******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ets-4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:4986956-4987036 1.0000 80 chrIII:5959204-5959284 1.0000 80 chrIII:4862121-4862201 1.0000 80 chrIII:6013157-6013237 1.0000 80 chrIII:5190348-5190428 1.0000 80 chrIV:13487202-13487282 1.0000 80 chrI:6958875-6958955 1.0000 80 chrIII:5853367-5853447 1.0000 80 chrIII:4999030-4999110 1.0000 80 chrII:11398979-11399059 1.0000 80 chrIII:5564994-5565074 1.0000 80 chrIII:11093624-11093704 1.0000 80 chrIV:10811580-10811660 1.0000 80 chrIII:5803104-5803184 1.0000 80 chrI:9087243-9087323 1.0000 80 chrI:636775-636855 1.0000 80 chrI:13418685-13418765 1.0000 80 chrIII:5102805-5102885 1.0000 80 chrIII:5047384-5047464 1.0000 80 chrI:1271057-1271137 1.0000 80 chrIII:5843119-5843199 1.0000 80 chrI:2487855-2487935 1.0000 80 chrIII:12673515-12673595 1.0000 80 chrI:2996031-2996111 1.0000 80 chrV:2603176-2603256 1.0000 80 chrIII:5710908-5710988 1.0000 80 chrIII:5843880-5843960 1.0000 80 chrIII:5958317-5958397 1.0000 80 chrIII:3322487-3322567 1.0000 80 chrI:11222148-11222228 1.0000 80 chrII:8137458-8137538 1.0000 80 chrIV:4702190-4702270 1.0000 80 chrIII:4905504-4905584 1.0000 80 chrX:3824573-3824653 1.0000 80 chrX:7798482-7798562 1.0000 80 chrV:9422868-9422948 1.0000 80 chrI:8511442-8511522 1.0000 80 chrIV:6747808-6747888 1.0000 80 chrIV:4042416-4042496 1.0000 80 chrIII:13119722-13119802 1.0000 80 chrIV:11315042-11315122 1.0000 80 chrV:15065507-15065587 1.0000 80 chrIII:5108909-5108989 1.0000 80 chrIII:1540292-1540372 1.0000 80 chrV:16553127-16553207 1.0000 80 chrI:10469107-10469187 1.0000 80 chrI:9393800-9393880 1.0000 80 chrV:20424939-20425019 1.0000 80 chrII:484580-484660 1.0000 80 chrV:20090846-20090926 1.0000 80 chrI:9080098-9080178 1.0000 80 chrII:6097614-6097694 1.0000 80 chrIII:13439549-13439629 1.0000 80 chrI:3982960-3983040 1.0000 80 chrIV:1687259-1687339 1.0000 80 chrIV:4712601-4712681 1.0000 80 chrI:122438-122518 1.0000 80 chrIII:5864461-5864541 1.0000 80 chrIV:9777703-9777783 1.0000 80 chrII:5819841-5819921 1.0000 80 chrI:5281819-5281899 1.0000 80 chrV:14546047-14546127 1.0000 80 chrIII:5129458-5129538 1.0000 80 chrI:3176575-3176655 1.0000 80 chrX:16376141-16376221 1.0000 80 chrIII:10856985-10857065 1.0000 80 chrIV:6887858-6887938 1.0000 80 chrII:10136902-10136982 1.0000 80 chrI:5118944-5119024 1.0000 80 chrII:15089575-15089655 1.0000 80 chrI:6760291-6760371 1.0000 80 chrX:12142693-12142773 1.0000 80 chrV:16022769-16022849 1.0000 80 chrI:13421176-13421256 1.0000 80 chrV:6107623-6107703 1.0000 80 chrI:5659133-5659213 1.0000 80 chrIII:8700732-8700812 1.0000 80 chrI:933476-933556 1.0000 80 chrII:7397638-7397718 1.0000 80 chrIV:16995574-16995654 1.0000 80 chrV:7084906-7084986 1.0000 80 chrX:1853721-1853801 1.0000 80 chrI:9430691-9430771 1.0000 80 chrIII:11286271-11286351 1.0000 80 chrIV:8019935-8020015 1.0000 80 chrI:7251587-7251667 1.0000 80 chrIII:7088068-7088148 1.0000 80 chrI:15013994-15014074 1.0000 80 chrII:14857106-14857186 1.0000 80 chrIII:7199003-7199083 1.0000 80 chrII:3482367-3482447 1.0000 80 chrIV:13533269-13533349 1.0000 80 chrIII:5976543-5976623 1.0000 80 chrIV:17108363-17108443 1.0000 80 chrIII:10064303-10064383 1.0000 80 chrIII:9808293-9808373 1.0000 80 chrII:6383317-6383397 1.0000 80 chrIII:8529067-8529147 1.0000 80 chrX:9113958-9114038 1.0000 80 chrI:1280255-1280335 1.0000 80 chrV:1427341-1427421 1.0000 80 chrIII:3476346-3476426 1.0000 80 chrI:13422635-13422715 1.0000 80 chrII:5649604-5649684 1.0000 80 chrII:4622674-4622754 1.0000 80 chrI:2385157-2385237 1.0000 80 chrI:9402967-9403047 1.0000 80 chrI:10161957-10162037 1.0000 80 chrI:14756445-14756525 1.0000 80 chrIV:16415769-16415849 1.0000 80 chrIII:10811186-10811266 1.0000 80 chrIV:1347120-1347200 1.0000 80 chrII:7537766-7537846 1.0000 80 chrIV:7816560-7816640 1.0000 80 chrI:13470413-13470493 1.0000 80 chrI:4215780-4215860 1.0000 80 chrX:9347696-9347776 1.0000 80 chrV:4798511-4798591 1.0000 80 chrV:12649786-12649866 1.0000 80 chrI:1034364-1034444 1.0000 80 chrI:8125504-8125584 1.0000 80 chrI:2144202-2144282 1.0000 80 chrIII:4912481-4912561 1.0000 80 chrI:2710550-2710630 1.0000 80 chrII:5836541-5836621 1.0000 80 chrV:11933367-11933447 1.0000 80 chrIV:10085838-10085918 1.0000 80 chrV:15082463-15082543 1.0000 80 chrIII:8850799-8850879 1.0000 80 chrI:11664892-11664972 1.0000 80 chrI:853277-853357 1.0000 80 chrII:10714392-10714472 1.0000 80 chrIII:3499998-3500078 1.0000 80 chrIII:11290710-11290790 1.0000 80 chrII:8927413-8927493 1.0000 80 chrIII:5136346-5136426 1.0000 80 chrII:66427-66507 1.0000 80 chrII:11220971-11221051 1.0000 80 chrX:11474321-11474401 1.0000 80 chrIII:7858705-7858785 1.0000 80 chrX:4255003-4255083 1.0000 80 chrIV:4399542-4399622 1.0000 80 chrII:9230643-9230723 1.0000 80 chrIII:8144731-8144811 1.0000 80 chrV:11644298-11644378 1.0000 80 chrIII:5499096-5499176 1.0000 80 chrIII:13187904-13187984 1.0000 80 chrIV:12621621-12621701 1.0000 80 chrII:1500522-1500602 1.0000 80 chrIV:6631977-6632057 1.0000 80 chrIII:5665445-5665525 1.0000 80 chrII:2752705-2752785 1.0000 80 chrX:4853175-4853255 1.0000 80 chrIV:1067511-1067591 1.0000 80 chrX:9917517-9917597 1.0000 80 chrII:10200900-10200980 1.0000 80 chrIII:5426255-5426335 1.0000 80 chrIII:5871915-5871995 1.0000 80 chrV:13625814-13625894 1.0000 80 chrIII:11091813-11091893 1.0000 80 chrIII:5938142-5938222 1.0000 80 chrII:7879495-7879575 1.0000 80 chrI:10095338-10095418 1.0000 80 chrIII:12457005-12457085 1.0000 80 chrX:11693265-11693345 1.0000 80 chrIII:5603774-5603854 1.0000 80 chrIII:13658184-13658264 1.0000 80 chrII:4791431-4791511 1.0000 80 chrIII:5308391-5308471 1.0000 80 chrIII:13423562-13423642 1.0000 80 chrIII:5068954-5069034 1.0000 80 chrIII:12273732-12273812 1.0000 80 chrII:9968500-9968580 1.0000 80 chrI:4247559-4247639 1.0000 80 chrIV:11592972-11593052 1.0000 80 chrII:6734824-6734904 1.0000 80 chrI:5106132-5106212 1.0000 80 chrII:5594380-5594460 1.0000 80 chrII:11221932-11222012 1.0000 80 chrIII:8250447-8250527 1.0000 80 chrI:14945786-14945866 1.0000 80 chrIII:5722015-5722095 1.0000 80 chrX:13585018-13585098 1.0000 80 chrIII:4196738-4196818 1.0000 80 chrII:5511918-5511998 1.0000 80 chrII:7343908-7343988 1.0000 80 chrV:7465713-7465793 1.0000 80 chrII:476169-476249 1.0000 80 chrV:156216-156296 1.0000 80 chrIII:8829363-8829443 1.0000 80 chrIII:5835303-5835383 1.0000 80 chrI:5606904-5606984 1.0000 80 chrX:14127471-14127551 1.0000 80 chrIII:931564-931644 1.0000 80 chrI:12806675-12806755 1.0000 80 chrV:18981150-18981230 1.0000 80 chrI:15052715-15052795 1.0000 80 chrIII:13474637-13474717 1.0000 80 chrV:10672717-10672797 1.0000 80 chrI:13835182-13835262 1.0000 80 chrIII:5827055-5827135 1.0000 80 chrIII:9868278-9868358 1.0000 80 chrV:20832735-20832815 1.0000 80 chrII:2378636-2378716 1.0000 80 chrII:1134666-1134746 1.0000 80 chrIII:11112887-11112967 1.0000 80 chrI:4967575-4967655 1.0000 80 chrII:2454956-2455036 1.0000 80 chrI:3636652-3636732 1.0000 80 chrV:11029474-11029554 1.0000 80 chrV:9536660-9536740 1.0000 80 chrII:7072763-7072843 1.0000 80 chrIII:5689781-5689861 1.0000 80 chrIII:11746875-11746955 1.0000 80 chrIV:11635789-11635869 1.0000 80 chrIII:4930419-4930499 1.0000 80 chrII:10395529-10395609 1.0000 80 chrV:19496536-19496616 1.0000 80 chrII:7857696-7857776 1.0000 80 chrV:2127158-2127238 1.0000 80 chrV:6433679-6433759 1.0000 80 chrIII:5759133-5759213 1.0000 80 chrV:5614257-5614337 1.0000 80 chrIII:11947652-11947732 1.0000 80 chrIV:8973692-8973772 1.0000 80 chrI:3059196-3059276 1.0000 80 chrV:10526087-10526167 1.0000 80 chrII:4603188-4603268 1.0000 80 chrIV:3803421-3803501 1.0000 80 chrX:3379239-3379319 1.0000 80 chrIII:5688325-5688405 1.0000 80 chrII:15218109-15218189 1.0000 80 chrII:6683822-6683902 1.0000 80 chrIV:13289504-13289584 1.0000 80 chrV:10178306-10178386 1.0000 80 chrIII:4343298-4343378 1.0000 80 chrII:4955505-4955585 1.0000 80 chrI:6175157-6175237 1.0000 80 chrIII:10651886-10651966 1.0000 80 chrIII:3540590-3540670 1.0000 80 chrI:1251565-1251645 1.0000 80 chrII:12042353-12042433 1.0000 80 chrI:6252896-6252976 1.0000 80 chrII:9931146-9931226 1.0000 80 chrX:9874614-9874694 1.0000 80 chrII:2451162-2451242 1.0000 80 chrV:1197383-1197463 1.0000 80 chrX:7569845-7569925 1.0000 80 chrII:6061666-6061746 1.0000 80 chrIV:14794405-14794485 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ets-4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ets-4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.262 C 0.234 G 0.235 T 0.268 Background letter frequencies (from file dataset with add-one prior applied): A 0.262 C 0.234 G 0.235 T 0.268 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YGGCCKMG MEME-1 width = 8 sites = 100 llr = 811 E-value = 2.2e-074 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGGCCKMG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::1:25: pos.