******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/elt-3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:12086399-12086479 1.0000 80 chrX:13112821-13112901 1.0000 80 chrV:13935587-13935667 1.0000 80 chrX:2567859-2567939 1.0000 80 chrX:13937504-13937584 1.0000 80 chrI:4917396-4917476 1.0000 80 chrI:6263570-6263650 1.0000 80 chrIII:11727154-11727234 1.0000 80 chrX:13938091-13938171 1.0000 80 chrII:10074128-10074208 1.0000 80 chrX:11032532-11032612 1.0000 80 chrI:7243879-7243959 1.0000 80 chrV:10387569-10387649 1.0000 80 chrII:4391193-4391273 1.0000 80 chrII:2399978-2400058 1.0000 80 chrV:12011853-12011933 1.0000 80 chrIV:7651291-7651371 1.0000 80 chrII:14597958-14598038 1.0000 80 chrX:15375457-15375537 1.0000 80 chrV:12294266-12294346 1.0000 80 chrI:9084248-9084328 1.0000 80 chrX:6081935-6082015 1.0000 80 chrII:12942660-12942740 1.0000 80 chrX:7584148-7584228 1.0000 80 chrX:11137143-11137223 1.0000 80 chrII:14616579-14616659 1.0000 80 chrV:4630455-4630535 1.0000 80 chrV:10012781-10012861 1.0000 80 chrI:7115798-7115878 1.0000 80 chrX:13939509-13939589 1.0000 80 chrX:3495886-3495966 1.0000 80 chrIV:15395386-15395466 1.0000 80 chrIV:6652821-6652901 1.0000 80 chrI:5883885-5883965 1.0000 80 chrIV:5140139-5140219 1.0000 80 chrII:9709048-9709128 1.0000 80 chrX:10172335-10172415 1.0000 80 chrI:9330902-9330982 1.0000 80 chrIV:5339433-5339513 1.0000 80 chrII:4749728-4749808 1.0000 80 chrIII:8036185-8036265 1.0000 80 chrII:9345278-9345358 1.0000 80 chrV:9654309-9654389 1.0000 80 chrII:10515588-10515668 1.0000 80 chrX:4663449-4663529 1.0000 80 chrX:14907534-14907614 1.0000 80 chrII:11502079-11502159 1.0000 80 chrI:8057812-8057892 1.0000 80 chrII:900868-900948 1.0000 80 chrI:6951192-6951272 1.0000 80 chrIII:7199686-7199766 1.0000 80 chrIV:4032493-4032573 1.0000 80 chrII:10011113-10011193 1.0000 80 chrI:7404858-7404938 1.0000 80 chrX:5605243-5605323 1.0000 80 chrI:7116815-7116895 1.0000 80 chrII:1189810-1189890 1.0000 80 chrI:8797762-8797842 1.0000 80 chrII:13150118-13150198 1.0000 80 chrIII:12851229-12851309 1.0000 80 chrIV:10610092-10610172 1.0000 80 chrIV:8450694-8450774 1.0000 80 chrV:14657108-14657188 1.0000 80 chrI:6886203-6886283 1.0000 80 chrII:9028285-9028365 1.0000 80 chrX:3756430-3756510 1.0000 80 chrII:6909724-6909804 1.0000 80 chrI:2773929-2774009 1.0000 80 chrV:9633468-9633548 1.0000 80 chrI:10355602-10355682 1.0000 80 chrIV:7985878-7985958 1.0000 80 chrI:4672782-4672862 1.0000 80 chrII:11849683-11849763 1.0000 80 chrI:6999640-6999720 1.0000 80 chrIV:4587687-4587767 1.0000 80 chrIV:11092819-11092899 1.0000 80 chrV:10460856-10460936 1.0000 80 chrX:11015088-11015168 1.0000 80 chrX:9608294-9608374 1.0000 80 chrX:6640942-6641022 1.0000 80 chrV:8073308-8073388 1.0000 80 chrV:9504631-9504711 1.0000 80 chrV:15708096-15708176 1.0000 80 chrIV:6426484-6426564 1.0000 80 chrX:2864031-2864111 1.0000 80 chrII:1503791-1503871 1.0000 80 chrII:2805708-2805788 1.0000 80 chrV:6504293-6504373 1.0000 80 chrV:5701318-5701398 1.0000 80 chrIV:11809196-11809276 1.0000 80 chrIII:5464981-5465061 1.0000 80 chrIII:4413275-4413355 1.0000 80 chrII:12053636-12053716 1.0000 80 chrIV:302896-302976 1.0000 80 chrII:7628808-7628888 1.0000 80 chrII:12237745-12237825 1.0000 80 chrI:13064941-13065021 1.0000 80 chrIII:3355977-3356057 1.0000 80 chrIII:7566255-7566335 1.0000 80 chrI:9093527-9093607 1.0000 80 chrIV:9633222-9633302 1.0000 80 chrI:11196658-11196738 1.0000 80 chrX:498800-498880 1.0000 80 chrII:7789735-7789815 1.0000 80 chrV:6503274-6503354 1.0000 80 chrV:11739986-11740066 1.0000 80 chrII:6887736-6887816 1.0000 80 chrIII:8036660-8036740 1.0000 80 chrV:5693750-5693830 1.0000 80 chrIII:3041235-3041315 1.0000 80 chrV:15286168-15286248 1.0000 80 chrIII:9502322-9502402 1.0000 80 chrI:11782457-11782537 1.0000 80 chrV:11508969-11509049 1.0000 80 chrV:11220587-11220667 1.0000 80 chrX:16263395-16263475 1.0000 80 chrV:10571711-10571791 1.0000 80 chrII:9753197-9753277 1.0000 80 chrIV:8864845-8864925 1.0000 80 chrV:16780773-16780853 1.0000 80 chrI:3709932-3710012 1.0000 80 chrV:12161093-12161173 1.0000 80 chrV:11795453-11795533 1.0000 80 chrI:14657233-14657313 1.0000 80 chrIII:2647637-2647717 1.0000 80 chrV:7878551-7878631 1.0000 80 chrII:1850998-1851078 1.0000 80 chrX:9403138-9403218 1.0000 80 chrIII:9119045-9119125 1.0000 80 chrX:10168711-10168791 1.0000 80 chrIII:3435383-3435463 1.0000 80 chrX:14737108-14737188 1.0000 80 chrIII:4328791-4328871 1.0000 80 chrI:4328988-4329068 1.0000 80 chrII:9032077-9032157 1.0000 80 chrIV:5333689-5333769 1.0000 80 chrI:14155255-14155335 1.0000 80 chrX:504196-504276 1.0000 80 chrIV:2279910-2279990 1.0000 80 chrV:14095100-14095180 1.0000 80 chrX:6514675-6514755 1.0000 80 chrII:6610480-6610560 1.0000 80 chrII:5768557-5768637 1.0000 80 chrIV:8464317-8464397 1.0000 80 chrIII:15397-15477 1.0000 80 chrI:6075040-6075120 1.0000 80 chrI:7056160-7056240 1.0000 80 chrIV:13080312-13080392 1.0000 80 chrIV:10261199-10261279 1.0000 80 chrII:12264102-12264182 1.0000 80 chrV:14499241-14499321 1.0000 80 chrV:3617041-3617121 1.0000 80 chrI:7114888-7114968 1.0000 80 chrV:8040847-8040927 1.0000 80 chrII:6989611-6989691 1.0000 80 chrV:12667630-12667710 1.0000 80 chrX:8455878-8455958 1.0000 80 chrX:6051020-6051100 1.0000 80 chrIV:9755858-9755938 1.0000 80 chrX:7143655-7143735 1.0000 80 chrIII:1622532-1622612 1.0000 80 chrX:16558264-16558344 1.0000 80 chrX:500371-500451 1.0000 80 chrV:19613256-19613336 1.0000 80 chrIV:1866955-1867035 1.0000 80 chrX:6275453-6275533 1.0000 80 chrII:1182194-1182274 1.0000 80 chrIV:16015916-16015996 1.0000 80 chrV:7837098-7837178 1.0000 80 chrX:1458938-1459018 1.0000 80 chrII:12615573-12615653 1.0000 80 chrII:13293102-13293182 1.0000 80 chrIV:8027816-8027896 1.0000 80 chrII:11611579-11611659 1.0000 80 chrX:2178101-2178181 1.0000 80 chrX:13663810-13663890 1.0000 80 chrI:7756797-7756877 1.0000 80 chrX:14709788-14709868 1.0000 80 chrX:5468015-5468095 1.0000 80 chrI:10157533-10157613 1.0000 80 chrIII:4189766-4189846 1.0000 80 chrI:2598521-2598601 1.0000 80 chrII:3242003-3242083 1.0000 80 chrIV:9376675-9376755 1.0000 80 chrV:10557239-10557319 1.0000 80 chrIII:3808699-3808779 1.0000 80 chrIII:13542595-13542675 1.0000 80 chrII:11163442-11163522 1.0000 80 chrIV:8044725-8044805 1.0000 80 chrII:6712539-6712619 1.0000 80 chrIII:7298268-7298348 1.0000 80 chrIII:13393758-13393838 1.0000 80 chrX:2946722-2946802 1.0000 80 chrII:9752413-9752493 1.0000 80 chrV:3989327-3989407 1.0000 80 chrI:8869164-8869244 1.0000 80 chrIII:14846-14926 1.0000 80 chrIII:7489296-7489376 1.0000 80 chrX:15626316-15626396 1.0000 80 chrI:159426-159506 1.0000 80 chrX:10177469-10177549 1.0000 80 chrIV:12711153-12711233 1.0000 80 chrI:12540754-12540834 1.0000 80 chrIV:9535269-9535349 1.0000 80 chrV:14135206-14135286 1.0000 80 chrX:7590865-7590945 1.0000 80 chrI:1689039-1689119 1.0000 80 chrI:11870188-11870268 1.0000 80 chrIII:748851-748931 1.0000 80 chrX:5714413-5714493 1.0000 80 chrI:9333192-9333272 1.0000 80 chrV:9588808-9588888 1.0000 80 chrII:11056952-11057032 1.0000 80 chrV:4518839-4518919 1.0000 80 chrII:3556746-3556826 1.0000 80 chrV:13173892-13173972 1.0000 80 chrX:8752707-8752787 1.0000 80 chrV:13490024-13490104 1.0000 80 chrV:6365701-6365781 1.0000 80 chrX:6109558-6109638 1.0000 80 chrIV:9716630-9716710 1.0000 80 chrIV:14468245-14468325 1.0000 80 chrIV:14870036-14870116 1.0000 80 chrIV:13682915-13682995 1.0000 80 chrX:5079458-5079538 1.0000 80 chrI:11786090-11786170 1.0000 80 chrI:4328271-4328351 1.0000 80 chrII:13675373-13675453 1.0000 80 chrIII:9679044-9679124 1.0000 80 chrV:3979977-3980057 1.0000 80 chrI:10514027-10514107 1.0000 80 chrIV:6657709-6657789 1.0000 80 chrIII:3480400-3480480 1.0000 80 chrX:5854571-5854651 1.0000 80 chrII:12622300-12622380 1.0000 80 chrV:11801583-11801663 1.0000 80 chrIII:154328-154408 1.0000 80 chrIII:5921442-5921522 1.0000 80 chrI:2761039-2761119 1.0000 80 chrII:4562717-4562797 1.0000 80 chrI:6580606-6580686 1.0000 80 chrIV:2195830-2195910 1.0000 80 chrIV:5939253-5939333 1.0000 80 chrV:11148025-11148105 1.0000 80 chrX:17644005-17644085 1.0000 80 chrX:2115323-2115403 1.0000 80 chrII:9344174-9344254 1.0000 80 chrIII:5096894-5096974 1.0000 80 chrX:10686615-10686695 1.0000 80 chrII:4420091-4420171 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_elt-3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/elt-3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.308 C 0.188 G 0.181 T 0.323 Background letter frequencies (from file dataset with add-one prior applied): A 0.308 C 0.188 G 0.181 T 0.323 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGATAAGR MEME-1 width = 8 sites = 95 llr = 707 E-value = 6.4e-038 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGATAAGR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:a:98:6 pos.