******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/elt-4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:303441-303521 1.0000 80 chrV:20600833-20600913 1.0000 80 chrIII:11561796-11561876 1.0000 80 chrII:2850849-2850929 1.0000 80 chrII:14240090-14240170 1.0000 80 chrIII:7888160-7888240 1.0000 80 chrI:3356504-3356584 1.0000 80 chrIV:3618847-3618927 1.0000 80 chrV:194897-194977 1.0000 80 chrI:773010-773090 1.0000 80 chrII:14129517-14129597 1.0000 80 chrX:16383252-16383332 1.0000 80 chrII:8200250-8200330 1.0000 80 chrIV:3999833-3999913 1.0000 80 chrIV:4608834-4608914 1.0000 80 chrX:11711823-11711903 1.0000 80 chrIV:3731593-3731673 1.0000 80 chrII:10940670-10940750 1.0000 80 chrIV:8357398-8357478 1.0000 80 chrII:13152565-13152645 1.0000 80 chrIII:21389-21469 1.0000 80 chrX:1703234-1703314 1.0000 80 chrIV:3646642-3646722 1.0000 80 chrIII:2778786-2778866 1.0000 80 chrV:18663286-18663366 1.0000 80 chrI:11542801-11542881 1.0000 80 chrI:6037258-6037338 1.0000 80 chrIII:13564629-13564709 1.0000 80 chrV:20272406-20272486 1.0000 80 chrIII:12993241-12993321 1.0000 80 chrIII:7649128-7649208 1.0000 80 chrI:7202564-7202644 1.0000 80 chrX:14490585-14490665 1.0000 80 chrI:3274627-3274707 1.0000 80 chrIV:6735755-6735835 1.0000 80 chrII:13896429-13896509 1.0000 80 chrI:14373837-14373917 1.0000 80 chrIV:4077281-4077361 1.0000 80 chrI:1880037-1880117 1.0000 80 chrIV:3276566-3276646 1.0000 80 chrV:4790983-4791063 1.0000 80 chrV:19590948-19591028 1.0000 80 chrI:1004530-1004610 1.0000 80 chrI:1156702-1156782 1.0000 80 chrIV:3085956-3086036 1.0000 80 chrIII:3489708-3489788 1.0000 80 chrI:11032752-11032832 1.0000 80 chrV:3750232-3750312 1.0000 80 chrI:330462-330542 1.0000 80 chrI:5306060-5306140 1.0000 80 chrI:747063-747143 1.0000 80 chrX:13924075-13924155 1.0000 80 chrII:2828018-2828098 1.0000 80 chrX:13466980-13467060 1.0000 80 chrIV:566724-566804 1.0000 80 chrV:1504820-1504900 1.0000 80 chrIII:12909837-12909917 1.0000 80 chrIII:11843282-11843362 1.0000 80 chrV:17962606-17962686 1.0000 80 chrIV:13243827-13243907 1.0000 80 chrIV:9260970-9261050 1.0000 80 chrI:1780935-1781015 1.0000 80 chrII:4870100-4870180 1.0000 80 chrV:4151557-4151637 1.0000 80 chrV:12197957-12198037 1.0000 80 chrI:2381370-2381450 1.0000 80 chrIII:853582-853662 1.0000 80 chrI:1180669-1180749 1.0000 80 chrIII:2476297-2476377 1.0000 80 chrIV:13066145-13066225 1.0000 80 chrX:1453151-1453231 1.0000 80 chrIV:16333235-16333315 1.0000 80 chrII:13272140-13272220 1.0000 80 chrI:12340734-12340814 1.0000 80 chrIII:168580-168660 1.0000 80 chrV:5799705-5799785 1.0000 80 chrX:15594121-15594201 1.0000 80 chrV:189566-189646 1.0000 80 chrIII:11143099-11143179 1.0000 80 chrIII:11876360-11876440 1.0000 80 chrV:8050200-8050280 1.0000 80 chrI:5508840-5508920 1.0000 80 chrIII:11611825-11611905 1.0000 80 chrIII:2972750-2972830 1.0000 80 chrII:13451462-13451542 1.0000 80 chrII:2754744-2754824 1.0000 80 chrII:3045657-3045737 1.0000 80 chrIV:7925453-7925533 1.0000 80 chrII:13412858-13412938 1.0000 80 chrV:10561681-10561761 1.0000 80 chrI:1738989-1739069 1.0000 80 chrI:2781222-2781302 1.0000 80 chrII:1224692-1224772 1.0000 80 chrIV:11565228-11565308 1.0000 80 chrV:1465916-1465996 1.0000 80 chrV:15502983-15503063 1.0000 80 chrX:10336714-10336794 1.0000 80 chrV:10293866-10293946 1.0000 80 chrV:19042307-19042387 1.0000 80 chrII:304446-304526 1.0000 80 chrI:14267468-14267548 1.0000 80 chrI:2331946-2332026 1.0000 80 chrII:5640940-5641020 1.0000 80 chrIII:1439730-1439810 1.0000 80 chrII:12716126-12716206 1.0000 80 chrIII:10889003-10889083 1.0000 80 chrII:13316726-13316806 1.0000 80 chrI:840374-840454 1.0000 80 chrI:2803251-2803331 1.0000 80 chrIV:5221757-5221837 1.0000 80 chrV:17548774-17548854 1.0000 80 chrII:8201659-8201739 1.0000 80 chrV:9625737-9625817 1.0000 80 chrIII:8262763-8262843 1.0000 80 chrII:13325312-13325392 1.0000 80 chrIII:2476507-2476587 1.0000 80 chrIV:1054198-1054278 1.0000 80 chrIII:11704616-11704696 1.0000 80 chrIII:13240166-13240246 1.0000 80 chrIV:3476785-3476865 1.0000 80 chrI:2388662-2388742 1.0000 80 chrII:10707624-10707704 1.0000 80 chrV:14320905-14320985 1.0000 80 chrIII:13605000-13605080 1.0000 