-specific C 3::9a:4: probability G :aa::5:a matrix T 6::::42: bits 2.1 ** * * 1.9 ** * * 1.7 **** * 1.5 **** * Relative 1.3 **** * Entropy 1.0 **** * (11.7 bits) 0.8 **** * 0.6 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGCCGAG consensus C TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKMG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3379239-3379319 55 1.17e-05 GATTTGCGCA TGGCCGAG CCGGGAAGAA chrII:9968500-9968580 23 1.17e-05 CCCATGGCCG TGGCCGAG TCTACAACTA chrIII:5308391-5308471 65 1.17e-05 CGGGAGGCCA TGGCCGAG TTTTGACC chrIII:5603774-5603854 15 1.17e-05 TAGGCGCGCG TGGCCGAG AAGGAGGCGA chrIII:11290710-11290790 25 1.17e-05 ACACACCGGG TGGCCGAG TGGGGATTTC chrIII:10064303-10064383 14 1.17e-05 AAATCAAGCC TGGCCGAG GTGGCCGTGG chrI:6760291-6760371 28 1.17e-05 AGTTTCCACA TGGCCGAG CTATCTCGTG chrIV:6887858-6887938 28 1.17e-05 ACAAACGTGC TGGCCGAG AATGTTTATG chrIII:12673515-12673595 51 1.17e-05 CACGGCGTGG TGGCCGAG ACCCCGACTC chrI:13835182-13835262 27 2.22e-05 GGGAAAATGA TGGCCGCG GCCGCCATTT chrIII:5068954-5069034 22 2.22e-05 ACCGCGGTTT TGGCCGCG GACTAGTGTT chrI:13470413-13470493 54 2.22e-05 AAAACGCGCG TGGCCGCG AGGGGGAAAT chrIV:1347120-1347200 26 2.22e-05 TTGGCAAAAG TGGCCGCG GCCGAGGAGG chrII:6383317-6383397 39 2.22e-05 TTTTTCCCGA TGGCCGCG GACTAGCCAT chrII:3482367-3482447 7 2.22e-05 TATCCG TGGCCGCG GCCTAAGAAC chrV:16022769-16022849 42 2.22e-05 GGTGGCCGCG TGGCCGCG GACTAAGTGA chrV:20090846-20090926 27 2.22e-05 AACAACACAC TGGCCGCG GCCTAGAAAA chrIV:4042416-4042496 29 2.22e-05 TCTTTTCTCG TGGCCGCG GCCTAGAAAT chrIII:5803104-5803184 15 2.22e-05 AATTTGTTTG TGGCCGCG GTGGCCTAGT chrX:7569845-7569925 1 3.56e-05 . TGGCCTAG TTTTTTCAAT chrIV:13289504-13289584 29 3.56e-05 GTTTGAACGG TGGCCTAG AATCTGCACG chrV:2127158-2127238 39 3.56e-05 CTCCTGTGAA TGGCCTAG AAATTGTGGC chrIII:4930419-4930499 16 3.56e-05 AAAACAGTGT TGGCCTAG TAAATGCGTG chrV:9536660-9536740 59 3.56e-05 CACCCAAACG TGGCCTAG CAATACCCAA chrV:7465713-7465793 14 3.56e-05 GGCATGGACG TGGCCTAG AATTCCCCAA chrIII:4196738-4196818 16 3.56e-05 CAGGATCCAA TGGCCTAG CTTTACCCAG chrII:10200900-10200980 49 3.56e-05 CCGATGGCCG TGGCCTAG GAAACACAAC chrII:2752705-2752785 46 3.56e-05 CGATTGCGCG TGGCCTAG CAGTGGAAAC chrV:11644298-11644378 45 3.56e-05 CCAATGGCCG TGGCCTAG CTTTCTTGGT chrX:4255003-4255083 24 3.56e-05 CACACAACGC TGGCCTAG AATTCTCCAT chrIII:7858705-7858785 69 3.56e-05 ACGCCATCAC TGGCCTAG GTTC chrIII:4912481-4912561 54 3.56e-05 TTCTCGGCCG TGGCCTAG AATATTAGTC chrIV:7816560-7816640 30 3.56e-05 CACCACCGTG TGGCCTAG GAAACTCTTG chrIV:16415769-16415849 22 3.56e-05 CACGGCCGAG TGGCCTAG GAAACTCTTG chrIII:8529067-8529147 25 3.56e-05 GAATCGTCGC TGGCCTAG TTTTCTCTTT chrIII:7199003-7199083 14 3.56e-05 ATTGAACCAT TGGCCTAG AAAATTCAAA chrV:7084906-7084986 8 3.56e-05 CGCCGGC TGGCCTAG AAACCAACCT chrI:5659133-5659213 12 3.56e-05 AACGAAAATA TGGCCTAG AAATATTCGC chrV:6107623-6107703 47 3.56e-05 AACCGGGACG TGGCCTAG CGTTCCGCGA chrX:16376141-16376221 30 3.56e-05 CGATTCGCCG TGGCCTAG AAACCGCGAG chrIII:13439549-13439629 37 3.56e-05 AAAATATCGG TGGCCTAG TGGCCGTGGA chrV:20424939-20425019 35 3.56e-05 TTCCCAATGG TGGCCTAG AAAACCCCGA chrI:9393800-9393880 21 3.56e-05 CACGACATGC TGGCCTAG AAACCTCTGC chrI:636775-636855 30 3.56e-05 AACATGGCCG TGGCCTAG CGTTCCCCTC chrIII:5959204-5959284 18 3.56e-05 TTGCGCTGGT TGGCCTAG CAGCTGCGGT chrII:2451162-2451242 54 4.58e-05 CCGTGGCCGG CGGCCGAG GATTTGCGGC chrX:13585018-13585098 8 4.58e-05 CCACATA CGGCCGAG GTTTCACGCG chrIII:5871915-5871995 29 4.58e-05 GAGGAGTGCA CGGCCGAG AAAAGTCCAA chrII:6097614-6097694 28 4.58e-05 GAGGAGTACA CGGCCGAG CATGCTCCGC chrIII:10651886-10651966 61 5.78e-05 GTCTCTACAG TGGCCTCG TTCTCTCATC chrX:9917517-9917597 11 5.78e-05 TAAACTGCCA TGGCCTCG GGGGACGAGA chrI:4247559-4247639 48 6.69e-05 CTAGGCCACG CGGCCGCG TACTCCTCGA chrX:4853175-4853255 25 6.69e-05 GTCGTATCTT CGGCCGCG GCCACGACCA chrIV:8019935-8020015 6 6.69e-05 TCCCT CGGCCGCG CTGAGATTTC chrII:7397638-7397718 12 6.69e-05 GAGGAGTACA CGGCCGCG CGGCCTAGAA chrII:14857106-14857186 10 7.86e-05 GCCGGCCGC CGGCCTAG GTTTCGCACA chrII:476169-476249 55 9.06e-05 TTGCCGACGA TGGCCGTG TGGGGGTTTC chrX:11693265-11693345 22 9.06e-05 GCTGCACTTG TGGCCGTG GCCTAAGAAT chrI:10161957-10162037 43 9.06e-05 TTTTCGCTAG TGGCCGTG GCCGAACGCG chrX:7798482-7798562 41 9.06e-05 ATGGAGGGTG TGGCCGTG TAAGAGGGGG chrIII:5047384-5047464 65 9.06e-05 ATTGAATTGG TGGCCGTG GAAGAGAA chrV:11029474-11029554 31 1.14e-04 TCGATTTCTG CGGCCTCG TCGAGCATTT chrIV:1687259-1687339 14 1.26e-04 TGCCTCCAGC TGGCCACG CCCAGAAAAT chrIV:8973692-8973772 50 1.50e-04 CTAGTCCGCG CGGCCGTG TAGTCCTCTT chrII:10395529-10395609 41 1.50e-04 AGAAAAACTT CGGCCGTG TAGTCCTCTC chrII:4791431-4791511 49 1.50e-04 ACTCGGCCGC CGGCCGTG TACTCCTCTC chrIV:6631977-6632057 30 1.50e-04 TTTCTTCGGT CGGCCGTG GGTCGCGAAT chrII:15089575-15089655 44 1.50e-04 CTAGGCCACG CGGCCGTG TAGTCCTCCT chrIV:11315042-11315122 45 1.50e-04 GAATTTCGTG CGGCCGTG GCTGAGTTTT chrIII:5190348-5190428 46 1.50e-04 CTGTAGTTCT CGGCCGTG TACTCCTCTC chrX:9347696-9347776 41 1.83e-04 TGTCTTGTGA CGGCCACG AGACTATCTC chrIII:11286271-11286351 7 1.83e-04 GCCCCG CGGCCACG GCCCCCACGC chrIV:16995574-16995654 40 1.83e-04 TCCTCTTCCA CGGCCACG CGGCCCCCAC chrI:5281819-5281899 24 1.83e-04 ACGAATTTCT CGGCCACG GCCATCAGTT chrIV:4712601-4712681 31 1.83e-04 CTCGGCCACC CGGCCACG AAAACTCGGC chrI:9080098-9080178 41 1.83e-04 TGATGTTTTT CGGCCACG GCCACCGCAA chrI:11222148-11222228 39 1.83e-04 ACCTAGTCCA CGGCCACG CGGCCACCGA chrIII:4999030-4999110 22 1.83e-04 GGAGAATCCT CGGCCACG GCCACCAGAA chrV:6433679-6433759 52 2.05e-04 TTCGGAGACT AGGCCGCG GAGAAAGTGT chrII:7879495-7879575 36 2.05e-04 AATGGAAACC AGGCCGCG TGCCGGAGGC chrV:14546047-14546127 53 2.05e-04 CAAGGATTCT AGGCCGCG AAGCTTGACA chrIII:5853367-5853447 51 2.05e-04 GGTATTTGTT AGGCCGCG CTCTCTTAGC chrII:9931146-9931226 66 2.56e-04 ATTTTGGCGG TGGACGAG GAATTCT chrII:4603188-4603268 45 2.56e-04 ACACACGAGG TGGACGAG AAAACCCTCG chrII:10714392-10714472 10 2.56e-04 AATAATTAA TGGACGAG GTTTTGAAGA chrI:1271057-1271137 47 2.56e-04 AAACCCGCCC TGGACGAG GCGGGCCCCC chrIV:11592972-11593052 32 2.80e-04 TGCTAGTCCG CGGCCATG ACTAATCAGA chrI:14756445-14756525 31 2.80e-04 ACCTCGGTCA CGGCCATG CCACTTTTTT chrV:2603176-2603256 38 2.80e-04 TCCTCGTCCA CGGCCATG CGAAATGCGC chrIII:4343298-4343378 18 3.06e-04 ACACGGCCGA TGGACTAG GAACACACTG chrIII:11112887-11112967 29 3.06e-04 CTCGTGCGGG AGGCCGTG CATgaaaaca chrIII:8829363-8829443 49 3.06e-04 TACACGGCGG TGGACTAG TATTCCCCAT chrII:7537766-7537846 35 3.06e-04 ATATGGCCGC TGGACTAG TATTTGTACG chrI:3636652-3636732 22 3.66e-04 TGGGAAACCT AGGCCACG GCCATCGAGA chrV:156216-156296 35 3.66e-04 AAAGTTTCCT AGGCCACG CGACCGTGTA chrIII:8850799-8850879 59 3.66e-04 TGGAAATTCT AGGCCACG GATAACTATT chrI:1034364-1034444 29 3.66e-04 GCGGGTTTCT AGGCCACG GCCACCGAGG chrI:3176575-3176655 28 3.66e-04 GGAGAAAGTT AGGCCACG GCCACCACGG chrIII:12457005-12457085 48 3.92e-04 AGGTGGCTGG CGGACTAG TCTTGTCGGA chrI:5118944-5119024 6 3.92e-04 AACTG CGGACTAG TTCATCAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKMG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3379239-3379319 1.2e-05 54_[+1]_18 chrII:9968500-9968580 1.2e-05 22_[+1]_50 chrIII:5308391-5308471 1.2e-05 64_[+1]_8 chrIII:5603774-5603854 1.2e-05 14_[+1]_58 chrIII:11290710-11290790 1.2e-05 24_[+1]_48 chrIII:10064303-10064383 1.2e-05 13_[+1]_59 chrI:6760291-6760371 1.2e-05 27_[+1]_45 chrIV:6887858-6887938 1.2e-05 27_[+1]_45 chrIII:12673515-12673595 1.2e-05 50_[+1]_22 chrI:13835182-13835262 2.2e-05 26_[+1]_46 chrIII:5068954-5069034 2.2e-05 21_[+1]_51 chrI:13470413-13470493 2.2e-05 53_[+1]_19 chrIV:1347120-1347200 2.2e-05 25_[+1]_47 chrII:6383317-6383397 2.2e-05 38_[+1]_34 chrII:3482367-3482447 2.2e-05 6_[+1]_66 chrV:16022769-16022849 2.2e-05 41_[+1]_31 chrV:20090846-20090926 2.2e-05 26_[+1]_46 chrIV:4042416-4042496 2.2e-05 28_[+1]_44 chrIII:5803104-5803184 2.2e-05 14_[+1]_58 chrX:7569845-7569925 3.6e-05 [+1]_72 chrIV:13289504-13289584 3.6e-05 28_[+1]_44 chrV:2127158-2127238 3.6e-05 38_[+1]_34 chrIII:4930419-4930499 3.6e-05 15_[+1]_57 chrV:9536660-9536740 3.6e-05 58_[+1]_14 chrV:7465713-7465793 3.6e-05 13_[+1]_59 chrIII:4196738-4196818 3.6e-05 15_[+1]_57 chrII:10200900-10200980 3.6e-05 48_[+1]_24 chrII:2752705-2752785 3.6e-05 45_[+1]_27 chrV:11644298-11644378 3.6e-05 44_[+1]_28 chrX:4255003-4255083 3.6e-05 23_[+1]_49 chrIII:7858705-7858785 3.6e-05 68_[+1]_4 