******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/elt-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:12274520-12274600 1.0000 80 chrII:4203928-4204008 1.0000 80 chrV:2848691-2848771 1.0000 80 chrII:5747505-5747585 1.0000 80 chrV:15448585-15448665 1.0000 80 chrII:922923-923003 1.0000 80 chrIV:1228811-1228891 1.0000 80 chrII:5086257-5086337 1.0000 80 chrV:17014212-17014292 1.0000 80 chrV:15328200-15328280 1.0000 80 chrII:1621953-1622033 1.0000 80 chrII:1636138-1636218 1.0000 80 chrX:7139750-7139830 1.0000 80 chrII:11860001-11860081 1.0000 80 chrX:6429736-6429816 1.0000 80 chrV:18191297-18191377 1.0000 80 chrIV:3922045-3922125 1.0000 80 chrIV:12972177-12972257 1.0000 80 chrIV:12969311-12969391 1.0000 80 chrIV:9540461-9540541 1.0000 80 chrV:12634207-12634287 1.0000 80 chrIV:4148083-4148163 1.0000 80 chrII:13997666-13997746 1.0000 80 chrIV:8452030-8452110 1.0000 80 chrX:10694447-10694527 1.0000 80 chrIII:6495329-6495409 1.0000 80 chrV:16840449-16840529 1.0000 80 chrII:3318977-3319057 1.0000 80 chrII:5744487-5744567 1.0000 80 chrIV:1246916-1246996 1.0000 80 chrV:8767655-8767735 1.0000 80 chrIV:12912132-12912212 1.0000 80 chrX:11251141-11251221 1.0000 80 chrI:13138905-13138985 1.0000 80 chrIV:12901776-12901856 1.0000 80 chrII:5749924-5750004 1.0000 80 chrIII:12445454-12445534 1.0000 80 chrX:6476697-6476777 1.0000 80 chrV:9146379-9146459 1.0000 80 chrIV:3965161-3965241 1.0000 80 chrX:6408444-6408524 1.0000 80 chrII:6630986-6631066 1.0000 80 chrII:5109809-5109889 1.0000 80 chrV:16232317-16232397 1.0000 80 chrV:19230571-19230651 1.0000 80 chrIV:13008523-13008603 1.0000 80 chrX:13884315-13884395 1.0000 80 chrII:5022546-5022626 1.0000 80 chrV:12942236-12942316 1.0000 80 chrII:5186986-5187066 1.0000 80 chrX:13937547-13937627 1.0000 80 chrIII:2053592-2053672 1.0000 80 chrX:16166640-16166720 1.0000 80 chrIV:4152311-4152391 1.0000 80 chrII:5234894-5234974 1.0000 80 chrIII:1289301-1289381 1.0000 80 chrII:3990855-3990935 1.0000 80 chrIV:4121191-4121271 1.0000 80 chrIV:3963575-3963655 1.0000 80 chrIII:1398365-1398445 1.0000 80 chrV:5882587-5882667 1.0000 80 chrIV:1256881-1256961 1.0000 80 chrV:17241414-17241494 1.0000 80 chrV:17238985-17239065 1.0000 80 chrII:1101566-1101646 1.0000 80 chrV:13638158-13638238 1.0000 80 chrX:5834918-5834998 1.0000 80 chrII:4777093-4777173 1.0000 80 chrV:8307865-8307945 1.0000 80 chrIV:10964828-10964908 1.0000 80 chrV:1545858-1545938 1.0000 80 chrII:2090796-2090876 1.0000 80 chrII:943948-944028 1.0000 80 chrV:3936051-3936131 1.0000 80 chrX:11132447-11132527 1.0000 80 chrIV:945745-945825 1.0000 80 chrII:1670421-1670501 1.0000 80 chrIV:11760735-11760815 1.0000 80 chrIV:12973497-12973577 1.0000 80 chrV:15323581-15323661 1.0000 80 chrIII:10305476-10305556 1.0000 80 chrII:4967835-4967915 1.0000 80 chrII:11739382-11739462 1.0000 80 chrX:6169395-6169475 1.0000 80 chrIV:15641047-15641127 1.0000 80 chrII:5561565-5561645 1.0000 80 chrV:11403228-11403308 1.0000 80 chrV:47970-48050 1.0000 80 chrII:3815930-3816010 1.0000 80 chrV:18246233-18246313 1.0000 80 chrI:7758232-7758312 1.0000 80 chrII:1159827-1159907 1.0000 80 chrIV:12978473-12978553 1.0000 80 chrIII:8594255-8594335 1.0000 80 chrIII:2239903-2239983 1.0000 80 chrI:11249898-11249978 1.0000 80 chrIV:12964801-12964881 1.0000 80 chrV:13421863-13421943 1.0000 80 chrII:13980296-13980376 1.0000 80 chrIII:1295305-1295385 1.0000 80 chrV:11403831-11403911 1.0000 80 chrV:16610260-16610340 1.0000 80 chrIII:12446142-12446222 1.0000 80 chrX:6924625-6924705 1.0000 80 chrV:15322825-15322905 1.0000 80 chrV:17240739-17240819 1.0000 80 chrV:6823528-6823608 1.0000 80 chrV:16608655-16608735 1.0000 80 chrIV:12435595-12435675 1.0000 80 chrIV:12871697-12871777 1.0000 80 chrIV:12921175-12921255 1.0000 80 chrII:4966738-4966818 1.0000 80 chrII:4657500-4657580 1.0000 80 chrII:11647003-11647083 1.0000 80 chrI:4155708-4155788 1.0000 80 chrII:3992170-3992250 1.0000 80 chrIV:3819513-3819593 1.0000 80 chrII:10281819-10281899 1.0000 80 chrV:16494504-16494584 1.0000 80 chrII:10403167-10403247 1.0000 80 chrV:17616961-17617041 1.0000 80 chrIV:13727321-13727401 1.0000 80 chrV:18324683-18324763 1.0000 80 chrII:2749767-2749847 1.0000 80 chrV:7186736-7186816 1.0000 80 chrV:19846400-19846480 1.0000 80 chrV:7548147-7548227 1.0000 80 chrIV:12986126-12986206 1.0000 80 chrIII:2050653-2050733 1.0000 80 chrX:5985882-5985962 1.0000 80 chrIV:7521023-7521103 1.0000 80 chrII:9010136-9010216 1.0000 80 chrIV:1075646-1075726 1.0000 80 chrV:17243190-17243270 1.0000 80 chrX:5465782-5465862 1.0000 80 chrX:15598854-15598934 1.0000 80 chrV:9711296-9711376 1.0000 80 chrV:15226385-15226465 1.0000 80 chrI:4099693-4099773 1.0000 80 chrIV:15559254-15559334 1.0000 80 chrV:10732140-10732220 1.0000 80 chrX:11351426-11351506 1.0000 80 chrIV:9159182-9159262 1.0000 80 chrI:6203883-6203963 1.0000 80 chrV:12824935-12825015 1.0000 80 chrX:2158000-2158080 1.0000 80 chrIV:4027685-4027765 1.0000 80 chrIV:12906671-12906751 1.0000 80 chrII:3440410-3440490 1.0000 80 chrX:13803311-13803391 1.0000 80 chrV:18957588-18957668 1.0000 80 chrII:3788517-3788597 1.0000 80 chrX:8242079-8242159 1.0000 80 chrIV:4120447-4120527 1.0000 80 chrII:5553684-5553764 1.0000 80 chrV:17009513-17009593 1.0000 80 chrIV:17342324-17342404 1.0000 80 chrIII:2266146-2266226 1.0000 80 chrII:14055862-14055942 1.0000 80 chrI:10063085-10063165 1.0000 80 chrIV:10269608-10269688 1.0000 80 chrV:3482760-3482840 1.0000 80 chrV:19319751-19319831 1.0000 80 chrIV:8163842-8163922 1.0000 80 chrIV:11489229-11489309 1.0000 80 chrIII:535875-535955 1.0000 80 chrIV:6086636-6086716 1.0000 80 chrII:3954210-3954290 1.0000 80 chrII:5806701-5806781 1.0000 80 chrV:13358064-13358144 1.0000 80 chrII:4011675-4011755 1.0000 80 chrII:14959427-14959507 1.0000 80 chrV:4915024-4915104 1.0000 80 chrIII:3282024-3282104 1.0000 80 chrX:3110754-3110834 1.0000 80 chrIV:11623237-11623317 1.0000 80 chrI:1017489-1017569 1.0000 80 chrX:14194414-14194494 1.0000 80 chrV:11649402-11649482 1.0000 80 chrX:13163380-13163460 1.0000 80 chrV:12745156-12745236 1.0000 80 chrV:5511898-5511978 1.0000 80 chrIV:14431035-14431115 1.0000 80 chrX:9539859-9539939 1.0000 80 chrIV:16525158-16525238 1.0000 80 chrIV:1560100-1560180 1.0000 80 chrV:11236113-11236193 1.0000 80 chrV:13138116-13138196 1.0000 80 chrV:9202869-9202949 1.0000 80 chrX:10529161-10529241 1.0000 80 chrII:6632161-6632241 1.0000 80 chrII:9468575-9468655 1.0000 80 chrII:888184-888264 1.0000 80 chrII:10139353-10139433 1.0000 80 chrV:7364214-7364294 1.0000 80 chrI:7355924-7356004 1.0000 80 chrII:6123161-6123241 1.0000 80 chrX:11909298-11909378 1.0000 80 chrIV:9160007-9160087 1.0000 80 chrX:9687417-9687497 1.0000 80 chrIV:9311291-9311371 1.0000 80 chrV:19846600-19846680 