GACCTGGTGT chrII:1246961-1247041 1 1.59e-05 . GAGACGCA GAGTACAGAG chrI:9988937-9989017 34 1.59e-05 GAAGGTGAGA GAGACGCA GAAACGAGAT chrIV:1420263-1420343 32 1.59e-05 GGTGAGTGAG GAGACGCA GTGAAGCGCG chrII:15263183-15263263 52 1.59e-05 GCAGTGCGAA GAGACGCA GAACGTCTCG chrIII:4666778-4666858 35 1.59e-05 TGTAGACCAA GAGACGCA GAACGGCCGA chrI:14612804-14612884 50 1.59e-05 AGGAACATGA GAGACGCA GGATGATCGA chrIII:598385-598465 13 1.59e-05 GAATGCCGGA GAGACGCA GACTGTTCGA chrX:727787-727867 30 1.59e-05 GTCATATTAA GAGACGCA GGCACGGCGG chrIV:11524326-11524406 22 1.59e-05 TGCCAGTGAA GAGACGCA TGCGAGCAGG chrX:4222870-4222950 52 1.59e-05 GGTTACCGCG GAGACGCA GACGAGGCGA chrIV:7580355-7580435 8 3.09e-05 TAAATGG GAGACACA GGCATTCGTT chrX:8286861-8286941 28 6.13e-05 CGTGTAAATC GACACACA ACGGGACACC chrX:14297323-14297403 2 6.13e-05 G GACACACA TCGAACCGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6292296-6292376 1.6e-05 70_[+3]_2 chrIV:13887597-13887677 1.6e-05 15_[+3]_57 chrII:1246961-1247041 1.6e-05 [+3]_72 chrI:9988937-9989017 1.6e-05 33_[+3]_39 chrIV:1420263-1420343 1.6e-05 31_[+3]_41 chrII:15263183-15263263 1.6e-05 51_[+3]_21 chrIII:4666778-4666858 1.6e-05 34_[+3]_38 chrI:14612804-14612884 1.6e-05 49_[+3]_23 chrIII:598385-598465 1.6e-05 12_[+3]_60 chrX:727787-727867 1.6e-05 29_[+3]_43 chrIV:11524326-11524406 1.6e-05 21_[+3]_51 chrX:4222870-4222950 1.6e-05 51_[+3]_21 chrIV:7580355-7580435 3.1e-05 7_[+3]_65 chrX:8286861-8286941 6.1e-05 27_[+3]_45 chrX:14297323-14297403 6.1e-05 1_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGACGCA width=8 seqs=15 chrX:6292296-6292376 ( 71) GAGACGCA 1 chrIV:13887597-13887677 ( 16) GAGACGCA 1 chrII:1246961-1247041 ( 1) GAGACGCA 1 chrI:9988937-9989017 ( 34) GAGACGCA 1 chrIV:1420263-1420343 ( 32) GAGACGCA 1 chrII:15263183-15263263 ( 52) GAGACGCA 1 chrIII:4666778-4666858 ( 35) GAGACGCA 1 chrI:14612804-14612884 ( 50) GAGACGCA 1 chrIII:598385-598465 ( 13) GAGACGCA 1 chrX:727787-727867 ( 30) GAGACGCA 1 chrIV:11524326-11524406 ( 22) GAGACGCA 1 chrX:4222870-4222950 ( 52) GAGACGCA 1 chrIV:7580355-7580435 ( 8) GAGACACA 1 chrX:8286861-8286941 ( 28) GACACACA 1 chrX:14297323-14297403 ( 2) GACACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1725 E= 1.0e-001 -1055 -1055 195 -1055 204 -1055 -1055 -1055 -1055 -93 175 -1055 204 -1055 -1055 -1055 -1055 198 -1055 -1055 -28 -1055 163 -1055 -1055 198 -1055 -1055 204 -1055 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.0e-001 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.133333 0.866667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 regular expression -------------------------------------------------------------------------------- GAGAC[GA]CA -------------------------------------------------------------------------------- Time 19.32 secs. ******************************************************************************** ******************************************************************************** MOTIF GMGCGCGS MEME-4 width = 8 sites = 54 llr = 411 E-value = 2.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GMGCGCGS MEME-4 Description -------------------------------------------------------------------------------- Simplified A :3::::2: pos.