chrIII:4912481-4912561 3.6e-05 53_[+1]_19 chrIV:7816560-7816640 3.6e-05 29_[+1]_43 chrIV:16415769-16415849 3.6e-05 21_[+1]_51 chrIII:8529067-8529147 3.6e-05 24_[+1]_48 chrIII:7199003-7199083 3.6e-05 13_[+1]_59 chrV:7084906-7084986 3.6e-05 7_[+1]_65 chrI:5659133-5659213 3.6e-05 11_[+1]_61 chrV:6107623-6107703 3.6e-05 46_[+1]_26 chrX:16376141-16376221 3.6e-05 29_[+1]_43 chrIII:13439549-13439629 3.6e-05 36_[+1]_36 chrV:20424939-20425019 3.6e-05 34_[+1]_38 chrI:9393800-9393880 3.6e-05 20_[+1]_52 chrI:636775-636855 3.6e-05 29_[+1]_43 chrIII:5959204-5959284 3.6e-05 17_[+1]_55 chrII:2451162-2451242 4.6e-05 53_[+1]_19 chrX:13585018-13585098 4.6e-05 7_[+1]_65 chrIII:5871915-5871995 4.6e-05 28_[+1]_44 chrII:6097614-6097694 4.6e-05 27_[+1]_45 chrIII:10651886-10651966 5.8e-05 60_[+1]_12 chrX:9917517-9917597 5.8e-05 10_[+1]_62 chrI:4247559-4247639 6.7e-05 47_[+1]_25 chrX:4853175-4853255 6.7e-05 24_[+1]_48 chrIV:8019935-8020015 6.7e-05 5_[+1]_67 chrII:7397638-7397718 6.7e-05 11_[+1]_61 chrII:14857106-14857186 7.9e-05 9_[+1]_63 chrII:476169-476249 9.1e-05 54_[+1]_18 chrX:11693265-11693345 9.1e-05 21_[+1]_51 chrI:10161957-10162037 9.1e-05 42_[+1]_30 chrX:7798482-7798562 9.1e-05 40_[+1]_32 chrIII:5047384-5047464 9.1e-05 64_[+1]_8 chrV:11029474-11029554 0.00011 30_[+1]_42 chrIV:1687259-1687339 0.00013 13_[+1]_59 chrIV:8973692-8973772 0.00015 49_[+1]_23 chrII:10395529-10395609 0.00015 40_[+1]_32 chrII:4791431-4791511 0.00015 48_[+1]_24 chrIV:6631977-6632057 0.00015 29_[+1]_43 chrII:15089575-15089655 0.00015 43_[+1]_29 chrIV:11315042-11315122 0.00015 44_[+1]_28 chrIII:5190348-5190428 0.00015 45_[+1]_27 chrX:9347696-9347776 0.00018 40_[+1]_32 chrIII:11286271-11286351 0.00018 6_[+1]_66 chrIV:16995574-16995654 0.00018 39_[+1]_33 chrI:5281819-5281899 0.00018 23_[+1]_49 chrIV:4712601-4712681 0.00018 30_[+1]_42 chrI:9080098-9080178 0.00018 40_[+1]_32 chrI:11222148-11222228 0.00018 38_[+1]_34 chrIII:4999030-4999110 0.00018 21_[+1]_51 chrV:6433679-6433759 0.00021 51_[+1]_21 chrII:7879495-7879575 0.00021 35_[+1]_37 chrV:14546047-14546127 0.00021 52_[+1]_20 chrIII:5853367-5853447 0.00021 50_[+1]_22 chrII:9931146-9931226 0.00026 65_[+1]_7 chrII:4603188-4603268 0.00026 44_[+1]_28 chrII:10714392-10714472 0.00026 9_[+1]_63 chrI:1271057-1271137 0.00026 46_[+1]_26 chrIV:11592972-11593052 0.00028 31_[+1]_41 chrI:14756445-14756525 0.00028 30_[+1]_42 chrV:2603176-2603256 0.00028 37_[+1]_35 chrIII:4343298-4343378 0.00031 17_[+1]_55 chrIII:11112887-11112967 0.00031 28_[+1]_44 chrIII:8829363-8829443 0.00031 48_[+1]_24 chrII:7537766-7537846 0.00031 34_[+1]_38 chrI:3636652-3636732 0.00037 21_[+1]_51 chrV:156216-156296 0.00037 34_[+1]_38 chrIII:8850799-8850879 0.00037 58_[+1]_14 chrI:1034364-1034444 0.00037 28_[+1]_44 chrI:3176575-3176655 0.00037 27_[+1]_45 chrIII:12457005-12457085 0.00039 47_[+1]_25 chrI:5118944-5119024 0.00039 5_[+1]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKMG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGGCCKMG width=8 seqs=100 chrX:3379239-3379319 ( 55) TGGCCGAG 1 chrII:9968500-9968580 ( 23) TGGCCGAG 1 chrIII:5308391-5308471 ( 65) TGGCCGAG 1 chrIII:5603774-5603854 ( 15) TGGCCGAG 1 chrIII:11290710-11290790 ( 25) TGGCCGAG 1 chrIII:10064303-10064383 ( 14) TGGCCGAG 1 chrI:6760291-6760371 ( 28) TGGCCGAG 1 chrIV:6887858-6887938 ( 28) TGGCCGAG 1 chrIII:12673515-12673595 ( 51) TGGCCGAG 1 chrI:13835182-13835262 ( 27) TGGCCGCG 1 chrIII:5068954-5069034 ( 22) TGGCCGCG 1 chrI:13470413-13470493 ( 54) TGGCCGCG 1 chrIV:1347120-1347200 ( 26) TGGCCGCG 1 chrII:6383317-6383397 ( 39) TGGCCGCG 1 chrII:3482367-3482447 ( 7) TGGCCGCG 1 chrV:16022769-16022849 ( 42) TGGCCGCG 1 chrV:20090846-20090926 ( 27) TGGCCGCG 1 chrIV:4042416-4042496 ( 29) TGGCCGCG 1 chrIII:5803104-5803184 ( 15) TGGCCGCG 1 chrX:7569845-7569925 ( 1) TGGCCTAG 1 chrIV:13289504-13289584 ( 29) TGGCCTAG 1 chrV:2127158-2127238 ( 39) TGGCCTAG 1 chrIII:4930419-4930499 ( 16) TGGCCTAG 1 chrV:9536660-9536740 ( 59) TGGCCTAG 1 chrV:7465713-7465793 ( 14) TGGCCTAG 1 chrIII:4196738-4196818 ( 16) TGGCCTAG 1 chrII:10200900-10200980 ( 49) TGGCCTAG 1 chrII:2752705-2752785 ( 46) TGGCCTAG 1 chrV:11644298-11644378 ( 45) TGGCCTAG 1 chrX:4255003-4255083 ( 24) TGGCCTAG 1 chrIII:7858705-7858785 ( 69) TGGCCTAG 1 chrIII:4912481-4912561 ( 54) TGGCCTAG 1 chrIV:7816560-7816640 ( 30) TGGCCTAG 1 chrIV:16415769-16415849 ( 22) TGGCCTAG 1 chrIII:8529067-8529147 ( 25) TGGCCTAG 1 chrIII:7199003-7199083 ( 14) TGGCCTAG 1 chrV:7084906-7084986 ( 8) TGGCCTAG 1 chrI:5659133-5659213 ( 12) TGGCCTAG 1 chrV:6107623-6107703 ( 47) TGGCCTAG 1 chrX:16376141-16376221 ( 30) TGGCCTAG 1 chrIII:13439549-13439629 ( 37) TGGCCTAG 1 chrV:20424939-20425019 ( 35) TGGCCTAG 1 chrI:9393800-9393880 ( 21) TGGCCTAG 1 chrI:636775-636855 ( 30) TGGCCTAG 1 chrIII:5959204-5959284 ( 18) TGGCCTAG 1 chrII:2451162-2451242 ( 54) CGGCCGAG 1 chrX:13585018-13585098 ( 8) CGGCCGAG 1 chrIII:5871915-5871995 ( 29) CGGCCGAG 1 chrII:6097614-6097694 ( 28) CGGCCGAG 1 chrIII:10651886-10651966 ( 61) TGGCCTCG 1 chrX:9917517-9917597 ( 11) TGGCCTCG 1 chrI:4247559-4247639 ( 48) CGGCCGCG 1 chrX:4853175-4853255 ( 25) CGGCCGCG 1 chrIV:8019935-8020015 ( 6) CGGCCGCG 1 chrII:7397638-7397718 ( 12) CGGCCGCG 1 chrII:14857106-14857186 ( 10) CGGCCTAG 1 chrII:476169-476249 ( 55) TGGCCGTG 1 chrX:11693265-11693345 ( 22) TGGCCGTG 1 chrI:10161957-10162037 ( 43) TGGCCGTG 1 chrX:7798482-7798562 ( 41) TGGCCGTG 1 chrIII:5047384-5047464 ( 65) TGGCCGTG 1 chrV:11029474-11029554 ( 31) CGGCCTCG 1 chrIV:1687259-1687339 ( 14) TGGCCACG 1 chrIV:8973692-8973772 ( 50) CGGCCGTG 1 chrII:10395529-10395609 ( 41) CGGCCGTG 1 chrII:4791431-4791511 ( 49) CGGCCGTG 1 chrIV:6631977-6632057 ( 30) CGGCCGTG 1 chrII:15089575-15089655 ( 44) CGGCCGTG 1 chrIV:11315042-11315122 ( 45) CGGCCGTG 1 chrIII:5190348-5190428 ( 46) CGGCCGTG 1 chrX:9347696-9347776 ( 41) CGGCCACG 1 chrIII:11286271-11286351 ( 7) CGGCCACG 1 chrIV:16995574-16995654 ( 40) CGGCCACG 1 chrI:5281819-5281899 ( 24) CGGCCACG 1 chrIV:4712601-4712681 ( 31) CGGCCACG 1 chrI:9080098-9080178 ( 41) CGGCCACG 1 chrI:11222148-11222228 ( 39) CGGCCACG 1 chrIII:4999030-4999110 ( 22) CGGCCACG 1 chrV:6433679-6433759 ( 52) AGGCCGCG 1 chrII:7879495-7879575 ( 36) AGGCCGCG 1 chrV:14546047-14546127 ( 53) AGGCCGCG 1 chrIII:5853367-5853447 ( 51) AGGCCGCG 1 chrII:9931146-9931226 ( 66) TGGACGAG 1 chrII:4603188-4603268 ( 45) TGGACGAG 1 chrII:10714392-10714472 ( 10) TGGACGAG 1 chrI:1271057-1271137 ( 47) TGGACGAG 1 chrIV:11592972-11593052 ( 32) CGGCCATG 1 chrI:14756445-14756525 ( 31) CGGCCATG 1 chrV:2603176-2603256 ( 38) CGGCCATG 1 chrIII:4343298-4343378 ( 18) TGGACTAG 1 chrIII:11112887-11112967 ( 29) AGGCCGTG 1 chrIII:8829363-8829443 ( 49) TGGACTAG 1 chrII:7537766-7537846 ( 35) TGGACTAG 1 chrI:3636652-3636732 ( 22) AGGCCACG 1 chrV:156216-156296 ( 35) AGGCCACG 1 chrIII:8850799-8850879 ( 59) AGGCCACG 1 chrI:1034364-1034444 ( 29) AGGCCACG 1 chrI:3176575-3176655 ( 28) AGGCCACG 1 chrIII:12457005-12457085 ( 48) CGGACTAG 1 chrI:5118944-5119024 ( 6) CGGACTAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKMG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.64104 E= 2.2e-074 -139 36 -1329 116 -1329 -1329 209 -1329 -1329 -1329 209 -1329 -154 196 -1329 -1329 -1329 209 -1329 -1329 -62 -1329 103 38 90 58 -1329 -74 -1329 -1329 209 -1329 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKMG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 2.2e-074 0.100000 0.300000 0.000000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.090000 0.910000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.170000 0.000000 0.480000 0.350000 0.490000 0.350000 0.000000 0.160000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKMG MEME-1 regular expression -------------------------------------------------------------------------------- [TC]GGCC[GT][AC]G -------------------------------------------------------------------------------- Time 5.50 secs. ******************************************************************************** ******************************************************************************** MOTIF CTMGGCCA MEME-2 width = 8 sites = 48 llr = 432 E-value = 2.8e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :24::1:8 pos.-specific C a:6::9a: probability G :::aa::3 matrix T :8:::::: bits 2.1 * * * 1.9 * ** * 1.7 * ** * 1.5 * **** Relative 1.3 * ***** Entropy 1.0 ******** (13.