1.0000 80 chrX:10630572-10630652 1.0000 80 chrV:17090076-17090156 1.0000 80 chrII:1475486-1475566 1.0000 80 chrI:1022250-1022330 1.0000 80 chrII:7232652-7232732 1.0000 80 chrI:6963338-6963418 1.0000 80 chrII:5332502-5332582 1.0000 80 chrIV:6048610-6048690 1.0000 80 chrX:8492902-8492982 1.0000 80 chrIII:6818234-6818314 1.0000 80 chrII:1386636-1386716 1.0000 80 chrII:3295314-3295394 1.0000 80 chrIV:11771199-11771279 1.0000 80 chrII:5557304-5557384 1.0000 80 chrV:12296282-12296362 1.0000 80 chrII:4674355-4674435 1.0000 80 chrIV:9762927-9763007 1.0000 80 chrI:10382038-10382118 1.0000 80 chrII:5020782-5020862 1.0000 80 chrIV:14561858-14561938 1.0000 80 chrV:15425550-15425630 1.0000 80 chrIII:2653272-2653352 1.0000 80 chrX:5962720-5962800 1.0000 80 chrIII:13388783-13388863 1.0000 80 chrV:18461462-18461542 1.0000 80 chrX:13818955-13819035 1.0000 80 chrII:6781345-6781425 1.0000 80 chrII:4803094-4803174 1.0000 80 chrII:1576919-1576999 1.0000 80 chrII:12982985-12983065 1.0000 80 chrV:17662437-17662517 1.0000 80 chrV:11849574-11849654 1.0000 80 chrII:8226609-8226689 1.0000 80 chrII:1850955-1851035 1.0000 80 chrX:7318770-7318850 1.0000 80 chrV:12822219-12822299 1.0000 80 chrIV:3944644-3944724 1.0000 80 chrII:6178142-6178222 1.0000 80 chrI:13815894-13815974 1.0000 80 chrII:3990144-3990224 1.0000 80 chrII:4194275-4194355 1.0000 80 chrV:8288289-8288369 1.0000 80 chrII:12577945-12578025 1.0000 80 chrV:6280225-6280305 1.0000 80 chrIV:12728304-12728384 1.0000 80 chrII:2610284-2610364 1.0000 80 chrX:6463167-6463247 1.0000 80 chrV:19377201-19377281 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_elt-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/elt-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.32 C 0.181 G 0.178 T 0.321 Background letter frequencies (from file dataset with add-one prior applied): A 0.32 C 0.181 G 0.178 T 0.321 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTKATMAG MEME-1 width = 8 sites = 154 llr = 1094 E-value = 1.3e-092 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::a:6a1 pos.-specific C 6::::4:2 probability G 2:6::::6 matrix T 1a4:a::: bits 2.5 2.2 2.0 1.7 * ** * Relative 1.5 * ** * Entropy 1.2 **** * (10.3 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGATAAG consensus T C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:535875-535955 28 1.10e-05 CAGTTTGACA CTGATCAG GTTATGAGAA chrV:6280225-6280305 53 3.03e-05 TTGAGCAGTG CTGATAAG GTTTTTTTTT chrII:1850955-1851035 28 3.03e-05 ATCACCTGTC CTGATAAG ATCCTTATCA chrX:13818955-13819035 56 3.03e-05 GCAAACTGTA CTGATAAG GCCACCCATT chrIV:11771199-11771279 38 3.03e-05 CGTACACGAA CTGATAAG ACTGATAAAT chrV:17090076-17090156 67 3.03e-05 TCTGCAAATA CTGATAAG AGTCCT chrIV:14431035-14431115 35 3.03e-05 GACGTGTCAA CTGATAAG AATGAGGTTT chrII:3788517-3788597 56 3.03e-05 GCGTCTTTTA CTGATAAG AAGTTTTAAA chrIV:12906671-12906751 44 3.03e-05 AAATCAAGTA CTGATAAG CATTGTGCAT chrIV:15559254-15559334 63 3.03e-05 TCAGTTTCCT CTGATAAG ATAACAAACA chrV:9711296-9711376 24 3.03e-05 TTTGAATGTA CTGATAAG ACGCCCCACA chrX:15598854-15598934 45 3.03e-05 GTGTGCTCTG CTGATAAG CAATAATCGT chrIII:2050653-2050733 10 3.03e-05 ATGAAGGAA CTGATAAG GATTAAAAGG chrIV:12986126-12986206 43 3.03e-05 AAGAAGTTTA CTGATAAG GCAGTAAGAG chrV:16494504-16494584 62 3.03e-05 ATGATGTCAG CTGATAAG GTCTTGTTGG chrIV:12871697-12871777 50 3.03e-05 CAGGGAGTGG CTGATAAG AAAGAAAAAA chrV:15322825-15322905 55 3.03e-05 TCGTAAATTT CTGATAAG ACGTTTGAAT chrIV:12964801-12964881 57 3.03e-05 CGCAGTTTCA CTGATAAG TTATGAGTAT chrIII:2239903-2239983 41 3.03e-05 TGTATAGGAA CTGATAAG AAATTGTTGG chrIV:15641047-15641127 62 3.03e-05 GTTTCCGTTA CTGATAAG AATCTCAACT chrV:15323581-15323661 55 3.03e-05 TTCCTTGTAA CTGATAAG GATTTTACGT chrIV:945745-945825 30 3.03e-05 CAGTTTTTCA CTGATAAG ACTAGAAATT chrV:3936051-3936131 6 3.03e-05 TTTTA CTGATAAG AACACGCTGT chrX:16166640-16166720 48 3.03e-05 CGTTAATTCA CTGATAAG AGAAATTCAA chrIII:2053592-2053672 44 3.03e-05 ACTGATAACG CTGATAAG AAAATGGAAG chrII:6630986-6631066 56 3.03e-05 TTTCCTTACT CTGATAAG AAGGAGCATA chrX:6408444-6408524 57 3.03e-05 AAAGACTTTA CTGATAAG CACAAACCGG chrIII:6495329-6495409 36 3.03e-05 TCGTTTTCAG CTGATAAG TCCCAATAGT chrII:3990144-3990224 44 5.01e-05 CGTGGTTTCT CTTATCAG GGTGGGGGAC chrV:12822219-12822299 44 5.01e-05 ATGGAGTTAG CTTATCAG GGGAAACCGG chrII:1576919-1576999 58 5.01e-05 AAAAACTGCT CTTATCAG TTACGGGAAT chrII:3295314-3295394 30 5.01e-05 AGCACGTATT CTTATCAG CGAATTAGTT chrV:7364214-7364294 38 5.01e-05 TAAAAAAGCT CTTATCAG TTATTTTCAC chrV:3482760-3482840 21 5.01e-05 ACAAACTCTC CTTATCAG TTGCTCTTCA chrI:10063085-10063165 2 5.01e-05 T CTTATCAG TTTTATCGAT chrI:4099693-4099773 59 5.01e-05 TTCACACGTT CTTATCAG TTCGTAACTG chrX:5465782-5465862 13 5.01e-05 TACGAGATGG CTTATCAG TGCCGACAGC chrV:7186736-7186816 29 5.01e-05 TATTTCTTTG CTTATCAG AAAGTTGATC chrV:18324683-18324763 36 5.01e-05 AGAAAAGTCT CTTATCAG CACTTTCTTC chrII:10281819-10281899 46 5.01e-05 GGAGGACTGT CTTATCAG AAACACTATA chrIV:12435595-12435675 45 5.01e-05 GATATGGATG CTTATCAG TTTGTGCCAA chrIII:12446142-12446222 38 5.01e-05 CATGTGAAAG CTTATCAG TTGAAAGGAG chrI:11249898-11249978 20 5.01e-05 TTAACAACTT CTTATCAG TTCCGAAATA chrII:3815930-3816010 68 5.01e-05 CAGTTATTTT CTTATCAG TGTTC chrIV:12973497-12973577 17 5.01e-05 CTACTAATCC CTTATCAG TTTGTGTTCC chrII:943948-944028 24 5.01e-05 AGATGTCATC CTTATCAG CAACCTATTG chrII:2090796-2090876 53 5.01e-05 AAACGGTTTT CTTATCAG CACGATAATT chrV:17238985-17239065 50 5.01e-05 TTTTTGCTGG CTTATCAG TGAAGTGCCA chrIV:4152311-4152391 14 5.01e-05 TTTCAAATTT CTTATCAG TTCCGAAATA chrIV:1246916-1246996 15 5.01e-05 ATTTACCACG CTTATCAG TAAAACCATG chrV:2848691-2848771 25 5.01e-05 ATTTCATTAT CTTATCAG TTGTTTCTTA chrII:1475486-1475566 49 6.08e-05 CATGCTGATA GTGATCAG AAAAGTGATT chrII:4194275-4194355 40 1.26e-04 CCCAAAAAAG GTGATAAG CGAAACTTTT chrII:5557304-5557384 19 1.26e-04 TGTCTTTTAG GTGATAAG AGGTTCAGGT chrII:7232652-7232732 69 1.26e-04 AATTATTATA GTGATAAG CATA chrII:11647003-11647083 48 1.26e-04 AGGTTAGTTA GTGATAAG CTTACTGATA chrV:11403831-11403911 1 1.26e-04 . GTGATAAG GGCGCCAAtg chrII:11739382-11739462 37 1.26e-04 AGCTGAAAAA GTGATAAG GTTATAAAAA chrIV:10964828-10964908 26 1.26e-04 CAAAGAAAGT GTGATAAG CCGCCACCAA chrIII:1398365-1398445 20 1.26e-04 ATGTGACCAA GTGATAAG TGATTCCTAG chrIII:1289301-1289381 56 1.26e-04 GGGGATGTGA GTGATAAG AACTAATTAA chrV:19230571-19230651 59 1.26e-04 AGCGTTAGGT GTGATAAG GATCACAAAC chrII:922923-923003 35 1.26e-04 TTTTTCGCGA GTGATAAG CCTCTTATTC chrI:7355924-7356004 66 1.46e-04 GACACCACAT CTGATAAC AATGTGG chrV:11236113-11236193 58 1.46e-04 GCTCGTGATG CTGATAAC AGTCGAATGG chrII:3440410-3440490 14 1.46e-04 TTACTATTTT CTGATAAC AATGAAGCAT chrV:6823528-6823608 9 1.46e-04 GTACTCTA CTGATAAC ATGCCCAATT chrIV:1256881-1256961 