-specific C :::::131 probability G :a::1:73 matrix T 9::a:11: bits 2.5 * 2.2 * 2.0 * 1.7 ** Relative 1.5 *** Entropy 1.2 ***** * (10.7 bits) 1.0 ***** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGATAAGA consensus CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5921442-5921522 16 3.08e-05 TCAGCACACG TGATAAGA AATACTCGTT chrV:3979977-3980057 28 3.08e-05 TGACCGCGTC TGATAAGA TAGTGTGTTG chrV:4518839-4518919 53 3.08e-05 CAAAGTGATA TGATAAGA AACTGGTTTT chrI:11870188-11870268 68 3.08e-05 AATTGTTGAG TGATAAGA TGATA chrIII:13542595-13542675 51 3.08e-05 TCCCCGTCAT TGATAAGA TAAGAAGACA chrX:5468015-5468095 13 3.08e-05 TTTGCTAAAC TGATAAGA CTTTTTGATA chrII:11611579-11611659 32 3.08e-05 CGATGAAAAT TGATAAGA AGGGGAAAAG chrII:1182194-1182274 30 3.08e-05 CTTCCGATAG TGATAAGA ATAAGGTGAT chrIII:15397-15477 64 3.08e-05 CGCAGACAAT TGATAAGA CTAGTGATA chrV:14095100-14095180 66 3.08e-05 GATTATCTTT TGATAAGA TTTGATT chrI:14657233-14657313 43 3.08e-05 CTATTTCAAC TGATAAGA TAATCTGATC chrIII:8036660-8036740 45 3.08e-05 TTTTTTGATT TGATAAGA GATAATTTGA chrIII:7566255-7566335 16 3.08e-05 ATTGAAGAAG TGATAAGA AGTGATATCA chrIII:3355977-3356057 26 3.08e-05 TGTTTTTTAT TGATAAGA ATAATCAACA chrII:2805708-2805788 68 3.08e-05 GGACACTAGG TGATAAGA TAACA chrIV:6426484-6426564 24 3.08e-05 GATAACAAAC TGATAAGA TAACACGACA chrIV:11092819-11092899 58 3.08e-05 TCTACAAAAG TGATAAGA AGATAAGAGA chrIV:7985878-7985958 51 3.08e-05 ATTGATATAT TGATAAGA TTGTTAAGAG chrI:10355602-10355682 34 3.08e-05 GCTAATCAAT TGATAAGA TAATAAAAAG chrII:6909724-6909804 55 3.08e-05 ACATCTCATT TGATAAGA TTGTGTTTTG chrII:9028285-9028365 18 3.08e-05 TTTGATAAAA TGATAAGA GGAGAGTGTT chrII:14616579-14616659 20 3.08e-05 ACTGTAGTTG TGATAAGA AAGTGATAGA chrV:12011853-12011933 65 3.08e-05 ATTGGGAAAA TGATAAGA TACCTGTA chrX:11032532-11032612 26 3.08e-05 TTTTCTTCAG TGATAAGA TACGGGATAA chrI:4917396-4917476 50 3.08e-05 AATTCCTCAT TGATAAGA TAACGACGCG chrI:4328271-4328351 71 4.88e-05 ACACCAAAAG TGATAAGG TT chrI:12540754-12540834 38 4.88e-05 CCGGTTCCAG TGATAAGG AGGGGATTCC chrIII:3808699-3808779 31 4.88e-05 GTGCTTAAAG TGATAAGG AAATCACTTT chrIV:16015916-16015996 4 4.88e-05 GAA TGATAAGG TGATAAAGAG chrIII:4328791-4328871 73 4.88e-05 ATATAAGAAG TGATAAGG chrV:16780773-16780853 40 4.88e-05 CTGGTTGAAA TGATAAGG AAAAATCACC chrII:12053636-12053716 5 4.88e-05 CGAA TGATAAGG GAAGTGTCCA chrX:9608294-9608374 73 4.88e-05 AAGCGCTAGG TGATAAGG chrII:900868-900948 2 4.88e-05 T TGATAAGG ATGGATTTCT chrX:4663449-4663529 31 4.88e-05 CGGATATGAT TGATAAGG TGATATCAGA chrX:7584148-7584228 31 4.88e-05 TGAGGAGGAG TGATAAGG AGTAGTTAAC chrII:3556746-3556826 5 8.08e-05 CAAC TGATAACA TCTCCTCCTC chrX:10177469-10177549 25 8.08e-05 CAATTTGTAA TGATAACA ACGAAATGTA chrV:19613256-19613336 56 8.08e-05 CTTATCACGT TGATAACA AAAATCTTCT chrV:3617041-3617121 69 8.08e-05 GGTGTCAATG TGATAACA ATGA chrII:10515588-10515668 20 8.08e-05 ACTAATCAAC TGATAACA GGGAATAGAG chrV:10012781-10012861 39 8.08e-05 CAATTgatac tgataaca gatatcagta chrX:13937504-13937584 73 8.08e-05 ATGTCTAGCC TGATAACA chrIII:14846-14926 12 9.96e-05 GTAGTGGAGC TGATAACG ATTTTCTCTG chrI:7243879-7243959 40 9.96e-05 GGGCGTGTGA TGATAACG TACCCAGATT chrI:6263570-6263650 25 9.96e-05 ATTTATCACT TGATAACG GATAGATTGT chrIII:5096894-5096974 65 1.18e-04 TATCATTCAT TGATAAGC AGAGATAT chrX:8455878-8455958 46 1.18e-04 CAATGCGAAG TGATAAGC AAAATGAAAG chrII:7789735-7789815 45 1.18e-04 TTCATTTCTA TGATAAGC TTAAAAAGAT chrII:1189810-1189890 37 1.18e-04 GATAGATAAC TGATAAGC GCTGAGAAAT chrIV:13080312-13080392 64 1.37e-04 GTGTCGATCG TGATACGA AAACTTGGT chrIV:10610092-10610172 49 1.37e-04 ACAGCAAAGA TGATACGA ATCTTTGGTT chrIV:1866955-1867035 1 1.69e-04 . TGATATGA TTTCGTTTTC chrX:14737108-14737188 64 1.69e-04 CAATGATATT TGATATGA TCTACGACG chrX:2567859-2567939 6 1.69e-04 GAACC TGATATGA TCAAAAATAG chrIII:748851-748931 58 1.98e-04 GACTAGATGA TGATGAGA TACCCCTCCC chrIII:9679044-9679124 45 2.65e-04 AGGAGGTGTC TGATATGG AGAAATGATA chrI:8869164-8869244 9 2.65e-04 ataagata agataaga ATTCAAATTT chrIII:7298268-7298348 32 2.65e-04 CTGTCAGATT AGATAAGA TGGACCTGAG chrIV:8027816-8027896 63 2.65e-04 AGGCATTTGG AGATAAGA TAACTTGTAT chrX:16558264-16558344 4 2.65e-04 AAG AGATAAGA GAAAAAGATT chrV:11220587-11220667 41 2.65e-04 TGAAACATGC AGATAAGA TTGGTTTATA chrII:12942660-12942740 33 2.65e-04 AATTGTGACG AGATAAGA TAAGAAATCC chrX:15375457-15375537 3 2.65e-04 AT TGATAGGA AAATTGATAA chrII:4562717-4562797 28 3.03e-04 AGGATTGTTA TGATAGGG AGTGATATCT chrIV:10261199-10261279 1 3.03e-04 . AGATAAGG GATAAAGATA chrIII:154328-154408 48 3.78e-04 CTCTATCAGC TGATAACC CGTTCTTCCT chrI:9093527-9093607 47 3.78e-04 TTTTATTGAT TGATAATA TATATGATTA chrIII:13393758-13393838 55 4.27e-04 GATCACTCGT TGATACCA GTATCACATT chrI:14155255-14155335 60 4.27e-04 TCAATGTCCT TGAAAAGA CGGGCATTTG chrII:9753197-9753277 19 4.27e-04 GTTCGAAAGA TGAAAAGA GTGTAATAAA chrII:13293102-13293182 24 4.92e-04 GAAAAACATG TGATAATG ATCTTCTGGA chrI:6075040-6075120 25 4.92e-04 TCAATCAATT TGATATCA TTTCTCTTTG chrX:9403138-9403218 34 4.92e-04 TCTTACGAAT TGATATCA ACTTCTCGGA chrIII:5464981-5465061 3 4.92e-04 TT TGATATCA TTCATGTAAT chrV:8073308-8073388 41 4.92e-04 ATTCATTCAC TGATAATG TTCTAATCTT chrIV:4032493-4032573 8 4.92e-04 CAGAGAG TGATAATG ATAATCTGCA chrII:4749728-4749808 42 4.92e-04 ccaaagatat tgataatg atcaatgaGA chrV:12294266-12294346 32 4.92e-04 atgatgatga tgataatg attatTTAAC chrI:13064941-13065021 10 5.40e-04 CTTGCAGTT TGATACCG TAATTGCCAT chrIII:9502322-9502402 33 6.09e-04 CAGCACTGAT TGATATCG CAACAGGATT chrIII:8036185-8036265 21 6.09e-04 AATTTAAATT TGATAGCA AAACCAGTTT chrII:14597958-14598038 59 6.09e-04 TTCTTCTACT TGATATCG GTTGGGTGAT chrX:2115323-2115403 15 6.52e-04 GATATACATT TGATAAGT TCCGTTCTCG chrII:6989611-6989691 17 6.52e-04 GATGTTGAGG TGATAAGT GATAAAAAAG chrI:11782457-11782537 9 6.52e-04 GAGGCAGA TGATGACG GTCTGTGTAG chrV:15286168-15286248 58 6.52e-04 CGAGCGGTTG TGATGACG TCAGGACGAT chrI:8797762-8797842 42 6.52e-04 ATGTCTTCTG TGATGACG TACTCGATTA chrIV:13682915-13682995 68 6.81e-04 AGATATTATT TGATAGCG AAGCC chrI:11786090-11786170 32 7.13e-04 TTCTTACAAC TGATTAGA AATCATTTCG chrIII:1622532-1622612 66 7.13e-04 CGAGCGACCT TGATTAGA GAATGAT chrV:6365701-6365781 15 7.74e-04 CTGGATGTAG TGAAAACA AATCAAAAAG chrIV:11809196-11809276 51 7.74e-04 CTTCTTTATT TGAAAACA TCGTTCAATC chrV:9504631-9504711 32 9.33e-04 ACGGAGATTT AGATACGA GAATAAGAAA chrIII:2647637-2647717 21 9.70e-04 GATTGGTTGT TGATGCGG GGGAGAAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5921442-5921522 3.1e-05 15_[+1]_57 chrV:3979977-3980057 3.1e-05 27_[+1]_45 chrV:4518839-4518919 3.1e-05 52_[+1]_20 chrI:11870188-11870268 3.1e-05 67_[+1]_5 chrIII:13542595-13542675 3.1e-05 50_[+1]_22 chrX:5468015-5468095 3.1e-05 12_[+1]_60 chrII:11611579-11611659 3.1e-05 31_[+1]_41 chrII:1182194-1182274 3.1e-05 29_[+1]_43 chrIII:15397-15477 3.1e-05 63_[+1]_9 chrV:14095100-14095180 3.1e-05 65_[+1]_7 chrI:14657233-14657313 3.1e-05 42_[+1]_30 chrIII:8036660-8036740 3.1e-05 44_[+1]_28 chrIII:7566255-7566335 3.1e-05 15_[+1]_57 chrIII:3355977-3356057 3.1e-05 25_[+1]_47 chrII:2805708-2805788 3.1e-05 67_[+1]_5 chrIV:6426484-6426564 3.1e-05 23_[+1]_49 chrIV:11092819-11092899 3.1e-05 57_[+1]_15 chrIV:7985878-7985958 3.1e-05 50_[+1]_22 chrI:10355602-10355682 3.1e-05 33_[+1]_39 chrII:6909724-6909804 3.1e-05 54_[+1]_18 chrII:9028285-9028365 3.1e-05 17_[+1]_55 chrII:14616579-14616659 3.1e-05 19_[+1]_53 chrV:12011853-12011933 3.1e-05 64_[+1]_8 chrX:11032532-11032612 3.1e-05 25_[+1]_47 chrI:4917396-4917476 3.1e-05 49_[+1]_23 chrI:4328271-4328351 4.9e-05 70_[+1]_2 chrI:12540754-12540834 4.9e-05 37_[+1]_35 chrIII:3808699-3808779 4.9e-05 30_[+1]_42 chrIV:16015916-16015996 4.9e-05 3_[+1]_69 chrIII:4328791-4328871 4.9e-05 72_[+1] chrV:16780773-16780853 4.9e-05 39_[+1]_33 