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCGGCCA consensus AA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14127471-14127551 48 1.16e-05 CAACCTCCTC CTCGGCCA CCGCGCAACG chrV:12649786-12649866 37 1.16e-05 ACAATAAACA CTCGGCCA CCTCGCTCTA chrIII:8529067-8529147 45 1.16e-05 TTCTCTTTTA CTCGGCCA TGGCATACAT chrII:14857106-14857186 31 1.16e-05 TCGCACACTT CTCGGCCA ttttttctat chrI:15013994-15014074 12 1.16e-05 ATTTCGCGCG CTCGGCCA GAGGACGAGT chrIII:7088068-7088148 44 1.16e-05 AGGCGAATTT CTCGGCCA CCGCCTGGGG chrIV:8019935-8020015 23 1.16e-05 GCTGAGATTT CTCGGCCA CAGTATCGCA chrIV:4712601-4712681 21 1.16e-05 GGAGAAAATC CTCGGCCA CCCGGCCACG chrII:6097614-6097694 60 1.16e-05 GAGGGCATTC CTCGGCCA TATTACGATA chrV:20090846-20090926 58 1.16e-05 CAATTCTTTT CTCGGCCA TCTTCCTCCA chrIII:12673515-12673595 66 1.16e-05 GAGACCCCGA CTCGGCCA GGCAAGt chrV:18981150-18981230 38 2.46e-05 TCAGAGTTTC CTAGGCCA CCGCCGGTGT chrII:5511918-5511998 8 2.46e-05 ATACTTT CTAGGCCA CCATTTAAAT chrX:13585018-13585098 32 2.46e-05 CGCGCACCTG CTAGGCCA CGTTTTGTTT chrIII:5722015-5722095 40 2.46e-05 GCGGAGGTTT CTAGGCCA CCGGCTGTGT chrI:4247559-4247639 38 2.46e-05 TAGTTACTTC CTAGGCCA CGCGGCCGCG chrIII:5603774-5603854 43 2.46e-05 GACGAGACAT CTAGGCCA TCGATGGTTT chrX:9917517-9917597 40 2.46e-05 TGAGAGACAA CTAGGCCA CGGCCACAGG chrII:2752705-2752785 64 2.46e-05 CAGTGGAAAC CTAGGCCA CTGAAGGCG chrI:5659133-5659213 40 2.46e-05 TTGTCGGTTC CTAGGCCA CCACCTCGTT chrV:16022769-16022849 65 2.46e-05 AGTGACGCCG CTAGGCCA TTTGGCGA chrII:15089575-15089655 34 2.46e-05 CATTTGGTTC CTAGGCCA CGCGGCCGTG chrI:5118944-5119024 26 2.46e-05 CATCAGAAAA CTAGGCCA TTTTTTCACA chrIV:9777703-9777783 27 2.46e-05 ATGGAGTTTT CTAGGCCA CATGAACACA chrI:8511442-8511522 15 2.46e-05 ACGGAGAAAG CTAGGCCA TAAGTGGGAT chrII:4791431-4791511 40 3.51e-05 TAACATCCGA CTCGGCCG CCGGCCGTGT chrIII:4912481-4912561 46 3.51e-05 CATTCGGATT CTCGGCCG TGGCCTAGAA chrII:5649604-5649684 68 3.51e-05 ATTCTAGTCC CTCGGCCG CCAAA chrV:7084906-7084986 24 3.51e-05 AGAAACCAAC CTCGGCCG CACTGCGCCG chrIII:4930419-4930499 63 4.64e-05 TAGCCGCGGC CACGGCCA TGAGGTCATA chrII:7879495-7879575 54 4.64e-05 TGCCGGAGGC CACGGCCA TGGTTCTTTA chrIII:7199003-7199083 42 4.64e-05 TGTGCGCGGC CACGGCCA CTGTTGGCGG chrV:15082463-15082543 40 5.81e-05 TTGTCGGATT CTAGGCCG CATGCGCAGA chrI:13835182-13835262 47 7.08e-05 CGCCATTTTC CAAGGCCA CCGGGGCTTA chrIII:4343298-4343378 9 8.10e-05 GAGGAGTA CACGGCCG ATGGACTAGG chrIV:13289504-13289584 43 8.10e-05 CTAGAATCTG CACGGCCG CGCGCGCGTG chrI:13470413-13470493 26 8.10e-05 GAGAGGACTA CACGGCCG GTGGCCTTGG chrIV:16415769-16415849 12 8.10e-05 GAGAGGAGTA CACGGCCG AGTGGCCTAG chrII:5819841-5819921 12 8.10e-05 TCGTGTTGTT CACGGCCG AAGTTTTTCA chrI:636775-636855 54 8.10e-05 CCTCCTAGTC CACGGCCG CGCACGATTT chrIII:5803104-5803184 36 8.10e-05 GCCTAGTTTT CACGGCCG AGAAATGTCA chrIV:3803421-3803501 61 9.41e-05 GTGTACTCCT CTCGGACA AGGGATTAAT chrV:156216-156296 58 9.41e-05 GTGTACTCCT CTCGGACA AACAAACAAA chrIII:10064303-10064383 56 9.41e-05 GTGTACTCCA CTCGGACA ACATTTTCTT chrI:14756445-14756525 23 1.19e-04 CAGGTGAAAC CTCGGTCA CGGCCATGCC chrX:7798482-7798562 62 1.19e-04 GAGGGGGAAA CTCGGTCA TGTCGCCCGT chrV:2603176-2603256 30 1.32e-04 CCCGCACTTC CTCGTCCA CGGCCATGCG chrI:11222148-11222228 31 2.01e-04 TACACGAAAC CTAGTCCA CGGCCACGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14127471-14127551 1.2e-05 47_[+2]_25 chrV:12649786-12649866 1.2e-05 36_[+2]_36 chrIII:8529067-8529147 1.2e-05 44_[+2]_28 chrII:14857106-14857186 1.2e-05 30_[+2]_42 chrI:15013994-15014074 1.2e-05 11_[+2]_61 chrIII:7088068-7088148 1.2e-05 43_[+2]_29 chrIV:8019935-8020015 1.2e-05 22_[+2]_50 chrIV:4712601-4712681 1.2e-05 20_[+2]_52 chrII:6097614-6097694 1.2e-05 59_[+2]_13 chrV:20090846-20090926 1.2e-05 57_[+2]_15 chrIII:12673515-12673595 1.2e-05 65_[+2]_7 chrV:18981150-18981230 2.5e-05 37_[+2]_35 chrII:5511918-5511998 2.5e-05 7_[+2]_65 chrX:13585018-13585098 2.5e-05 31_[+2]_41 chrIII:5722015-5722095 2.5e-05 39_[+2]_33 chrI:4247559-4247639 2.5e-05 37_[+2]_35 chrIII:5603774-5603854 2.5e-05 42_[+2]_30 chrX:9917517-9917597 2.5e-05 39_[+2]_33 chrII:2752705-2752785 2.5e-05 63_[+2]_9 chrI:5659133-5659213 2.5e-05 39_[+2]_33 chrV:16022769-16022849 2.5e-05 64_[+2]_8 chrII:15089575-15089655 2.5e-05 33_[+2]_39 chrI:5118944-5119024 2.5e-05 25_[+2]_47 chrIV:9777703-9777783 2.5e-05 26_[+2]_46 chrI:8511442-8511522 2.5e-05 14_[+2]_58 chrII:4791431-4791511 3.5e-05 39_[+2]_33 chrIII:4912481-4912561 3.5e-05 45_[+2]_27 chrII:5649604-5649684 3.5e-05 67_[+2]_5 chrV:7084906-7084986 3.5e-05 23_[+2]_49 chrIII:4930419-4930499 4.6e-05 62_[+2]_10 chrII:7879495-7879575 4.6e-05 53_[+2]_19 chrIII:7199003-7199083 4.6e-05 41_[+2]_31 chrV:15082463-15082543 5.8e-05 39_[+2]_33 chrI:13835182-13835262 7.1e-05 46_[+2]_26 chrIII:4343298-4343378 8.1e-05 8_[+2]_64 chrIV:13289504-13289584 8.1e-05 42_[+2]_30 chrI:13470413-13470493 8.1e-05 25_[+2]_47 chrIV:16415769-16415849 8.1e-05 11_[+2]_61 chrII:5819841-5819921 8.1e-05 11_[+2]_61 chrI:636775-636855 8.1e-05 53_[+2]_19 chrIII:5803104-5803184 8.1e-05 35_[+2]_37 chrIV:3803421-3803501 9.4e-05 60_[+2]_12 chrV:156216-156296 9.4e-05 57_[+2]_15 chrIII:10064303-10064383 9.4e-05 55_[+2]_17 chrI:14756445-14756525 0.00012 22_[+2]_50 chrX:7798482-7798562 0.00012 61_[+2]_11 chrV:2603176-2603256 0.00013 29_[+2]_43 chrI:11222148-11222228 0.0002 30_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTMGGCCA width=8 seqs=48 chrX:14127471-14127551 ( 48) CTCGGCCA 1 chrV:12649786-12649866 ( 37) CTCGGCCA 1 chrIII:8529067-8529147 ( 45) CTCGGCCA 1 chrII:14857106-14857186 ( 31) CTCGGCCA 1 chrI:15013994-15014074 ( 12) CTCGGCCA 1 chrIII:7088068-7088148 ( 44) CTCGGCCA 1 chrIV:8019935-8020015 ( 23) CTCGGCCA 1 chrIV:4712601-4712681 ( 21) CTCGGCCA 1 chrII:6097614-6097694 ( 60) CTCGGCCA 1 chrV:20090846-20090926 ( 58) CTCGGCCA 1 chrIII:12673515-12673595 ( 66) CTCGGCCA 1 chrV:18981150-18981230 ( 38) CTAGGCCA 1 chrII:5511918-5511998 ( 8) CTAGGCCA 1 chrX:13585018-13585098 ( 32) CTAGGCCA 1 chrIII:5722015-5722095 ( 40) CTAGGCCA 1 chrI:4247559-4247639 ( 38) CTAGGCCA 1 chrIII:5603774-5603854 ( 43) CTAGGCCA 1 chrX:9917517-9917597 ( 40) CTAGGCCA 1 chrII:2752705-2752785 ( 64) CTAGGCCA 1 chrI:5659133-5659213 ( 40) CTAGGCCA 1 chrV:16022769-16022849 ( 65) CTAGGCCA 1 chrII:15089575-15089655 ( 34) CTAGGCCA 1 chrI:5118944-5119024 ( 26) CTAGGCCA 1 chrIV:9777703-9777783 ( 27) CTAGGCCA 1 chrI:8511442-8511522 ( 15) CTAGGCCA 1 chrII:4791431-4791511 ( 40) CTCGGCCG 1 chrIII:4912481-4912561 ( 46) CTCGGCCG 1 chrII:5649604-5649684 ( 68) CTCGGCCG 1 chrV:7084906-7084986 ( 24) CTCGGCCG 1 chrIII:4930419-4930499 ( 63) CACGGCCA 1 chrII:7879495-7879575 ( 54) CACGGCCA 1 chrIII:7199003-7199083 ( 42) CACGGCCA 1 chrV:15082463-15082543 ( 40) CTAGGCCG 1 chrI:13835182-13835262 ( 47) CAAGGCCA 1 chrIII:4343298-4343378 ( 9) CACGGCCG 1 chrIV:13289504-13289584 ( 43) CACGGCCG 1 chrI:13470413-13470493 ( 26) CACGGCCG 1 chrIV:16415769-16415849 ( 12) CACGGCCG 1 chrII:5819841-5819921 ( 12) CACGGCCG 1 chrI:636775-636855 ( 54) CACGGCCG 1 chrIII:5803104-5803184 ( 36) CACGGCCG 1 chrIV:3803421-3803501 ( 61) CTCGGACA 1 chrV:156216-156296 ( 58) CTCGGACA 1 chrIII:10064303-10064383 ( 56) CTCGGACA 1 chrI:14756445-14756525 ( 23) CTCGGTCA 1 chrX:7798482-7798562 ( 62) CTCGGTCA 1 chrV:2603176-2603256 ( 30) CTCGTCCA 1 chrI:11222148-11222228 ( 31) CTAGTCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.66841 E= 2.8e-029 -1223 209 -1223 -1223 -19 -1223 -1223 152 43 146 -1223 -1223 -1223 -1223 209 -1223 -1223 -1223 202 -268 -207 193 -1223 -268 -1223 209 -1223 -1223 152 -1223 9 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 2.8e-029 0.000000 1.000000 0.000000 0.000000 0.229167 0.000000 0.000000 0.770833 0.354167 0.645833 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.958333 0.041667 0.062500 0.895833 0.000000 0.041667 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 regular expression -------------------------------------------------------------------------------- C[TA][CA]GGCC[AG] -------------------------------------------------------------------------------- Time 9.03 secs. ******************************************************************************** ******************************************************************************** MOTIF DCGCGCDC MEME-3 width = 8 sites = 27 llr = 238 E-value = 1.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif DCGCGCDC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4:::::2: pos.