23 1.46e-04 TACATTTCAA CTGATAAC AGTGACAAAC chrX:13937547-13937627 29 1.46e-04 CATGTCTAGC CTGATAAC AATGTGTTAG chrII:5749924-5750004 34 1.46e-04 GCATTGCCAA CTGATAAC CCTCTTTCTT chrV:18191297-18191377 70 1.46e-04 TTCGACATTA CTGATAAC ACT chrV:19377201-19377281 17 1.65e-04 TTTTCTTCCT GTTATCAG TGTTTATAGC chrII:4674355-4674435 34 1.65e-04 CCGAACTTAT GTTATCAG TTCTTCCGTA chrV:13138116-13138196 53 1.65e-04 AAAAAAAAGT GTTATCAG TAATTGATGA chrII:14959427-14959507 46 1.65e-04 GCTGTCAATG GTTATCAG TGGTATTGTA chrII:5806701-5806781 22 1.65e-04 GAGGTTATCA GTTATCAG TTGATTGTGT chrIV:9159182-9159262 33 1.65e-04 GATTCAGGCA GTTATCAG AACACTATCA chrV:15226385-15226465 2 1.65e-04 T GTTATCAG TGACTTTTCC chrII:3992170-3992250 70 1.65e-04 CGAAGCTTTT GTTATCAG GAG chrIV:12912132-12912212 11 1.65e-04 TCTGAGTTAC GTTATCAG TTGAATCAAA chrII:12982985-12983065 3 2.05e-04 CC CTTATCAC TAGTGATCCT chrI:1022250-1022330 45 2.05e-04 TAGGCTGCTT CTTATCAC TGGAAAATGT chrII:4011675-4011755 5 2.05e-04 AATT CTTATCAC TTCAAAAAAC chrII:5553684-5553764 4 2.05e-04 TTT CTTATCAC ATCTGGAAAA chrX:5985882-5985962 21 2.05e-04 ATCTTCTTAT CTTATCAC TATCAAACTT chrII:2749767-2749847 18 2.05e-04 GACTCATTTT CTTATCAC TTCACCTCTC chrII:4966738-4966818 5 2.05e-04 CTTT CTTATCAC TGTTAACCAC chrV:13421863-13421943 12 2.05e-04 ATACGCTTCC CTTATCAC TGTTGAACTG chrII:5561565-5561645 46 2.05e-04 TGTCTCTCCT CTTATCAC TAGACACTTC chrV:13638158-13638238 27 2.05e-04 TGACAAATGT CTTATCAC ATCTAGTTCC chrIV:9540461-9540541 52 2.05e-04 TTGCGTAACA CTTATCAC TAAACGGCTT chrI:6203883-6203963 2 2.44e-04 T CTGATCAA CTAGATGGAA chrV:8288289-8288369 31 3.59e-04 ATTGATAAAT TTGATAAG ATTATGGTTT chrII:4803094-4803174 42 3.59e-04 TGATTAAAAA TTGATAAG AACGTTTAAT chrI:10382038-10382118 16 3.59e-04 CGTGTTTCTG TTGATAAG AGTGACGGCG chrX:10630572-10630652 72 3.59e-04 AGTGAGACTC TTGATAAG T chrX:9687417-9687497 38 3.59e-04 TTTCCTTGCA TTGATAAG GAGAAAATAC chrIV:6086636-6086716 45 3.59e-04 AGTACGCAGT TTGATAAG CTTCTTATCG chrV:1545858-1545938 22 3.59e-04 TGCACTCGAT TTGATAAG ACTAGCAGCT chrV:5882587-5882667 34 3.59e-04 TCAGCGTGTA TTGATAAG AAAGTCATGT chrIV:13008523-13008603 7 3.59e-04 TGACTC TTGATAAG CCAATTGTTA chrIV:3965161-3965241 72 3.59e-04 GTATTAAAAA TTGATAAG C chrV:8767655-8767735 1 3.59e-04 . TTGATAAG AGCATTCAAA chrIV:4148083-4148163 42 3.59e-04 TAGTACTTAT TTGATAAG ACATTATATT chrIV:12728304-12728384 41 4.28e-04 GCAGAAGTAG CTGATAAA CCGAAATTAT chrV:18461462-18461542 39 4.28e-04 ATCTAATACA ATGATAAG ATTTTATGTG chrII:6632161-6632241 36 4.28e-04 TATTTTTAGT ATGATAAG ATGGCAAAAC chrX:13163380-13163460 52 4.28e-04 GGTGGAGCAA CTGATAAA AAGTTCCAAA chrX:14194414-14194494 28 4.28e-04 AAATGGCACA ATGATAAG AAGAGAAGAA chrV:17243190-17243270 33 4.28e-04 ATGATTAAAA ATGATAAG AAAACGATAA chrIV:3819513-3819593 44 4.28e-04 AAAAAGTGGG ATGATAAG GACGATGGCT chrII:4657500-4657580 1 4.28e-04 . ATGATAAG AAGGCAAATT chrV:11403228-11403308 45 4.28e-04 ATATCAGACA CTGATAAA ATAGTTTAGA chrIII:10305476-10305556 34 4.28e-04 AAGCAAAATT CTGATAAA ATATTTATTG chrII:11860001-11860081 6 4.28e-04 GTAGT ATGATAAG GCCGGAAATT chrX:7139750-7139830 42 4.28e-04 GCAAAAAGCA CTGATAAA AGCTTATAAT chrV:7548147-7548227 68 4.47e-04 TCAAAATTTA GTGATAAC AAACG chrII:3990855-3990935 63 4.47e-04 TTAATACGCT GTGATAAC AAATTTCGAA chrV:12942236-12942316 63 4.47e-04 CTGCGAACTG GTGATAAC ACATCACGTG chrV:12634207-12634287 60 4.47e-04 ACCATCCGAA GTGATAAC TTAACAATTG chrX:6169395-6169475 39 4.82e-04 CAGAAGAGTC TTTATCAG TCACTACGCT chrV:8307865-8307945 48 4.82e-04 TGCTGACACG TTTATCAG CGATATAATA chrII:6178142-6178222 12 5.53e-04 AATTTAAATC ATTATCAG TCTGCAATTT chrIV:6048610-6048690 68 5.53e-04 ATTTGGTGGT CTTATCAA GAATG chrV:9202869-9202949 51 5.53e-04 TTTACGAGCA CTTATCAA TAGTTTCTCC chrV:11649402-11649482 14 5.53e-04 TTATTATAAA CTTATCAA GAAAATGATG chrIII:2266146-2266226 25 5.53e-04 AATATACATT CTTATCAA TTTTTTCGAG chrIV:12901776-12901856 41 5.53e-04 AGAAAACCAT CTTATCAA AATTTTCAGA chrII:1636138-1636218 5 5.53e-04 CGGG ATTATCAG TTTGTTGACG chrII:1621953-1622033 9 5.53e-04 AATGCGCT ATTATCAG TCAGGTGTAA chrV:15328200-15328280 33 5.53e-04 AATCAGAGCC CTTATCAA ATTTTTATCA chrII:12577945-12578025 68 5.72e-04 TCTACATAGC GTTATCAC TATTA chrIV:16525158-16525238 65 7.13e-04 AATATGATTT ATGATCAC AACTGATA chrX:6476697-6476777 26 7.13e-04 GTTTATTGAC TTTATAAG TGTTATCAAT chrIV:11489229-11489309 12 9.41e-04 GGAGTCAATA TTGATAAC TGAATGAAAA chrIV:12978473-12978553 57 9.41e-04 AGAAATTTCA GTGATAAA TGTTTATTTC chrV:15425550-15425630 60 1.01e-03 CGTAAAGAAA ATGATAAC TTTTCAAATT chrV:12745156-12745236 3 1.01e-03 TA ATGATAAC GCATGAAGAG chrI:1017489-1017569 33 1.01e-03 TTCAGGCGGA CTGATAAT AAATCATTGA chrV:12824935-12825015 73 1.01e-03 TATAAACCAA CTGATAAT chrV:17241414-17241494 65 1.01e-03 ATAATAGCAA CTGATAAT ATTTTTGA chrV:18957588-18957668 60 1.08e-03 TGACATTTTC TTTATCAC AAAAAAATAT chrII:1159827-1159907 51 1.08e-03 TGATTGTGTA GTTATCAA ATTTCGCAAT chrI:13138905-13138985 11 1.08e-03 AAGTTAGAGT GTTATCAA TATGATGAAA chrII:9010136-9010216 60 1.19e-03 GGGTGATAAT ATTATCAC CAAGAGCAGG chrII:1101566-1101646 43 1.19e-03 CACCCACCTG ATTATCAC CGATGACTCG chrIV:3922045-3922125 59 1.19e-03 TTTTAATACA CTTATCAT GATGTCACTG chrX:6429736-6429816 53 1.19e-03 TTTAGTACTG CTTATCAT CAGTACGGTG chrII:5747505-5747585 62 1.19e-03 TTCCTAAAAG CTTATCAT CAGAAACCTT chrV:5511898-5511978 36 1.22e-03 ACCGACTGTA ATGATCAA CTGATTCACT chrX:9539859-9539939 15 1.55e-03 GATAAAGCAC TTGATAAA AAGAGCACGT chrX:13884315-13884395 31 1.55e-03 CGATAAGCTG TTGATAAA AGAAAAAGGG chrX:5834918-5834998 28 1.62e-03 AACAAGAATT ATGATAAA AGATCACAGT chrIV:12921175-12921255 59 1.71e-03 TCCCGATTGC TTTATCAA TTTCACGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:535875-535955 1.1e-05 27_[+1]_45 chrV:6280225-6280305 3e-05 52_[+1]_20 chrII:1850955-1851035 3e-05 27_[+1]_45 chrX:13818955-13819035 3e-05 55_[+1]_17 chrIV:11771199-11771279 3e-05 37_[+1]_35 chrV:17090076-17090156 3e-05 66_[+1]_6 chrIV:14431035-14431115 3e-05 34_[+1]_38 chrII:3788517-3788597 3e-05 55_[+1]_17 chrIV:12906671-12906751 3e-05 43_[+1]_29 chrIV:15559254-15559334 3e-05 62_[+1]_10 chrV:9711296-9711376 3e-05 23_[+1]_49 chrX:15598854-15598934 3e-05 44_[+1]_28 chrIII:2050653-2050733 3e-05 9_[+1]_63 chrIV:12986126-12986206 3e-05 42_[+1]_30 chrV:16494504-16494584 3e-05 61_[+1]_11 chrIV:12871697-12871777 3e-05 49_[+1]_23 chrV:15322825-15322905 3e-05 54_[+1]_18 chrIV:12964801-12964881 3e-05 56_[+1]_16 chrIII:2239903-2239983 3e-05 40_[+1]_32 chrIV:15641047-15641127 3e-05 61_[+1]_11 chrV:15323581-15323661 3e-05 54_[+1]_18 chrIV:945745-945825 3e-05 29_[+1]_43 chrV:3936051-3936131 3e-05 5_[+1]_67 chrX:16166640-16166720 3e-05 47_[+1]_25 chrIII:2053592-2053672 3e-05 43_[+1]_29 chrII:6630986-6631066 3e-05 55_[+1]_17 chrX:6408444-6408524 3e-05 56_[+1]_16 chrIII:6495329-6495409 3e-05 