80 chrIV:4249710-4249790 1.0000 80 chrX:16652425-16652505 1.0000 80 chrIII:11340507-11340587 1.0000 80 chrIV:16868460-16868540 1.0000 80 chrIII:1937910-1937990 1.0000 80 chrIII:13780395-13780475 1.0000 80 chrIII:11722549-11722629 1.0000 80 chrIV:9563907-9563987 1.0000 80 chrIV:1769273-1769353 1.0000 80 chrIV:9048255-9048335 1.0000 80 chrIV:462213-462293 1.0000 80 chrV:2703076-2703156 1.0000 80 chrII:14100571-14100651 1.0000 80 chrV:18538502-18538582 1.0000 80 chrV:14240685-14240765 1.0000 80 chrII:4207739-4207819 1.0000 80 chrII:11566039-11566119 1.0000 80 chrV:1869508-1869588 1.0000 80 chrV:2185459-2185539 1.0000 80 chrI:11589188-11589268 1.0000 80 chrV:16377288-16377368 1.0000 80 chrX:1441741-1441821 1.0000 80 chrIII:11877417-11877497 1.0000 80 chrV:239565-239645 1.0000 80 chrV:12647822-12647902 1.0000 80 chrX:12086448-12086528 1.0000 80 chrII:2215810-2215890 1.0000 80 chrIV:12109202-12109282 1.0000 80 chrIII:13646011-13646091 1.0000 80 chrV:386454-386534 1.0000 80 chrX:11000847-11000927 1.0000 80 chrIII:11759142-11759222 1.0000 80 chrI:933476-933556 1.0000 80 chrV:16553037-16553117 1.0000 80 chrIII:11365048-11365128 1.0000 80 chrII:14096948-14097028 1.0000 80 chrIII:4280999-4281079 1.0000 80 chrX:12655597-12655677 1.0000 80 chrX:9233937-9234017 1.0000 80 chrX:10373809-10373889 1.0000 80 chrI:2254206-2254286 1.0000 80 chrIV:4686956-4687036 1.0000 80 chrIII:931566-931646 1.0000 80 chrII:10705516-10705596 1.0000 80 chrIII:3499975-3500055 1.0000 80 chrV:17952421-17952501 1.0000 80 chrV:12510084-12510164 1.0000 80 chrIII:10856973-10857053 1.0000 80 chrII:15040323-15040403 1.0000 80 chrI:11204669-11204749 1.0000 80 chrI:7711707-7711787 1.0000 80 chrIII:8801679-8801759 1.0000 80 chrIV:385229-385309 1.0000 80 chrII:11015998-11016078 1.0000 80 chrII:11329112-11329192 1.0000 80 chrI:803957-804037 1.0000 80 chrX:986580-986660 1.0000 80 chrII:8358611-8358691 1.0000 80 chrV:19555559-19555639 1.0000 80 chrX:5056375-5056455 1.0000 80 chrIII:11367461-11367541 1.0000 80 chrIII:11091828-11091908 1.0000 80 chrI:1415963-1416043 1.0000 80 chrIII:13615632-13615712 1.0000 80 chrIV:13023099-13023179 1.0000 80 chrV:14325050-14325130 1.0000 80 chrIV:2237347-2237427 1.0000 80 chrIII:4568715-4568795 1.0000 80 chrIV:4001608-4001688 1.0000 80 chrI:1669258-1669338 1.0000 80 chrIV:10217066-10217146 1.0000 80 chrII:3524825-3524905 1.0000 80 chrX:11473377-11473457 1.0000 80 chrIV:14095617-14095697 1.0000 80 chrI:13817566-13817646 1.0000 80 chrIV:2398484-2398564 1.0000 80 chrI:3399559-3399639 1.0000 80 chrII:13886583-13886663 1.0000 80 chrV:5284756-5284836 1.0000 80 chrIII:5334668-5334748 1.0000 80 chrIII:4951361-4951441 1.0000 80 chrV:11463028-11463108 1.0000 80 chrV:16593821-16593901 1.0000 80 chrX:2212522-2212602 1.0000 80 chrII:415890-415970 1.0000 80 chrIII:13780594-13780674 1.0000 80 chrX:7613445-7613525 1.0000 80 chrV:6615256-6615336 1.0000 80 chrIV:1745619-1745699 1.0000 80 chrV:9343996-9344076 1.0000 80 chrX:12636509-12636589 1.0000 80 chrIII:3476383-3476463 1.0000 80 chrII:11534650-11534730 1.0000 80 chrV:12024391-12024471 1.0000 80 chrV:4667145-4667225 1.0000 80 chrIII:2560950-2561030 1.0000 80 chrV:12780377-12780457 1.0000 80 chrII:1238042-1238122 1.0000 80 chrIII:5172650-5172730 1.0000 80 chrV:11075729-11075809 1.0000 80 chrI:14863604-14863684 1.0000 80 chrX:11477006-11477086 1.0000 80 chrI:384862-384942 1.0000 80 chrX:16966176-16966256 1.0000 80 chrIII:10461289-10461369 1.0000 80 chrX:489852-489932 1.0000 80 chrI:14130265-14130345 1.0000 80 chrIV:3686345-3686425 1.0000 80 chrV:4653395-4653475 1.0000 80 chrI:8259509-8259589 1.0000 80 chrII:8625537-8625617 1.0000 80 chrIV:9477688-9477768 1.0000 80 chrI:13421204-13421284 1.0000 80 chrIV:11474275-11474355 1.0000 80 chrII:5105243-5105323 1.0000 80 chrI:5807371-5807451 1.0000 80 chrI:7772599-7772679 1.0000 80 chrI:1823228-1823308 1.0000 80 chrIV:4264720-4264800 1.0000 80 chrII:10527696-10527776 1.0000 80 chrV:15873940-15874020 1.0000 80 chrII:12042392-12042472 1.0000 80 chrII:12175581-12175661 1.0000 80 chrX:13144461-13144541 1.0000 80 chrI:10409360-10409440 1.0000 80 chrX:1379574-1379654 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_elt-4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/elt-4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.219 C 0.281 G 0.276 T 0.225 Background letter frequencies (from file dataset with add-one prior applied): A 0.219 C 0.281 G 0.276 T 0.225 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KYTCCTGG MEME-1 width = 8 sites = 36 llr = 297 E-value = 5.