-specific C 1a:a:a1a probability G 3:a:a:2: matrix T 2:::::4: bits 2.1 ***** * 1.9 ***** * 1.7 ***** * 1.5 ***** * Relative 1.3 ***** * Entropy 1.0 ***** * (12.7 bits) 0.8 ***** * 0.6 ***** * 0.4 ***** * 0.2 ***** * 0.0 -------- Multilevel ACGCGCTC consensus G A sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCGCGCDC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:5606904-5606984 55 1.16e-05 TACTGTTTTT ACGCGCTC CGAAGGGACA chrII:6734824-6734904 57 1.16e-05 AGAAAAGCAA ACGCGCTC CATTGTTACA chrIV:11592972-11593052 56 1.16e-05 CAGAGTGAAA ACGCGCTC CAATATCTAG chrX:4255003-4255083 4 1.16e-05 GAG ACGCGCTC TCCACACAAC chrI:853277-853357 61 1.16e-05 TCCGCTGCAA ACGCGCTC CACTGGACAC chrV:19496536-19496616 12 2.21e-05 AGATGCGCGA GCGCGCTC GCGCGATGCT chrV:9536660-9536740 8 2.21e-05 taaaggc gcgcgcTC TCAAACTTCA chrII:66427-66507 24 2.21e-05 CTTCCCGCGT GCGCGCTC ACTCTTCCGC chrI:2487855-2487935 34 2.21e-05 GTGTCAGCAA GCGCGCTC CAATGATTAT chrIII:5803104-5803184 63 2.21e-05 ACATGTTTTG GCGCGCTC TTCGGCGAAT chrIV:6631977-6632057 10 4.41e-05 GATTTGAAC ACGCGCGC TTTTTCTTCG chrV:11644298-11644378 11 4.41e-05 AGGTTTTGGT ACGCGCGC ACGTGCGCTC chrIV:4042416-4042496 13 4.41e-05 AATTTCAAAC TCGCGCTC TTTTCTCGTG chrII:15218109-15218189 53 6.47e-05 CTCCGCGCTT GCGCGCGC CTCCGAGAAA chrX:13585018-13585098 21 6.47e-05 CCGAGGTTTC ACGCGCAC CTGCTAGGCC chrIII:8700732-8700812 45 6.47e-05 AAGTTCAATA GCGCGCGC TTGTGGAAAG chrI:9087243-9087323 50 7.48e-05 GCTCGTTTCC GCGCGCAC TTTTCGCGTC chrII:8927413-8927493 29 8.50e-05 CGTTCAGCAG ACGCGCCC CATTGGACAT chrX:3824573-3824653 40 8.50e-05 GCTGCTTTCT ACGCGCCC CGCGCCCTCG chrI:11664892-11664972 55 1.05e-04 GATCCAGTGC TCGCGCGC GAGAGCAAAC chrI:14945786-14945866 53 1.27e-04 CTTTAGGCGC TCGCGCAC GCGACAGTAC chrIII:13119722-13119802 53 1.27e-04 CGCCCAATTC TCGCGCAC TCTGCTGCAG chrIII:11290710-11290790 53 1.37e-04 TAGTCCCGGG TCGCGCCC GCGAATTCTT chrI:2385157-2385237 66 1.37e-04 TTTGCGTTTT TCGCGCCC AGCGACA chrV:156216-156296 8 1.46e-04 TGAACAC CCGCGCGC AAAGCGCTTA chrII:4791431-4791511 15 1.56e-04 TTTTGAACAA CCGCGCAC TGTGGCCTAA chrI:3982960-3983040 63 1.56e-04 CCGCTTTCTT CCGCGCAC TGTTTCGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCGCGCDC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:5606904-5606984 1.2e-05 54_[+3]_18 chrII:6734824-6734904 1.2e-05 56_[+3]_16 chrIV:11592972-11593052 1.2e-05 55_[+3]_17 chrX:4255003-4255083 1.2e-05 3_[+3]_69 chrI:853277-853357 1.2e-05 60_[+3]_12 chrV:19496536-19496616 2.2e-05 11_[+3]_61 chrV:9536660-9536740 2.2e-05 7_[+3]_65 chrII:66427-66507 2.2e-05 23_[+3]_49 chrI:2487855-2487935 2.2e-05 33_[+3]_39 chrIII:5803104-5803184 2.2e-05 62_[+3]_10 chrIV:6631977-6632057 4.4e-05 9_[+3]_63 chrV:11644298-11644378 4.4e-05 10_[+3]_62 chrIV:4042416-4042496 4.4e-05 12_[+3]_60 chrII:15218109-15218189 6.5e-05 52_[+3]_20 chrX:13585018-13585098 6.5e-05 20_[+3]_52 chrIII:8700732-8700812 6.5e-05 44_[+3]_28 chrI:9087243-9087323 7.5e-05 49_[+3]_23 chrII:8927413-8927493 8.5e-05 28_[+3]_44 chrX:3824573-3824653 8.5e-05 39_[+3]_33 chrI:11664892-11664972 0.0001 54_[+3]_18 chrI:14945786-14945866 0.00013 52_[+3]_20 chrIII:13119722-13119802 0.00013 52_[+3]_20 chrIII:11290710-11290790 0.00014 52_[+3]_20 chrI:2385157-2385237 0.00014 65_[+3]_7 chrV:156216-156296 0.00015 7_[+3]_65 chrII:4791431-4791511 0.00016 14_[+3]_58 chrI:3982960-3983040 0.00016 62_[+3]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCGCGCDC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DCGCGCDC width=8 seqs=27 chrI:5606904-5606984 ( 55) ACGCGCTC 1 chrII:6734824-6734904 ( 57) ACGCGCTC 1 chrIV:11592972-11593052 ( 56) ACGCGCTC 1 chrX:4255003-4255083 ( 4) ACGCGCTC 1 chrI:853277-853357 ( 61) ACGCGCTC 1 chrV:19496536-19496616 ( 12) GCGCGCTC 1 chrV:9536660-9536740 ( 8) GCGCGCTC 1 chrII:66427-66507 ( 24) GCGCGCTC 1 chrI:2487855-2487935 ( 34) GCGCGCTC 1 chrIII:5803104-5803184 ( 63) GCGCGCTC 1 chrIV:6631977-6632057 ( 10) ACGCGCGC 1 chrV:11644298-11644378 ( 11) ACGCGCGC 1 chrIV:4042416-4042496 ( 13) TCGCGCTC 1 chrII:15218109-15218189 ( 53) GCGCGCGC 1 chrX:13585018-13585098 ( 21) ACGCGCAC 1 chrIII:8700732-8700812 ( 45) GCGCGCGC 1 chrI:9087243-9087323 ( 50) GCGCGCAC 1 chrII:8927413-8927493 ( 29) ACGCGCCC 1 chrX:3824573-3824653 ( 40) ACGCGCCC 1 chrI:11664892-11664972 ( 55) TCGCGCGC 1 chrI:14945786-14945866 ( 53) TCGCGCAC 1 chrIII:13119722-13119802 ( 53) TCGCGCAC 1 chrIII:11290710-11290790 ( 53) TCGCGCCC 1 chrI:2385157-2385237 ( 66) TCGCGCCC 1 chrV:156216-156296 ( 8) CCGCGCGC 1 chrII:4791431-4791511 ( 15) CCGCGCAC 1 chrI:3982960-3983040 ( 63) CCGCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCGCGCDC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.3477 E= 1.3e-003 50 -108 33 -27 -1140 209 -1140 -1140 -1140 -1140 209 -1140 -1140 209 -1140 -1140 -1140 -1140 209 -1140 -1140 209 -1140 -1140 -24 -66 -8 60 -1140 209 -1140 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCGCGCDC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.3e-003 0.370370 0.111111 0.296296 0.222222 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.148148 0.222222 0.407407 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCGCGCDC MEME-3 regular expression -------------------------------------------------------------------------------- [AGT]CGCGC[TAG]C -------------------------------------------------------------------------------- Time 13.10 secs. ******************************************************************************** ******************************************************************************** MOTIF GARRAAAA MEME-4 width = 8 sites = 28 llr = 248 E-value = 1.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARRAAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a56aaa8 pos.-specific C ::1::::: probability G a:44:::: matrix T :::::::2 bits 2.1 * 1.9 ** *** 1.7 ** *** 1.5 ** *** Relative 1.3 ** **** Entropy 1.0 ** ***** (12.8 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAAAAAA consensus GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:1280255-1280335 31 1.99e-05 CTAATAATTT GAAAAAAA AAAAGAAAAT chrI:3176575-3176655 2 1.99e-05 T GAAAAAAA AGAAAATTGG chrII:8137458-8137538 19 1.99e-05 CAGATTCGCT GAAAAAAA ATGAAGTTGT chrIV:13487202-13487282 61 1.99e-05 CAAGATCTAC GAAAAAAA AGATCTACGA chrIII:5688325-5688405 29 3.78e-05 CCTGTGAAGA GAGAAAAA GATTGACGAA chrII:10395529-10395609 30 3.78e-05 AAGTGCGGAA GAGAAAAA CTTCGGCCGT chrIII:11112887-11112967 60 3.78e-05 aaaaataagc gagaaaaa aaacgcgaaa chrI:12806675-12806755 20 3.78e-05 AAAAAATAAA GAGAAAAA ACGAGTGTAA chrIII:12273732-12273812 52 3.78e-05 GGAGAGCGCA GAGAAAAA CAGGGTTGTG chrIII:5665445-5665525 10 3.78e-05 TCCGCTTTG GAGAAAAA GAAAGTTTGG chrIII:4986956-4987036 47 3.78e-05 TCGTCCGCGA GAGAAAAA AGCGCGGAAG chrV:1197383-1197463 61 5.56e-05 GTATCTTCTA GAAGAAAA TTTCAAAAAT chrIII:5689781-5689861 55 5.56e-05 TTCTaaaata gaagaaaa aataaactag chrIII:10811186-10811266 18 5.56e-05 TATTTTTCTC GAAGAAAA CAATACAACG chrI:2385157-2385237 6 5.56e-05 TCGGA GAAGAAAA TAGCGTTTGA chrIII:13439549-13439629 53 5.56e-05 AGTGGCCGTG GAAGAAAA AACAATACAT chrI:10469107-10469187 48 5.56e-05 GTATCTTCTA GAAGAAAA TTTCAAAAAT chrIV:4702190-4702270 20 5.56e-05 TATTTTTCTC GAAGAAAA CGATACAACG chrIII:5843119-5843199 51 5.56e-05 GGCGAAAAAA GAAGAAAA AGAAGACTAT chrX:7798482-7798562 22 7.17e-05 ATAATGCTAT GAGGAAAA TATGGAGGGT chrX:9874614-9874694 64 8.94e-05 AGGGCAAAGA GACAAAAA ACTACGTGG chrI:5106132-5106212 17 8.94e-05 CTCAGTCCTC GACAAAAA GGATGACTTG chrIII:11091813-11091893 14 8.94e-05 ACTGAAAAAT GACAAAAA TTAGGGTATT chrII:1500522-1500602 72 1.10e-04 AAAGTTCCTC GAAAAAAT A chrIII:5976543-5976623 10 1.10e-04 CAAAAAAGT GAAAAAAT GAGTGAGAGA chrII:6683822-6683902 14 1.28e-04 AGGGTGTGGT GAGAAAAT TGTCCGCAAC chrIV:4712601-4712681 12 1.28e-04 GCGGTGGTCG GAGAAAAT CCTCGGCCAC chrIII:5068954-5069034 47 1.62e-04 GTTTATGGCC GAAGAAAT GCACAGTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:1280255-1280335 2e-05 30_[+4]_42 chrI:3176575-3176655 2e-05 1_[+4]_71 chrII:8137458-8137538 2e-05 18_[+4]_54 chrIV:13487202-13487282 2e-05 60_[+4]_12 chrIII:5688325-5688405 3.8e-05 28_[+4]_44 chrII:10395529-10395609 3.8e-05 29_[+4]_43 chrIII:11112887-11112967 3.8e-05 59_[+4]_13 chrI:12806675-12806755 3.8e-05 19_[+4]_53 chrIII:12273732-12273812 3.8e-05 51_[+4]_21 chrIII:5665445-5665525 3.8e-05 9_[+4]_63 chrIII:4986956-4987036 3.8e-05 46_[+4]_26 chrV:1197383-1197463 5.6e-05 60_[+4]_12 chrIII:5689781-5689861 5.6e-05 54_[+4]_18 chrIII:10811186-10811266 5.6e-05 17_[+4]_55 chrI:2385157-2385237 5.6e-05 5_[+4]_67 chrIII:13439549-13439629 5.6e-05 52_[+4]_20 chrI:10469107-10469187 5.6e-05 47_[+4]_25 chrIV:4702190-4702270 5.6e-05 19_[+4]_53 chrIII:5843119-5843199 5.6e-05 50_[+4]_22 chrX:7798482-7798562 7.2e-05 21_[+4]_51 chrX:9874614-9874694 8.9e-05 63_[+4]_9 chrI:5106132-5106212 8.9e-05 16_[+4]_56 chrIII:11091813-11091893 8.9e-05 13_[+4]_59 chrII:1500522-1500602 0.00011 71_[+4]_1 chrIII:5976543-5976623 0.00011 9_[+4]_63 chrII:6683822-6683902 0.00013 13_[+4]_59 chrIV:4712601-4712681 0.00013 11_[+4]_61 