35_[+1]_37 chrII:3990144-3990224 5e-05 43_[+1]_29 chrV:12822219-12822299 5e-05 43_[+1]_29 chrII:1576919-1576999 5e-05 57_[+1]_15 chrII:3295314-3295394 5e-05 29_[+1]_43 chrV:7364214-7364294 5e-05 37_[+1]_35 chrV:3482760-3482840 5e-05 20_[+1]_52 chrI:10063085-10063165 5e-05 1_[+1]_71 chrI:4099693-4099773 5e-05 58_[+1]_14 chrX:5465782-5465862 5e-05 12_[+1]_60 chrV:7186736-7186816 5e-05 28_[+1]_44 chrV:18324683-18324763 5e-05 35_[+1]_37 chrII:10281819-10281899 5e-05 45_[+1]_27 chrIV:12435595-12435675 5e-05 44_[+1]_28 chrIII:12446142-12446222 5e-05 37_[+1]_35 chrI:11249898-11249978 5e-05 19_[+1]_53 chrII:3815930-3816010 5e-05 67_[+1]_5 chrIV:12973497-12973577 5e-05 16_[+1]_56 chrII:943948-944028 5e-05 23_[+1]_49 chrII:2090796-2090876 5e-05 52_[+1]_20 chrV:17238985-17239065 5e-05 49_[+1]_23 chrIV:4152311-4152391 5e-05 13_[+1]_59 chrIV:1246916-1246996 5e-05 14_[+1]_58 chrV:2848691-2848771 5e-05 24_[+1]_48 chrII:1475486-1475566 6.1e-05 48_[+1]_24 chrII:4194275-4194355 0.00013 39_[+1]_33 chrII:5557304-5557384 0.00013 18_[+1]_54 chrII:7232652-7232732 0.00013 68_[+1]_4 chrII:11647003-11647083 0.00013 47_[+1]_25 chrV:11403831-11403911 0.00013 [+1]_72 chrII:11739382-11739462 0.00013 36_[+1]_36 chrIV:10964828-10964908 0.00013 25_[+1]_47 chrIII:1398365-1398445 0.00013 19_[+1]_53 chrIII:1289301-1289381 0.00013 55_[+1]_17 chrV:19230571-19230651 0.00013 58_[+1]_14 chrII:922923-923003 0.00013 34_[+1]_38 chrI:7355924-7356004 0.00015 65_[+1]_7 chrV:11236113-11236193 0.00015 57_[+1]_15 chrII:3440410-3440490 0.00015 13_[+1]_59 chrV:6823528-6823608 0.00015 8_[+1]_64 chrIV:1256881-1256961 0.00015 22_[+1]_50 chrX:13937547-13937627 0.00015 28_[+1]_44 chrII:5749924-5750004 0.00015 33_[+1]_39 chrV:18191297-18191377 0.00015 69_[+1]_3 chrV:19377201-19377281 0.00017 16_[+1]_56 chrII:4674355-4674435 0.00017 33_[+1]_39 chrV:13138116-13138196 0.00017 52_[+1]_20 chrII:14959427-14959507 0.00017 45_[+1]_27 chrII:5806701-5806781 0.00017 21_[+1]_51 chrIV:9159182-9159262 0.00017 32_[+1]_40 chrV:15226385-15226465 0.00017 1_[+1]_71 chrII:3992170-3992250 0.00017 69_[+1]_3 chrIV:12912132-12912212 0.00017 10_[+1]_62 chrII:12982985-12983065 0.0002 2_[+1]_70 chrI:1022250-1022330 0.0002 44_[+1]_28 chrII:4011675-4011755 0.0002 4_[+1]_68 chrII:5553684-5553764 0.0002 3_[+1]_69 chrX:5985882-5985962 0.0002 20_[+1]_52 chrII:2749767-2749847 0.0002 17_[+1]_55 chrII:4966738-4966818 0.0002 4_[+1]_68 chrV:13421863-13421943 0.0002 11_[+1]_61 chrII:5561565-5561645 0.0002 45_[+1]_27 chrV:13638158-13638238 0.0002 26_[+1]_46 chrIV:9540461-9540541 0.0002 51_[+1]_21 chrI:6203883-6203963 0.00024 1_[+1]_71 chrV:8288289-8288369 0.00036 30_[+1]_42 chrII:4803094-4803174 0.00036 41_[+1]_31 chrI:10382038-10382118 0.00036 15_[+1]_57 chrX:10630572-10630652 0.00036 71_[+1]_1 chrX:9687417-9687497 0.00036 37_[+1]_35 chrIV:6086636-6086716 0.00036 44_[+1]_28 chrV:1545858-1545938 0.00036 21_[+1]_51 chrV:5882587-5882667 0.00036 33_[+1]_39 chrIV:13008523-13008603 0.00036 6_[+1]_66 chrIV:3965161-3965241 0.00036 71_[+1]_1 chrV:8767655-8767735 0.00036 [+1]_72 chrIV:4148083-4148163 0.00036 41_[+1]_31 chrIV:12728304-12728384 0.00043 40_[+1]_32 chrV:18461462-18461542 0.00043 38_[+1]_34 chrII:6632161-6632241 0.00043 35_[+1]_37 chrX:13163380-13163460 0.00043 51_[+1]_21 chrX:14194414-14194494 0.00043 27_[+1]_45 chrV:17243190-17243270 0.00043 32_[+1]_40 chrIV:3819513-3819593 0.00043 43_[+1]_29 chrII:4657500-4657580 0.00043 [+1]_72 chrV:11403228-11403308 0.00043 44_[+1]_28 chrIII:10305476-10305556 0.00043 33_[+1]_39 chrII:11860001-11860081 0.00043 5_[+1]_67 chrX:7139750-7139830 0.00043 41_[+1]_31 chrV:7548147-7548227 0.00045 67_[+1]_5 chrII:3990855-3990935 0.00045 62_[+1]_10 chrV:12942236-12942316 0.00045 62_[+1]_10 chrV:12634207-12634287 0.00045 59_[+1]_13 chrX:6169395-6169475 0.00048 38_[+1]_34 chrV:8307865-8307945 0.00048 47_[+1]_25 chrII:6178142-6178222 0.00055 11_[+1]_61 chrIV:6048610-6048690 0.00055 67_[+1]_5 chrV:9202869-9202949 0.00055 50_[+1]_22 chrV:11649402-11649482 0.00055 13_[+1]_59 chrIII:2266146-2266226 0.00055 24_[+1]_48 chrIV:12901776-12901856 0.00055 40_[+1]_32 chrII:1636138-1636218 0.00055 4_[+1]_68 chrII:1621953-1622033 0.00055 8_[+1]_64 chrV:15328200-15328280 0.00055 32_[+1]_40 chrII:12577945-12578025 0.00057 67_[+1]_5 chrIV:16525158-16525238 0.00071 64_[+1]_8 chrX:6476697-6476777 0.00071 25_[+1]_47 chrIV:11489229-11489309 0.00094 11_[+1]_61 chrIV:12978473-12978553 0.00094 56_[+1]_16 chrV:15425550-15425630 0.001 59_[+1]_13 chrV:12745156-12745236 0.001 2_[+1]_70 chrI:1017489-1017569 0.001 32_[+1]_40 chrV:12824935-12825015 0.001 72_[+1] chrV:17241414-17241494 0.001 64_[+1]_8 chrV:18957588-18957668 0.0011 59_[+1]_13 chrII:1159827-1159907 0.0011 50_[+1]_22 chrI:13138905-13138985 0.0011 10_[+1]_62 chrII:9010136-9010216 0.0012 59_[+1]_13 chrII:1101566-1101646 0.0012 42_[+1]_30 chrIV:3922045-3922125 0.0012 58_[+1]_14 chrX:6429736-6429816 0.0012 52_[+1]_20 chrII:5747505-5747585 0.0012 61_[+1]_11 chrV:5511898-5511978 0.0012 35_[+1]_37 chrX:9539859-9539939 0.0016 14_[+1]_58 chrX:13884315-13884395 0.0016 30_[+1]_42 chrX:5834918-5834998 0.0016 27_[+1]_45 chrIV:12921175-12921255 0.0017 58_[+1]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTKATMAG width=8 seqs=154 chrIII:535875-535955 ( 28) CTGATCAG 1 chrV:6280225-6280305 ( 53) CTGATAAG 1 chrII:1850955-1851035 ( 28) CTGATAAG 1 chrX:13818955-13819035 ( 56) CTGATAAG 1 chrIV:11771199-11771279 ( 38) CTGATAAG 1 chrV:17090076-17090156 ( 67) CTGATAAG 1 chrIV:14431035-14431115 ( 35) CTGATAAG 1 chrII:3788517-3788597 ( 56) CTGATAAG 1 chrIV:12906671-12906751 ( 44) CTGATAAG 1 chrIV:15559254-15559334 ( 63) CTGATAAG 1 chrV:9711296-9711376 ( 24) CTGATAAG 1 chrX:15598854-15598934 ( 45) CTGATAAG 1 chrIII:2050653-2050733 ( 10) CTGATAAG 1 chrIV:12986126-12986206 ( 43) CTGATAAG 1 chrV:16494504-16494584 ( 62) CTGATAAG 1 chrIV:12871697-12871777 ( 50) CTGATAAG 1 chrV:15322825-15322905 ( 55) CTGATAAG 1 chrIV:12964801-12964881 ( 57) CTGATAAG 1 chrIII:2239903-2239983 ( 41) CTGATAAG 1 chrIV:15641047-15641127 ( 62) CTGATAAG 1 chrV:15323581-15323661 ( 55) CTGATAAG 1 chrIV:945745-945825 ( 30) CTGATAAG 1 chrV:3936051-3936131 ( 6) CTGATAAG 1 chrX:16166640-16166720 ( 48) CTGATAAG 1 chrIII:2053592-2053672 ( 44) CTGATAAG 1 chrII:6630986-6631066 ( 56) CTGATAAG 1 chrX:6408444-6408524 ( 57) CTGATAAG 1 chrIII:6495329-6495409 ( 36) CTGATAAG 1 chrII:3990144-3990224 ( 44) CTTATCAG 1 chrV:12822219-12822299 ( 44) CTTATCAG 1 chrII:1576919-1576999 ( 58) CTTATCAG 1 chrII:3295314-3295394 ( 30) CTTATCAG 1 chrV:7364214-7364294 ( 38) CTTATCAG 1 chrV:3482760-3482840 ( 21) CTTATCAG 1 chrI:10063085-10063165 ( 2) CTTATCAG 1 chrI:4099693-4099773 ( 59) CTTATCAG 1 chrX:5465782-5465862 ( 13) CTTATCAG 1 chrV:7186736-7186816 ( 29) CTTATCAG 1 chrV:18324683-18324763 ( 36) CTTATCAG 1 chrII:10281819-10281899 ( 46) CTTATCAG 1 chrIV:12435595-12435675 ( 45) CTTATCAG 1 chrIII:12446142-12446222 ( 38) CTTATCAG 1 chrI:11249898-11249978 ( 20) CTTATCAG 1 chrII:3815930-3816010 ( 68) CTTATCAG 1 chrIV:12973497-12973577 ( 17) CTTATCAG 1 chrII:943948-944028 ( 24) CTTATCAG 1 chrII:2090796-2090876 ( 53) CTTATCAG 1 chrV:17238985-17239065 ( 50) CTTATCAG 1 chrIV:4152311-4152391 ( 14) CTTATCAG 1 chrIV:1246916-1246996 ( 15) CTTATCAG 1 chrV:2848691-2848771 ( 25) CTTATCAG 1 chrII:1475486-1475566 ( 49) GTGATCAG 1 chrII:4194275-4194355 ( 40) GTGATAAG 1 chrII:5557304-5557384 ( 19) GTGATAAG 1 chrII:7232652-7232732 ( 69) GTGATAAG 1 chrII:11647003-11647083 ( 48) GTGATAAG 1 chrV:11403831-11403911 ( 1) GTGATAAG 1 chrII:11739382-11739462 ( 37) GTGATAAG 1 chrIV:10964828-10964908 ( 26) GTGATAAG 1 chrIII:1398365-1398445 ( 20) GTGATAAG 1 chrIII:1289301-1289381 ( 56) GTGATAAG 1 chrV:19230571-19230651 ( 59) GTGATAAG 1 chrII:922923-923003 ( 35) GTGATAAG 1 chrI:7355924-7356004 ( 66) CTGATAAC 1 chrV:11236113-11236193 ( 58) CTGATAAC 1 chrII:3440410-3440490 ( 14) CTGATAAC 1 chrV:6823528-6823608 ( 9) CTGATAAC 1 chrIV:1256881-1256961 ( 23) CTGATAAC 1 chrX:13937547-13937627 ( 29) CTGATAAC 1 chrII:5749924-5750004 ( 34) CTGATAAC 1 chrV:18191297-18191377 ( 70) CTGATAAC 1 chrV:19377201-19377281 ( 17) GTTATCAG 1 chrII:4674355-4674435 ( 34) GTTATCAG 1 chrV:13138116-13138196 ( 53) GTTATCAG 1 chrII:14959427-14959507 ( 46) GTTATCAG 1 chrII:5806701-5806781 ( 22) GTTATCAG 1 chrIV:9159182-9159262 ( 33) GTTATCAG 1 chrV:15226385-15226465 ( 2) GTTATCAG 1 chrII:3992170-3992250 ( 70) GTTATCAG 1 chrIV:12912132-12912212 ( 11) GTTATCAG 1 chrII:12982985-12983065 ( 3) CTTATCAC 1 chrI:1022250-1022330 ( 45) CTTATCAC 1 chrII:4011675-4011755 ( 5) CTTATCAC 1 chrII:5553684-5553764 ( 4) CTTATCAC 1 chrX:5985882-5985962 ( 21) CTTATCAC 1 chrII:2749767-2749847 ( 18) CTTATCAC 1 chrII:4966738-4966818 ( 5) CTTATCAC 1 chrV:13421863-13421943 ( 12) CTTATCAC 1 chrII:5561565-5561645 ( 46) CTTATCAC 1 chrV:13638158-13638238 ( 27) CTTATCAC 1 chrIV:9540461-9540541 ( 52) CTTATCAC 1 chrI:6203883-6203963 ( 2) CTGATCAA 1 chrV:8288289-8288369 ( 31) TTGATAAG 1 chrII:4803094-4803174 ( 42) TTGATAAG 1 chrI:10382038-10382118 ( 16) TTGATAAG 1 chrX:10630572-10630652 ( 72) TTGATAAG 1 chrX:9687417-9687497 ( 38) TTGATAAG 1 chrIV:6086636-6086716 ( 45) TTGATAAG 1 chrV:1545858-1545938 ( 22) TTGATAAG 1 chrV:5882587-5882667 ( 34) TTGATAAG 1 chrIV:13008523-13008603 ( 7) TTGATAAG 1 chrIV:3965161-3965241 ( 72) TTGATAAG 1 chrV:8767655-8767735 ( 1) TTGATAAG 1 chrIV:4148083-4148163 ( 42) TTGATAAG 1 chrIV:12728304-12728384 ( 41) CTGATAAA 1 chrV:18461462-18461542 ( 39) ATGATAAG 1 chrII:6632161-6632241 ( 36) ATGATAAG 1 chrX:13163380-13163460 ( 52) CTGATAAA 1 chrX:14194414-14194494 ( 28) ATGATAAG 1 chrV:17243190-17243270 ( 33) ATGATAAG 1 chrIV:3819513-3819593 ( 44) ATGATAAG 1 chrII:4657500-4657580 ( 1) ATGATAAG 1 chrV:11403228-11403308 ( 45) CTGATAAA 1 chrIII:10305476-10305556 ( 34) CTGATAAA 1 chrII:11860001-11860081 ( 6) ATGATAAG 1 chrX:7139750-7139830 ( 42) CTGATAAA 1 chrV:7548147-7548227 ( 68) GTGATAAC 1 chrII:3990855-3990935 ( 63) GTGATAAC 1 chrV:12942236-12942316 ( 63) GTGATAAC 1 chrV:12634207-12634287 ( 60) GTGATAAC 1 chrX:6169395-6169475 ( 39) TTTATCAG 1 chrV:8307865-8307945 ( 48) TTTATCAG 1 chrII:6178142-6178222 ( 12) ATTATCAG 1 chrIV:6048610-6048690 ( 68) CTTATCAA 1 chrV:9202869-9202949 ( 51) CTTATCAA 1 chrV:11649402-11649482 ( 14) CTTATCAA 1 chrIII:2266146-2266226 ( 25) CTTATCAA 1 chrIV:12901776-12901856 ( 41) CTTATCAA 1 chrII:1636138-1636218 ( 5) ATTATCAG 1 chrII:1621953-1622033 ( 9) ATTATCAG 1 chrV:15328200-15328280 ( 33) CTTATCAA 1 chrII:12577945-12578025 ( 68) GTTATCAC 1 chrIV:16525158-16525238 ( 65) ATGATCAC 1 chrX:6476697-6476777 ( 26) TTTATAAG 1 chrIV:11489229-11489309 ( 12) TTGATAAC 1 chrIV:12978473-12978553 ( 57) GTGATAAA 1 chrV:15425550-15425630 ( 60) ATGATAAC 1 chrV:12745156-12745236 ( 3) ATGATAAC 1 chrI:1017489-1017569 ( 33) CTGATAAT 1 chrV:12824935-12825015 ( 73) CTGATAAT 1 chrV:17241414-17241494 ( 65) CTGATAAT 1 chrV:18957588-18957668 ( 60) TTTATCAC 1 chrII:1159827-1159907 ( 51) GTTATCAA 1 chrI:13138905-13138985 ( 11) GTTATCAA 1 chrII:9010136-9010216 ( 60) ATTATCAC 1 chrII:1101566-1101646 ( 43) ATTATCAC 1 chrIV:3922045-3922125 ( 59) CTTATCAT 1 chrX:6429736-6429816 ( 53) CTTATCAT 1 chrII:5747505-5747585 ( 62) CTTATCAT 1 chrV:5511898-5511978 ( 36) ATGATCAA 1 chrX:9539859-9539939 ( 15) TTGATAAA 1 chrX:13884315-13884395 ( 31) TTGATAAA 1 chrX:5834918-5834998 ( 28) ATGATAAA 1 chrIV:12921175-12921255 ( 59) TTTATCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.33352 E= 1.3e-092 -154 166 8 -130 -1391 -1391 -1391 164 -1391 -1391 170 40 164 -1391 -1391 -1391 -1391 -1391 -1391 164 79 131 -1391 -1391 164 -1391 -1391 -1391 -130 15 182 -304 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 154 E= 1.3e-092 0.110390 0.571429 0.188312 0.129870 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.577922 0.422078 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.551948 0.448052 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.129870 0.201299 0.629870 0.038961 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 regular expression -------------------------------------------------------------------------------- CT[GT]AT[AC]A[GC] -------------------------------------------------------------------------------- Time 5.01 secs. ******************************************************************************** ******************************************************************************** MOTIF YTCTTATC MEME-2 width = 8 sites = 31 llr = 274 E-value = 1.6e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTCTTATC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2::::a:: pos.