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif KYTCCTGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::2::::: pos.-specific C 15:8a::: probability G 4::2::aa matrix T 558::a:: bits 2.2 * 2.0 * 1.8 **** 1.5 * **** Relative 1.3 * **** Entropy 1.1 ******* (11.9 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCCTGG consensus GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYTCCTGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:4653395-4653475 71 1.54e-05 TCTTCCTGGC TTTCCTGG TC chrX:12636509-12636589 17 1.54e-05 ATCTCCCTGG TTTCCTGG AAGTCCTTGT chrII:8358611-8358691 69 1.54e-05 GGCTCCGGCG TTTCCTGG TGCT chrII:11015998-11016078 37 1.54e-05 ggctccggcg tttcctgg ggctcctggT chrIV:12109202-12109282 6 1.54e-05 CGTCA TTTCCTGG TCTTCCTGGT chrV:10293866-10293946 42 1.54e-05 TTTTCCTGGA TTTCCTGG TTGCCCGGGT chrIII:12993241-12993321 63 1.54e-05 AGCTCCGTTC TTTCCTGG TGGTCCGTCT chrX:11711823-11711903 51 1.54e-05 TGGTCCGTCA TTTCCTGG TGCTCCTGGT chrX:16383252-16383332 25 1.54e-05 ACGTCCAGCC TTTCCTGG AATGCCAGGA chrX:11477006-11477086 20 3.47e-05 TGCGTCCATC TCTCCTGG CTCATAGACT chrX:9233937-9234017 43 3.47e-05 ACCTCCAGTC TCTCCTGG CTCTCCGACT chrV:8050200-8050280 2 3.47e-05 C TCTCCTGG TGGTCCTGGT chrIV:9260970-9261050 24 3.47e-05 TTCTCCCTGC TCTCCTGG TCTCCCGCAT chrII:13325312-13325392 68 5.36e-05 CATTCCAGGA GTTCCTGG ACCAC chrX:11000847-11000927 22 7.72e-05 ATCTCCTCTG GCTCCTGG CAATCCAACT chrIII:8262763-8262843 64 7.72e-05 TTGTCCATCA GCTCCTGG CTGTCCGTC chrV:4151557-4151637 11 7.72e-05 aggctcccag gctcctgg gctcctaggt chrI:747063-747143 71 7.72e-05 TCTAGATGGA GCTCCTGG CG chrII:13886583-13886663 40 1.27e-04 AAGGCGGCTA CTTCCTGG ATGCACTGGC chrV:12197957-12198037 19 1.27e-04 CTGACCATCT CTTCCTGG ATATCCTGGC chrIV:8357398-8357478 49 1.27e-04 AGTTCCCGGA TTACCTGG TGATGGTCCA chrV:14325050-14325130 68 1.46e-04 tggggcgggt tctgctgg agcag chrX:1441741-1441821 18 1.46e-04 GAAGCTCGAA TCTGCTGG CAGGCTGGGC chrIV:11565228-11565308 61 1.46e-04 TTGTGGAATA TCTGCTGG GCCAGAGGGA chrIII:13615632-13615712 18 1.88e-04 AGCGCCCATT CCTCCTGG GGCTCCGCCG chrII:4870100-4870180 47 1.88e-04 TTCTCCGTGT CCTCCTGG TGGTCCTGGT chrX:13466980-13467060 49 1.88e-04 TTGTCCTGGC CCTCCTGG CTGTCCTGGT chrI:7202564-7202644 36 1.88e-04 GGAGCCAGGT TCACCTGG ACGCCCTGGC chrII:10707624-10707704 2 2.07e-04 A GTTGCTGG ACCAGCTCAC chrI:2781222-2781302 43 2.07e-04 CGGGGGGTCC GTTGCTGG AGCTGTAGCT chrIII:7888160-7888240 28 2.07e-04 TGATTGCACA GTTGCTGG GGCCGAAGTT chrX:7613445-7613525 67 2.25e-04 GGTGACGACT GTACCTGG CCGACA chrII:2828018-2828098 59 2.25e-04 CCTTGGACCT GTACCTGG AGAGCCTCGA chrV:18663286-18663366 3 2.25e-04 TG GTACCTGG GTCTAGATAC chrII:8200250-8200330 55 2.48e-04 TGTAGCGGGA GCTGCTGG AGCAACTGGA chrIV:4264720-4264800 36 2.71e-04 ACCACCTGGA GCACCTGG AGATGCTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYTCCTGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:4653395-4653475 1.5e-05 70_[+1]_2 chrX:12636509-12636589 1.5e-05 16_[+1]_56 chrII:8358611-8358691 1.5e-05 68_[+1]_4 chrII:11015998-11016078 1.5e-05 36_[+1]_36 chrIV:12109202-12109282 1.5e-05 5_[+1]_67 chrV:10293866-10293946 1.5e-05 41_[+1]_31 chrIII:12993241-12993321 1.5e-05 62_[+1]_10 chrX:11711823-11711903 1.5e-05 50_[+1]_22 chrX:16383252-16383332 1.5e-05 24_[+1]_48 chrX:11477006-11477086 3.5e-05 19_[+1]_53 chrX:9233937-9234017 3.5e-05 42_[+1]_30 chrV:8050200-8050280 3.5e-05 1_[+1]_71 chrIV:9260970-9261050 3.5e-05 23_[+1]_49 chrII:13325312-13325392 5.4e-05 67_[+1]_5 chrX:11000847-11000927 7.7e-05 21_[+1]_51 chrIII:8262763-8262843 7.7e-05 63_[+1]_9 chrV:4151557-4151637 7.7e-05 10_[+1]_62 chrI:747063-747143 7.7e-05 70_[+1]_2 chrII:13886583-13886663 0.00013 39_[+1]_33 chrV:12197957-12198037 0.00013 18_[+1]_54 chrIV:8357398-8357478 0.00013 48_[+1]_24 chrV:14325050-14325130 