chrIII:5068954-5069034 0.00016 46_[+4]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARRAAAA width=8 seqs=28 chrI:1280255-1280335 ( 31) GAAAAAAA 1 chrI:3176575-3176655 ( 2) GAAAAAAA 1 chrII:8137458-8137538 ( 19) GAAAAAAA 1 chrIV:13487202-13487282 ( 61) GAAAAAAA 1 chrIII:5688325-5688405 ( 29) GAGAAAAA 1 chrII:10395529-10395609 ( 30) GAGAAAAA 1 chrIII:11112887-11112967 ( 60) GAGAAAAA 1 chrI:12806675-12806755 ( 20) GAGAAAAA 1 chrIII:12273732-12273812 ( 52) GAGAAAAA 1 chrIII:5665445-5665525 ( 10) GAGAAAAA 1 chrIII:4986956-4987036 ( 47) GAGAAAAA 1 chrV:1197383-1197463 ( 61) GAAGAAAA 1 chrIII:5689781-5689861 ( 55) GAAGAAAA 1 chrIII:10811186-10811266 ( 18) GAAGAAAA 1 chrI:2385157-2385237 ( 6) GAAGAAAA 1 chrIII:13439549-13439629 ( 53) GAAGAAAA 1 chrI:10469107-10469187 ( 48) GAAGAAAA 1 chrIV:4702190-4702270 ( 20) GAAGAAAA 1 chrIII:5843119-5843199 ( 51) GAAGAAAA 1 chrX:7798482-7798562 ( 22) GAGGAAAA 1 chrX:9874614-9874694 ( 64) GACAAAAA 1 chrI:5106132-5106212 ( 17) GACAAAAA 1 chrIII:11091813-11091893 ( 14) GACAAAAA 1 chrII:1500522-1500602 ( 72) GAAAAAAT 1 chrIII:5976543-5976623 ( 10) GAAAAAAT 1 chrII:6683822-6683902 ( 14) GAGAAAAT 1 chrIV:4712601-4712681 ( 12) GAGAAAAT 1 chrIII:5068954-5069034 ( 47) GAAGAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5697 E= 1.4e-003 -1145 -1145 209 -1145 193 -1145 -1145 -1145 103 -113 60 -1145 129 -1145 60 -1145 193 -1145 -1145 -1145 193 -1145 -1145 -1145 193 -1145 -1145 -1145 165 -1145 -1145 -59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 1.4e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.535714 0.107143 0.357143 0.000000 0.642857 0.000000 0.357143 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.821429 0.000000 0.000000 0.178571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAAAA MEME-4 regular expression -------------------------------------------------------------------------------- GA[AG][AG]AAAA -------------------------------------------------------------------------------- Time 16.57 secs. ******************************************************************************** ******************************************************************************** MOTIF WTTYAAAW MEME-5 width = 8 sites = 65 llr = 483 E-value = 2.9e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTTYAAAW MEME-5 Description -------------------------------------------------------------------------------- Simplified A 4:::8aa5 pos.-specific C 1::6:::1 probability G 1:::2::: matrix T 4aa4:::4 bits 2.1 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 ** *** Entropy 1.0 ****** (10.7 bits) 0.8 ****** 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel ATTCAAAA consensus T TG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTYAAAW MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:6061666-6061746 71 4.20e-05 TTGGCGCGTA ATTCAAAA CT chrV:11029474-11029554 58 4.20e-05 TACGCGGGAA ATTCAAAT TCAAATGTAC chrIII:5827055-5827135 49 4.20e-05 GTCCAAAATT ATTCAAAT TCCCGGGCTC chrIII:5722015-5722095 6 4.20e-05 ATCGA ATTCAAAA TGTATTGATT chrI:4215780-4215860 66 4.20e-05 ATTGGCGCAT ATTCAAAA AATTTTA chrIII:7199003-7199083 62 4.20e-05 GTTGGCGGTA ATTCAAAA ATAATATTTT chrIII:11286271-11286351 39 4.20e-05 TTGCGCGGCA ATTCAAAT CATTGTAGCA chrV:7084906-7084986 64 4.20e-05 AAGGGCGGCA ATTCAAAA AAGAATAAC chrV:16022769-16022849 6 4.20e-05 CTCAT ATTCAAAA CTCGCGCCGA chrI:9393800-9393880 55 4.20e-05 AAGGGCACTA ATTCAAAA AAGTTTGTCT chrV:2603176-2603256 60 4.20e-05 ATGCGCGGGC ATTCAAAT TGGGAAAATC chrIII:5959204-5959284 56 4.20e-05 TTACCGCGTC ATTCAAAT AAAAAAGTGT chrV:1197383-1197463 69 8.49e-05 TAGAAGAAAA TTTCAAAA ATCA chrIII:11746875-11746955 3 8.49e-05 GG TTTCAAAT TTGAATTTCC chrI:1034364-1034444 2 8.49e-05 A TTTCAAAT CTCCCTCGCG chrI:7251587-7251667 20 8.49e-05 TTTTTTATAA TTTCAAAT AGCTTTAAAA chrI:10469107-10469187 56 8.49e-05 TAGAAGAAAA TTTCAAAA ATCAACGTGC chrIII:4862121-4862201 38 8.49e-05 GAATACCGAC TTTCAAAT AGCATAAAGC chrII:2451162-2451242 21 1.33e-04 TAAAATTTGA ATTTAAAA CTTTGGCGCC chrIII:5759133-5759213 60 1.33e-04 TTTGACATTT ATTTAAAT TGAGGGTTCT chrIII:5689781-5689861 37 1.33e-04 AACATGAATT ATTTAAAA TTCTaaaata chrII:5511918-5511998 18 1.33e-04 CTAGGCCACC ATTTAAAT TTTCAGGTCT chrIII:5068954-5069034 3 1.33e-04 GT ATTTAAAT AACCGCGGTT chrII:8927413-8927493 45 1.33e-04 CCCATTGGAC ATTTAAAT ATTTTGAGTT chrI:1280255-1280335 68 1.33e-04 ACACCACGGA ATTTAAAA TTTGG chrII:1134666-1134746 55 1.82e-04 TAGAAGAAAG TTTTAAAA ATCAACGTGC chrI:12806675-12806755 2 1.82e-04 A TTTTAAAT AAAAAATAAA chrII:1500522-1500602 41 1.82e-04 GTAATTGACA TTTTAAAA ATTGAAAAAT chrIV:12621621-12621701 18 1.82e-04 GCACGTTGAT TTTTAAAA TTTTCTTCTA chrI:8125504-8125584 36 1.82e-04 TCTTTATGTG TTTTAAAA CTTGTTTTAT chrI:14756445-14756525 56 1.82e-04 TTTGCGGGAA TTTTAAAT TGGAGTTTTT chrIII:9808293-9808373 40 1.82e-04 CATAAAATAT TTTTAAAA AACTTTATAT chrI:10161957-10162037 17 2.20e-04 AAAAAAATAT ATTCGAAT TCGAACATTT chrV:6433679-6433759 5 2.58e-04 ATGT TTTCGAAT TTCGAACATT chrII:7857696-7857776 9 2.58e-04 AGTTTTTT TTTCGAAA TATTCAATTA chrII:2454956-2455036 2 2.58e-04 A TTTCGAAA TATTGACTTT chrIV:9777703-9777783 69 2.58e-04 ACGGCGCGAA TTTCGAAA TAGA chrIII:5864461-5864541 66 2.58e-04 CTCATATATT TTTCGAAT AAATCAA chrV:2127158-2127238 1 3.01e-04 . ATTTGAAT TTTAGAGTTT chrIII:5308391-5308471 5 3.01e-04 CTCC ATTTGAAA TACCGCGCAT chrIII:5871915-5871995 65 3.01e-04 TGCGCGCTAA ATTTGAAT TTAATTTG chrIII:5499096-5499176 21 3.01e-04 AAAATTCTAA ATTTGAAT TTccgcgcaa chrII:10714392-10714472 67 3.01e-04 AAGCGCGGGG ATTTGAAT TTAGTT chrIV:16415769-16415849 47 3.01e-04 TTGCGCGGTT ATTTGAAT CAGAATTTTG chrIII:5190348-5190428 8 3.01e-04 TACATTT ATTTGAAT TTCGCGCGAA chrX:4255003-4255083 68 3.58e-04 CTGCACACAC ATTCAAAC ACACA chrIV:7816560-7816640 55 3.58e-04 TTGCGCGGAA GTTCAAAT TTTAATTAGC chrII:7397638-7397718 45 3.58e-04 TTGCGCGGAG GTTCAAAT CATAATCACA chrI:5659133-5659213 70 3.58e-04 ATTGGCGGTG GTTCAAAA AAT chrII:15089575-15089655 9 3.58e-04 TTAAATAT ATTCAAAC TCCCGCGCAT chrI:8511442-8511522 56 3.58e-04 ATTGGCGGGT GTTCAAAT AGTAGTTTTC chrIII:4986956-4987036 64 3.58e-04 AAGCGCGGAA GTTCAAAA CAAAAAAAA chrX:11693265-11693345 71 4.02e-04 CTGCTATTTT TTTTGAAT TA chrI:5281819-5281899 55 4.02e-04 TGCGCGCCAA TTTTGAAA TTTATAAGGA chrI:9080098-9080178 5 4.02e-04 TTAA TTTTGAAA GCGGATATCT chrV:19496536-19496616 30 4.58e-04 GCGCGATGCT CTTCAAAA AAACCGGACT chrV:9536660-9536740 21 4.58e-04 cgcTCTCAAA CTTCAAAA TAGGCAGTTG chrIII:8250447-8250527 42 4.58e-04 ACAAGTTCAA TTTCAAAC AGAGATTTGC chrIII:10856985-10857065 59 4.58e-04 TCCATGGTGA CTTCAAAA ACTTCAAGTT chrIV:4042416-4042496 5 4.58e-04 TCAA TTTCAAAC TCGCGCTCTT chrI:2710550-2710630 34 5.22e-04 TTTTGAGAAG GTTTAAAT GGATTTTGTG chrII:7072763-7072843 68 5.87e-04 TTATTCAAAG CTTTAAAA TAATA chrII:5594380-5594460 58 5.87e-04 AACAATGTTT CTTTAAAA AAACAATTGT chrII:5836541-5836621 11 5.87e-04 TAAATTGCCG TTTTAAAC ATTAAAAGAT chrI:5118944-5119024 62 5.87e-04 TTTCTCCATT TTTTAAAC AATTGTTTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTYAAAW MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6061666-6061746 4.2e-05 70_[+5]_2 chrV:11029474-11029554 4.2e-05 57_[+5]_15 chrIII:5827055-5827135 4.2e-05 48_[+5]_24 chrIII:5722015-5722095 4.2e-05 5_[+5]_67 chrI:4215780-4215860 4.2e-05 65_[+5]_7 chrIII:7199003-7199083 4.2e-05 61_[+5]_11 chrIII:11286271-11286351 4.2e-05 38_[+5]_34 chrV:7084906-7084986 4.2e-05 63_[+5]_9 chrV:16022769-16022849 4.2e-05 5_[+5]_67 chrI:9393800-9393880 4.2e-05 54_[+5]_18 chrV:2603176-2603256 4.2e-05 59_[+5]_13 chrIII:5959204-5959284 4.2e-05 55_[+5]_17 chrV:1197383-1197463 8.5e-05 68_[+5]_4 chrIII:11746875-11746955 8.5e-05 2_[+5]_70 chrI:1034364-1034444 8.5e-05 1_[+5]_71 chrI:7251587-7251667 8.5e-05 19_[+5]_53 chrI:10469107-10469187 8.5e-05 55_[+5]_17 chrIII:4862121-4862201 8.5e-05 37_[+5]_35 chrII:2451162-2451242 0.00013 20_[+5]_52 chrIII:5759133-5759213 0.00013 59_[+5]_13 chrIII:5689781-5689861 0.00013 36_[+5]_36 chrII:5511918-5511998 0.00013 17_[+5]_55 chrIII:5068954-5069034 0.00013 2_[+5]_70 chrII:8927413-8927493 0.00013 44_[+5]_28 chrI:1280255-1280335 0.00013 67_[+5]_5 chrII:1134666-1134746 0.00018 54_[+5]_18 chrI:12806675-12806755 0.00018 1_[+5]_71 chrII:1500522-1500602 0.00018 40_[+5]_32 chrIV:12621621-12621701 0.00018 17_[+5]_55 chrI:8125504-8125584 0.00018 35_[+5]_37 chrI:14756445-14756525 0.00018 55_[+5]_17 chrIII:9808293-9808373 0.00018 39_[+5]_33 chrI:10161957-10162037 0.00022 16_[+5]_56 chrV:6433679-6433759 0.00026 4_[+5]_68 chrII:7857696-7857776 0.00026 8_[+5]_64 chrII:2454956-2455036 0.00026 1_[+5]_71 chrIV:9777703-9777783 0.00026 68_[+5]_4 chrIII:5864461-5864541 0.00026 65_[+5]_7 