-specific C :5:7:a:7 probability G a:a:a:63 matrix T :2:3::2: bits 2.0 * ** 1.8 * ** 1.6 * * ** 1.4 * * ** Relative 1.2 * **** Entropy 1.0 * **** * (11.0 bits) 0.8 * **** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGCGC consensus A T TG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCGS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:16492504-16492584 56 1.84e-05 AAGGAGCGGG GCGCGCGC GGCGACACAG chrIV:1420263-1420343 47 1.84e-05 GCAGTGAAGC GCGCGCGC ACGCGACGCG chrI:14721592-14721672 29 1.84e-05 TTTGCAATGC GCGCGCGC GGTTTTCGCA chrIII:5555085-5555165 52 1.84e-05 TGCGCAAAAA GCGCGCGC ACATTGCGTT chrIII:3916800-3916880 32 1.84e-05 TGCAAACACT GCGCGCGC AGCTTGCAAG chrII:15263183-15263263 19 1.84e-05 TTCCGCGCGC GCGCGCGC TCTTCGGTAT chrV:4731559-4731639 41 1.84e-05 TTGCAAAAAC GCGCGCGC GCATTGCATG chrII:7708741-7708821 13 1.84e-05 ACAATGCAAT GCGCGCGC ACGGTTTTTG chrI:14708099-14708179 69 1.84e-05 TGCCATCCCC GCGCGCGC AGTG chrIII:13721286-13721366 72 1.84e-05 GCCCGGGAAT GCGCGCGC G chrII:11537323-11537403 24 1.84e-05 TGCTGTGAGC GCGCGCGC GCGAGCGCAC chrI:10235244-10235324 20 3.61e-05 AGACAAATCG GAGCGCGC CCTTCTCTGT chrX:11546654-11546734 71 3.61e-05 TATTCCAAAC GAGCGCGC AG chrI:6175186-6175266 60 3.61e-05 AAACCGTGAA GAGCGCGC CCCGAGTGCA chrIII:4171143-4171223 21 5.48e-05 AATGTCATCT GCGCGCGG CATATCTGCA chrV:13962193-13962273 13 5.48e-05 TGCATAAACT GCGCGCGG CAACTGCAAA chrII:11393925-11394005 64 5.48e-05 AAGAGACGCC GCGCGCGG AAAAACAAA chrV:16356053-16356133 1 9.04e-05 . GCGTGCGC GAGTGCGCAC chrX:6742145-6742225 1 9.04e-05 . GCGTGCGC AGCCCAAAGC chrV:11610605-11610685 32 1.25e-04 TATACAATGT GCGCGCTC ATCTTGCAAA chrIV:1745749-1745829 57 1.25e-04 CTCCTATCAA GCGCGCTC CATCGAACCC chrX:1319944-1320024 59 1.25e-04 CAACACACAC GCGCGCAC CGAGGCACTG chrII:8325314-8325394 25 1.25e-04 AATTTGCAAT GCGCGCAC GCAGTTTTGC chrX:5812325-5812405 59 1.60e-04 GTGTAGAAAA GAGTGCGC GGTACCAGGC chrX:5995784-5995864 64 1.60e-04 GGCAAGGGCC GAGTGCGC GTCCGTGTC chrV:19125994-19126074 71 2.12e-04 TCAGTTGGGA GAGCGCAC GA chrX:6292296-6292376 26 2.12e-04 CATGCAAAGC GAGCGCTC TACCCCTGAG chrV:9503537-9503617 45 2.12e-04 CTCAGGGGTA GAGCGCTC GCTTCGCATG chrII:5292290-5292370 62 2.12e-04 CTCAGTGGTA GAGCGCTC CCTTAGCATG chrI:7518624-7518704 65 2.12e-04 AGAGACGAGC GAGCGCTC AATTCTGA chrIII:3036123-3036203 61 2.12e-04 GATTTTCGAA GAGCGCAC ACACACGAGG chrII:5772985-5773065 65 2.12e-04 GGGAAGAAGA GAGCGCAC TCTCATTT chrIII:7199023-7199103 13 2.12e-04 AAATTCAAAT GTGCGCGG CCACGGCCAC chrIV:11310774-11310854 19 2.12e-04 AAGAGGAAAA GTGCGCGG CGGGCTTGCA chrII:7001609-7001689 38 2.12e-04 CTCAGGGGTA GAGCGCTC GCTTTGCATG chrII:8716511-8716591 30 2.12e-04 CAATAATAAA GTGCGCGG GTAGTTTGCA chrII:4238060-4238140 41 2.30e-04 TTGCGAAAAT GCGTGCGG CGCGTTGCAA chrX:10146705-10146785 41 2.65e-04 AGGGAGCGTT GCGCGCAG CTGGGCCATT chrV:2638653-2638733 70 2.65e-04 CCGTGAAAAT GCGCGCTG CGG chrII:3521524-3521604 40 2.82e-04 CAGGCCGAAA GTGTGCGC CACTCGGTGT chrV:7465666-7465746 34 3.16e-04 TGTTTCGAGG GTGCGCTC CCGAAACTAG chrV:14524350-14524430 41 3.50e-04 GCAAGATTGT GCGTGCTC GCGGTTGTGT chrIII:5564922-5565002 49 3.67e-04 ACTCGCGCGG GAGTGCGG GAGCTCAATA chrII:11635110-11635190 69 4.01e-04 GAGCGGCGGA GAGCGCAG AGAC chrIII:598385-598465 33 4.01e-04 CTGTTCGATG GAGCGCAG CATGGCTAAT chrI:1958531-1958611 36 4.50e-04 TTGCGCAACG GTGTGCGG CGGCCTTGCA chrX:16147766-16147846 36 4.50e-04 GTGTGTGTAT GTGTGCGG GAGGGCGGCG chrII:2752707-2752787 19 4.50e-04 TCGTTGAAAA GTGTGCGG TGGGGCGCGA chrX:3348033-3348113 31 4.50e-04 TTGAGTGGTA