chrII:12053636-12053716 4.9e-05 4_[+1]_68 chrX:9608294-9608374 4.9e-05 72_[+1] chrII:900868-900948 4.9e-05 1_[+1]_71 chrX:4663449-4663529 4.9e-05 30_[+1]_42 chrX:7584148-7584228 4.9e-05 30_[+1]_42 chrII:3556746-3556826 8.1e-05 4_[+1]_68 chrX:10177469-10177549 8.1e-05 24_[+1]_48 chrV:19613256-19613336 8.1e-05 55_[+1]_17 chrV:3617041-3617121 8.1e-05 68_[+1]_4 chrII:10515588-10515668 8.1e-05 19_[+1]_53 chrV:10012781-10012861 8.1e-05 38_[+1]_34 chrX:13937504-13937584 8.1e-05 72_[+1] chrIII:14846-14926 0.0001 11_[+1]_61 chrI:7243879-7243959 0.0001 39_[+1]_33 chrI:6263570-6263650 0.0001 24_[+1]_48 chrIII:5096894-5096974 0.00012 64_[+1]_8 chrX:8455878-8455958 0.00012 45_[+1]_27 chrII:7789735-7789815 0.00012 44_[+1]_28 chrII:1189810-1189890 0.00012 36_[+1]_36 chrIV:13080312-13080392 0.00014 63_[+1]_9 chrIV:10610092-10610172 0.00014 48_[+1]_24 chrIV:1866955-1867035 0.00017 [+1]_72 chrX:14737108-14737188 0.00017 63_[+1]_9 chrX:2567859-2567939 0.00017 5_[+1]_67 chrIII:748851-748931 0.0002 57_[+1]_15 chrIII:9679044-9679124 0.00026 44_[+1]_28 chrI:8869164-8869244 0.00026 8_[+1]_64 chrIII:7298268-7298348 0.00026 31_[+1]_41 chrIV:8027816-8027896 0.00026 62_[+1]_10 chrX:16558264-16558344 0.00026 3_[+1]_69 chrV:11220587-11220667 0.00026 40_[+1]_32 chrII:12942660-12942740 0.00026 32_[+1]_40 chrX:15375457-15375537 0.00026 2_[+1]_70 chrII:4562717-4562797 0.0003 27_[+1]_45 chrIV:10261199-10261279 0.0003 [+1]_72 chrIII:154328-154408 0.00038 47_[+1]_25 chrI:9093527-9093607 0.00038 46_[+1]_26 chrIII:13393758-13393838 0.00043 54_[+1]_18 chrI:14155255-14155335 0.00043 59_[+1]_13 chrII:9753197-9753277 0.00043 18_[+1]_54 chrII:13293102-13293182 0.00049 23_[+1]_49 chrI:6075040-6075120 0.00049 24_[+1]_48 chrX:9403138-9403218 0.00049 33_[+1]_39 chrIII:5464981-5465061 0.00049 2_[+1]_70 chrV:8073308-8073388 0.00049 40_[+1]_32 chrIV:4032493-4032573 0.00049 7_[+1]_65 chrII:4749728-4749808 0.00049 41_[+1]_31 chrV:12294266-12294346 0.00049 31_[+1]_41 chrI:13064941-13065021 0.00054 9_[+1]_63 chrIII:9502322-9502402 0.00061 32_[+1]_40 chrIII:8036185-8036265 0.00061 20_[+1]_52 chrII:14597958-14598038 0.00061 58_[+1]_14 chrX:2115323-2115403 0.00065 14_[+1]_58 chrII:6989611-6989691 0.00065 16_[+1]_56 chrI:11782457-11782537 0.00065 8_[+1]_64 chrV:15286168-15286248 0.00065 57_[+1]_15 chrI:8797762-8797842 0.00065 41_[+1]_31 chrIV:13682915-13682995 0.00068 67_[+1]_5 chrI:11786090-11786170 0.00071 31_[+1]_41 chrIII:1622532-1622612 0.00071 65_[+1]_7 chrV:6365701-6365781 0.00077 14_[+1]_58 chrIV:11809196-11809276 0.00077 50_[+1]_22 chrV:9504631-9504711 0.00093 31_[+1]_41 chrIII:2647637-2647717 0.00097 20_[+1]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGATAAGR width=8 seqs=95 chrIII:5921442-5921522 ( 16) TGATAAGA 1 chrV:3979977-3980057 ( 28) TGATAAGA 1 chrV:4518839-4518919 ( 53) TGATAAGA 1 chrI:11870188-11870268 ( 68) TGATAAGA 1 chrIII:13542595-13542675 ( 51) TGATAAGA 1 chrX:5468015-5468095 ( 13) TGATAAGA 1 chrII:11611579-11611659 ( 32) TGATAAGA 1 chrII:1182194-1182274 ( 30) TGATAAGA 1 chrIII:15397-15477 ( 64) TGATAAGA 1 chrV:14095100-14095180 ( 66) TGATAAGA 1 chrI:14657233-14657313 ( 43) TGATAAGA 1 chrIII:8036660-8036740 ( 45) TGATAAGA 1 chrIII:7566255-7566335 ( 16) TGATAAGA 1 chrIII:3355977-3356057 ( 26) TGATAAGA 1 chrII:2805708-2805788 ( 68) TGATAAGA 1 chrIV:6426484-6426564 ( 24) TGATAAGA 1 chrIV:11092819-11092899 ( 58) TGATAAGA 1 chrIV:7985878-7985958 ( 51) TGATAAGA 1 chrI:10355602-10355682 ( 34) TGATAAGA 1 chrII:6909724-6909804 ( 55) TGATAAGA 1 chrII:9028285-9028365 ( 18) TGATAAGA 1 chrII:14616579-14616659 ( 20) TGATAAGA 1 chrV:12011853-12011933 ( 65) TGATAAGA 1 chrX:11032532-11032612 ( 26) TGATAAGA 1 chrI:4917396-4917476 ( 50) TGATAAGA 1 chrI:4328271-4328351 ( 71) TGATAAGG 1 chrI:12540754-12540834 ( 38) TGATAAGG 1 chrIII:3808699-3808779 ( 31) TGATAAGG 1 chrIV:16015916-16015996 ( 4) TGATAAGG 1 chrIII:4328791-4328871 ( 73) TGATAAGG 1 chrV:16780773-16780853 ( 40) TGATAAGG 1 chrII:12053636-12053716 ( 5) TGATAAGG 1 chrX:9608294-9608374 ( 73) TGATAAGG 1 chrII:900868-900948 ( 2) TGATAAGG 1 chrX:4663449-4663529 ( 31) TGATAAGG 1 chrX:7584148-7584228 ( 31) TGATAAGG 1 chrII:3556746-3556826 ( 5) TGATAACA 1 chrX:10177469-10177549 ( 25) TGATAACA 1 chrV:19613256-19613336 ( 56) TGATAACA 1 chrV:3617041-3617121 ( 69) TGATAACA 1 chrII:10515588-10515668 ( 20) TGATAACA 1 chrV:10012781-10012861 ( 39) TGATAACA 1 chrX:13937504-13937584 ( 73) TGATAACA 1 chrIII:14846-14926 ( 12) TGATAACG 1 chrI:7243879-7243959 ( 40) TGATAACG 1 chrI:6263570-6263650 ( 25) TGATAACG 1 chrIII:5096894-5096974 ( 65) TGATAAGC 1 chrX:8455878-8455958 ( 46) TGATAAGC 1 chrII:7789735-7789815 ( 45) TGATAAGC 1 chrII:1189810-1189890 ( 37) TGATAAGC 1 chrIV:13080312-13080392 ( 64) TGATACGA 1 chrIV:10610092-10610172 ( 49) TGATACGA 1 chrIV:1866955-1867035 ( 1) TGATATGA 1 chrX:14737108-14737188 ( 64) TGATATGA 1 chrX:2567859-2567939 ( 6) TGATATGA 1 chrIII:748851-748931 ( 58) TGATGAGA 1 chrIII:9679044-9679124 ( 45) TGATATGG 1 chrI:8869164-8869244 ( 9) AGATAAGA 1 chrIII:7298268-7298348 ( 32) AGATAAGA 1 chrIV:8027816-8027896 ( 63) AGATAAGA 1 chrX:16558264-16558344 ( 4) AGATAAGA 1 chrV:11220587-11220667 ( 41) AGATAAGA 1 chrII:12942660-12942740 ( 33) AGATAAGA 1 chrX:15375457-15375537 ( 3) TGATAGGA 1 chrII:4562717-4562797 ( 28) TGATAGGG 1 chrIV:10261199-10261279 ( 1) AGATAAGG 1 chrIII:154328-154408 ( 48) TGATAACC 1 chrI:9093527-9093607 ( 47) TGATAATA 1 chrIII:13393758-13393838 ( 55) TGATACCA 1 chrI:14155255-14155335 ( 60) TGAAAAGA 1 chrII:9753197-9753277 ( 19) TGAAAAGA 1 chrII:13293102-13293182 ( 24) TGATAATG 1 chrI:6075040-6075120 ( 25) TGATATCA 1 chrX:9403138-9403218 ( 34) TGATATCA 1 chrIII:5464981-5465061 ( 3) TGATATCA 1 chrV:8073308-8073388 ( 41) TGATAATG 1 chrIV:4032493-4032573 ( 8) TGATAATG 1 chrII:4749728-4749808 ( 42) TGATAATG 1 chrV:12294266-12294346 ( 32) TGATAATG 1 chrI:13064941-13065021 ( 10) TGATACCG 1 chrIII:9502322-9502402 ( 33) TGATATCG 1 chrIII:8036185-8036265 ( 21) TGATAGCA 1 chrII:14597958-14598038 ( 59) TGATATCG 1 chrX:2115323-2115403 ( 15) TGATAAGT 1 chrII:6989611-6989691 ( 17) TGATAAGT 1 chrI:11782457-11782537 ( 9) TGATGACG 1 chrV:15286168-15286248 ( 58) TGATGACG 1 chrI:8797762-8797842 ( 42) TGATGACG 1 chrIV:13682915-13682995 ( 68) TGATAGCG 1 chrI:11786090-11786170 ( 32) TGATTAGA 1 chrIII:1622532-1622612 ( 66) TGATTAGA 1 chrV:6365701-6365781 ( 15) TGAAAACA 1 chrIV:11809196-11809276 ( 51) TGAAAACA 1 chrV:9504631-9504711 ( 32) AGATACGA 1 chrIII:2647637-2647717 ( 21) TGATGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.01665 E= 6.4e-038 -187 -1321 -1321 150 -1321 -1321 247 -1321 170 -1321 -1321 -1321 -287 -1321 -1321 157 159 -1321 -178 -394 138 -157 -210 -177 -1321 49 190 -235 99 -184 80 -394 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 6.4e-038 0.084211 0.000000 0.000000 0.915789 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.042105 0.000000 0.000000 0.957895 0.926316 0.000000 0.052632 0.021053 0.800000 0.063158 0.042105 0.094737 0.000000 0.263158 0.673684 0.063158 0.610526 0.052632 0.315789 0.021053 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGR MEME-1 regular expression -------------------------------------------------------------------------------- TGATAA[GC][AG] -------------------------------------------------------------------------------- Time 5.52 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTTATCA MEME-2 width = 8 sites = 70 llr = 565 E-value = 5.0e-032 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:::a::9 pos.