-specific C 32a::::a probability G 1::::::: matrix T 58:aa:a: bits 2.5 * * 2.2 * * 2.0 * * 1.7 ****** Relative 1.5 ****** Entropy 1.2 ****** (12.7 bits) 1.0 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TTCTTATC consensus CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTTATC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:5332502-5332582 12 2.01e-05 TGATTTGTGT CTCTTATC CAAACATTGG chrII:6123161-6123241 36 2.01e-05 CATCCCAGTA CTCTTATC GCTGCGTCTC chrV:9202869-9202949 27 2.01e-05 CCGGATTTGT CTCTTATC TTACAGTTTA chrV:13138116-13138196 24 2.01e-05 TTATTTGACA CTCTTATC TTAATAATTG chrIV:15559254-15559334 47 2.01e-05 AAGTGCTAAC CTCTTATC AGTTTCCTCT chrIV:12973497-12973577 40 2.01e-05 GTTCCTTATT CTCTTATC AACAACAATT chrV:16232317-16232397 19 2.01e-05 TTATCGATGA CTCTTATC GCGATTGCAA chrII:3318977-3319057 12 2.01e-05 ATTGTTTGAA CTCTTATC TCGTTTCTGA chrX:3110754-3110834 7 5.59e-05 TCAATT TTCTTATC GCAAAAACGA chrIV:6086636-6086716 54 5.59e-05 TTTGATAAGC TTCTTATC GACTCGATAT chrII:14055862-14055942 1 5.59e-05 . TTCTTATC GTTTCTCCTT chrV:12824935-12825015 26 5.59e-05 AAAACTAGAG TTCTTATC ATACAAACCA chrI:6203883-6203963 40 5.59e-05 AATGCAACAT TTCTTATC GCAGAATTCG chrX:5985882-5985962 6 5.59e-05 AGCAA TTCTTATC TTCTTATCTT chrII:3992170-3992250 21 5.59e-05 GTCACAACTA TTCTTATC AAACTATGCT chrV:47970-48050 1 5.59e-05 . TTCTTATC TTAAAACTTA chrII:1670421-1670501 1 5.59e-05 . TTCTTATC TTGAAAGAAG chrV:2848691-2848771 37 5.59e-05 TATCAGTTGT TTCTTATC ACAATATTCA chrV:17662437-17662517 62 6.72e-05 CGATGCACCA CCCTTATC GTCAGAATTA chrII:1850955-1851035 37 8.74e-05 CCTGATAAGA TCCTTATC ATTACGCAGT chrII:12982985-12983065 17 8.74e-05 TCACTAGTGA TCCTTATC AATTTCCATT chrII:1475486-1475566 30 8.74e-05 ACAAAAAGTG TCCTTATC ACATGCTGAT chrV:16608655-16608735 23 8.74e-05 ACATGCTTCC TCCTTATC TTCAACCACA chrIV:11771199-11771279 4 1.23e-04 ATG ATCTTATC AGTGATGGAA chrII:4777093-4777173 35 1.23e-04 ACAGTATATT ATCTTATC TTTGTCGTAA chrX:13937547-13937627 2 1.23e-04 A ATCTTATC ACGACCCATC chrX:6476697-6476777 53 1.23e-04 TGTCGCTGTT ATCTTATC TGTTAATAAA chrIV:4027685-4027765 25 1.43e-04 TCAGATGGGG GTCTTATC TTGAGCGAAT chrII:9010136-9010216 1 1.43e-04 . GTCTTATC GCACACTGGA chrIII:535875-535955 11 1.63e-04 AGTTTTTGTC ACCTTATC AGTTTGACAC chrII:3788517-3788597 32 1.63e-04 CACCTCTATC ACCTTATC AGTTGAGCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTTATC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:5332502-5332582 2e-05 11_[+2]_61 chrII:6123161-6123241 2e-05 35_[+2]_37 chrV:9202869-9202949 2e-05 26_[+2]_46 chrV:13138116-13138196 2e-05 23_[+2]_49 chrIV:15559254-15559334 2e-05 46_[+2]_26 chrIV:12973497-12973577 2e-05 39_[+2]_33 chrV:16232317-16232397 2e-05 18_[+2]_54 chrII:3318977-3319057 2e-05 11_[+2]_61 chrX:3110754-3110834 5.6e-05 6_[+2]_66 chrIV:6086636-6086716 5.6e-05 53_[+2]_19 chrII:14055862-14055942 5.6e-05 [+2]_72 chrV:12824935-12825015 5.6e-05 25_[+2]_47 chrI:6203883-6203963 5.6e-05 39_[+2]_33 chrX:5985882-5985962 5.6e-05 5_[+2]_67 chrII:3992170-3992250 5.6e-05 20_[+2]_52 chrV:47970-48050 5.6e-05 [+2]_72 chrII:1670421-1670501 5.6e-05 [+2]_72 chrV:2848691-2848771 5.6e-05 36_[+2]_36 chrV:17662437-17662517 6.7e-05 61_[+2]_11 chrII:1850955-1851035 8.7e-05 36_[+2]_36 chrII:12982985-12983065 8.7e-05 16_[+2]_56 chrII:1475486-1475566 8.7e-05 29_[+2]_43 chrV:16608655-16608735 8.7e-05 22_[+2]_50 chrIV:11771199-11771279 0.00012 3_[+2]_69 chrII:4777093-4777173 0.00012 34_[+2]_38 chrX:13937547-13937627 0.00012 1_[+2]_71 chrX:6476697-6476777 0.00012 52_[+2]_20 chrIV:4027685-4027765 0.00014 24_[+2]_48 chrII:9010136-9010216 0.00014 [+2]_72 chrIII:535875-535955 0.00016 10_[+2]_62 chrII:3788517-3788597 0.00016 31_[+2]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTTATC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTCTTATC width=8 seqs=31 chrII:5332502-5332582 ( 12) CTCTTATC 1 chrII:6123161-6123241 ( 36) CTCTTATC 1 chrV:9202869-9202949 ( 27) CTCTTATC 1 chrV:13138116-13138196 ( 24) CTCTTATC 1 chrIV:15559254-15559334 ( 47) CTCTTATC 1 chrIV:12973497-12973577 ( 40) CTCTTATC 1 chrV:16232317-16232397 ( 19) CTCTTATC 1 chrII:3318977-3319057 ( 12) CTCTTATC 1 chrX:3110754-3110834 ( 7) TTCTTATC 1 chrIV:6086636-6086716 ( 54) TTCTTATC 1 chrII:14055862-14055942 ( 1) TTCTTATC 1 chrV:12824935-12825015 ( 26) TTCTTATC 1 chrI:6203883-6203963 ( 40) TTCTTATC 1 chrX:5985882-5985962 ( 6) TTCTTATC 1 chrII:3992170-3992250 ( 21) TTCTTATC 1 chrV:47970-48050 ( 1) TTCTTATC 1 chrII:1670421-1670501 ( 1) TTCTTATC 1 chrV:2848691-2848771 ( 37) TTCTTATC 1 chrV:17662437-17662517 ( 62) CCCTTATC 1 chrII:1850955-1851035 ( 37) TCCTTATC 1 chrII:12982985-12983065 ( 17) TCCTTATC 1 chrII:1475486-1475566 ( 30) TCCTTATC 1 chrV:16608655-16608735 ( 23) TCCTTATC 1 chrIV:11771199-11771279 ( 4) ATCTTATC 1 chrII:4777093-4777173 ( 35) ATCTTATC 1 chrX:13937547-13937627 ( 2) ATCTTATC 1 chrX:6476697-6476777 ( 53) ATCTTATC 1 chrIV:4027685-4027765 ( 25) GTCTTATC 1 chrII:9010136-9010216 ( 1) GTCTTATC 1 chrIII:535875-535955 ( 11) ACCTTATC 1 chrII:3788517-3788597 ( 32) ACCTTATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTTATC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4993 E= 1.6e-005 -73 68 -147 49 -1160 32 -1160 127 -1160 247 -1160 -1160 -1160 -1160 -1160 164 -1160 -1160 -1160 164 164 -1160 -1160 -1160 -1160 -1160 -1160 164 -1160 247 -1160 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTTATC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.6e-005 0.193548 0.290323 0.064516 0.451613 0.000000 0.225806 0.000000 0.774194 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTTATC MEME-2 regular expression -------------------------------------------------------------------------------- [TC][TC]CTTATC -------------------------------------------------------------------------------- Time 8.59 secs. ******************************************************************************** ******************************************************************************** MOTIF ACTGATAA MEME-3 width = 8 sites = 21 llr = 193 E-value = 6.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTGATAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:::a:a5 pos.-specific C :a:::::1 probability G :::a:::2 matrix T ::a::a:2 bits 2.5 * * 2.2 * * 2.0 * * 1.7 ******* Relative 1.5 ******* Entropy 1.2 ******* (13.3 bits) 1.0 ******* 0.7 ******* 0.5 ******* 0.2 ******* 0.0 -------- Multilevel ACTGATAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGATAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:11771199-11771279 46 3.48e-05 AACTGATAAG ACTGATAA ATAATATATC chrV:7364214-7364294 23 3.48e-05 CTGTCAGTTG ACTGATAA AAAAGCTCTT chrII:11647003-11647083 59 3.48e-05 TGATAAGCTT ACTGATAA TGATTATAAT chrII:4966738-4966818 60 3.48e-05 GCTTTACTCC ACTGATAA TGAGATATCA chrIV:15641047-15641127 41 3.48e-05 ACGTCAACAA ACTGATAA TCAGTTTCCG chrV:17241414-17241494 51 3.48e-05 ACTAAAAGAA ACTGATAA TAGCAACTGA chrX:16166640-16166720 8 3.48e-05 TCCGTTT ACTGATAA CCCATTCAAG chrIII:2053592-2053672 34 3.48e-05 GTCACCTCCA ACTGATAA CGCTGATAAG chrIII:6495329-6495409 68 3.48e-05 CACGTTTCAA ACTGATAA GAGAT chrIV:3922045-3922125 73 3.48e-05 TCATGATGTC ACTGATAA chrV:12822219-12822299 63 5.42e-05 GGAAACCGGC ACTGATAG TGAGTACACT chrV:19846600-19846680 63 5.42e-05 ATTTTAATTG ACTGATAG TAGGCAAAGA chrX:3110754-3110834 40 5.42e-05 TCATTATGGG ACTGATAG TCTGGGTAGG chrV:19319751-19319831 34 5.42e-05 TTCTTTGCTC ACTGATAG CGGAAAAATG chrV:18246233-18246313 25 7.39e-05 AAGCCTGCAA ACTGATAC GCATGTTGTG chrV:17238985-17239065 7 7.39e-05 TGAATC ACTGATAC CGTTTCATTT chrIV:4121191-4121271 1 7.39e-05 . ACTGATAC GGCAAACTCT chrI:13815894-13815974 19 1.09e-04 CAGACGTGAA ACTGATAT CAGAAATTCA