0.00015 67_[+1]_5 chrX:1441741-1441821 0.00015 17_[+1]_55 chrIV:11565228-11565308 0.00015 60_[+1]_12 chrIII:13615632-13615712 0.00019 17_[+1]_55 chrII:4870100-4870180 0.00019 46_[+1]_26 chrX:13466980-13467060 0.00019 48_[+1]_24 chrI:7202564-7202644 0.00019 35_[+1]_37 chrII:10707624-10707704 0.00021 1_[+1]_71 chrI:2781222-2781302 0.00021 42_[+1]_30 chrIII:7888160-7888240 0.00021 27_[+1]_45 chrX:7613445-7613525 0.00023 66_[+1]_6 chrII:2828018-2828098 0.00023 58_[+1]_14 chrV:18663286-18663366 0.00023 2_[+1]_70 chrII:8200250-8200330 0.00025 54_[+1]_18 chrIV:4264720-4264800 0.00027 35_[+1]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYTCCTGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KYTCCTGG width=8 seqs=36 chrV:4653395-4653475 ( 71) TTTCCTGG 1 chrX:12636509-12636589 ( 17) TTTCCTGG 1 chrII:8358611-8358691 ( 69) TTTCCTGG 1 chrII:11015998-11016078 ( 37) TTTCCTGG 1 chrIV:12109202-12109282 ( 6) TTTCCTGG 1 chrV:10293866-10293946 ( 42) TTTCCTGG 1 chrIII:12993241-12993321 ( 63) TTTCCTGG 1 chrX:11711823-11711903 ( 51) TTTCCTGG 1 chrX:16383252-16383332 ( 25) TTTCCTGG 1 chrX:11477006-11477086 ( 20) TCTCCTGG 1 chrX:9233937-9234017 ( 43) TCTCCTGG 1 chrV:8050200-8050280 ( 2) TCTCCTGG 1 chrIV:9260970-9261050 ( 24) TCTCCTGG 1 chrII:13325312-13325392 ( 68) GTTCCTGG 1 chrX:11000847-11000927 ( 22) GCTCCTGG 1 chrIII:8262763-8262843 ( 64) GCTCCTGG 1 chrV:4151557-4151637 ( 11) GCTCCTGG 1 chrI:747063-747143 ( 71) GCTCCTGG 1 chrII:13886583-13886663 ( 40) CTTCCTGG 1 chrV:12197957-12198037 ( 19) CTTCCTGG 1 chrIV:8357398-8357478 ( 49) TTACCTGG 1 chrV:14325050-14325130 ( 68) TCTGCTGG 1 chrX:1441741-1441821 ( 18) TCTGCTGG 1 chrIV:11565228-11565308 ( 61) TCTGCTGG 1 chrIII:13615632-13615712 ( 18) CCTCCTGG 1 chrII:4870100-4870180 ( 47) CCTCCTGG 1 chrX:13466980-13467060 ( 49) CCTCCTGG 1 chrI:7202564-7202644 ( 36) TCACCTGG 1 chrII:10707624-10707704 ( 2) GTTGCTGG 1 chrI:2781222-2781302 ( 43) GTTGCTGG 1 chrIII:7888160-7888240 ( 28) GTTGCTGG 1 chrX:7613445-7613525 ( 67) GTACCTGG 1 chrII:2828018-2828098 ( 59) GTACCTGG 1 chrV:18663286-18663366 ( 3) GTACCTGG 1 chrII:8200250-8200330 ( 55) GCTGCTGG 1 chrIV:4264720-4264800 ( 36) GCACCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYTCCTGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.389 E= 5.4e-002 -1181 -101 39 115 -1181 75 -1181 123 -39 -1181 -1181 189 -1181 152 -50 -1181 -1181 183 -1181 -1181 -1181 -1181 -1181 215 -1181 -1181 186 -1181 -1181 -1181 186 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYTCCTGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 5.4e-002 0.000000 0.138889 0.361111 0.500000 0.000000 0.472222 0.000000 0.527778 0.166667 0.000000 0.000000 0.833333 0.000000 0.805556 0.194444 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYTCCTGG MEME-1 regular expression -------------------------------------------------------------------------------- [TG][TC]TCCTGG -------------------------------------------------------------------------------- Time 8.57 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGGAGCT MEME-2 width = 8 sites = 26 llr = 224 E-value = 2.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGGAGCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::82:3 pos.-specific C a::::2a: probability G ::aa:6:: matrix T :a::21:7 bits 2.2 * 2.0 * 1.8 ** * * 1.5 ***** * Relative 1.3 ***** ** Entropy 1.1 ***** ** (12.4 bits) 0.9 ***** ** 0.7 ***** ** 0.4 ***** ** 0.2 ******** 0.0 -------- Multilevel CTGGAGCT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:8358611-8358691 28 1.84e-05 CCTGGTGCTC CTGGAGCT CCGGCTTGTC chrIV:12109202-12109282 55 1.84e-05 CCTTGTGGTC CTGGAGCT CCTTGTCCTC chrX:1441741-1441821 38 1.84e-05 GGCTGGGCTG CTGGAGCT GGCTCCGGGG chrV:14240685-14240765 4 1.84e-05 GTG CTGGAGCT CCAAGTCCTG chrIV:11565228-11565308 5 1.84e-05 GCAA CTGGAGCT GAGGCTCCCG chrV:12197957-12198037 68 1.84e-05 CCCCGAATTC CTGGAGCT CCCTG chrIII:12993241-12993321 49 1.84e-05 CCCGGCCGTC CTGGAGCT CCGTTCTTTC chrX:11711823-11711903 13 1.84e-05 AATTCGTGAG CTGGAGCT GGAGTGGCTG chrII:8200250-8200330 68 1.84e-05 GCTGGAGCAA CTGGAGCT GCAGG chrII:10705516-10705596 8 3.63e-05 GGAGATG CTGGAGCA CCAGGACAAG