chrV:2127158-2127238 0.0003 [+5]_72 chrIII:5308391-5308471 0.0003 4_[+5]_68 chrIII:5871915-5871995 0.0003 64_[+5]_8 chrIII:5499096-5499176 0.0003 20_[+5]_52 chrII:10714392-10714472 0.0003 66_[+5]_6 chrIV:16415769-16415849 0.0003 46_[+5]_26 chrIII:5190348-5190428 0.0003 7_[+5]_65 chrX:4255003-4255083 0.00036 67_[+5]_5 chrIV:7816560-7816640 0.00036 54_[+5]_18 chrII:7397638-7397718 0.00036 44_[+5]_28 chrI:5659133-5659213 0.00036 69_[+5]_3 chrII:15089575-15089655 0.00036 8_[+5]_64 chrI:8511442-8511522 0.00036 55_[+5]_17 chrIII:4986956-4987036 0.00036 63_[+5]_9 chrX:11693265-11693345 0.0004 70_[+5]_2 chrI:5281819-5281899 0.0004 54_[+5]_18 chrI:9080098-9080178 0.0004 4_[+5]_68 chrV:19496536-19496616 0.00046 29_[+5]_43 chrV:9536660-9536740 0.00046 20_[+5]_52 chrIII:8250447-8250527 0.00046 41_[+5]_31 chrIII:10856985-10857065 0.00046 58_[+5]_14 chrIV:4042416-4042496 0.00046 4_[+5]_68 chrI:2710550-2710630 0.00052 33_[+5]_39 chrII:7072763-7072843 0.00059 67_[+5]_5 chrII:5594380-5594460 0.00059 57_[+5]_15 chrII:5836541-5836621 0.00059 10_[+5]_62 chrI:5118944-5119024 0.00059 61_[+5]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTYAAAW MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTTYAAAW width=8 seqs=65 chrII:6061666-6061746 ( 71) ATTCAAAA 1 chrV:11029474-11029554 ( 58) ATTCAAAT 1 chrIII:5827055-5827135 ( 49) ATTCAAAT 1 chrIII:5722015-5722095 ( 6) ATTCAAAA 1 chrI:4215780-4215860 ( 66) ATTCAAAA 1 chrIII:7199003-7199083 ( 62) ATTCAAAA 1 chrIII:11286271-11286351 ( 39) ATTCAAAT 1 chrV:7084906-7084986 ( 64) ATTCAAAA 1 chrV:16022769-16022849 ( 6) ATTCAAAA 1 chrI:9393800-9393880 ( 55) ATTCAAAA 1 chrV:2603176-2603256 ( 60) ATTCAAAT 1 chrIII:5959204-5959284 ( 56) ATTCAAAT 1 chrV:1197383-1197463 ( 69) TTTCAAAA 1 chrIII:11746875-11746955 ( 3) TTTCAAAT 1 chrI:1034364-1034444 ( 2) TTTCAAAT 1 chrI:7251587-7251667 ( 20) TTTCAAAT 1 chrI:10469107-10469187 ( 56) TTTCAAAA 1 chrIII:4862121-4862201 ( 38) TTTCAAAT 1 chrII:2451162-2451242 ( 21) ATTTAAAA 1 chrIII:5759133-5759213 ( 60) ATTTAAAT 1 chrIII:5689781-5689861 ( 37) ATTTAAAA 1 chrII:5511918-5511998 ( 18) ATTTAAAT 1 chrIII:5068954-5069034 ( 3) ATTTAAAT 1 chrII:8927413-8927493 ( 45) ATTTAAAT 1 chrI:1280255-1280335 ( 68) ATTTAAAA 1 chrII:1134666-1134746 ( 55) TTTTAAAA 1 chrI:12806675-12806755 ( 2) TTTTAAAT 1 chrII:1500522-1500602 ( 41) TTTTAAAA 1 chrIV:12621621-12621701 ( 18) TTTTAAAA 1 chrI:8125504-8125584 ( 36) TTTTAAAA 1 chrI:14756445-14756525 ( 56) TTTTAAAT 1 chrIII:9808293-9808373 ( 40) TTTTAAAA 1 chrI:10161957-10162037 ( 17) ATTCGAAT 1 chrV:6433679-6433759 ( 5) TTTCGAAT 1 chrII:7857696-7857776 ( 9) TTTCGAAA 1 chrII:2454956-2455036 ( 2) TTTCGAAA 1 chrIV:9777703-9777783 ( 69) TTTCGAAA 1 chrIII:5864461-5864541 ( 66) TTTCGAAT 1 chrV:2127158-2127238 ( 1) ATTTGAAT 1 chrIII:5308391-5308471 ( 5) ATTTGAAA 1 chrIII:5871915-5871995 ( 65) ATTTGAAT 1 chrIII:5499096-5499176 ( 21) ATTTGAAT 1 chrII:10714392-10714472 ( 67) ATTTGAAT 1 chrIV:16415769-16415849 ( 47) ATTTGAAT 1 chrIII:5190348-5190428 ( 8) ATTTGAAT 1 chrX:4255003-4255083 ( 68) ATTCAAAC 1 chrIV:7816560-7816640 ( 55) GTTCAAAT 1 chrII:7397638-7397718 ( 45) GTTCAAAT 1 chrI:5659133-5659213 ( 70) GTTCAAAA 1 chrII:15089575-15089655 ( 9) ATTCAAAC 1 chrI:8511442-8511522 ( 56) GTTCAAAT 1 chrIII:4986956-4987036 ( 64) GTTCAAAA 1 chrX:11693265-11693345 ( 71) TTTTGAAT 1 chrI:5281819-5281899 ( 55) TTTTGAAA 1 chrI:9080098-9080178 ( 5) TTTTGAAA 1 chrV:19496536-19496616 ( 30) CTTCAAAA 1 chrV:9536660-9536740 ( 21) CTTCAAAA 1 chrIII:8250447-8250527 ( 42) TTTCAAAC 1 chrIII:10856985-10857065 ( 59) CTTCAAAA 1 chrIV:4042416-4042496 ( 5) TTTCAAAC 1 chrI:2710550-2710630 ( 34) GTTTAAAT 1 chrII:7072763-7072843 ( 68) CTTTAAAA 1 chrII:5594380-5594460 ( 58) CTTTAAAA 1 chrII:5836541-5836621 ( 11) TTTTAAAC 1 chrI:5118944-5119024 ( 62) TTTTAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTYAAAW MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.88203 E= 2.9e-009 77 -161 -135 52 -1267 -1267 -1267 190 -1267 -1267 -1267 190 -1267 124 -1267 73 152 -1267 6 -1267 193 -1267 -1267 -1267 193 -1267 -1267 -1267 82 -134 -1267 73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTYAAAW MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 2.9e-009 0.446154 0.076923 0.092308 0.384615 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.553846 0.000000 0.446154 0.753846 0.000000 0.246154 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.461538 0.092308 0.000000 0.446154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTYAAAW MEME-5 regular expression -------------------------------------------------------------------------------- [AT]TT[CT][AG]AA[AT] -------------------------------------------------------------------------------- Time 19.92 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4986956-4987036 1.87e-04 46_[+4(3.78e-05)]_26 chrIII:5959204-5959284 2.22e-03 17_[+1(3.56e-05)]_30_[+5(4.20e-05)]_\ 17 chrIII:4862121-4862201 1.85e-01 37_[+5(8.49e-05)]_35 chrIII:6013157-6013237 9.74e-01 80 chrIII:5190348-5190428 8.26e-05 43_[+2(3.51e-05)]_29 chrIV:13487202-13487282 1.43e-01 60_[+4(1.99e-05)]_12 chrI:6958875-6958955 4.80e-01 80 chrIII:5853367-5853447 6.09e-03 80 chrIII:4999030-4999110 2.85e-03 19_[+2(1.16e-05)]_53 chrII:11398979-11399059 1.22e-01 80 chrIII:5564994-5565074 6.90e-01 80 chrIII:11093624-11093704 5.11e-01 80 chrIV:10811580-10811660 8.63e-01 80 chrIII:5803104-5803184 3.93e-05 14_[+1(2.22e-05)]_1_[+1(3.56e-05)]_\ 6_[+1(4.58e-05)]_17_[+3(2.21e-05)]_10 chrI:9087243-9087323 4.81e-02 49_[+3(7.48e-05)]_23 chrI:636775-636855 1.58e-06 29_[+1(3.56e-05)]_18_[+1(6.69e-05)]_\ 17 chrI:13418685-13418765 6.01e-01 80 chrIII:5102805-5102885 2.19e-01 80 chrIII:5047384-5047464 2.91e-02 64_[+1(9.06e-05)]_8 chrI:1271057-1271137 1.26e-01 80 chrIII:5843119-5843199 9.17e-02 50_[+4(5.56e-05)]_22 chrI:2487855-2487935 1.04e-02 33_[+3(2.21e-05)]_39 chrIII:12673515-12673595 1.25e-04 50_[+1(1.17e-05)]_7_[+2(1.16e-05)]_\ 7 chrI:2996031-2996111 7.14e-01 80 chrV:2603176-2603256 2.55e-05 35_[+2(4.64e-05)]_16_[+5(4.20e-05)]_\ 13 chrIII:5710908-5710988 1.15e-01 80 chrIII:5843880-5843960 1.90e-01 80 chrIII:5958317-5958397 6.74e-01 80 chrIII:3322487-3322567 7.57e-01 80 chrI:11222148-11222228 4.22e-03 36_[+2(4.64e-05)]_36 chrII:8137458-8137538 1.28e-01 18_[+4(1.99e-05)]_54 chrIV:4702190-4702270 2.52e-01 19_[+4(5.56e-05)]_53 chrIII:4905504-4905584 9.26e-01 80 chrX:3824573-3824653 1.76e-01 39_[+3(8.50e-05)]_33 chrX:7798482-7798562 3.47e-04 21_[+4(7.17e-05)]_11_[+1(9.06e-05)]_\ 32 chrV:9422868-9422948 6.31e-02 80 chrI:8511442-8511522 1.00e-02 14_[+2(2.46e-05)]_58 chrIV:6747808-6747888 4.55e-01 80 chrIV:4042416-4042496 1.32e-04 12_[+3(4.41e-05)]_8_[+1(2.22e-05)]_\ 44 chrIII:13119722-13119802 3.17e-01 80 chrIV:11315042-11315122 2.53e-01 80 chrV:15065507-15065587 4.54e-01 80 chrIII:5108909-5108989 4.00e-01 80 chrIII:1540292-1540372 2.58e-01 80 chrV:16553127-16553207 1.71e-01 80 chrI:10469107-10469187 1.15e-02 47_[+4(5.56e-05)]_[+5(8.49e-05)]_17 chrI:9393800-9393880 9.04e-04 20_[+1(3.56e-05)]_26_[+5(4.20e-05)]_\ 18 chrV:20424939-20425019 8.36e-02 34_[+1(3.56e-05)]_38 chrII:484580-484660 2.99e-01 80 chrV:20090846-20090926 3.37e-04 26_[+1(2.22e-05)]_23_[+2(1.16e-05)]_\ 15 chrI:9080098-9080178 1.39e-03 44_[+2(4.64e-05)]_28 chrII:6097614-6097694 9.44e-04 27_[+1(4.58e-05)]_24_[+2(1.16e-05)]_\ 13 chrIII:13439549-13439629 8.04e-03 36_[+1(3.56e-05)]_[+1(9.06e-05)]_\ [+4(5.56e-05)]_20 chrI:3982960-3983040 2.62e-01 80 chrIV:1687259-1687339 2.35e-02 80 chrIV:4712601-4712681 1.42e-04 20_[+2(1.16e-05)]_14_[+2(1.16e-05)]_\ 30 chrI:122438-122518 4.35e-01 80 chrIII:5864461-5864541 6.64e-02 80 chrIV:9777703-9777783 5.14e-03 26_[+2(2.46e-05)]_46 chrII:5819841-5819921 8.30e-03 11_[+2(8.10e-05)]_61 chrI:5281819-5281899 1.22e-04 21_[+2(1.16e-05)]_51 chrV:14546047-14546127 2.34e-03 50_[+2(5.81e-05)]_22 chrIII:5129458-5129538 7.51e-01 80 chrI:3176575-3176655 2.90e-04 1_[+4(1.99e-05)]_22_[+2(4.64e-05)]_\ 41 chrX:16376141-16376221 5.01e-02 29_[+1(3.56e-05)]_43 chrIII:10856985-10857065 5.07e-01 80 chrIV:6887858-6887938 3.99e-03 27_[+1(1.17e-05)]_45 chrII:10136902-10136982 2.01e-01 80 chrI:5118944-5119024 1.69e-03 25_[+2(2.46e-05)]_47 chrII:15089575-15089655 1.63e-04 33_[+2(2.46e-05)]_39 chrI:6760291-6760371 2.84e-02 27_[+1(1.17e-05)]_45 chrX:12142693-12142773 2.78e-01 80 chrV:16022769-16022849 2.01e-06 5_[+5(4.20e-05)]_20_[+1(2.22e-05)]_\ [+1(2.22e-05)]_15_[+2(2.46e-05)]_8 chrI:13421176-13421256 7.93e-01 80 chrV:6107623-6107703 3.14e-02 46_[+1(3.56e-05)]_26 chrI:5659133-5659213 8.08e-05 11_[+1(3.56e-05)]_20_[+2(2.46e-05)]_\ 33 