GTGTGCGG TACTTCGGTC chrX:5818402-5818482 58 4.85e-04 TCAGTGGTCC GTGCGCAG TTTTCCGCGT chrI:4132273-4132353 68 5.19e-04 TAACCGTGCG GCGTGCAG CGTTC chrIV:9269117-9269197 23 5.51e-04 TGTTGCAGTG GTGTGCTC ACTCCCCCTC chrX:5591986-5592066 72 5.69e-04 GGCCAACCCG CCGCGCGC G chrIII:3664396-3664476 25 5.69e-04 TTGCAACACG CCGCGCGC ATTTCGCAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCGS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:16492504-16492584 1.8e-05 55_[+4]_17 chrIV:1420263-1420343 1.8e-05 46_[+4]_26 chrI:14721592-14721672 1.8e-05 28_[+4]_44 chrIII:5555085-5555165 1.8e-05 51_[+4]_21 chrIII:3916800-3916880 1.8e-05 31_[+4]_41 chrII:15263183-15263263 1.8e-05 18_[+4]_54 chrV:4731559-4731639 1.8e-05 40_[+4]_32 chrII:7708741-7708821 1.8e-05 12_[+4]_60 chrI:14708099-14708179 1.8e-05 68_[+4]_4 chrIII:13721286-13721366 1.8e-05 71_[+4]_1 chrII:11537323-11537403 1.8e-05 23_[+4]_49 chrI:10235244-10235324 3.6e-05 19_[+4]_53 chrX:11546654-11546734 3.6e-05 70_[+4]_2 chrI:6175186-6175266 3.6e-05 59_[+4]_13 chrIII:4171143-4171223 5.5e-05 20_[+4]_52 chrV:13962193-13962273 5.5e-05 12_[+4]_60 chrII:11393925-11394005 5.5e-05 63_[+4]_9 chrV:16356053-16356133 9e-05 [+4]_72 chrX:6742145-6742225 9e-05 [+4]_72 chrV:11610605-11610685 0.00013 31_[+4]_41 chrIV:1745749-1745829 0.00013 56_[+4]_16 chrX:1319944-1320024 0.00013 58_[+4]_14 chrII:8325314-8325394 0.00013 24_[+4]_48 chrX:5812325-5812405 0.00016 58_[+4]_14 chrX:5995784-5995864 0.00016 63_[+4]_9 chrV:19125994-19126074 0.00021 70_[+4]_2 chrX:6292296-6292376 0.00021 25_[+4]_47 chrV:9503537-9503617 0.00021 44_[+4]_28 chrII:5292290-5292370 0.00021 61_[+4]_11 chrI:7518624-7518704 0.00021 64_[+4]_8 chrIII:3036123-3036203 0.00021 60_[+4]_12 chrII:5772985-5773065 0.00021 64_[+4]_8 chrIII:7199023-7199103 0.00021 12_[+4]_60 chrIV:11310774-11310854 0.00021 18_[+4]_54 chrII:7001609-7001689 0.00021 37_[+4]_35 chrII:8716511-8716591 0.00021 29_[+4]_43 chrII:4238060-4238140 0.00023 40_[+4]_32 chrX:10146705-10146785 0.00027 40_[+4]_32 chrV:2638653-2638733 0.00027 69_[+4]_3 chrII:3521524-3521604 0.00028 39_[+4]_33 chrV:7465666-7465746 0.00032 33_[+4]_39 chrV:14524350-14524430 0.00035 40_[+4]_32 chrIII:5564922-5565002 0.00037 48_[+4]_24 chrII:11635110-11635190 0.0004 68_[+4]_4 chrIII:598385-598465 0.0004 32_[+4]_40 chrI:1958531-1958611 0.00045 35_[+4]_37 chrX:16147766-16147846 0.00045 35_[+4]_37 chrII:2752707-2752787 0.00045 18_[+4]_54 chrX:3348033-3348113 0.00045 30_[+4]_42 chrX:5818402-5818482 0.00048 57_[+4]_15 chrI:4132273-4132353 0.00052 67_[+4]_5 chrIV:9269117-9269197 0.00055 22_[+4]_50 chrX:5591986-5592066 0.00057 71_[+4]_1 chrIII:3664396-3664476 0.00057 24_[+4]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCGS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GMGCGCGS width=8 seqs=54 chrIV:16492504-16492584 ( 56) GCGCGCGC 1 chrIV:1420263-1420343 ( 47) GCGCGCGC 1 chrI:14721592-14721672 ( 29) GCGCGCGC 1 chrIII:5555085-5555165 ( 52) GCGCGCGC 1 chrIII:3916800-3916880 ( 32) GCGCGCGC 1 chrII:15263183-15263263 ( 19) GCGCGCGC 1 chrV:4731559-4731639 ( 41) GCGCGCGC 1 chrII:7708741-7708821 ( 13) GCGCGCGC 1 chrI:14708099-14708179 ( 69) GCGCGCGC 1 chrIII:13721286-13721366 ( 72) GCGCGCGC 1 chrII:11537323-11537403 ( 24) GCGCGCGC 1 chrI:10235244-10235324 ( 20) GAGCGCGC 1 chrX:11546654-11546734 ( 71) GAGCGCGC 1 chrI:6175186-6175266 ( 60) GAGCGCGC 