chrIV:1769273-1769353 6 3.63e-05 GAGCC CTGGAGCA CCGGGAAGCG chrII:13325312-13325392 42 5.09e-05 CTTCCAGGTC CTGGAACT GATCCAATCA chrX:9233937-9234017 29 6.97e-05 CCTTGTGGTC CTGGACCT CCAGTCTCTC chrI:1669258-1669338 55 8.47e-05 cctcactcag ctggATCT AGTGCGATAG chrX:11000847-11000927 8 8.47e-05 TTGTTGC CTGGATCT CCTCTGGCTC chrIII:11704616-11704696 62 8.47e-05 CCAGGGCAGG CTGGATCT CCAGGTCGCC chrIII:13615632-13615712 37 1.04e-04 GCTCCGCCGC CTGGTGCT CCAGGAAATC chrIII:1439730-1439810 73 1.04e-04 GGAGGGGGCC CTGGTGCT chrIV:4264720-4264800 49 1.18e-04 CCTGGAGATG CTGGAACA AACGGAGCTC chrI:5807371-5807451 20 1.18e-04 ATGTGTTCAA CTGGAACA TACATTTTCT chrII:12175581-12175661 1 1.36e-04 . CTGGACCA CAAGGAAATC chrIV:14095617-14095697 17 1.36e-04 TCCGAGCAAG CTGGACCA CACAACATGA chrIV:10217066-10217146 39 1.36e-04 CCAGGACCAG CTGGACCA CCAGGAGAAA chrII:12716126-12716206 57 1.69e-04 GCACTACAGT CTGGTGCA CGGATTGCGG chrI:14130265-14130345 30 1.84e-04 GATGGTTCGG CTGGTACT CCCGGCAGAG chrI:11542801-11542881 59 1.99e-04 TCGCCTCATC CTTGAGCT GCTTAACCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:8358611-8358691 1.8e-05 27_[+2]_45 chrIV:12109202-12109282 1.8e-05 54_[+2]_18 chrX:1441741-1441821 1.8e-05 37_[+2]_35 chrV:14240685-14240765 1.8e-05 3_[+2]_69 chrIV:11565228-11565308 1.8e-05 4_[+2]_68 chrV:12197957-12198037 1.8e-05 67_[+2]_5 chrIII:12993241-12993321 1.8e-05 48_[+2]_24 chrX:11711823-11711903 1.8e-05 12_[+2]_60 chrII:8200250-8200330 1.8e-05 67_[+2]_5 chrII:10705516-10705596 3.6e-05 7_[+2]_65 chrIV:1769273-1769353 3.6e-05 5_[+2]_67 chrII:13325312-13325392 5.1e-05 41_[+2]_31 chrX:9233937-9234017 7e-05 28_[+2]_44 chrI:1669258-1669338 8.5e-05 54_[+2]_18 chrX:11000847-11000927 8.5e-05 7_[+2]_65 chrIII:11704616-11704696 8.5e-05 61_[+2]_11 chrIII:13615632-13615712 0.0001 36_[+2]_36 chrIII:1439730-1439810 0.0001 72_[+2] chrIV:4264720-4264800 0.00012 48_[+2]_24 chrI:5807371-5807451 0.00012 19_[+2]_53 chrII:12175581-12175661 0.00014 [+2]_72 chrIV:14095617-14095697 0.00014 16_[+2]_56 chrIV:10217066-10217146 0.00014 38_[+2]_34 chrII:12716126-12716206 0.00017 56_[+2]_16 chrI:14130265-14130345 0.00018 29_[+2]_43 chrI:11542801-11542881 0.0002 58_[+2]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGGAGCT width=8 seqs=26 chrII:8358611-8358691 ( 28) CTGGAGCT 1 chrIV:12109202-12109282 ( 55) CTGGAGCT 1 chrX:1441741-1441821 ( 38) CTGGAGCT 1 chrV:14240685-14240765 ( 4) CTGGAGCT 1 chrIV:11565228-11565308 ( 5) CTGGAGCT 1 chrV:12197957-12198037 ( 68) CTGGAGCT 1 chrIII:12993241-12993321 ( 49) CTGGAGCT 1 chrX:11711823-11711903 ( 13) CTGGAGCT 1 chrII:8200250-8200330 ( 68) CTGGAGCT 1 chrII:10705516-10705596 ( 8) CTGGAGCA 1 chrIV:1769273-1769353 ( 6) CTGGAGCA 1 chrII:13325312-13325392 ( 42) CTGGAACT 1 chrX:9233937-9234017 ( 29) CTGGACCT 1 chrI:1669258-1669338 ( 55) CTGGATCT 1 chrX:11000847-11000927 ( 8) CTGGATCT 1 chrIII:11704616-11704696 ( 62) CTGGATCT 1 chrIII:13615632-13615712 ( 37) CTGGTGCT 1 chrIII:1439730-1439810 ( 73) CTGGTGCT 1 chrIV:4264720-4264800 ( 49) CTGGAACA 1 chrI:5807371-5807451 ( 20) CTGGAACA 1 chrII:12175581-12175661 ( 1) CTGGACCA 1 chrIV:14095617-14095697 ( 17) CTGGACCA 1 chrIV:10217066-10217146 ( 39) CTGGACCA 1 chrII:12716126-12716206 ( 57) CTGGTGCA 1 chrI:14130265-14130345 ( 30) CTGGTACT 1 chrI:11542801-11542881 ( 59) CTTGAGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.98426 E= 2.4e+001 -1134 183 -1134 -1134 -1134 -1134 -1134 215 -1134 -1134 180 -254 -1134 -1134 186 -1134 195 -1134 -1134 -55 -51 -87 106 -96 -1134 183 -1134 -1134 49 -1134 -1134 162 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 2.4e+001 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.961538 0.038462 0.000000 0.000000 1.000000 0.000000 0.846154 0.000000 0.000000 0.153846 0.153846 0.153846 0.576923 0.115385 0.000000 1.000000 0.000000 0.000000 0.307692 0.000000 0.000000 0.692308 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGCT MEME-2 regular expression -------------------------------------------------------------------------------- CTGGAGC[TA] -------------------------------------------------------------------------------- Time 12.31 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCTGGTT MEME-3 width = 8 sites = 13 llr = 124 E-value = 1.