-specific C 28::::a: probability G :1:::::: matrix T 71a9:a:1 bits 2.5 * 2.2 * 2.0 * 1.7 ** Relative 1.5 ** *** Entropy 1.2 ******* (11.6 bits) 1.0 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTTATCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:5939253-5939333 35 3.65e-05 CTTGTGTCTA TCTTATCA CAAAACCAGT chrII:3556746-3556826 24 3.65e-05 CTCCTCCTCA TCTTATCA CATATCTTTC chrII:11056952-11057032 41 3.65e-05 CAAATGACTA TCTTATCA GTTTCGACTC chrV:14135206-14135286 48 3.65e-05 TTCCATTACT TCTTATCA TACAATTTTT chrIV:9376675-9376755 19 3.65e-05 AATCTTATAA TCTTATCA TTCGTCTGGG chrIII:3435383-3435463 55 3.65e-05 TTCTCAGTTT TCTTATCA TATCAGTTAG chrX:10168711-10168791 49 3.65e-05 CTTTGGTTGT TCTTATCA CCCTTATCAG chrII:1850998-1851078 39 3.65e-05 TTGTTGGTTC TCTTATCA AGAAGCTTGT chrIII:2647637-2647717 54 3.65e-05 CCAGTCTTTT TCTTATCA ATAAATAGTT chrV:12161093-12161173 39 3.65e-05 TTATCAGATA TCTTATCA TCATTTAACA chrV:11220587-11220667 8 3.65e-05 AGTCTAA TCTTATCA ATTCTTGTGT chrII:6887736-6887816 36 3.65e-05 CTCATCGTTT TCTTATCA CCTCCCATAA chrI:11196658-11196738 16 3.65e-05 TCTATCTATC TCTTATCA TTACCCCTGA chrII:1503791-1503871 37 3.65e-05 ACGTATTATT TCTTATCA CAAAACTTTT chrX:11015088-11015168 36 3.65e-05 CTTCTCTTTT TCTTATCA CTCTTTTCTA chrIV:4587687-4587767 18 3.65e-05 CTTATCAGAT TCTTATCA AATTATACTA chrI:4672782-4672862 68 3.65e-05 ACGGGTGTCT TCTTATCA GTTTC chrI:2773929-2774009 18 3.65e-05 CCTTCATCTC TCTTATCA AAAACTACAA chrX:5605243-5605323 61 3.65e-05 AATCATATAT TCTTATCA GTGCGGCTAT chrIV:4032493-4032573 38 3.65e-05 AAAAATCTTA TCTTATCA GAGAAACATC chrII:900868-900948 22 3.65e-05 GGATTTCTTA TCTTATCA GTGACTTATT chrX:14907534-14907614 5 3.65e-05 TTTA TCTTATCA AAATACAAAA chrII:14597958-14598038 32 3.65e-05 CCACCGCTTA TCTTATCA CTTTTCTGTT chrII:2399978-2400058 65 3.65e-05 TCTAGTCTTA TCTTATCA TGTTTCAA chrX:11032532-11032612 44 3.65e-05 TACGGGATAA TCTTATCA TGATTGGCAA chrX:13937504-13937584 46 3.65e-05 TAGTTAACAA TCTTATCA CGACCCATCA chrV:13935587-13935667 59 3.65e-05 AGTTATCTAA TCTTATCA TATTATCAAA chrX:13112821-13112901 24 3.65e-05 tgttatctta tcttatcA ATTGAAATTT chrV:12086399-12086479 18 3.65e-05 TTTACCACTA TCTTATCA TACAGGTGGT chrIV:9755858-9755938 22 5.77e-05 TCCATTTCTT CCTTATCA CTCTCTAACA chrIII:4413275-4413355 62 5.77e-05 ACTTTTTGTT CCTTATCA AACCCAAATA chrIV:7985878-7985958 4 5.77e-05 CAA CCTTATCA TCACTTTTAT chrIV:8450694-8450774 40 5.77e-05 TACTATATCA CCTTATCA TCATTACGTC chrX:10172335-10172415 42 5.77e-05 ATGTCACTGT CCTTATCA CTCGCTCTTT chrI:9084248-9084328 15 5.77e-05 ATCAGTATCT CCTTATCA CCCTCACTTA chrX:2567859-2567939 50 5.77e-05 TGTTAAGTTA CCTTATCA ACGATTGTGT chrIII:5096894-5096974 52 9.25e-05 GAACTTTCGA ACTTATCA TTCATTGATA chrIV:14468245-14468325 7 9.25e-05 CCAGTC ACTTATCA CATATCAACT chrV:19613256-19613336 45 9.25e-05 ACATTTCAAA ACTTATCA CGTTGATAAC chrX:500371-500451 32 9.25e-05 ACAAAAAGAG ACTTATCA ACAATCGGTT chrIII:7199686-7199766 72 9.25e-05 ATTTTTAGAG ACTTATCA A chrI:6263570-6263650 8 9.25e-05 GTTTCGA ACTTATCA TTTATCACTT chrX:5714413-5714493 52 1.28e-04 ACGTATTATT TGTTATCA TTTACCCCGA chrIV:15395386-15395466 15 1.28e-04 AAGATGAAAA TGTTATCA GACTTTTTGC chrX:6081935-6082015 17 1.28e-04 AAAAAGAAGA TGTTATCA TTAGTTGGAA chrII:4562717-4562797 43 2.09e-04 GGGAGTGATA TCTTATCT CTTTTATTAT chrX:5854571-5854651 54 2.09e-04 CAGTTTCTCT TCTTCTCA GTTTTGTTAT chrIV:12711153-12711233 44 2.09e-04 tctcctgtaa tcttatct catttgtatc chrIV:302896-302976 44 2.09e-04 atccatatca gcttatcA TTAAAAGGGA chrI:8797762-8797842 2 2.09e-04 A TCTTATCT TTCATTCTTT chrI:7404858-7404938 7 2.09e-04 TTACCA TCTTATCT TCAGAATGAT chrI:6951192-6951272 38 2.09e-04 TCTCAACGCA TCTTCTCA TTCAATGCAT chrII:9709048-9709128 7 2.09e-04 GAAGTT GCTTATCA ATTCAAAACT chrIV:6652821-6652901 13 2.09e-04 ACTGTTACAT TCTTATCT CAATTCACTT chrX:3495886-3495966 35 2.09e-04 AAAAACCTTA TCTTCTCA GTTTGTGTTG chrIII:13393758-13393838 42 2.29e-04 AATCTGTGTC TCTGATCA CTCGTTGATA chrI:14657233-14657313 54 2.29e-04 GATAAGATAA TCTGATCA ATCTTCTTTT chrIV:6657709-6657789 55 2.92e-04 TCTTCTTTCA TTTTATCA CCTTTTTCCA chrI:10514027-10514107 30 2.92e-04 TTATCTCTGA TTTTATCA AGAAAAACGG chrI:7056160-7056240 45 2.92e-04 TCCTGCGCTT TTTTATCA ACTATTTCGC chrIV:11809196-11809276 9 2.92e-04 CTTTTATC TTTTATCA ACATGTCCAT chrI:6580606-6580686 13 3.27e-04 ATCTCCCTCA TCATATCA CTCTTCCGGC chrV:4630455-4630535 1 3.27e-04 . TCATATCA TCAACACAAG chrI:2761039-2761119 11 3.47e-04 TTATCATCAT CGTTATCA TCCGCCGCTA chrIII:154328-154408 18 3.47e-04 GACCCCGCAT CGTTATCA TATTACACAA chrX:16558264-16558344 68 3.47e-04 CCCCCTCCTT CGTTATCA TGATC chrIV:14870036-14870116 69 3.82e-04 AAAGGATGCC TCTAATCA TTTG chrV:14657108-14657188 37 3.82e-04 TCGTAAAATG TCTAATCA TCACGTGGTG chrV:11508969-11509049 8 4.66e-04 CCCATTT CTTTATCA TTGCAAAAAT chrII:9032077-9032157 16 4.86e-04 TATCCTTCTA CCATATCA TCCGTCATCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:5939253-5939333 3.6e-05 34_[+2]_38 chrII:3556746-3556826 3.6e-05 23_[+2]_49 chrII:11056952-11057032 3.6e-05 40_[+2]_32 chrV:14135206-14135286 3.6e-05 47_[+2]_25 chrIV:9376675-9376755 3.6e-05 18_[+2]_54 chrIII:3435383-3435463 3.6e-05 54_[+2]_18 chrX:10168711-10168791 3.6e-05 48_[+2]_24 chrII:1850998-1851078 3.6e-05 38_[+2]_34 chrIII:2647637-2647717 3.6e-05 53_[+2]_19 chrV:12161093-12161173 3.6e-05 38_[+2]_34 chrV:11220587-11220667 3.6e-05 7_[+2]_65 chrII:6887736-6887816 3.6e-05 35_[+2]_37 chrI:11196658-11196738 3.6e-05 15_[+2]_57 chrII:1503791-1503871 3.6e-05 36_[+2]_36 chrX:11015088-11015168 3.6e-05 35_[+2]_37 chrIV:4587687-4587767 3.6e-05 17_[+2]_55 chrI:4672782-4672862 3.6e-05 67_[+2]_5 chrI:2773929-2774009 3.6e-05 17_[+2]_55 chrX:5605243-5605323 3.6e-05 60_[+2]_12 chrIV:4032493-4032573 3.6e-05 37_[+2]_35 chrII:900868-900948 3.6e-05 21_[+2]_51 chrX:14907534-14907614 3.6e-05 4_[+2]_68 chrII:14597958-14598038 3.6e-05 31_[+2]_41 chrII:2399978-2400058 3.6e-05 64_[+2]_8 chrX:11032532-11032612 3.6e-05 43_[+2]_29 chrX:13937504-13937584 3.6e-05 45_[+2]_27 chrV:13935587-13935667 3.6e-05 58_[+2]_14 chrX:13112821-13112901 3.6e-05 23_[+2]_49 chrV:12086399-12086479 3.6e-05 17_[+2]_55 chrIV:9755858-9755938 5.8e-05 21_[+2]_51 chrIII:4413275-4413355 5.8e-05 61_[+2]_11 chrIV:7985878-7985958 5.8e-05 3_[+2]_69 chrIV:8450694-8450774 5.8e-05 39_[+2]_33 chrX:10172335-10172415 5.8e-05 41_[+2]_31 chrI:9084248-9084328 5.8e-05 14_[+2]_58 chrX:2567859-2567939 5.8e-05 49_[+2]_23 chrIII:5096894-5096974 9.3e-05 51_[+2]_21 chrIV:14468245-14468325 9.3e-05 6_[+2]_66 chrV:19613256-19613336 9.3e-05 44_[+2]_28 chrX:500371-500451 9.3e-05 31_[+2]_41 chrIII:7199686-7199766 9.3e-05 71_[+2]_1 chrI:6263570-6263650 9.3e-05 7_[+2]_65 chrX:5714413-5714493 0.00013 51_[+2]_21 chrIV:15395386-15395466 0.00013 14_[+2]_58 chrX:6081935-6082015 0.00013 16_[+2]_56 chrII:4562717-4562797 0.00021 42_[+2]_30 chrX:5854571-5854651 0.00021 53_[+2]_19 chrIV:12711153-12711233 0.00021 43_[+2]_29 chrIV:302896-302976 0.00021 43_[+2]_29 chrI:8797762-8797842 0.00021 1_[+2]_71 chrI:7404858-7404938 0.00021 6_[+2]_66 chrI:6951192-6951272 0.00021 37_[+2]_35 chrII:9709048-9709128 0.00021 6_[+2]_66 chrIV:6652821-6652901 0.00021 12_[+2]_60 chrX:3495886-3495966 0.00021 34_[+2]_38 chrIII:13393758-13393838 0.00023 41_[+2]_31 chrI:14657233-14657313 0.00023 53_[+2]_19 chrIV:6657709-6657789 0.00029 54_[+2]_18 chrI:10514027-10514107 0.00029 29_[+2]_43 chrI:7056160-7056240 0.00029 44_[+2]_28 chrIV:11809196-11809276 0.00029 8_[+2]_64 chrI:6580606-6580686 0.00033 12_[+2]_60 chrV:4630455-4630535 0.00033 [+2]_72 chrI:2761039-2761119 0.00035 10_[+2]_62 chrIII:154328-154408 0.00035 17_[+2]_55 chrX:16558264-16558344 0.00035 67_[+2]_5 chrIV:14870036-14870116 0.00038 68_[+2]_4 chrV:14657108-14657188 0.00038 36_[+2]_36 chrV:11508969-11509049 0.00047 7_[+2]_65 chrII:9032077-9032157 0.00049 15_[+2]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTTATCA width=8 seqs=70 chrIV:5939253-5939333 ( 35) TCTTATCA 1 chrII:3556746-3556826 ( 24) TCTTATCA 1 chrII:11056952-11057032 ( 41) TCTTATCA 1 chrV:14135206-14135286 ( 48) TCTTATCA 1 chrIV:9376675-9376755 ( 19) TCTTATCA 1 chrIII:3435383-3435463 ( 55) TCTTATCA 1 chrX:10168711-10168791 ( 49) TCTTATCA 1 chrII:1850998-1851078 ( 39) TCTTATCA 1 chrIII:2647637-2647717 ( 54) TCTTATCA 1 chrV:12161093-12161173 ( 39) TCTTATCA 1 chrV:11220587-11220667 ( 8) TCTTATCA 1 chrII:6887736-6887816 ( 36) TCTTATCA 1 chrI:11196658-11196738 ( 16) TCTTATCA 1 chrII:1503791-1503871 ( 37) TCTTATCA 1 chrX:11015088-11015168 ( 36) TCTTATCA 1 chrIV:4587687-4587767 ( 18) TCTTATCA 1 chrI:4672782-4672862 ( 68) TCTTATCA 1 chrI:2773929-2774009 ( 18) TCTTATCA 1 chrX:5605243-5605323 ( 61) TCTTATCA 1 chrIV:4032493-4032573 ( 38) TCTTATCA 1 chrII:900868-900948 ( 22) TCTTATCA 1 chrX:14907534-14907614 ( 5) TCTTATCA 1 chrII:14597958-14598038 ( 32) TCTTATCA 1 chrII:2399978-2400058 ( 65) TCTTATCA 1 chrX:11032532-11032612 ( 44) TCTTATCA 1 chrX:13937504-13937584 ( 46) TCTTATCA 1 chrV:13935587-13935667 ( 59) TCTTATCA 1 chrX:13112821-13112901 ( 24) TCTTATCA 1 chrV:12086399-12086479 ( 18) TCTTATCA 1 chrIV:9755858-9755938 ( 22) CCTTATCA 1 chrIII:4413275-4413355 ( 