1 chrIII:4171143-4171223 ( 21) GCGCGCGG 1 chrV:13962193-13962273 ( 13) GCGCGCGG 1 chrII:11393925-11394005 ( 64) GCGCGCGG 1 chrV:16356053-16356133 ( 1) GCGTGCGC 1 chrX:6742145-6742225 ( 1) GCGTGCGC 1 chrV:11610605-11610685 ( 32) GCGCGCTC 1 chrIV:1745749-1745829 ( 57) GCGCGCTC 1 chrX:1319944-1320024 ( 59) GCGCGCAC 1 chrII:8325314-8325394 ( 25) GCGCGCAC 1 chrX:5812325-5812405 ( 59) GAGTGCGC 1 chrX:5995784-5995864 ( 64) GAGTGCGC 1 chrV:19125994-19126074 ( 71) GAGCGCAC 1 chrX:6292296-6292376 ( 26) GAGCGCTC 1 chrV:9503537-9503617 ( 45) GAGCGCTC 1 chrII:5292290-5292370 ( 62) GAGCGCTC 1 chrI:7518624-7518704 ( 65) GAGCGCTC 1 chrIII:3036123-3036203 ( 61) GAGCGCAC 1 chrII:5772985-5773065 ( 65) GAGCGCAC 1 chrIII:7199023-7199103 ( 13) GTGCGCGG 1 chrIV:11310774-11310854 ( 19) GTGCGCGG 1 chrII:7001609-7001689 ( 38) GAGCGCTC 1 chrII:8716511-8716591 ( 30) GTGCGCGG 1 chrII:4238060-4238140 ( 41) GCGTGCGG 1 chrX:10146705-10146785 ( 41) GCGCGCAG 1 chrV:2638653-2638733 ( 70) GCGCGCTG 1 chrII:3521524-3521604 ( 40) GTGTGCGC 1 chrV:7465666-7465746 ( 34) GTGCGCTC 1 chrV:14524350-14524430 ( 41) GCGTGCTC 1 chrIII:5564922-5565002 ( 49) GAGTGCGG 1 chrII:11635110-11635190 ( 69) GAGCGCAG 1 chrIII:598385-598465 ( 33) GAGCGCAG 1 chrI:1958531-1958611 ( 36) GTGTGCGG 1 chrX:16147766-16147846 ( 36) GTGTGCGG 1 chrII:2752707-2752787 ( 19) GTGTGCGG 1 chrX:3348033-3348113 ( 31) GTGTGCGG 1 chrX:5818402-5818482 ( 58) GTGCGCAG 1 chrI:4132273-4132353 ( 68) GCGTGCAG 1 chrIV:9269117-9269197 ( 23) GTGTGCTC 1 chrX:5591986-5592066 ( 72) CCGCGCGC 1 chrIII:3664396-3664476 ( 25) CCGCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCGS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.59303 E= 2.5e-004 -1240 -278 190 -1240 28 98 -1240 -26 -1240 -1240 195 -1240 -1240 155 -1240 8 -1240 -1240 195 -1240 -1240 198 -1240 -1240 -39 -1240 124 -26 -1240 139 37 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCGS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 2.5e-004 0.000000 0.037037 0.962963 0.000000 0.296296 0.500000 0.000000 0.203704 0.000000 0.000000 1.000000 0.000000 0.000000 0.740741 0.000000 0.259259 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.185185 0.000000 0.611111 0.203704 0.000000 0.666667 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCGS MEME-4 regular expression -------------------------------------------------------------------------------- G[CAT]G[CT]GC[GT][CG] -------------------------------------------------------------------------------- Time 22.92 secs. ******************************************************************************** ******************************************************************************** MOTIF CTAGGCCA MEME-5 width = 8 sites = 15 llr = 149 E-value = 1.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::8::::7 pos.-specific C a:2::aa: probability G :::aa::3 matrix T :a:::::: bits 2.0 ** **** 1.8 ** **** 1.6 ** **** 1.4 ** **** Relative 1.2 ******** Entropy 1.0 ******** (14.