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCTGGTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::1::2: pos.-specific C :8a::::: probability G ::::aa:2 matrix T a2:9::88 bits 2.2 * 2.0 * 1.8 * **** 1.5 * ****** Relative 1.3 ******** Entropy 1.1 ******** (13.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCCTGGTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTGGTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:11015998-11016078 48 1.54e-05 ttcctggggc tcctggTT GTCCGTCGGC chrIV:12109202-12109282 17 1.54e-05 TTCCTGGTCT TCCTGGTT GTCCATTATC chrII:4870100-4870180 31 1.54e-05 GTCCAGCTGG TCCTGGTT CTCCGTGTCC chrX:13466980-13467060 60 1.54e-05 CTCCTGGCTG TCCTGGTT GTCCATCGTT chrX:11711823-11711903 62 1.54e-05 TTCCTGGTGC TCCTGGTT GACCATCGGA chrX:16383252-16383332 54 1.54e-05 GTCCCTTCTC TCCTGGTT GACCTGGTTG chrI:13421204-13421284 50 2.78e-05 TTCTCCGGGT TTCTGGTT CCACGGAAAC chrV:9343996-9344076 3 2.78e-05 CC TTCTGGTT GTACAATGCA chrII:13152565-13152645 1 4.28e-05 . TCCTGGAT TTGGGATGGA chrIV:8357398-8357478 69 4.28e-05 ATGGTCCAAC TCCTGGAT CCCC chrII:8358611-8358691 17 6.17e-05 GTCCATCGTT TCCTGGTG CTCCTGGAGC chrV:8050200-8050280 13 6.17e-05 CTCCTGGTGG TCCTGGTG GTCCACGTGG chrII:2215810-2215890 23 7.67e-05 CCGCACATCT TCCAGGTT AATCTCCCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTGGTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:11015998-11016078 1.5e-05 47_[+3]_25 chrIV:12109202-12109282 1.5e-05 16_[+3]_56 chrII:4870100-4870180 1.5e-05 30_[+3]_42 chrX:13466980-13467060 1.5e-05 59_[+3]_13 chrX:11711823-11711903 1.5e-05 61_[+3]_11 chrX:16383252-16383332 1.5e-05 53_[+3]_19 chrI:13421204-13421284 2.8e-05 49_[+3]_23 chrV:9343996-9344076 2.8e-05 2_[+3]_70 chrII:13152565-13152645 4.3e-05 [+3]_72 chrIV:8357398-8357478 4.3e-05 68_[+3]_4 chrII:8358611-8358691 6.2e-05 16_[+3]_56 chrV:8050200-8050280 6.2e-05 12_[+3]_60 chrII:2215810-2215890 7.7e-05 22_[+3]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTGGTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCTGGTT width=8 seqs=13 chrII:11015998-11016078 ( 48) TCCTGGTT 1 chrIV:12109202-12109282 ( 17) TCCTGGTT 1 chrII:4870100-4870180 ( 31) TCCTGGTT 1 chrX:13466980-13467060 ( 60) TCCTGGTT 1 chrX:11711823-11711903 ( 62) TCCTGGTT 1 chrX:16383252-16383332 ( 54) TCCTGGTT 1 chrI:13421204-13421284 ( 50) TTCTGGTT 1 chrV:9343996-9344076 ( 3) TTCTGGTT 1 chrII:13152565-13152645 ( 1) TCCTGGAT 1 chrIV:8357398-8357478 ( 69) TCCTGGAT 1 chrII:8358611-8358691 ( 17) TCCTGGTG 1 chrV:8050200-8050280 ( 13) TCCTGGTG 1 chrII:2215810-2215890 ( 23) TCCAGGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTGGTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 1.8e+004 -1035 -1035 -1035 215 -1035 159 -1035 -55 -1035 183 -1035 -1035 -150 -1035 -1035 204 -1035 -1035 186 -1035 -1035 -1035 186 -1035 -51 -1035 -1035 191 -1035 -1035 -84 191 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTGGTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.8e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.846154 0.000000 0.153846 0.000000 1.000000 0.000000 0.000000 0.076923 0.000000 0.000000 0.923077 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.153846 0.000000 0.000000 0.846154 0.000000 0.000000 0.153846 0.846154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTGGTT MEME-3 regular expression -------------------------------------------------------------------------------- TCCTGGTT -------------------------------------------------------------------------------- Time 15.95 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAAAAAA MEME-4 width = 8 sites = 2 llr = 24 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAAAAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A a:aaaaaa pos.