chrV:12745156-12745236 37 1.09e-04 TAAATGGAGC ACTGATAT CACATACTTT chrV:16610260-16610340 41 1.09e-04 ACGTTAAACA ACTGATAT GACTTACAAT chrV:5882587-5882667 17 1.09e-04 CAGGGTGATA ACTGATAT CAGCGTGTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGATAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:11771199-11771279 3.5e-05 45_[+3]_27 chrV:7364214-7364294 3.5e-05 22_[+3]_50 chrII:11647003-11647083 3.5e-05 58_[+3]_14 chrII:4966738-4966818 3.5e-05 59_[+3]_13 chrIV:15641047-15641127 3.5e-05 40_[+3]_32 chrV:17241414-17241494 3.5e-05 50_[+3]_22 chrX:16166640-16166720 3.5e-05 7_[+3]_65 chrIII:2053592-2053672 3.5e-05 33_[+3]_39 chrIII:6495329-6495409 3.5e-05 67_[+3]_5 chrIV:3922045-3922125 3.5e-05 72_[+3] chrV:12822219-12822299 5.4e-05 62_[+3]_10 chrV:19846600-19846680 5.4e-05 62_[+3]_10 chrX:3110754-3110834 5.4e-05 39_[+3]_33 chrV:19319751-19319831 5.4e-05 33_[+3]_39 chrV:18246233-18246313 7.4e-05 24_[+3]_48 chrV:17238985-17239065 7.4e-05 6_[+3]_66 chrIV:4121191-4121271 7.4e-05 [+3]_72 chrI:13815894-13815974 0.00011 18_[+3]_54 chrV:12745156-12745236 0.00011 36_[+3]_36 chrV:16610260-16610340 0.00011 40_[+3]_32 chrV:5882587-5882667 0.00011 16_[+3]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGATAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTGATAA width=8 seqs=21 chrIV:11771199-11771279 ( 46) ACTGATAA 1 chrV:7364214-7364294 ( 23) ACTGATAA 1 chrII:11647003-11647083 ( 59) ACTGATAA 1 chrII:4966738-4966818 ( 60) ACTGATAA 1 chrIV:15641047-15641127 ( 41) ACTGATAA 1 chrV:17241414-17241494 ( 51) ACTGATAA 1 chrX:16166640-16166720 ( 8) ACTGATAA 1 chrIII:2053592-2053672 ( 34) ACTGATAA 1 chrIII:6495329-6495409 ( 68) ACTGATAA 1 chrIV:3922045-3922125 ( 73) ACTGATAA 1 chrV:12822219-12822299 ( 63) ACTGATAG 1 chrV:19846600-19846680 ( 63) ACTGATAG 1 chrX:3110754-3110834 ( 40) ACTGATAG 1 chrV:19319751-19319831 ( 34) ACTGATAG 1 chrV:18246233-18246313 ( 25) ACTGATAC 1 chrV:17238985-17239065 ( 7) ACTGATAC 1 chrIV:4121191-4121271 ( 1) ACTGATAC 1 chrI:13815894-13815974 ( 19) ACTGATAT 1 chrV:12745156-12745236 ( 37) ACTGATAT 1 chrV:16610260-16610340 ( 41) ACTGATAT 1 chrV:5882587-5882667 ( 17) ACTGATAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGATAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0668 E= 6.6e+000 164 -1104 -1104 -1104 -1104 247 -1104 -1104 -1104 -1104 -1104 164 -1104 -1104 249 -1104 164 -1104 -1104 -1104 -1104 -1104 -1104 164 164 -1104 -1104 -1104 57 -34 9 -75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGATAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 6.6e+000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.476190 0.142857 0.190476 0.190476 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGATAA MEME-3 regular expression -------------------------------------------------------------------------------- ACTGATAA -------------------------------------------------------------------------------- Time 12.04 secs. ******************************************************************************** ******************************************************************************** MOTIF GSGSGGTG MEME-4 width = 8 sites = 6 llr = 69 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSGSGGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :3:5::2: probability G a7a5aa:a matrix T ::::::8: bits 2.5 * * ** * 2.2 * * ** * 2.0 * * ** * 1.7 * * ** * Relative 1.5 ****** * Entropy 1.2 ******** (16.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGGTG consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGSGGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:17616961-17617041 62 1.82e-06 TGGAGGGGGA GGGGGGTG GAAGTGTGGA chrIV:8452030-8452110 14 1.82e-06 GACCAGAACA GGGGGGTG GAGAATGCTC chrII:5806701-5806781 3 3.67e-06 CC GGGCGGTG AGAGGTTATC chrII:1386636-1386716 32 5.51e-06 TTGCATACCC GCGGGGTG TTCTATGAAC chrI:10382038-10382118 41 7.39e-06 GCGGTGGCGG GCGCGGTG CTGGTCGGTA chrIII:12446142-12446222 18 9.46e-06 AAATTCCGCT GGGCGGCG CACATGTGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGSGGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:17616961-17617041 1.8e-06 61_[+4]_11 chrIV:8452030-8452110 1.8e-06 13_[+4]_59 chrII:5806701-5806781 3.7e-06 2_[+4]_70 chrII:1386636-1386716 5.5e-06 31_[+4]_41 chrI:10382038-10382118 7.4e-06 40_[+4]_32 chrIII:12446142-12446222 9.5e-06 17_[+4]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGSGGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSGSGGTG width=8 seqs=6 chrV:17616961-17617041 ( 62) GGGGGGTG 1 chrIV:8452030-8452110 ( 14) GGGGGGTG 1 chrII:5806701-5806781 ( 3) GGGCGGTG 1 chrII:1386636-1386716 ( 32) GCGGGGTG 1 chrI:10382038-10382118 ( 41) GCGCGGTG 1 chrIII:12446142-12446222 ( 18) GGGCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGSGGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.67 E= 1.8e+003 -923 -923 248 -923 -923 88 190 -923 -923 -923 248 -923 -923 147 149 -923 -923 -923 248 -923 -923 -923 248 -923 -923 -12 -923 138 -923 -923 248 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGSGGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.8e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGSGGTG MEME-4 regular expression -------------------------------------------------------------------------------- G[GC]G[CG]GGTG -------------------------------------------------------------------------------- Time 15.41 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGSCCGC MEME-5 width = 8 sites = 4 llr = 50 E-value = 3.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGSCCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:5aa3a probability G ::a5::8: matrix T :::::::: bits 2.5 *** ** * 2.2 *** ** * 2.0 *** ** * 1.7 *** **** Relative 1.5 ******** Entropy 1.2 ******** (18.