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTAGGCCA consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:7520799-7520879 58 1.58e-05 AATTTGGATT CTAGGCCA TGCAGTCTTT chrV:13468359-13468439 13 1.58e-05 TGTGCGTTTT CTAGGCCA TTTTGGCGTG chrV:18981139-18981219 49 1.58e-05 TCAGAGTTTC CTAGGCCA CCGCCGGTGT chrV:15085582-15085662 9 1.58e-05 GGAAGAAA CTAGGCCA GCAGGCCACG chrII:2752707-2752787 62 1.58e-05 CAGTGGAAAC CTAGGCCA CTGAAGGCGA chrI:1034359-1034439 32 1.58e-05 GCGCGGGTTT CTAGGCCA CGGCCACCGA chrI:15014010-15014090 25 1.58e-05 GGGTGGAATT CTAGGCCA CCAGATCATA chrII:4740157-4740237 27 1.58e-05 GTGCGAGTTT CTAGGCCA CGCGGAAATG chrI:5659170-5659250 3 1.58e-05 TC CTAGGCCA CCACCTCGTT chrII:10872673-10872753 52 3.25e-05 ACACGAAAAC CTAGGCCG GCGGCCGCCA chrV:15082442-15082522 61 3.25e-05 TTGTCGGATT CTAGGCCG CATGCGCAGA chrII:6913459-6913539 46 3.25e-05 GGAGAGTTTT CTAGGCCG TGTGTGCCGC chrIII:11371428-11371508 39 4.90e-05 CACACTGCCA CTCGGCCA CGCGTGCATC chrIV:192207-192287 33 4.90e-05 AGCACGATTT CTCGGCCA CGCGCCGTGT chrV:7084872-7084952 58 6.65e-05 AGAAACCAAC CTCGGCCG CACTGCGCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:7520799-7520879 1.6e-05 57_[+5]_15 chrV:13468359-13468439 1.6e-05 12_[+5]_60 chrV:18981139-18981219 1.6e-05 48_[+5]_24 chrV:15085582-15085662 1.6e-05 8_[+5]_64 chrII:2752707-2752787 1.6e-05 61_[+5]_11 chrI:1034359-1034439 1.6e-05 31_[+5]_41 chrI:15014010-15014090 1.6e-05 24_[+5]_48 chrII:4740157-4740237 1.6e-05 26_[+5]_46 chrI:5659170-5659250 1.6e-05 2_[+5]_70 chrII:10872673-10872753 3.3e-05 51_[+5]_21 chrV:15082442-15082522 3.3e-05 60_[+5]_12 chrII:6913459-6913539 3.3e-05 45_[+5]_27 chrIII:11371428-11371508 4.9e-05 38_[+5]_34 chrIV:192207-192287 4.9e-05 32_[+5]_40 chrV:7084872-7084952 6.7e-05 57_[+5]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTAGGCCA width=8 seqs=15 chrIII:7520799-7520879 ( 58) CTAGGCCA 1 chrV:13468359-13468439 ( 13) CTAGGCCA 1 chrV:18981139-18981219 ( 49) CTAGGCCA 1 chrV:15085582-15085662 ( 9) CTAGGCCA 1 chrII:2752707-2752787 ( 62) CTAGGCCA 1 chrI:1034359-1034439 ( 32) CTAGGCCA 1 chrI:15014010-15014090 ( 25) CTAGGCCA 1 chrII:4740157-4740237 ( 27) CTAGGCCA 1 chrI:5659170-5659250 ( 3) CTAGGCCA 1 chrII:10872673-10872753 ( 52) CTAGGCCG 1 chrV:15082442-15082522 ( 61) CTAGGCCG 1 chrII:6913459-6913539 ( 46) CTAGGCCG 1 chrIII:11371428-11371508 ( 39) CTCGGCCA 1 chrIV:192207-192287 ( 33) CTCGGCCA 1 chrV:7084872-7084952 ( 58) CTCGGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1725 E= 1.2e+001 -1055 198 -1055 -1055 -1055 -1055 -1055 203 172 -34 -1055 -1055 -1055 -1055 195 -1055 -1055 -1055 195 -1055 -1055 198 -1055 -1055 -1055 198 -1055 -1055 159 -1055 5 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.2e+001 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.800000 0.200000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.733333 0.000000 0.266667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-5 regular expression -------------------------------------------------------------------------------- CT[AC]GGCC[AG] -------------------------------------------------------------------------------- Time 26.41 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:933477-933557 2.98e-01 80 chrII:66496-66576 1.93e-01 59_[+2(9.36e-05)]_13 chrIII:3499985-3500065 6.43e-01 80 chrIV:9269117-9269197 1.46e-01 80 chrI:7711724-7711804 1.82e-01 80 chrII:11537323-11537403 1.53e-01 21_[+4(1.84e-05)]_51 chrI:6153771-6153851 8.19e-01 80 chrIV:6646073-6646153 5.41e-01 80 chrI:11202506-11202586 3.85e-01 39_[+2(9.36e-05)]_33 chrIII:13721286-13721366 1.85e-02 71_[+4(1.84e-05)]_1 chrIII:4281077-4281157 8.01e-01 80 chrII:8716511-8716591 1.03e-01 80 chrIII:11481561-11481641 5.16e-01 80 chrI:6175186-6175266 