-specific C :::::::: probability G :a:::::: matrix T :::::::: bits 2.2 * ****** 2.0 * ****** 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAAAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:5105243-5105323 67 6.67e-06 AGAACCTGTG AGAAAAAA GGGTGT chrV:11075729-11075809 72 6.67e-06 CTCAATGGAC AGAAAAAA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:5105243-5105323 6.7e-06 66_[+4]_6 chrV:11075729-11075809 6.7e-06 71_[+4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAAAAAA width=8 seqs=2 chrII:5105243-5105323 ( 67) AGAAAAAA 1 chrV:11075729-11075809 ( 72) AGAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 2.1e+004 219 -765 -765 -765 -765 -765 185 -765 219 -765 -765 -765 219 -765 -765 -765 219 -765 -765 -765 219 -765 -765 -765 219 -765 -765 -765 219 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.1e+004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAAAA MEME-4 regular expression -------------------------------------------------------------------------------- AGAAAAAA -------------------------------------------------------------------------------- Time 19.58 secs. ******************************************************************************** ******************************************************************************** MOTIF AAACAAAA MEME-5 width = 8 sites = 2 llr = 24 E-value = 2.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAACAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A aaa:aaaa pos.-specific C :::a:::: probability G :::::::: matrix T :::::::: bits 2.2 *** **** 2.0 *** **** 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:13421204-13421284 64 6.79e-06 GGTTCCACGG AAACAAAA TTCCCATTT chrII:11329112-11329192 51 6.79e-06 GGAGAGTCGA AAACAAAA CCGACCGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:13421204-13421284 6.8e-06 63_[+5]_9 chrII:11329112-11329192 6.8e-06 50_[+5]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAACAAAA width=8 seqs=2 chrI:13421204-13421284 ( 64) AAACAAAA 1 chrII:11329112-11329192 ( 51) AAACAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 2.5e+004 219 -765 -765 -765 219 -765 -765 -765 219 -765 -765 -765 -765 183 -765 -765 219 -765 -765 -765 219 -765 -765 -765 219 -765 -765 -765 219 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-5 regular expression -------------------------------------------------------------------------------- AAACAAAA -------------------------------------------------------------------------------- Time 23.20 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:303441-303521 1.00e+00 80 chrV:20600833-20600913 9.63e-01 80 chrIII:11561796-11561876 3.33e-01 80 chrII:2850849-2850929 1.27e-01 80 chrII:14240090-14240170 8.90e-01 80 chrIII:7888160-7888240 6.11e-02 80 chrI:3356504-3356584 3.26e-01 80 chrIV:3618847-3618927 9.12e-01 80 chrV:194897-194977 9.02e-01 80 chrI:773010-773090 8.16e-01 80 chrII:14129517-14129597 2.09e-01 80 chrX:16383252-16383332 2.70e-04 24_[+1(1.54e-05)]_21_[+3(1.54e-05)]_\ 19 chrII:8200250-8200330 4.61e-05 58_[+2(3.63e-05)]_1_[+2(1.84e-05)]_\ 5 chrIV:3999833-3999913 7.44e-01 80 chrIV:4608834-4608914 1.57e-01 80 chrX:11711823-11711903 1.44e-05 12_[+2(1.84e-05)]_30_[+1(1.54e-05)]_\ 3_[+3(1.54e-05)]_11 chrIV:3731593-3731673 8.18e-02 80 chrII:10940670-10940750 9.13e-01 80 chrIV:8357398-8357478 5.88e-04 68_[+3(4.28e-05)]_4 chrII:13152565-13152645 4.95e-02 [+3(4.28e-05)]_72 chrIII:21389-21469 4.09e-01 80 chrX:1703234-1703314 9.97e-01 80 chrIV:3646642-3646722 4.38e-01 80 chrIII:2778786-2778866 9.97e-01 80 chrV:18663286-18663366 1.35e-01 80 chrI:11542801-11542881 4.05e-02 80 chrI:6037258-6037338 9.79e-01 80 chrIII:13564629-13564709 1.25e-01 80 chrV:20272406-20272486 2.38e-01 80 chrIII:12993241-12993321 4.41e-05 30_[+2(1.84e-05)]_10_[+2(1.84e-05)]_\ 6_[+1(1.54e-05)]_10 chrIII:7649128-7649208 4.37e-01 80 chrI:7202564-7202644 3.46e-02 80 chrX:14490585-14490665 6.31e-01 80 chrI:3274627-3274707 5.61e-01 80 chrIV:6735755-6735835 8.04e-01 80 chrII:13896429-13896509 3.86e-01 80 chrI:14373837-14373917 9.97e-01 80 chrIV:4077281-4077361 5.38e-01 80 chrI:1880037-1880117 6.05e-01 80 chrIV:3276566-3276646 5.59e-01 80 chrV:4790983-4791063 2.70e-01 80 chrV:19590948-19591028 9.27e-01 80 chrI:1004530-1004610 2.78e-01 80 chrI:1156702-1156782 5.52e-01 80 chrIV:3085956-3086036 4.98e-01 80 chrIII:3489708-3489788 5.80e-01 80 chrI:11032752-11032832 1.00e+00 80 chrV:3750232-3750312 1.29e-01 80 chrI:330462-330542 5.96e-01 80 chrI:5306060-5306140 2.01e-01 80 chrI:747063-747143 1.30e-02 70_[+1(7.72e-05)]_2 