62) CCTTATCA 1 chrIV:7985878-7985958 ( 4) CCTTATCA 1 chrIV:8450694-8450774 ( 40) CCTTATCA 1 chrX:10172335-10172415 ( 42) CCTTATCA 1 chrI:9084248-9084328 ( 15) CCTTATCA 1 chrX:2567859-2567939 ( 50) CCTTATCA 1 chrIII:5096894-5096974 ( 52) ACTTATCA 1 chrIV:14468245-14468325 ( 7) ACTTATCA 1 chrV:19613256-19613336 ( 45) ACTTATCA 1 chrX:500371-500451 ( 32) ACTTATCA 1 chrIII:7199686-7199766 ( 72) ACTTATCA 1 chrI:6263570-6263650 ( 8) ACTTATCA 1 chrX:5714413-5714493 ( 52) TGTTATCA 1 chrIV:15395386-15395466 ( 15) TGTTATCA 1 chrX:6081935-6082015 ( 17) TGTTATCA 1 chrII:4562717-4562797 ( 43) TCTTATCT 1 chrX:5854571-5854651 ( 54) TCTTCTCA 1 chrIV:12711153-12711233 ( 44) TCTTATCT 1 chrIV:302896-302976 ( 44) GCTTATCA 1 chrI:8797762-8797842 ( 2) TCTTATCT 1 chrI:7404858-7404938 ( 7) TCTTATCT 1 chrI:6951192-6951272 ( 38) TCTTCTCA 1 chrII:9709048-9709128 ( 7) GCTTATCA 1 chrIV:6652821-6652901 ( 13) TCTTATCT 1 chrX:3495886-3495966 ( 35) TCTTCTCA 1 chrIII:13393758-13393838 ( 42) TCTGATCA 1 chrI:14657233-14657313 ( 54) TCTGATCA 1 chrIV:6657709-6657789 ( 55) TTTTATCA 1 chrI:10514027-10514107 ( 30) TTTTATCA 1 chrI:7056160-7056240 ( 45) TTTTATCA 1 chrIV:11809196-11809276 ( 9) TTTTATCA 1 chrI:6580606-6580686 ( 13) TCATATCA 1 chrV:4630455-4630535 ( 1) TCATATCA 1 chrI:2761039-2761119 ( 11) CGTTATCA 1 chrIII:154328-154408 ( 18) CGTTATCA 1 chrX:16558264-16558344 ( 68) CGTTATCA 1 chrIV:14870036-14870116 ( 69) TCTAATCA 1 chrV:14657108-14657188 ( 37) TCTAATCA 1 chrV:11508969-11509049 ( 8) CTTTATCA 1 chrII:9032077-9032157 ( 16) CCATATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.84505 E= 5.0e-032 -184 -13 -266 114 -1277 216 -108 -218 -284 -1277 -1277 157 -343 -1277 -266 154 164 -213 -1277 -1277 -1277 -1277 -1277 163 -1277 241 -1277 -1277 159 -1277 -1277 -218 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 5.0e-032 0.085714 0.171429 0.028571 0.714286 0.000000 0.842857 0.085714 0.071429 0.042857 0.000000 0.000000 0.957143 0.028571 0.000000 0.028571 0.942857 0.957143 0.042857 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.928571 0.000000 0.000000 0.071429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 regular expression -------------------------------------------------------------------------------- TCTTATCA -------------------------------------------------------------------------------- Time 10.15 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGAGAVR MEME-3 width = 8 sites = 38 llr = 324 E-value = 4.7e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAGAVR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 29:a:a45 pos.-specific C ::::::2: probability G 81a:a:25 matrix T ::::::2: bits 2.5 * * 2.2 * * 2.0 * * 1.7 **** Relative 1.5 * **** Entropy 1.2 ****** (12.3 bits) 1.0 ****** * 0.7 ****** * 0.5 ****** * 0.2 ****** * 0.0 -------- Multilevel GAGAGAAA consensus A CG sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAVR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:13682915-13682995 52 1.56e-05 ATCTCTCACC GAGAGAAG ATATTATTTG chrX:8752707-8752787 16 1.56e-05 GAGATACGAT GAGAGAAG AGAAGAAACA chrII:9752413-9752493 49 1.56e-05 ACATATGATA GAGAGACG CAGAGAAGTA chrIII:15397-15477 40 1.56e-05 ACTGGAAACT GAGAGACG TAGAGACGCA chrII:12237745-12237825 25 1.56e-05 GGGATAACCG GAGAGACG GCAGACAGAA chrI:6999640-6999720 42 1.56e-05 GAAATAAACA GAGAGACG AACCGACGGT chrII:4749728-4749808 56 1.56e-05 aatgatcaat gaGAGAAG AGAGTTGGCT chrV:3979977-3980057 50 2.12e-05 GTGTTGGAGT GAGAGAGG GAGAAGAAGG chrX:7590865-7590945 67 2.12e-05 CAATCACACA GAGAGAGG GGGCAC chrIV:14468245-14468325 58 4.77e-05 AAGAGAGATA GAGAGAAA AGGGAGTAAA chrIII:7489296-7489376 6 4.77e-05 GCAAT GAGAGAAA ACGAGGGCCC chrV:7837098-7837178 39 4.77e-05 GGGTATCAAT GAGAGAAA TAGGGAGATG chrI:10355602-10355682 66 4.77e-05 GAGAACGAGG GAGAGAAA TTGCGGA chrI:6886203-6886283 29 4.77e-05 TTATTCCACG GAGAGAAA CAGAGACACA chrIV:7651291-7651371 49 4.77e-05 ACGCAAAGAA GAGAGAAA ACGACGAAAA chrI:2761039-2761119 56 5.74e-05 TAGACGCAGA GAGAGAGA GAACACGACG chrX:14709788-14709868 71 5.74e-05 TAGGAACTTT GAGAGAGA TG chrIV:2279910-2279990 69 5.74e-05 cgaaacagaa gagagaga gaaa chrV:10571711-10571791 56 5.74e-05 GGAAAAAAGA GAGAGAGA TAGGGATAGA chrI:11782457-11782537 29 5.74e-05 CTGTGTAGGC GAGAGAGA TATCCATCTC chrI:7116815-7116895 51 5.74e-05 TTGACAGTGA GAGAGAGA CATAGAGATA chrV:12161093-12161173 63 6.75e-05 AACATGTCTT GAGAGATG ACCCATGATA chrV:10557239-10557319 47 7.66e-05 TGATTCGACC GGGAGACG GCGATGTCAT chrIII:2647637-2647717 29 7.66e-05 GTTGATGCGG GGGAGAAG ATTGCAACCA chrX:9608294-9608374 52 7.66e-05 GAAAAAATGG GGGAGAAG TGAAAGCGCT chrII:6887736-6887816 63 9.72e-05 AGGTCATAAC GAGAGATA ATGTGAAATT chrII:2805708-2805788 29 9.72e-05 GGTCATCGAT GAGAGATA GACCCCTAGA chrIV:5140139-5140219 4 9.72e-05 TAA GAGAGATA TTTTTGAAGG chrII:13293102-13293182 58 1.45e-04 AAGTTAGAGA AAGAGACG GAGGGGGTAC chrI:8057812-8057892 40 1.45e-04 CAAGGAGAAT AAGAGACG GTTTCTATCT chrV:12011853-12011933 39 1.45e-04 AAAGTGATAG AAGAGAAG AAAAAGAAAT chrIII:11727154-11727234 30 1.45e-04 ACATCTATCG AAGAGACG CAGAGAAATC chrV:13490024-13490104 46 1.61e-04 GCGGAGCTTC GGGAGATG CTGCTGCAGA chrI:1689039-1689119 18 1.61e-04 CGTCGGAAAC GGGAGATG ACTATTTTGT chrV:13173892-13173972 60 2.06e-04 GCCGCCGCGT AAGAGAAA GTAGTGAGAT chrII:6989611-6989691 32 2.06e-04 AGTGATAAAA AAGAGAAA AAAGAAGGCT chrII:12053636-12053716 70 2.06e-04 CCAGAGAAAC AAGAGAAA TCG chrIV:11092819-11092899 70 2.06e-04 ATAAGAAGAT AAGAGACA GTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAVR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:13682915-13682995 1.6e-05 51_[+3]_21 chrX:8752707-8752787 1.6e-05 15_[+3]_57 chrII:9752413-9752493 1.6e-05 48_[+3]_24 chrIII:15397-15477 1.6e-05 39_[+3]_33 chrII:12237745-12237825 1.6e-05 24_[+3]_48 chrI:6999640-6999720 1.6e-05 41_[+3]_31 chrII:4749728-4749808 1.6e-05 55_[+3]_17 chrV:3979977-3980057 2.1e-05 49_[+3]_23 chrX:7590865-7590945 2.1e-05 66_[+3]_6 chrIV:14468245-14468325 4.8e-05 57_[+3]_15 chrIII:7489296-7489376 4.8e-05 5_[+3]_67 chrV:7837098-7837178 4.8e-05 38_[+3]_34 chrI:10355602-10355682 4.8e-05 65_[+3]_7 chrI:6886203-6886283 4.8e-05 28_[+3]_44 chrIV:7651291-7651371 4.8e-05 48_[+3]_24 chrI:2761039-2761119 5.7e-05 55_[+3]_17 chrX:14709788-14709868 5.7e-05 70_[+3]_2 chrIV:2279910-2279990 5.7e-05 68_[+3]_4 chrV:10571711-10571791 5.7e-05 55_[+3]_17 chrI:11782457-11782537 5.7e-05 28_[+3]_44 chrI:7116815-7116895 5.7e-05 50_[+3]_22 chrV:12161093-12161173 6.7e-05 62_[+3]_10 chrV:10557239-10557319 7.7e-05 46_[+3]_26 chrIII:2647637-2647717 7.7e-05 28_[+3]_44 chrX:9608294-9608374 7.7e-05 51_[+3]_21 chrII:6887736-6887816 9.7e-05 62_[+3]_10 chrII:2805708-2805788 9.7e-05 28_[+3]_44 chrIV:5140139-5140219 9.7e-05 3_[+3]_69 chrII:13293102-13293182 0.00014 57_[+3]_15 chrI:8057812-8057892 0.00014 39_[+3]_33 chrV:12011853-12011933 0.00014 38_[+3]_34 chrIII:11727154-11727234 0.00014 29_[+3]_43 chrV:13490024-13490104 0.00016 45_[+3]_27 chrI:1689039-1689119 0.00016 17_[+3]_55 chrV:13173892-13173972 0.00021 59_[+3]_13 chrII:6989611-6989691 0.00021 31_[+3]_41 chrII:12053636-12053716 0.00021 69_[+3]_3 chrIV:11092819-11092899 0.00021 69_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAVR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAGAVR width=8 seqs=38 chrIV:13682915-13682995 ( 52) GAGAGAAG 1 chrX:8752707-8752787 ( 16) GAGAGAAG 1 chrII:9752413-9752493 ( 49) GAGAGACG 1 chrIII:15397-15477 ( 40) GAGAGACG 1 chrII:12237745-12237825 ( 25) GAGAGACG 1 chrI:6999640-6999720 ( 42) GAGAGACG 1 chrII:4749728-4749808 ( 56) GAGAGAAG 1 chrV:3979977-3980057 ( 50) GAGAGAGG 1 chrX:7590865-7590945 ( 67) GAGAGAGG 1 chrIV:14468245-14468325 ( 58) GAGAGAAA 1 chrIII:7489296-7489376 ( 6) GAGAGAAA 1 chrV:7837098-7837178 ( 39) GAGAGAAA 1 chrI:10355602-10355682 ( 66) GAGAGAAA 1 chrI:6886203-6886283 ( 29) GAGAGAAA 1 chrIV:7651291-7651371 ( 49) GAGAGAAA 1 chrI:2761039-2761119 ( 56) GAGAGAGA 1 chrX:14709788-14709868 ( 71) GAGAGAGA 1 chrIV:2279910-2279990 ( 69) GAGAGAGA 1 chrV:10571711-10571791 ( 56) GAGAGAGA 1 chrI:11782457-11782537 ( 29) GAGAGAGA 1 chrI:7116815-7116895 ( 51) GAGAGAGA 1 chrV:12161093-12161173 ( 63) GAGAGATG 1 chrV:10557239-10557319 ( 47) GGGAGACG 1 chrIII:2647637-2647717 ( 29) GGGAGAAG 1 chrX:9608294-9608374 ( 52) GGGAGAAG 1 chrII:6887736-6887816 ( 63) GAGAGATA 1 chrII:2805708-2805788 ( 29) GAGAGATA 1 chrIV:5140139-5140219 ( 4) GAGAGATA 1 chrII:13293102-13293182 ( 58) AAGAGACG 1 chrI:8057812-8057892 ( 40) AAGAGACG 1 chrV:12011853-12011933 ( 39) AAGAGAAG 1 chrIII:11727154-11727234 ( 30) AAGAGACG 1 chrV:13490024-13490104 ( 46) GGGAGATG 1 chrI:1689039-1689119 ( 18) GGGAGATG 1 chrV:13173892-13173972 ( 60) AAGAGAAA 1 chrII:6989611-6989691 ( 32) AAGAGAAA 1 chrII:12053636-12053716 ( 70) AAGAGAAA 1 chrIV:11092819-11092899 ( 70) AAGAGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAVR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7218 E= 4.7e-009 -55 -1189 212 -1189 150 -1189 -46 -1189 -1189 -1189 247 -1189 170 -1189 -1189 -1189 -1189 -1189 247 -1189 170 -1189 -1189 -1189 36 33 22 -103 70 -1189 147 -1189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAVR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 4.7e-009 0.210526 0.000000 0.789474 0.000000 0.868421 0.000000 0.131579 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.394737 0.236842 0.210526 0.157895 0.500000 0.000000 0.500000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAVR MEME-3 regular expression -------------------------------------------------------------------------------- [GA]AGAGA[ACG][AG] -------------------------------------------------------------------------------- Time 15.15 secs. ******************************************************************************** ******************************************************************************** MOTIF TYTYYYTC MEME-4 width = 8 sites = 51 llr = 382 E-value = 1.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTYYYTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :62445:a probability G :::::::: matrix T a48665a: bits 2.5 * 2.2 * 2.0 * 1.7 * ** Relative 1.5 * ** Entropy 1.2 * ** (10.8 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTTTTTC consensus T CCC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYYYTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6580606-6580686 4 7.91e-06 ACA TCTCCCTC ATCATATCAC chrIII:154328-154408 59 2.15e-05 GATAACCCGT TCTTCCTC ATACTAATCA chrIII:3480400-3480480 58 3.51e-05 TTGAATCCTC TCTCTCTC TTTCTCATAT chrI:11786090-11786170 9 3.51e-05 tctctctc tctctctc tTCCTTTCTT chrIV:12711153-12711233 25 3.51e-05 cttctctttc tctctctc ttctcctgta chrIII:14846-14926 67 3.51e-05 TTTTTTTGCT TCTCTCTC ATTTTT chrIII:2647637-2647717 72 3.51e-05 ATAAATAGTT TCTCTCTC C chrX:5605243-5605323 33 3.51e-05 TTAGTTTAAC TCTCTCTC TTAGTTCCTT chrX:500371-500451 63 7.21e-05 TCTTTCATTC TCTCCTTC TTGCCAACCG chrI:7114888-7114968 7 7.21e-05 TGCTGG TCTTTCTC TATTAAATCT chrII:11502079-11502159 54 7.21e-05 TTTTCTCGAA TCTCCTTC TTGCCGAAAG chrX:10686615-10686695 72 9.54e-05 TTTCTCATCG TCTTCTTC C chrV:3979977-3980057 9 9.54e-05 GTGGTTGA TCTTCTTC GTGACCGCGT chrIV:9755858-9755938 62 9.54e-05 TCGATCCATA TCTTCTTC TCATATCATT chrIV:8464317-8464397 18 9.54e-05 ATCATCTTTA TCTTCTTC TCCTTTTTTT chrIV:2279910-2279990 18 9.54e-05 GAATCGGTTA TCTTCTTC TTCTTCTATT chrIII:7566255-7566335 49 9.54e-05 TCAttctacg tcttcttc ttctacttct chrIV:11809196-11809276 34 1.19e-04 CATTCTTTGA TCTCTTTC TTCTTTATTT chrIII:13393758-13393838 11 1.32e-04 TCCATCAAGT TTTCCCTC ATTTAACATT chrX:5854571-5854651 20 1.77e-04 TGTTTTTTAA TCTTTTTC AAAACAGTTT chrX:16558264-16558344 57 1.77e-04 CAGCTGATTA TCCCCCTC CTTCGTTATC chrV:14499241-14499321 5 1.77e-04 AAGG TCTTTTTC ATCTTTCCAC chrX:504196-504276 1 1.77e-04 . TCTTTTTC TCTCCATTGC chrX:16263395-16263475 14 1.77e-04 TTTTATTCCT TCTTTTTC TCCTACATAC chrX:10172335-10172415 69 1.77e-04 TTTTCACTTC TCTTTTTC CAAA chrX:3495886-3495966 60 1.77e-04 TTGTTTCTTC TCTTTTTC TGGGGTATCC chrV:11148025-11148105 73 2.00e-04 TACAATCTCA TTTTCCTC chrII:6989611-6989691 49 2.00e-04 AAAAGAAGGC TTTTCCTC TTTGTATTCT chrV:4630455-4630535 53 2.00e-04 TAATGTTTTT TTTTCCTC TTGTTATCGC chrII:3556746-3556826 15 2.32e-04 TGATAACATC TCCTCCTC ATCTTATCAC chrV:11508969-11509049 29 2.32e-04 CAAAAATTAA TTTCTCTC GTCATCTCTC chrII:13150118-13150198 17 2.32e-04 ACATGTTCCT TTTCTCTC TTTTCACATA chrIV:5339433-5339513 34 2.32e-04 TTTGGTTTTT TTTCTCTC TGTTTTATCT chrI:5883885-5883965 39 2.32e-04 ATGTGTCCAC TCCTCCTC AGTAGTAGAA chrII:14597958-14598038 12 2.32e-04 TGCACGTAAT TTTCTCTC CCCCACCGCT chrIV:9716630-9716710 15 3.03e-04 tcatttttcc tttccttC ATATCTATGT chrII:1503791-1503871 53 3.03e-04 CACAAAACTT TTTTTCTC TGCGTCTCTA chrX:6081935-6082015 54 3.03e-04 TCGTTATCTT TTTTTCTC GTTGTGTCTT chrI:6951192-6951272 22 3.65e-04 TTACTGTTCC TTTTCTTC TCAACGCATC chrX:11032532-11032612 16 3.65e-04 ACATCTTTGA TTTTCTTC AGTGATAAGA chrI:10157533-10157613 30 4.19e-04 TTTAGCGAAT TTTCTTTC AAAAAACGTG chrI:7404858-7404938 37 4.32e-04 CGTGACGTCA TCCCTTTC CGTACTCTCC chrX:5714413-5714493 1 5.09e-04 . TTTTTTTC TTATTTCATC chrIV:1866955-1867035 59 5.09e-04 TTTCACTGTT TTTTTTTC ACTTTTTTCA chrX:10168711-10168791 5 5.09e-04 CTTT TTTTTTTC AAAACCGTTC chrI:7115798-7115878 62 5.09e-04 CTATTTGGGA TTTTTTTC CCAATACTAT chrV:10012781-10012861 20 5.09e-04 AATTAGCCGT TTCCCCTC ACAATTgata chrIV:16015916-16015996 32 5.32e-04 ATTGGGTCAA TCCTTTTC TCCCTTTTCA chrII:13675373-13675453 38 5.46e-04 CGAATCGCAC TTCTCCTC TCGGGTGTAG chrI:9333192-9333272 15 5.60e-04 CGGGTTGTGA TTCCTCTC AACATTTCAA chrV:14135206-14135286 17 6.83e-04 AATTTCCCAT TTCTTTTC CTGTTCCTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYYYTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6580606-6580686 7.9e-06 3_[+4]_69 chrIII:154328-154408 2.2e-05 58_[+4]_14 chrIII:3480400-3480480 3.5e-05 57_[+4]_15 chrI:11786090-11786170 3.5e-05 8_[+4]_64 chrIV:12711153-12711233 3.5e-05 24_[+4]_48 chrIII:14846-14926 3.5e-05 66_[+4]_6 chrIII:2647637-2647717 3.5e-05 71_[+4]_1 chrX:5605243-5605323 3.5e-05 32_[+4]_40 chrX:500371-500451 7.2e-05 62_[+4]_10 chrI:7114888-7114968 7.2e-05 6_[+4]_66 chrII:11502079-11502159 7.2e-05 53_[+4]_19 chrX:10686615-10686695 9.5e-05 71_[+4]_1 chrV:3979977-3980057 9.5e-05 8_[+4]_64 chrIV:9755858-9755938 9.5e-05 61_[+4]_11 chrIV:8464317-8464397 9.5e-05 17_[+4]_55 chrIV:2279910-2279990 9.5e-05 17_[+4]_55 chrIII:7566255-7566335 9.5e-05 48_[+4]_24 chrIV:11809196-11809276 0.00012 33_[+4]_39 chrIII:13393758-13393838 0.00013 10_[+4]_62 chrX:5854571-5854651 0.00018 19_[+4]_53 chrX:16558264-16558344 0.00018 56_[+4]_16 chrV:14499241-14499321 0.00018 4_[+4]_68 chrX:504196-504276 0.00018 [+4]_72 chrX:16263395-16263475 0.00018 13_[+4]_59 chrX:10172335-10172415 0.00018 68_[+4]_4 chrX:3495886-3495966 0.00018 59_[+4]_13 chrV:11148025-11148105 0.0002 72_[+4] chrII:6989611-6989691 0.0002 48_[+4]_24 chrV:4630455-4630535 0.0002 52_[+4]_20 chrII:3556746-3556826 0.00023 14_[+4]_58 chrV:11508969-11509049 0.00023 28_[+4]_44 chrII:13150118-13150198 0.00023 16_[+4]_56 chrIV:5339433-5339513 0.00023 33_[+4]_39 chrI:5883885-5883965 0.00023 38_[+4]_34 chrII:14597958-14598038 0.00023 11_[+4]_61 chrIV:9716630-9716710 0.0003 14_[+4]_58 chrII:1503791-1503871 0.0003 52_[+4]_20 chrX:6081935-6082015 0.0003 53_[+4]_19 chrI:6951192-6951272 0.00036 21_[+4]_51 chrX:11032532-11032612 0.00036 15_[+4]_57 chrI:10157533-10157613 0.00042 29_[+4]_43 chrI:7404858-7404938 0.00043 36_[+4]_36 chrX:5714413-5714493 0.00051 [+4]_72 chrIV:1866955-1867035 0.00051 58_[+4]_14 chrX:10168711-10168791 0.00051 4_[+4]_68 chrI:7115798-7115878 0.00051 61_[+4]_11 chrV:10012781-10012861 0.00051 19_[+4]_53 chrIV:16015916-16015996 0.00053 31_[+4]_41 chrII:13675373-13675453 0.00055 37_[+4]_35 chrI:9333192-9333272 0.00056 14_[+4]_58 chrV:14135206-14135286 0.00068 16_[+4]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYYYTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTYYYTC width=8 seqs=51 chrI:6580606-6580686 ( 4) TCTCCCTC 1 chrIII:154328-154408 ( 59) TCTTCCTC 1 chrIII:3480400-3480480 ( 58) TCTCTCTC 1 chrI:11786090-11786170 ( 9) TCTCTCTC 1 chrIV:12711153-12711233 ( 25) TCTCTCTC 1 chrIII:14846-14926 ( 67) TCTCTCTC 1 chrIII:2647637-2647717 ( 72) TCTCTCTC 1 chrX:5605243-5605323 ( 33) TCTCTCTC 1 chrX:500371-500451 ( 63) TCTCCTTC 1 chrI:7114888-7114968 ( 7) TCTTTCTC 1 chrII:11502079-11502159 ( 54) TCTCCTTC 1 chrX:10686615-10686695 ( 72) TCTTCTTC 1 chrV:3979977-3980057 ( 9) TCTTCTTC 1 chrIV:9755858-9755938 ( 62) TCTTCTTC 1 chrIV:8464317-8464397 ( 18) TCTTCTTC 1 chrIV:2279910-2279990 ( 18) TCTTCTTC 1 chrIII:7566255-7566335 ( 49) TCTTCTTC 1 chrIV:11809196-11809276 ( 34) TCTCTTTC 1 chrIII:13393758-13393838 ( 11) TTTCCCTC 1 chrX:5854571-5854651 ( 20) TCTTTTTC 1 chrX:16558264-16558344 ( 57) TCCCCCTC 1 chrV:14499241-14499321 ( 5) TCTTTTTC 1 chrX:504196-504276 ( 1) TCTTTTTC 1 chrX:16263395-16263475 ( 14) TCTTTTTC 1 chrX:10172335-10172415 ( 69) TCTTTTTC 1 chrX:3495886-3495966 ( 60) TCTTTTTC 1 chrV:11148025-11148105 ( 73) TTTTCCTC 1 chrII:6989611-6989691 ( 49) TTTTCCTC 1 chrV:4630455-4630535 ( 53) TTTTCCTC 1 chrII:3556746-3556826 ( 15) TCCTCCTC 1 chrV:11508969-11509049 ( 29) TTTCTCTC 1 chrII:13150118-13150198 ( 17) TTTCTCTC 1 chrIV:5339433-5339513 ( 34) TTTCTCTC 1 chrI:5883885-5883965 ( 39) TCCTCCTC 1 chrII:14597958-14598038 ( 12) TTTCTCTC 1 chrIV:9716630-9716710 ( 15) TTTCCTTC 1 chrII:1503791-1503871 ( 53) TTTTTCTC 1 chrX:6081935-6082015 ( 54) TTTTTCTC 1 chrI:6951192-6951272 ( 22) TTTTCTTC 1 chrX:11032532-11032612 ( 16) TTTTCTTC 1 chrI:10157533-10157613 ( 30) TTTCTTTC 1 chrI:7404858-7404938 ( 37) TCCCTTTC 1 chrX:5714413-5714493 ( 1) TTTTTTTC 1 chrIV:1866955-1867035 ( 59) TTTTTTTC 1 chrX:10168711-10168791 ( 5) TTTTTTTC 1 chrI:7115798-7115878 ( 62) TTTTTTTC 1 chrV:10012781-10012861 ( 20) TTCCCCTC 1 chrIV:16015916-16015996 ( 32) TCCTTTTC 1 chrII:13675373-13675453 ( 38) TTCTCCTC 1 chrI:9333192-9333272 ( 15) TTCCTCTC 1 chrV:14135206-14135286 ( 17) TTCTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYYYTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1012 E= 1.9e+002 -1232 -1232 -1232 163 -1232 160 -1232 42 -1232 -9 -1232 135 -1232 113 -1232 86 -1232 120 -1232 81 -1232 138 -1232 66 -1232 -1232 -1232 163 -1232 241 -1232 -1232 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYYYTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.9e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.568627 0.000000 0.431373 0.000000 0.176471 0.000000 0.823529 0.000000 0.411765 0.000000 0.588235 0.000000 0.431373 0.000000 0.568627 0.000000 0.490196 0.000000 0.509804 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYYYTC MEME-4 regular expression -------------------------------------------------------------------------------- T[CT]T[TC][TC][TC]TC -------------------------------------------------------------------------------- Time 18.53 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCGTCTC MEME-5 width = 8 sites = 10 llr = 104 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::7:1a:9 probability G :a:a:::: matrix T a:3:9:a1 bits 2.5 * * * 2.2 * * * 2.0 * * * * 1.7 ** * *** Relative 1.5 ** * *** Entropy 1.2 ******** (15.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGCGTCTC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:14870036-14870116 14 7.34e-06 TTTGTTTGTC TGCGTCTC CACAGTGCTT chrI:2598521-2598601 72 7.34e-06 AATCAGTGTC TGCGTCTC T chrV:19613256-19613336 73 7.34e-06 AAAAATCTTC TGCGTCTC chrII:1503791-1503871 61 7.34e-06 TTTTTTTCTC TGCGTCTC TATTATCTAG chrI:2773929-2774009 56 7.34e-06 TTCGTCCGTC TGCGTCTC TCACAACTAG chrI:10514027-10514107 68 1.99e-05 TAGCCTTAAT TGTGTCTC ATGAT chrIV:9716630-9716710 30 1.99e-05 ttCATATCTA TGTGTCTC TCTACATCGT chrIV:5333689-5333769 10 1.99e-05 TTTATCACT TGTGTCTC ATATGATTGT chrIII:14846-14926 37 2.42e-05 CTGATTTCTC TGCGCCTC CGTGTAGATA chrV:7837098-7837178 16 3.68e-05 ATTTATTTAT TGCGTCTT GAAAGGGGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:14870036-14870116 7.3e-06 13_[+5]_59 chrI:2598521-2598601 7.3e-06 71_[+5]_1 chrV:19613256-19613336 7.3e-06 72_[+5] chrII:1503791-1503871 7.3e-06 60_[+5]_12 chrI:2773929-2774009 7.3e-06 55_[+5]_17 chrI:10514027-10514107 2e-05 67_[+5]_5 chrIV:9716630-9716710 2e-05 29_[+5]_43 chrIV:5333689-5333769 2e-05 9_[+5]_63 chrIII:14846-14926 2.4e-05 36_[+5]_36 chrV:7837098-7837178 3.7e-05 15_[+5]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGTCTC width=8 seqs=10 chrIV:14870036-14870116 ( 14) TGCGTCTC 1 chrI:2598521-2598601 ( 72) TGCGTCTC 1 chrV:19613256-19613336 ( 73) TGCGTCTC 1 chrII:1503791-1503871 ( 61) TGCGTCTC 1 chrI:2773929-2774009 ( 56) TGCGTCTC 1 chrI:10514027-10514107 ( 68) TGTGTCTC 1 chrIV:9716630-9716710 ( 30) TGTGTCTC 1 chrIV:5333689-5333769 ( 10) TGTGTCTC 1 chrIII:14846-14926 ( 37) TGCGCCTC 1 chrV:7837098-7837178 ( 16) TGCGTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0846 E= 1.5e+003 -997 -997 -997 163 -997 -997 246 -997 -997 190 -997 -11 -997 -997 246 -997 -997 -91 -997 148 -997 241 -997 -997 -997 -997 -997 163 -997 226 -997 -169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.5e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.700000 0.000000 0.300000 0.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.000000 0.900000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.900000 0.000000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-5 regular expression -------------------------------------------------------------------------------- TG[CT]GTCTC -------------------------------------------------------------------------------- Time 21.79 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:12086399-12086479 2.66e-02 17_[+2(3.65e-05)]_55 chrX:13112821-13112901 1.55e-02 23_[+2(3.65e-05)]_49 chrV:13935587-13935667 2.99e-02 58_[+2(3.65e-05)]_14 chrX:2567859-2567939 1.29e-02 49_[+2(5.77e-05)]_23 chrX:13937504-13937584 6.49e-03 45_[+2(3.65e-05)]_19_[+1(8.08e-05)] chrI:4917396-4917476 5.49e-02 49_[+1(3.08e-05)]_23 chrI:6263570-6263650 2.74e-03 7_[+2(9.25e-05)]_9_[+1(9.96e-05)]_\ 48 chrIII:11727154-11727234 6.50e-02 80 chrX:13938091-13938171 6.71e-01 80 chrII:10074128-10074208 2.66e-01 80 chrX:11032532-11032612 2.05e-05 25_[+1(3.08e-05)]_10_[+2(3.65e-05)]_\ 29 chrI:7243879-7243959 1.53e-01 39_[+1(9.96e-05)]_33 chrV:10387569-10387649 2.64e-01 80 chrII:4391193-4391273 3.00e-01 80 chrII:2399978-2400058 2.04e-01 64_[+2(3.65e-05)]_8 chrV:12011853-12011933 1.21e-02 64_[+1(3.08e-05)]_8 chrIV:7651291-7651371 3.95e-02 48_[+3(4.77e-05)]_24 chrII:14597958-14598038 5.25e-04 31_[+2(3.65e-05)]_41 chrX:15375457-15375537 1.11e-01 80 chrV:12294266-12294346 4.41e-01 80 chrI:9084248-9084328 2.73e-02 14_[+2(5.77e-05)]_5_[+2(9.25e-05)]_\ 45 chrX:6081935-6082015 3.29e-04 63_[+5(6.58e-05)]_9 chrII:12942660-12942740 1.54e-01 80 chrX:7584148-7584228 1.36e-02 30_[+1(4.88e-05)]_42 chrX:11137143-11137223 8.05e-01 80 chrII:14616579-14616659 3.57e-02 19_[+1(3.08e-05)]_53 chrV:4630455-4630535 2.80e-02 80 chrV:10012781-10012861 3.36e-03 38_[+1(8.08e-05)]_34 chrI:7115798-7115878 9.88e-02 80 chrX:13939509-13939589 3.36e-02 80 chrX:3495886-3495966 2.11e-03 80 chrIV:15395386-15395466 1.13e-01 80 chrIV:6652821-6652901 3.79e-01 80 chrI:5883885-5883965 4.25e-02 80 chrIV:5140139-5140219 2.13e-01 3_[+3(9.72e-05)]_69 chrII:9709048-9709128 2.28e-01 80 chrX:10172335-10172415 1.49e-02 41_[+2(5.77e-05)]_31 chrI:9330902-9330982 4.49e-01 80 chrIV:5339433-5339513 5.75e-02 80 chrII:4749728-4749808 1.91e-02 55_[+3(1.56e-05)]_17 chrIII:8036185-8036265 3.69e-01 80 chrII:9345278-9345358 4.34e-01 80 chrV:9654309-9654389 8.13e-01 80 chrII:10515588-10515668 1.40e-02 19_[+1(8.08e-05)]_53 chrX:4663449-4663529 4.23e-02 30_[+1(4.88e-05)]_42 chrX:14907534-14907614 5.43e-02 4_[+2(3.65e-05)]_68 chrII:11502079-11502159 1.46e-01 53_[+4(7.21e-05)]_19 chrI:8057812-8057892 7.16e-02 80 chrII:900868-900948 1.11e-03 1_[+1(4.88e-05)]_12_[+2(3.65e-05)]_\ 51 chrI:6951192-6951272 3.05e-02 80 chrIII:7199686-7199766 7.72e-02 71_[+2(9.25e-05)]_1 chrIV:4032493-4032573 7.09e-03 37_[+2(3.65e-05)]_35 chrII:10011113-10011193 3.37e-01 80 chrI:7404858-7404938 7.04e-02 80 chrX:5605243-5605323 1.87e-03 32_[+4(3.51e-05)]_20_[+2(3.65e-05)]_\ 12 chrI:7116815-7116895 6.74e-04 52_[+3(4.77e-05)]_20 chrII:1189810-1189890 6.14e-02 80 chrI:8797762-8797842 1.26e-02 80 chrII:13150118-13150198 1.56e-02 80 chrIII:12851229-12851309 1.55e-01 80 chrIV:10610092-10610172 1.11e-01 80 chrIV:8450694-8450774 6.33e-02 39_[+2(5.77e-05)]_33 chrV:14657108-14657188 1.21e-01 80 chrI:6886203-6886283 1.07e-01 28_[+3(4.77e-05)]_44 chrII:9028285-9028365 1.07e-03 17_[+1(3.08e-05)]_55 chrX:3756430-3756510 1.46e-01 80 chrII:6909724-6909804 1.91e-02 54_[+1(3.08e-05)]_18 chrI:2773929-2774009 3.25e-04 17_[+2(3.65e-05)]_30_[+5(7.34e-06)]_\ 17 chrV:9633468-9633548 9.11e-01 80 chrI:10355602-10355682 1.59e-03 33_[+1(3.08e-05)]_24_[+3(4.77e-05)]_\ 7 chrIV:7985878-7985958 1.38e-04 