5.38e-03 59_[+4(3.61e-05)]_13 chrI:10585315-10585395 1.43e-01 80 chrIII:8873144-8873224 5.11e-01 80 chrX:5995784-5995864 2.34e-01 80 chrII:5836467-5836547 6.29e-03 22_[+1(2.46e-05)]_50 chrV:10717111-10717191 4.55e-01 80 chrX:8156116-8156196 1.04e-01 9_[+2(9.36e-05)]_63 chrIII:10094669-10094749 9.33e-01 80 chrX:4222870-4222950 2.71e-02 51_[+3(1.59e-05)]_21 chrV:11844890-11844970 7.92e-01 80 chrIV:11524326-11524406 1.31e-02 21_[+3(1.59e-05)]_51 chrX:3914477-3914557 8.60e-01 80 chrI:3873939-3874019 4.25e-01 80 chrV:975321-975401 7.68e-02 80 chrIII:535312-535392 6.05e-01 80 chrIV:14032728-14032808 2.67e-01 80 chrIV:3763557-3763637 9.99e-01 80 chrI:5659170-5659250 4.10e-04 2_[+5(1.58e-05)]_27_[+1(6.29e-05)]_\ 35 chrV:7465666-7465746 4.37e-02 80 chrI:14808446-14808526 6.70e-01 80 chrX:5056372-5056452 4.59e-01 80 chrX:5818402-5818482 5.37e-01 80 chrIV:3227603-3227683 5.19e-01 80 chrIV:6646274-6646354 3.96e-01 80 chrIII:931568-931648 5.54e-01 80 chrI:3176575-3176655 4.30e-02 5_[+1(5.05e-05)]_67 chrII:3567732-3567812 1.55e-01 5_[+1(6.29e-05)]_67 chrI:9268972-9269052 1.30e-01 80 chrX:4616980-4617060 8.24e-02 80 chrI:14708099-14708179 2.77e-03 6_[+2(9.36e-05)]_54_[+4(1.84e-05)]_\ 4 chrX:2802652-2802732 3.89e-01 80 chrX:5275456-5275536 1.61e-01 67_[+2(3.93e-05)]_5 chrX:7232639-7232719 2.75e-01 80 chrX:8646490-8646570 1.43e-01 62_[+2(3.93e-05)]_10 chrV:7230999-7231079 5.33e-02 80 chrII:7001609-7001689 4.58e-01 80 chrIV:3521197-3521277 4.84e-01 80 chrX:727787-727867 3.68e-02 29_[+3(1.59e-05)]_43 chrX:15347832-15347912 2.53e-01 80 chrII:7708741-7708821 1.28e-04 12_[+4(1.84e-05)]_40_[+2(3.93e-05)]_\ 12 chrIV:14872497-14872577 9.62e-01 80 chrIII:3476329-3476409 8.80e-02 80 chrX:14504357-14504437 7.49e-01 80 chrIII:8650438-8650518 1.48e-01 80 chrX:13144320-13144400 7.82e-01 80 chrX:3472442-3472522 3.44e-01 80 chrI:1823164-1823244 7.80e-02 13_[+1(6.29e-05)]_59 chrI:11179355-11179435 4.56e-01 80 chrII:6913459-6913539 9.56e-03 45_[+5(3.25e-05)]_27 chrII:11889565-11889645 7.16e-01 80 chrIV:11857407-11857487 8.18e-01 80 chrII:8325314-8325394 1.25e-02 80 chrIII:888124-888204 3.53e-01 80 chrV:1004032-1004112 8.53e-01 80 chrII:11393925-11394005 9.87e-04 63_[+4(5.48e-05)]_[+1(7.56e-05)]_1 chrIII:4947393-4947473 5.53e-01 80 chrII:6839003-6839083 2.01e-01 5_[+2(3.93e-05)]_67 chrIII:5564922-5565002 2.59e-01 80 chrV:4181904-4181984 3.43e-02 80 chrX:14115616-14115696 1.61e-01 35_[+2(5.30e-05)]_37 chrIV:16863655-16863735 9.91e-02 47_[+2(5.30e-05)]_25 chrX:10555569-10555649 9.60e-01 80 chrIII:8356466-8356546 4.99e-02 8_[+1(5.05e-05)]_64 chrIV:173165-173245 8.74e-01 80 chrIV:16415242-16415322 5.90e-02 80 chrIII:640556-640636 5.03e-01 80 chrII:12042299-12042379 6.33e-02 80 chrIII:598385-598465 2.02e-02 12_[+3(1.59e-05)]_60 chrX:1302455-1302535 7.94e-01 80 chrIII:3664396-3664476 3.32e-01 80 chrV:2638653-2638733 8.23e-02 80 chrI:13421247-13421327 2.64e-01 80 chrIV:11310774-11310854 1.01e-01 80 chrII:4238060-4238140 9.10e-02 80 chrX:4972206-4972286 2.00e-01 80 chrI:14612804-14612884 8.74e-02 49_[+3(1.59e-05)]_23 chrX:12171949-12172029 7.33e-01 80 chrI:1575717-1575797 8.25e-01 80 chrIII:647480-647560 3.43e-02 80 chrIII:4930425-4930505 1.42e-01 80 chrI:6532106-6532186 1.92e-02 72_[+1(1.23e-05)] chrIII:7199023-7199103 4.48e-04 45_[+1(1.23e-05)]_27 chrII:4740157-4740237 3.86e-02 26_[+5(1.58e-05)]_46 