chrX:13924075-13924155 3.38e-01 80 chrII:2828018-2828098 8.89e-02 80 chrX:13466980-13467060 8.71e-04 59_[+3(1.54e-05)]_13 chrIV:566724-566804 6.89e-01 80 chrV:1504820-1504900 7.32e-01 80 chrIII:12909837-12909917 9.97e-01 80 chrIII:11843282-11843362 9.25e-01 80 chrV:17962606-17962686 1.31e-02 80 chrIV:13243827-13243907 9.80e-01 80 chrIV:9260970-9261050 1.96e-02 23_[+1(3.47e-05)]_49 chrI:1780935-1781015 4.76e-01 80 chrII:4870100-4870180 7.19e-04 30_[+3(1.54e-05)]_10_[+3(6.17e-05)]_\ 1_[+3(6.17e-05)]_15 chrV:4151557-4151637 2.38e-01 10_[+1(7.72e-05)]_62 chrV:12197957-12198037 1.75e-04 20_[+3(4.28e-05)]_39_[+2(1.84e-05)]_\ 5 chrI:2381370-2381450 6.78e-01 80 chrIII:853582-853662 8.51e-01 80 chrI:1180669-1180749 7.87e-01 80 chrIII:2476297-2476377 6.82e-01 80 chrIV:13066145-13066225 6.66e-02 80 chrX:1453151-1453231 8.51e-01 80 chrIV:16333235-16333315 9.96e-01 80 chrII:13272140-13272220 3.36e-03 36_[+4(2.42e-05)]_8_[+5(2.42e-05)]_\ 20 chrI:12340734-12340814 9.95e-01 80 chrIII:168580-168660 6.43e-01 80 chrV:5799705-5799785 2.69e-02 80 chrX:15594121-15594201 8.44e-01 80 chrV:189566-189646 4.87e-01 80 chrIII:11143099-11143179 9.75e-01 80 chrIII:11876360-11876440 9.90e-01 80 chrV:8050200-8050280 2.13e-03 1_[+1(3.47e-05)]_3_[+3(6.17e-05)]_\ 35_[+1(5.36e-05)]_17 chrI:5508840-5508920 2.81e-01 80 chrIII:11611825-11611905 9.91e-01 80 chrIII:2972750-2972830 9.57e-01 80 chrII:13451462-13451542 9.99e-01 80 chrII:2754744-2754824 1.00e+00 80 chrII:3045657-3045737 9.79e-01 80 chrIV:7925453-7925533 9.08e-01 80 chrII:13412858-13412938 8.45e-01 80 chrV:10561681-10561761 2.84e-01 80 chrI:1738989-1739069 9.74e-01 80 chrI:2781222-2781302 5.91e-04 46_[+2(1.84e-05)]_26 chrII:1224692-1224772 3.59e-01 80 chrIV:11565228-11565308 2.85e-03 4_[+2(1.84e-05)]_68 chrV:1465916-1465996 8.79e-01 80 chrV:15502983-15503063 6.54e-02 80 chrX:10336714-10336794 3.67e-01 80 chrV:10293866-10293946 5.16e-04 1_[+3(4.28e-05)]_23_[+1(1.54e-05)]_\ 3_[+3(1.54e-05)]_29 chrV:19042307-19042387 6.74e-01 80 chrII:304446-304526 1.66e-01 80 chrI:14267468-14267548 9.82e-01 80 chrI:2331946-2332026 7.66e-01 80 chrII:5640940-5641020 9.18e-01 80 chrIII:1439730-1439810 3.60e-02 80 chrII:12716126-12716206 1.26e-01 80 chrIII:10889003-10889083 1.32e-01 80 chrII:13316726-13316806 7.26e-02 80 chrI:840374-840454 2.23e-01 80 chrI:2803251-2803331 9.95e-01 80 chrIV:5221757-5221837 7.74e-01 80 chrV:17548774-17548854 3.69e-01 80 chrII:8201659-8201739 2.80e-01 80 chrV:9625737-9625817 5.21e-01 80 chrIII:8262763-8262843 4.52e-03 63_[+1(7.72e-05)]_9 chrII:13325312-13325392 7.06e-04 41_[+2(5.09e-05)]_18_[+1(5.36e-05)]_\ 5 chrIII:2476507-2476587 7.42e-01 80 chrIV:1054198-1054278 9.82e-01 80 chrIII:11704616-11704696 1.23e-02 61_[+2(8.47e-05)]_11 chrIII:13240166-13240246 1.74e-01 80 chrIV:3476785-3476865 9.90e-01 80 chrI:2388662-2388742 6.43e-01 80 chrII:10707624-10707704 2.37e-02 80 chrV:14320905-14320985 5.07e-01 80 chrIII:13605000-13605080 8.56e-01 80 chrIV:4249710-4249790 7.10e-01 80 chrX:16652425-16652505 1.20e-01 80 chrIII:11340507-11340587 9.91e-01 80 chrIV:16868460-16868540 9.92e-01 80 chrIII:1937910-1937990 2.65e-01 80 chrIII:13780395-13780475 1.37e-01 80 chrIII:11722549-11722629 8.25e-01 80 chrIV:9563907-9563987 3.71e-02 80 chrIV:1769273-1769353 5.48e-03 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chrIV:3686345-3686425 4.03e-01 80 chrV:4653395-4653475 1.02e-02 25_[+1(1.54e-05)]_19_[+1(7.72e-05)]_\ 10_[+1(1.54e-05)]_2 chrI:8259509-8259589 9.22e-01 80 chrII:8625537-8625617 4.13e-02 80 chrIV:9477688-9477768 7.84e-01 80 chrI:13421204-13421284 7.86e-06 49_[+3(2.78e-05)]_6_[+5(6.79e-06)]_\ 9 chrIV:11474275-11474355 7.22e-03 80 chrII:5105243-5105323 1.12e-02 66_[+4(6.67e-06)]_6 chrI:5807371-5807451 4.74e-02 80 chrI:7772599-7772679 8.54e-01 80 chrI:1823228-1823308 5.86e-01 80 chrIV:4264720-4264800 6.54e-04 30_[+2(3.63e-05)]_42 chrII:10527696-10527776 1.00e+00 80 chrV:15873940-15874020 7.91e-01 80 chrII:12042392-12042472 5.41e-01 80 chrII:12175581-12175661 2.83e-02 80 chrX:13144461-13144541 9.62e-01 80 chrI:10409360-10409440 9.13e-01 80 chrX:1379574-1379654 9.00e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************