3_[+2(5.77e-05)]_39_[+1(3.08e-05)]_\ 22 chrI:4672782-4672862 1.36e-02 67_[+2(3.65e-05)]_5 chrII:11849683-11849763 2.97e-01 80 chrI:6999640-6999720 7.19e-02 41_[+3(1.56e-05)]_31 chrIV:4587687-4587767 2.64e-02 6_[+2(3.65e-05)]_3_[+2(3.65e-05)]_\ 55 chrIV:11092819-11092899 1.30e-03 57_[+1(3.08e-05)]_15 chrV:10460856-10460936 1.90e-01 80 chrX:11015088-11015168 3.05e-03 35_[+2(3.65e-05)]_37 chrX:9608294-9608374 1.27e-02 51_[+3(7.66e-05)]_13_[+1(4.88e-05)] chrX:6640942-6641022 6.74e-02 80 chrV:8073308-8073388 3.39e-02 80 chrV:9504631-9504711 3.59e-01 80 chrV:15708096-15708176 6.90e-01 80 chrIV:6426484-6426564 9.81e-02 23_[+1(3.08e-05)]_49 chrX:2864031-2864111 2.12e-01 80 chrII:1503791-1503871 1.23e-04 6_[+2(3.65e-05)]_22_[+2(3.65e-05)]_\ 16_[+5(7.34e-06)]_12 chrII:2805708-2805788 1.32e-02 28_[+3(9.72e-05)]_31_[+1(3.08e-05)]_\ 5 chrV:6504293-6504373 3.61e-01 80 chrV:5701318-5701398 7.36e-01 80 chrIV:11809196-11809276 4.96e-03 80 chrIII:5464981-5465061 1.31e-02 80 chrIII:4413275-4413355 1.77e-02 61_[+2(5.77e-05)]_11 chrII:12053636-12053716 1.34e-02 4_[+1(4.88e-05)]_68 chrIV:302896-302976 1.51e-01 80 chrII:7628808-7628888 4.45e-01 80 chrII:12237745-12237825 1.21e-02 24_[+3(1.56e-05)]_48 chrI:13064941-13065021 2.17e-01 80 chrIII:3355977-3356057 2.94e-02 25_[+1(3.08e-05)]_47 chrIII:7566255-7566335 8.68e-05 15_[+1(3.08e-05)]_25_[+4(9.54e-05)]_\ 24 chrI:9093527-9093607 7.21e-02 80 chrIV:9633222-9633302 3.70e-01 80 chrI:11196658-11196738 4.93e-04 15_[+2(3.65e-05)]_57 chrX:498800-498880 1.64e-01 80 chrII:7789735-7789815 6.68e-02 80 chrV:6503274-6503354 2.07e-02 80 chrV:11739986-11740066 6.55e-01 80 chrII:6887736-6887816 7.89e-04 35_[+2(3.65e-05)]_19_[+3(9.72e-05)]_\ 10 chrIII:8036660-8036740 2.13e-02 44_[+1(3.08e-05)]_28 chrV:5693750-5693830 5.74e-02 80 chrIII:3041235-3041315 2.22e-01 80 chrV:15286168-15286248 9.92e-02 80 chrIII:9502322-9502402 4.37e-01 80 chrI:11782457-11782537 8.41e-03 28_[+3(5.74e-05)]_44 chrV:11508969-11509049 7.64e-02 80 chrV:11220587-11220667 3.40e-03 7_[+2(3.65e-05)]_65 chrX:16263395-16263475 3.13e-01 80 chrV:10571711-10571791 6.63e-02 53_[+3(5.74e-05)]_19 chrII:9753197-9753277 5.14e-02 80 chrIV:8864845-8864925 5.12e-01 80 chrV:16780773-16780853 4.51e-02 39_[+1(4.88e-05)]_33 chrI:3709932-3710012 8.31e-01 80 chrV:12161093-12161173 1.42e-03 38_[+2(3.65e-05)]_16_[+3(6.75e-05)]_\ 10 chrV:11795453-11795533 5.04e-01 80 chrI:14657233-14657313 3.11e-03 42_[+1(3.08e-05)]_30 chrIII:2647637-2647717 7.85e-06 28_[+3(7.66e-05)]_17_[+2(3.65e-05)]_\ 10_[+4(3.51e-05)]_1 chrV:7878551-7878631 4.04e-01 80 chrII:1850998-1851078 2.73e-02 38_[+2(3.65e-05)]_34 chrX:9403138-9403218 4.27e-02 80 chrIII:9119045-9119125 4.34e-01 80 chrX:10168711-10168791 2.48e-02 48_[+2(3.65e-05)]_1_[+2(5.77e-05)]_\ 15 chrIII:3435383-3435463 6.79e-02 54_[+2(3.65e-05)]_18 chrX:14737108-14737188 2.06e-02 80 chrIII:4328791-4328871 1.05e-01 72_[+1(4.88e-05)] chrI:4328988-4329068 4.25e-01 80 chrII:9032077-9032157 9.28e-02 80 chrIV:5333689-5333769 5.14e-03 9_[+5(1.99e-05)]_63 chrI:14155255-14155335 2.52e-01 80 chrX:504196-504276 4.59e-02 80 chrIV:2279910-2279990 1.14e-03 17_[+4(9.54e-05)]_47_[+3(4.77e-05)] chrV:14095100-14095180 4.61e-02 65_[+1(3.08e-05)]_7 chrX:6514675-6514755 9.97e-02 80 chrII:6610480-6610560 2.89e-01 80 chrII:5768557-5768637 9.14e-01 80 chrIV:8464317-8464397 4.07e-02 17_[+4(9.54e-05)]_55 chrIII:15397-15477 3.70e-03 39_[+3(1.56e-05)]_16_[+1(3.08e-05)]_\ 9 chrI:6075040-6075120 1.13e-01 80 chrI:7056160-7056240 3.02e-02 80 chrIV:13080312-13080392 4.09e-02 80 chrIV:10261199-10261279 3.28e-02 80 chrII:12264102-12264182 3.94e-01 80 chrV:14499241-14499321 3.16e-01 80 chrV:3617041-3617121 9.60e-02 68_[+1(8.08e-05)]_4 chrI:7114888-7114968 4.94e-02 6_[+4(7.21e-05)]_66 chrV:8040847-8040927 2.52e-01 80 chrII:6989611-6989691 2.94e-04 80 chrV:12667630-12667710 2.52e-01 80 chrX:8455878-8455958 2.32e-01 80 chrX:6051020-6051100 9.02e-01 80 chrIV:9755858-9755938 5.73e-03 21_[+2(5.77e-05)]_32_[+4(9.54e-05)]_\ 11 chrX:7143655-7143735 7.68e-01 80 chrIII:1622532-1622612 1.72e-01 80 chrX:16558264-16558344 1.74e-04 80 chrX:500371-500451 1.19e-03 31_[+2(9.25e-05)]_23_[+4(7.21e-05)]_\ 10 chrV:19613256-19613336 8.87e-06 44_[+2(9.25e-05)]_3_[+1(8.08e-05)]_\ 9_[+5(7.34e-06)] chrIV:1866955-1867035 1.31e-02 80 chrX:6275453-6275533 2.06e-01 80 chrII:1182194-1182274 1.58e-02 29_[+1(3.08e-05)]_6_[+1(4.88e-05)]_\ 29 chrIV:16015916-16015996 8.29e-03 3_[+1(4.88e-05)]_69 chrV:7837098-7837178 1.60e-03 15_[+5(3.68e-05)]_15_[+3(4.77e-05)]_\ 34 chrX:1458938-1459018 5.72e-01 80 chrII:12615573-12615653 5.96e-01 80 chrII:13293102-13293182 2.93e-02 80 chrIV:8027816-8027896 2.37e-02 80 chrII:11611579-11611659 4.95e-02 31_[+1(3.08e-05)]_41 chrX:2178101-2178181 5.24e-01 80 chrX:13663810-13663890 4.45e-01 80 chrI:7756797-7756877 6.40e-01 80 chrX:14709788-14709868 1.57e-01 70_[+3(5.74e-05)]_2 chrX:5468015-5468095 1.57e-01 12_[+1(3.08e-05)]_60 chrI:10157533-10157613 2.83e-01 80 chrIII:4189766-4189846 2.68e-01 80 chrI:2598521-2598601 1.02e-02 71_[+5(7.34e-06)]_1 chrII:3242003-3242083 7.17e-01 80 chrIV:9376675-9376755 6.20e-03 18_[+2(3.65e-05)]_54 chrV:10557239-10557319 1.00e-01 46_[+3(7.66e-05)]_26 chrIII:3808699-3808779 2.09e-02 30_[+1(4.88e-05)]_42 chrIII:13542595-13542675 3.43e-03 50_[+1(3.08e-05)]_22 chrII:11163442-11163522 2.34e-01 80 chrIV:8044725-8044805 2.02e-01 80 chrII:6712539-6712619 6.33e-01 80 chrIII:7298268-7298348 1.28e-01 80 chrIII:13393758-13393838 4.58e-05 35_[+5(1.99e-05)]_37 chrX:2946722-2946802 2.17e-02 40_[+5(6.58e-05)]_32 chrII:9752413-9752493 6.10e-02 48_[+3(1.56e-05)]_24 chrV:3989327-3989407 7.93e-01 80 chrI:8869164-8869244 1.21e-01 80 chrIII:14846-14926 3.27e-05 11_[+1(9.96e-05)]_17_[+5(2.42e-05)]_\ 22_[+4(3.51e-05)]_6 chrIII:7489296-7489376 9.88e-02 5_[+3(4.77e-05)]_67 chrX:15626316-15626396 3.52e-01 80 chrI:159426-159506 5.90e-01 80 chrX:10177469-10177549 5.75e-02 24_[+1(8.08e-05)]_48 chrIV:12711153-12711233 5.67e-03 22_[+4(3.51e-05)]_50 chrI:12540754-12540834 2.83e-02 37_[+1(4.88e-05)]_35 chrIV:9535269-9535349 2.11e-01 80 chrV:14135206-14135286 1.45e-02 29_[+2(5.77e-05)]_10_[+2(3.65e-05)]_\ 25 chrX:7590865-7590945 2.55e-03 66_[+3(2.12e-05)]_6 chrI:1689039-1689119 6.74e-02 80 chrI:11870188-11870268 1.76e-02 67_[+1(3.08e-05)]_5 chrIII:748851-748931 4.68e-02 80 chrX:5714413-5714493 6.24e-02 80 chrI:9333192-9333272 9.73e-02 80 chrV:9588808-9588888 3.53e-01 80 chrII:11056952-11057032 4.51e-02 40_[+2(3.65e-05)]_32 chrV:4518839-4518919 5.21e-02 52_[+1(3.08e-05)]_20 chrII:3556746-3556826 9.01e-05 4_[+1(8.08e-05)]_11_[+2(3.65e-05)]_\ 49 chrV:13173892-13173972 2.74e-01 80 chrX:8752707-8752787 1.60e-02 15_[+3(1.56e-05)]_57 chrV:13490024-13490104 2.06e-01 80 chrV:6365701-6365781 1.89e-01 80 chrX:6109558-6109638 3.45e-01 80 chrIV:9716630-9716710 4.15e-03 29_[+5(1.99e-05)]_43 chrIV:14468245-14468325 4.68e-03 6_[+2(9.25e-05)]_35_[+3(9.72e-05)]_\ [+3(4.77e-05)]_15 chrIV:14870036-14870116 6.76e-03 13_[+5(7.34e-06)]_59 chrIV:13682915-13682995 2.11e-03 51_[+3(1.56e-05)]_21 chrX:5079458-5079538 5.47e-01 80 chrI:11786090-11786170 7.93e-03 [+4(3.51e-05)]_[+4(3.51e-05)]_64 chrI:4328271-4328351 5.53e-02 70_[+1(4.88e-05)]_2 chrII:13675373-13675453 1.62e-01 80 chrIII:9679044-9679124 4.30e-02 80 chrV:3979977-3980057 1.06e-05 8_[+4(9.54e-05)]_11_[+1(3.08e-05)]_\ 14_[+3(2.12e-05)]_23 chrI:10514027-10514107 4.81e-04 67_[+5(1.99e-05)]_5 chrIV:6657709-6657789 8.10e-02 80 chrIII:3480400-3480480 3.38e-03 55_[+4(3.51e-05)]_[+4(7.21e-05)]_9 chrX:5854571-5854651 8.89e-03 50_[+4(9.54e-05)]_22 chrII:12622300-12622380 3.63e-01 80 chrV:11801583-11801663 2.81e-01 80 chrIII:154328-154408 1.37e-03 58_[+4(2.15e-05)]_14 chrIII:5921442-5921522 1.71e-02 15_[+1(3.08e-05)]_57 chrI:2761039-2761119 1.07e-02 53_[+3(5.74e-05)]_19 chrII:4562717-4562797 9.04e-03 80 chrI:6580606-6580686 2.28e-03 3_[+4(7.91e-06)]_69 chrIV:2195830-2195910 5.78e-02 80 chrIV:5939253-5939333 2.64e-03 34_[+2(3.65e-05)]_38 chrV:11148025-11148105 9.38e-02 80 chrX:17644005-17644085 7.75e-01 80 chrX:2115323-2115403 6.96e-02 80 chrII:9344174-9344254 4.31e-01 80 chrIII:5096894-5096974 6.35e-03 51_[+2(9.25e-05)]_21 chrX:10686615-10686695 5.23e-02 71_[+4(9.54e-05)]_1 chrII:4420091-4420171 1.29e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************