chrI:7712750-7712830 5.98e-01 80 chrIV:14496667-14496747 7.86e-01 80 chrI:1416032-1416112 2.92e-01 80 chrII:4672728-4672808 5.35e-03 20_[+2(1.30e-05)]_52 chrX:14297323-14297403 1.94e-01 1_[+3(6.13e-05)]_71 chrI:15014010-15014090 1.65e-02 24_[+5(1.58e-05)]_48 chrII:6943831-6943911 6.38e-01 80 chrIII:12576011-12576091 8.30e-01 80 chrI:11579737-11579817 8.25e-01 80 chrX:12890199-12890279 2.86e-01 60_[+1(7.56e-05)]_12 chrI:11505580-11505660 4.38e-01 80 chrIV:9316220-9316300 5.22e-01 80 chrX:5812325-5812405 1.11e-01 80 chrII:5772985-5773065 1.78e-01 80 chrV:13396562-13396642 3.69e-01 80 chrX:2432658-2432738 9.53e-02 80 chrX:11031133-11031213 2.64e-01 80 chrV:7084872-7084952 2.35e-03 22_[+1(1.23e-05)]_27_[+5(6.65e-05)]_\ 15 chrI:1175819-1175899 1.59e-02 6_[+1(1.23e-05)]_66 chrIV:7235503-7235583 8.44e-01 80 chrX:5812123-5812203 4.60e-01 80 chrX:3348033-3348113 3.34e-01 80 chrIII:8768031-8768111 4.23e-03 2_[+1(1.23e-05)]_70 chrV:1154114-1154194 3.37e-01 80 chrX:13584195-13584275 5.99e-01 80 chrII:14063198-14063278 2.52e-02 16_[+2(3.93e-05)]_56 chrX:5475330-5475410 7.35e-01 80 chrIII:4905587-4905667 2.55e-02 5_[+2(9.36e-05)]_11_[+2(3.93e-05)]_\ 48 chrIV:9191343-9191423 7.33e-01 80 chrX:5707998-5708078 8.60e-01 80 chrIII:9667962-9668042 2.18e-02 28_[+3(4.65e-05)]_44 chrV:14524350-14524430 3.29e-01 80 chrX:2885555-2885635 6.01e-02 42_[+2(3.93e-05)]_30 chrIII:10856977-10857057 2.31e-01 80 chrX:1858791-1858871 9.55e-01 80 chrIII:3036123-3036203 8.32e-03 80 chrX:8386200-8386280 8.25e-01 80 chrV:4731559-4731639 3.61e-02 40_[+4(1.84e-05)]_32 chrIII:4666778-4666858 7.34e-02 34_[+3(1.59e-05)]_38 chrV:12780390-12780470 7.66e-01 80 chrI:1034359-1034439 2.98e-04 31_[+5(1.58e-05)]_30_[+2(1.30e-05)]_\ 3 chrI:13372953-13373033 8.79e-01 80 chrII:2752707-2752787 3.50e-03 61_[+5(1.58e-05)]_11 chrII:11635110-11635190 2.86e-01 80 chrX:13950780-13950860 7.97e-01 80 chrX:4523992-4524072 2.55e-01 80 chrV:4194995-4195075 2.15e-01 80 chrI:4132273-4132353 2.80e-02 3_[+1(5.05e-05)]_69 chrX:5591986-5592066 2.72e-01 80 chrX:8286861-8286941 1.94e-01 27_[+3(6.13e-05)]_45 chrIII:8865491-8865571 8.59e-01 80 chrV:13962193-13962273 8.60e-03 12_[+4(5.48e-05)]_60 chrIII:4568712-4568792 2.18e-01 80 chrIV:11026148-11026228 6.32e-01 80 chrII:15263183-15263263 2.21e-04 12_[+4(1.84e-05)]_31_[+3(1.59e-05)]_\ 21 chrX:3994619-3994699 1.32e-01 63_[+2(1.30e-05)]_9 chrI:9128873-9128953 9.55e-01 80 chrV:15551796-15551876 4.70e-01 80 chrIII:11870144-11870224 2.65e-01 80 chrX:1319944-1320024 1.28e-01 80 chrIV:6632002-6632082 1.42e-02 72_[+2(3.93e-05)] chrV:11039749-11039829 2.53e-03 5_[+2(9.36e-05)]_32_[+1(2.46e-05)]_\ 27 chrIII:11746873-11746953 6.10e-01 80 chrIII:11119488-11119568 1.10e-01 80 chrIII:5211187-5211267 1.14e-01 80 chrIII:13061234-13061314 5.07e-03 3_[+1(5.05e-05)]_69 chrIII:3916800-3916880 1.78e-02 31_[+4(1.84e-05)]_41 chrX:2536488-2536568 6.60e-01 80 chrX:5686311-5686391 2.89e-01 80 chrI:7518624-7518704 7.32e-02 80 chrII:8547115-8547195 5.82e-01 80 chrIV:3524800-3524880 9.31e-01 80 chrIV:11635769-11635849 5.81e-02 53_[+2(9.36e-05)]_19 chrIII:3175118-3175198 2.92e-02 14_[+1(1.23e-05)]_58 chrV:1871899-1871979 8.54e-01 80 chrIII:11946504-11946584 7.36e-02 80 chrIII:4369491-4369571 9.37e-01 80 chrIV:1388176-1388256 5.48e-02 21_[+1(1.23e-05)]_[+1(1.23e-05)]_43 chrII:9566242-9566322 8.64e-01 80 chrIV:192207-192287 