chrIII:8700732-8700812 6.24e-02 44_[+3(6.47e-05)]_28 chrI:933476-933556 9.99e-01 80 chrII:7397638-7397718 2.15e-04 11_[+1(6.69e-05)]_[+1(7.86e-05)]_53 chrIV:16995574-16995654 2.77e-03 37_[+2(4.64e-05)]_35 chrV:7084906-7084986 8.09e-06 7_[+1(3.56e-05)]_8_[+2(3.51e-05)]_\ 32_[+5(4.20e-05)]_9 chrX:1853721-1853801 1.41e-01 80 chrI:9430691-9430771 9.70e-01 80 chrIII:11286271-11286351 1.01e-03 38_[+5(4.20e-05)]_34 chrIV:8019935-8020015 6.82e-05 3_[+2(3.51e-05)]_11_[+2(1.16e-05)]_\ 50 chrI:7251587-7251667 2.06e-01 19_[+5(8.49e-05)]_53 chrIII:7088068-7088148 1.24e-02 26_[+2(4.64e-05)]_9_[+2(1.16e-05)]_\ 29 chrI:15013994-15014074 8.62e-05 11_[+2(1.16e-05)]_21_[+2(2.46e-05)]_\ 32 chrII:14857106-14857186 1.16e-03 9_[+1(7.86e-05)]_13_[+2(1.16e-05)]_\ 42 chrIII:7199003-7199083 7.16e-06 13_[+1(3.56e-05)]_3_[+5(4.20e-05)]_\ 9_[+2(4.64e-05)]_12_[+5(4.20e-05)]_11 chrII:3482367-3482447 1.81e-03 6_[+1(2.22e-05)]_66 chrIV:13533269-13533349 7.73e-01 80 chrIII:5976543-5976623 1.84e-01 80 chrIV:17108363-17108443 9.70e-01 80 chrIII:10064303-10064383 1.78e-03 13_[+1(1.17e-05)]_7_[+1(3.56e-05)]_\ 19_[+2(9.41e-05)]_17 chrIII:9808293-9808373 2.88e-01 80 chrII:6383317-6383397 4.85e-03 20_[+1(3.56e-05)]_10_[+1(2.22e-05)]_\ 34 chrIII:8529067-8529147 8.19e-04 24_[+1(3.56e-05)]_12_[+2(1.16e-05)]_\ 28 chrX:9113958-9114038 1.70e-01 80 chrI:1280255-1280335 1.18e-02 30_[+4(1.99e-05)]_42 chrV:1427341-1427421 9.74e-01 80 chrIII:3476346-3476426 2.95e-01 80 chrI:13422635-13422715 7.10e-01 80 chrII:5649604-5649684 1.02e-03 67_[+2(3.51e-05)]_5 chrII:4622674-4622754 3.09e-01 80 chrI:2385157-2385237 1.30e-03 5_[+4(5.56e-05)]_67 chrI:9402967-9403047 5.92e-01 80 chrI:10161957-10162037 3.14e-04 42_[+1(9.06e-05)]_30 chrI:14756445-14756525 7.21e-04 28_[+2(4.64e-05)]_44 chrIV:16415769-16415849 3.03e-04 13_[+1(4.58e-05)]_[+1(3.56e-05)]_51 chrIII:10811186-10811266 2.52e-01 17_[+4(5.56e-05)]_55 chrIV:1347120-1347200 2.67e-03 25_[+1(2.22e-05)]_47 chrII:7537766-7537846 1.24e-02 80 chrIV:7816560-7816640 7.08e-03 29_[+1(3.56e-05)]_43 chrI:13470413-13470493 1.21e-04 25_[+2(8.10e-05)]_20_[+1(2.22e-05)]_\ 19 chrI:4215780-4215860 1.05e-02 65_[+5(4.20e-05)]_7 chrX:9347696-9347776 1.44e-01 80 chrV:4798511-4798591 3.74e-01 80 chrV:12649786-12649866 5.53e-03 36_[+2(1.16e-05)]_36 chrI:1034364-1034444 1.40e-04 1_[+5(8.49e-05)]_17_[+2(2.46e-05)]_\ 46 chrI:8125504-8125584 4.05e-01 80 chrI:2144202-2144282 1.00e+00 80 chrIII:4912481-4912561 1.99e-03 45_[+2(3.51e-05)]_[+1(3.56e-05)]_19 chrI:2710550-2710630 6.74e-01 80 chrII:5836541-5836621 3.02e-01 80 chrV:11933367-11933447 2.66e-01 80 chrIV:10085838-10085918 6.29e-01 80 chrV:15082463-15082543 7.61e-02 39_[+2(5.81e-05)]_33 chrIII:8850799-8850879 6.60e-03 56_[+2(2.46e-05)]_16 chrI:11664892-11664972 2.59e-02 80 chrI:853277-853357 5.70e-02 60_[+3(1.16e-05)]_12 chrII:10714392-10714472 2.53e-03 80 chrIII:3499998-3500078 3.45e-01 80 chrIII:11290710-11290790 2.59e-04 24_[+1(1.17e-05)]_48 chrII:8927413-8927493 2.34e-03 28_[+3(8.50e-05)]_44 chrIII:5136346-5136426 5.86e-01 80 chrII:66427-66507 9.02e-02 23_[+3(2.21e-05)]_49 chrII:11220971-11221051 9.54e-01 80 chrX:11474321-11474401 9.83e-01 80 chrIII:7858705-7858785 9.91e-03 68_[+1(3.56e-05)]_4 chrX:4255003-4255083 1.27e-04 3_[+3(1.16e-05)]_12_[+1(3.56e-05)]_\ 49 chrIV:4399542-4399622 7.61e-01 80 chrII:9230643-9230723 1.70e-01 80 chrIII:8144731-8144811 1.29e-01 80 chrV:11644298-11644378 4.48e-03 10_[+3(4.41e-05)]_26_[+1(3.56e-05)]_\ 28 chrIII:5499096-5499176 1.03e-01 80 chrIII:13187904-13187984 1.82e-01 80 chrIV:12621621-12621701 2.24e-01 80 chrII:1500522-1500602 4.29e-02 80 chrIV:6631977-6632057 1.35e-04 9_[+3(4.41e-05)]_63 chrIII:5665445-5665525 7.38e-02 9_[+4(3.78e-05)]_63 chrII:2752705-2752785 4.45e-04 45_[+1(3.56e-05)]_10_[+2(2.46e-05)]_\ 9 chrX:4853175-4853255 1.29e-02 24_[+1(6.69e-05)]_48 chrIV:1067511-1067591 1.44e-01 80 chrX:9917517-9917597 3.56e-03 10_[+1(5.78e-05)]_21_[+2(2.46e-05)]_\ 33 chrII:10200900-10200980 2.23e-02 48_[+1(3.56e-05)]_24 chrIII:5426255-5426335 5.31e-01 80 chrIII:5871915-5871995 8.52e-06 28_[+1(4.58e-05)]_44 chrV:13625814-13625894 9.98e-01 80 chrIII:11091813-11091893 2.27e-01 13_[+4(8.94e-05)]_59 chrIII:5938142-5938222 4.36e-01 80 chrII:7879495-7879575 9.36e-03 53_[+2(4.64e-05)]_19 chrI:10095338-10095418 8.47e-01 80 chrIII:12457005-12457085 8.93e-02 80 chrX:11693265-11693345 2.69e-03 21_[+1(9.06e-05)]_51 chrIII:5603774-5603854 2.04e-04 14_[+1(1.17e-05)]_20_[+2(2.46e-05)]_\ 30 chrIII:13658184-13658264 3.48e-01 80 chrII:4791431-4791511 2.97e-05 39_[+2(3.51e-05)]_16_[+2(9.41e-05)]_\ 9 chrIII:5308391-5308471 1.00e-03 33_[+1(3.56e-05)]_23_[+1(1.17e-05)]_\ 8 chrIII:13423562-13423642 9.26e-01 80 chrIII:5068954-5069034 3.66e-05 21_[+1(2.22e-05)]_51 chrIII:12273732-12273812 9.20e-02 51_[+4(3.78e-05)]_21 chrII:9968500-9968580 3.57e-03 22_[+1(1.17e-05)]_50 chrI:4247559-4247639 8.41e-05 37_[+2(2.46e-05)]_2_[+1(6.69e-05)]_\ 25 chrIV:11592972-11593052 2.07e-04 55_[+3(1.16e-05)]_17 chrII:6734824-6734904 4.57e-03 56_[+3(1.16e-05)]_16 chrI:5106132-5106212 3.39e-02 16_[+4(8.94e-05)]_56 chrII:5594380-5594460 1.40e-01 80 chrII:11221932-11222012 5.52e-01 80 chrIII:8250447-8250527 4.47e-02 80 chrI:14945786-14945866 2.52e-01 80 chrIII:5722015-5722095 1.32e-03 5_[+5(4.20e-05)]_26_[+2(2.46e-05)]_\ 33 chrX:13585018-13585098 6.59e-05 7_[+1(4.58e-05)]_5_[+3(6.47e-05)]_3_\ [+2(2.46e-05)]_41 chrIII:4196738-4196818 5.16e-02 15_[+1(3.56e-05)]_57 chrII:5511918-5511998 7.10e-03 7_[+2(2.46e-05)]_65 chrII:7343908-7343988 4.22e-01 80 chrV:7465713-7465793 3.05e-02 13_[+1(3.56e-05)]_59 chrII:476169-476249 3.40e-03 54_[+1(9.06e-05)]_18 chrV:156216-156296 2.18e-04 32_[+2(2.46e-05)]_17_[+2(9.41e-05)]_\ 15 chrIII:8829363-8829443 1.05e-01 80 chrIII:5835303-5835383 6.07e-02 80 chrI:5606904-5606984 1.42e-02 54_[+3(1.16e-05)]_18 chrX:14127471-14127551 2.83e-02 47_[+2(1.16e-05)]_25 chrIII:931564-931644 5.85e-01 80 chrI:12806675-12806755 2.36e-02 19_[+4(3.78e-05)]_53 chrV:18981150-18981230 6.10e-02 37_[+2(2.46e-05)]_35 chrI:15052715-15052795 2.00e-01 80 chrIII:13474637-13474717 2.98e-01 80 chrV:10672717-10672797 6.35e-01 80 chrI:13835182-13835262 3.20e-04 26_[+1(2.22e-05)]_12_[+2(7.08e-05)]_\ 26 chrIII:5827055-5827135 1.92e-02 48_[+5(4.20e-05)]_24 chrIII:9868278-9868358 1.02e-01 80 chrV:20832735-20832815 4.21e-01 80 chrII:2378636-2378716 8.78e-01 80 chrII:1134666-1134746 1.07e-01 80 chrIII:11112887-11112967 4.73e-03 61_[+4(1.99e-05)]_11 chrI:4967575-4967655 5.30e-01 80 chrII:2454956-2455036 9.59e-02 80 chrI:3636652-3636732 1.15e-03 19_[+2(2.46e-05)]_53 chrV:11029474-11029554 2.31e-03 57_[+5(4.20e-05)]_15 chrV:9536660-9536740 3.25e-04 7_[+3(2.21e-05)]_43_[+1(3.56e-05)]_\ 14 chrII:7072763-7072843 5.62e-01 80 chrIII:5689781-5689861 1.53e-02 54_[+4(5.56e-05)]_18 chrIII:11746875-11746955 3.42e-02 2_[+5(8.49e-05)]_70 chrIV:11635789-11635869 9.09e-01 80 chrIII:4930419-4930499 1.44e-04 15_[+1(3.56e-05)]_39_[+2(4.64e-05)]_\ 10 chrII:10395529-10395609 4.05e-03 29_[+4(3.78e-05)]_43 chrV:19496536-19496616 1.60e-03 11_[+3(2.21e-05)]_61 chrII:7857696-7857776 5.22e-01 80 chrV:2127158-2127238 2.96e-03 38_[+1(3.56e-05)]_34 chrV:6433679-6433759 5.48e-04 49_[+2(5.81e-05)]_23 chrIII:5759133-5759213 4.54e-01 80 chrV:5614257-5614337 3.26e-01 80 chrIII:11947652-11947732 1.83e-01 80 chrIV:8973692-8973772 3.53e-03 80 chrI:3059196-3059276 1.54e-01 80 chrV:10526087-10526167 1.74e-02 80 chrII:4603188-4603268 1.03e-02 80 chrIV:3803421-3803501 6.44e-02 60_[+2(9.41e-05)]_12 chrX:3379239-3379319 5.00e-03 54_[+1(1.17e-05)]_18 chrIII:5688325-5688405 4.38e-02 28_[+4(3.78e-05)]_44 chrII:15218109-15218189 1.69e-01 52_[+3(6.47e-05)]_20 chrII:6683822-6683902 2.51e-01 80 chrIV:13289504-13289584 2.45e-06 28_[+1(3.56e-05)]_13_[+3(6.47e-05)]_\ 23 chrV:10178306-10178386 6.38e-01 80 chrIII:4343298-4343378 4.80e-04 8_[+2(8.10e-05)]_64 chrII:4955505-4955585 6.74e-01 80 chrI:6175157-6175237 7.14e-01 80 chrIII:10651886-10651966 1.68e-01 60_[+1(5.78e-05)]_12 chrIII:3540590-3540670 3.64e-01 80 chrI:1251565-1251645 9.08e-01 80 chrII:12042353-12042433 7.87e-01 80 chrI:6252896-6252976 9.00e-01 80 chrII:9931146-9931226 4.84e-02 80 chrX:9874614-9874694 1.98e-01 63_[+4(8.94e-05)]_9 chrII:2451162-2451242 3.49e-03 40_[+1(9.06e-05)]_5_[+1(4.58e-05)]_\ 19 chrV:1197383-1197463 1.40e-02 60_[+4(5.56e-05)]_[+5(8.49e-05)]_4 chrX:7569845-7569925 2.30e-02 [+1(3.56e-05)]_72 chrII:6061666-6061746 6.63e-03 70_[+5(4.20e-05)]_2 chrIV:14794405-14794485 7.54e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c26n02.farnam.hpc.yale.internal ********************************************************************************