1.17e-01 32_[+5(4.90e-05)]_40 chrX:8638882-8638962 8.15e-01 80 chrV:11029498-11029578 6.89e-01 80 chrII:10169555-10169635 9.75e-01 80 chrX:16147766-16147846 1.03e-02 80 chrX:17030502-17030582 8.81e-01 80 chrIII:4171143-4171223 4.14e-02 20_[+4(5.48e-05)]_52 chrIII:5555085-5555165 1.87e-02 51_[+4(1.84e-05)]_21 chrV:15085582-15085662 1.25e-02 8_[+5(1.58e-05)]_64 chrII:12339258-12339338 4.42e-01 80 chrI:1958531-1958611 3.18e-01 80 chrX:10146705-10146785 5.28e-03 80 chrX:6742145-6742225 1.11e-01 [+4(9.04e-05)]_72 chrX:10435769-10435849 3.79e-01 80 chrII:4701497-4701577 6.43e-01 80 chrIII:4087809-4087889 5.12e-01 80 chrII:6491883-6491963 6.25e-01 80 chrIV:143979-144059 7.55e-01 80 chrIV:9477747-9477827 4.69e-01 80 chrX:11546654-11546734 8.20e-03 36_[+3(6.13e-05)]_26_[+4(3.61e-05)]_\ 2 chrIII:12351457-12351537 5.80e-01 80 chrV:15082442-15082522 2.29e-03 12_[+1(6.29e-05)]_40_[+5(3.25e-05)]_\ 12 chrIII:4721955-4722035 3.65e-02 44_[+2(3.93e-05)]_28 chrI:14721592-14721672 1.39e-02 26_[+4(1.84e-05)]_46 chrX:10963841-10963921 2.26e-01 65_[+2(3.93e-05)]_7 chrV:12596955-12597035 3.42e-01 80 chrIII:11371428-11371508 7.96e-02 38_[+5(4.90e-05)]_34 chrII:3521524-3521604 1.59e-01 80 chrV:14697056-14697136 6.64e-01 80 chrV:16356053-16356133 3.85e-01 [+4(9.04e-05)]_72 chrI:14737394-14737474 8.13e-03 11_[+2(1.30e-05)]_61 chrIV:1420263-1420343 3.44e-04 31_[+3(1.59e-05)]_5_[+4(1.84e-05)]_\ 28 chrX:15742021-15742101 8.07e-01 80 chrX:13264661-13264741 2.22e-01 12_[+1(5.05e-05)]_60 chrV:10356041-10356121 4.15e-02 15_[+2(5.30e-05)]_57 chrIV:1745749-1745829 1.15e-01 80 chrV:6879613-6879693 2.11e-01 17_[+2(9.36e-05)]_55 chrI:6799628-6799708 4.31e-01 80 chrV:18981139-18981219 1.41e-02 48_[+5(1.58e-05)]_24 chrIV:17087578-17087658 9.97e-01 80 chrIII:8106658-8106738 1.94e-01 80 chrI:9988937-9989017 3.38e-02 33_[+3(1.59e-05)]_39 chrII:5292290-5292370 1.19e-01 80 chrIII:4470878-4470958 4.17e-01 80 chrIII:9861662-9861742 3.75e-01 80 chrI:461677-461757 2.07e-02 10_[+1(5.05e-05)]_62 chrII:1246961-1247041 4.20e-02 [+3(1.59e-05)]_72 chrII:10872673-10872753 7.34e-03 51_[+5(3.25e-05)]_21 chrV:13468359-13468439 1.24e-03 12_[+5(1.58e-05)]_35_[+2(3.93e-05)]_\ 17 chrV:9503537-9503617 5.23e-01 80 chrIV:10821976-10822056 9.94e-01 80 chrII:11620177-11620257 9.09e-01 80 chrI:10235244-10235324 2.08e-02 19_[+4(3.61e-05)]_53 chrX:12480558-12480638 6.37e-01 80 chrIV:13887597-13887677 3.21e-03 15_[+3(1.59e-05)]_57 chrI:13310410-13310490 7.29e-01 80 chrX:6292296-6292376 1.06e-02 70_[+3(1.59e-05)]_2 chrII:6061646-6061726 1.11e-01 80 chrII:8107280-8107360 2.95e-01 80 chrIV:16492504-16492584 2.13e-02 55_[+4(1.84e-05)]_17 chrIV:7580355-7580435 1.13e-01 7_[+3(3.09e-05)]_65 chrIII:10624805-10624885 1.23e-01 80 chrIII:7520799-7520879 2.29e-02 57_[+5(1.58e-05)]_15 chrV:19125994-19126074 1.40e-01 80 chrX:14804821-14804901 3.40e-01 80 chrII:14405286-14405366 9.43e-01 80 chrV:11610605-11610685 1.96e-02 29_[+4(7.26e-05)]_43 chrIII:5172637-5172717 2.13e-01 80 chrX:16928266-16928346 8.62e-01 80 chrII:14804737-14804817 9.28e-01 80 chrX:13121259-13121339 9.39e-01 80 chrX:6593538-6593618 5.49e-01 80 chrII:9591260-9591340 8.59e-04 7_[+1(7.56e-05)]_65 chrII:14528426-14528506 4.72e-01 80 chrII:13976281-13976361 6.71e-03 10_[+1(5.05e-05)]_11_[+2(5.30e-05)]_\ 43 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************