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCCGC consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGSCCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:1022250-1022330 1 2.21e-06 . CCGCCCGC CGTATTTCGG chrX:13884315-13884395 8 2.21e-06 ATCACAG CCGGCCGC TTCTCCGATA chrII:5747505-5747585 3 2.21e-06 TC CCGGCCGC AAATTGTTTG chrIV:8452030-8452110 31 4.46e-06 GGAGAATGCT CCGCCCCC ATAATATCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGSCCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:1022250-1022330 2.2e-06 [+5]_72 chrX:13884315-13884395 2.2e-06 7_[+5]_65 chrII:5747505-5747585 2.2e-06 2_[+5]_70 chrIV:8452030-8452110 4.5e-06 30_[+5]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGSCCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGSCCGC width=8 seqs=4 chrI:1022250-1022330 ( 1) CCGCCCGC 1 chrX:13884315-13884395 ( 8) CCGGCCGC 1 chrII:5747505-5747585 ( 3) CCGGCCGC 1 chrIV:8452030-8452110 ( 31) CCGCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGSCCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.8924 E= 3.5e+003 -865 246 -865 -865 -865 246 -865 -865 -865 -865 248 -865 -865 146 148 -865 -865 246 -865 -865 -865 246 -865 -865 -865 47 207 -865 -865 246 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGSCCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.5e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGSCCGC MEME-5 regular expression -------------------------------------------------------------------------------- CCG[CG]CC[GC]C -------------------------------------------------------------------------------- Time 18.76 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:12274520-12274600 3.07e-01 80 chrII:4203928-4204008 7.45e-01 80 chrV:2848691-2848771 6.69e-03 24_[+1(5.01e-05)]_4_[+2(5.59e-05)]_\ 36 chrII:5747505-5747585 2.33e-03 2_[+5(2.21e-06)]_70 chrV:15448585-15448665 2.62e-01 80 chrII:922923-923003 2.13e-02 80 chrIV:1228811-1228891 8.54e-01 80 chrII:5086257-5086337 9.80e-01 80 chrV:17014212-17014292 8.57e-01 80 chrV:15328200-15328280 2.09e-02 30_[+2(6.72e-05)]_42 chrII:1621953-1622033 2.39e-02 80 chrII:1636138-1636218 1.67e-01 80 chrX:7139750-7139830 1.47e-02 40_[+3(3.48e-05)]_32 chrII:11860001-11860081 3.22e-01 80 chrX:6429736-6429816 1.73e-02 80 chrV:18191297-18191377 1.72e-03 68_[+3(3.48e-05)]_4 chrIV:3922045-3922125 3.91e-03 72_[+3(3.48e-05)] chrIV:12972177-12972257 5.07e-01 80 chrIV:12969311-12969391 4.86e-01 80 chrIV:9540461-9540541 2.27e-02 80 chrV:12634207-12634287 6.73e-02 80 chrIV:4148083-4148163 2.74e-01 80 chrII:13997666-13997746 8.01e-01 80 chrIV:8452030-8452110 1.40e-04 13_[+4(1.82e-06)]_9_[+5(4.46e-06)]_\ 42 chrX:10694447-10694527 9.99e-01 80 chrIII:6495329-6495409 5.60e-03 35_[+1(3.03e-05)]_25_[+1(3.03e-05)]_\ 4 chrV:16840449-16840529 4.80e-01 80 chrII:3318977-3319057 4.22e-02 11_[+2(2.01e-05)]_61 chrII:5744487-5744567 7.35e-01 80 chrIV:1246916-1246996 2.48e-02 14_[+1(5.01e-05)]_58 chrV:8767655-8767735 3.00e-01 80 chrIV:12912132-12912212 1.32e-01 80 chrX:11251141-11251221 6.47e-01 80 chrI:13138905-13138985 4.63e-01 80 chrIV:12901776-12901856 4.41e-02 80 chrII:5749924-5750004 5.99e-03 32_[+3(3.48e-05)]_40 chrIII:12445454-12445534 5.19e-02 80 chrX:6476697-6476777 4.17e-02 80 chrV:9146379-9146459 2.13e-01 80 chrIV:3965161-3965241 2.24e-01 80 chrX:6408444-6408524 3.71e-03 56_[+1(3.03e-05)]_16 chrII:6630986-6631066 4.06e-03 55_[+1(3.03e-05)]_17 chrII:5109809-5109889 7.14e-01 80 chrV:16232317-16232397 7.79e-02 18_[+2(2.01e-05)]_16_[+2(6.72e-05)]_\ 30 chrV:19230571-19230651 4.49e-02 80 chrIV:13008523-13008603 1.98e-01 80 chrX:13884315-13884395 7.23e-04 7_[+5(2.21e-06)]_65 chrII:5022546-5022626 8.25e-01 80 chrV:12942236-12942316 3.51e-01 80 chrII:5186986-5187066 2.17e-01 80 chrX:13937547-13937627 2.49e-04 80 chrIII:2053592-2053672 3.20e-03 33_[+3(3.48e-05)]_2_[+1(3.03e-05)]_\ 29 chrX:16166640-16166720 3.32e-03 7_[+3(3.48e-05)]_32_[+1(3.03e-05)]_\ 25 chrIV:4152311-4152391 5.10e-03 13_[+1(5.01e-05)]_59 chrII:5234894-5234974 4.43e-01 80 chrIII:1289301-1289381 2.09e-02 80 chrII:3990855-3990935 2.71e-01 80 chrIV:4121191-4121271 2.51e-02 [+3(7.39e-05)]_72 chrIV:3963575-3963655 9.47e-01 80 chrIII:1398365-1398445 4.32e-02 80 chrV:5882587-5882667 1.50e-02 80 chrIV:1256881-1256961 2.07e-03 21_[+3(3.48e-05)]_51 chrV:17241414-17241494 4.23e-03 50_[+3(3.48e-05)]_5_[+3(3.48e-05)]_\ 9 chrV:17238985-17239065 1.80e-03 6_[+3(7.39e-05)]_35_[+1(5.01e-05)]_\ 23 chrII:1101566-1101646 8.73e-03 27_[+5(1.64e-05)]_45 chrV:13638158-13638238 1.87e-02 80 chrX:5834918-5834998 3.29e-01 80 chrII:4777093-4777173 1.75e-01 80 chrV:8307865-8307945 1.62e-01 80 chrIV:10964828-10964908 2.05e-02 80 chrV:1545858-1545938 2.20e-01 80 chrII:2090796-2090876 4.45e-03 52_[+1(5.01e-05)]_20 chrII:943948-944028 1.63e-03 23_[+1(5.01e-05)]_49 chrV:3936051-3936131 1.52e-03 5_[+1(3.03e-05)]_67 chrX:11132447-11132527 4.40e-02 80 chrIV:945745-945825 6.97e-04 29_[+1(3.03e-05)]_43 chrII:1670421-1670501 4.79e-02 [+2(5.59e-05)]_72 chrIV:11760735-11760815 7.66e-01 80 chrIV:12973497-12973577 4.55e-04 16_[+1(5.01e-05)]_15_[+2(2.01e-05)]_\ 33 chrV:15323581-15323661 1.12e-03 54_[+1(3.03e-05)]_18 chrIII:10305476-10305556 7.59e-02 80 chrII:4967835-4967915 5.97e-01 80 chrII:11739382-11739462 2.74e-02 80 chrX:6169395-6169475 7.03e-02 80 chrIV:15641047-15641127 1.35e-04 40_[+3(3.48e-05)]_13_[+1(3.03e-05)]_\ 11 chrII:5561565-5561645 8.86e-03 43_[+2(2.01e-05)]_29 chrV:11403228-11403308 1.03e-02 43_[+3(3.48e-05)]_29 chrV:47970-48050 8.99e-02 [+2(5.59e-05)]_72 chrII:3815930-3816010 7.64e-03 67_[+1(5.01e-05)]_5 chrV:18246233-18246313 8.72e-02 24_[+3(7.39e-05)]_48 chrI:7758232-7758312 6.84e-02 80 chrII:1159827-1159907 5.26e-01 80 chrIV:12978473-12978553 1.16e-01 80 chrIII:8594255-8594335 4.39e-01 80 chrIII:2239903-2239983 5.94e-04 40_[+1(3.03e-05)]_32 chrI:11249898-11249978 9.12e-03 19_[+1(5.01e-05)]_53 chrIV:12964801-12964881 5.40e-04 56_[+1(3.03e-05)]_16 chrV:13421863-13421943 1.21e-02 9_[+2(6.72e-05)]_63 chrII:13980296-13980376 6.30e-01 80 chrIII:1295305-1295385 9.26e-01 80 chrV:11403831-11403911 9.75e-02 80 chrV:16610260-16610340 1.23e-01 80 chrIII:12446142-12446222 3.07e-04 17_[+4(9.46e-06)]_12_[+1(5.01e-05)]_\ 35 chrX:6924625-6924705 3.05e-01 80 chrV:15322825-15322905 2.80e-03 54_[+1(3.03e-05)]_18 chrV:17240739-17240819 5.78e-01 80 chrV:6823528-6823608 8.22e-03 7_[+3(3.48e-05)]_65 chrV:16608655-16608735 1.72e-01 22_[+2(8.74e-05)]_50 chrIV:12435595-12435675 9.09e-03 44_[+1(5.01e-05)]_28 chrIV:12871697-12871777 2.42e-03 49_[+1(3.03e-05)]_23 chrIV:12921175-12921255 3.29e-01 80 chrII:4966738-4966818 4.55e-04 2_[+2(5.59e-05)]_49_[+3(3.48e-05)]_\ 13 chrII:4657500-4657580 8.90e-02 80 chrII:11647003-11647083 1.33e-02 58_[+3(3.48e-05)]_14 chrI:4155708-4155788 3.84e-01 80 chrII:3992170-3992250 1.57e-02 20_[+2(5.59e-05)]_52 chrIV:3819513-3819593 6.32e-02 80 chrII:10281819-10281899 9.23e-03 45_[+1(5.01e-05)]_27 chrV:16494504-16494584 2.55e-02 61_[+1(3.03e-05)]_11 chrII:10403167-10403247 4.86e-01 80 chrV:17616961-17617041 2.93e-03 61_[+4(1.82e-06)]_11 chrIV:13727321-13727401 6.96e-01 80 chrV:18324683-18324763 2.41e-03 33_[+2(2.01e-05)]_39 chrII:2749767-2749847 9.29e-03 15_[+2(5.59e-05)]_57 chrV:7186736-7186816 9.19e-03 28_[+1(5.01e-05)]_44 chrV:19846400-19846480 8.58e-01 80 chrV:7548147-7548227 1.32e-01 80 chrIV:12986126-12986206 7.42e-04 42_[+1(3.03e-05)]_30 chrIII:2050653-2050733 6.86e-03 9_[+1(3.03e-05)]_63 chrX:5985882-5985962 6.46e-03 5_[+2(5.59e-05)]_[+2(5.59e-05)]_59 chrIV:7521023-7521103 5.98e-01 80 chrII:9010136-9010216 1.47e-02 80 chrIV:1075646-1075726 2.26e-01 80 chrV:17243190-17243270 6.92e-02 80 chrX:5465782-5465862 3.10e-03 12_[+1(5.01e-05)]_60 chrX:15598854-15598934 1.34e-03 44_[+1(3.03e-05)]_28 chrV:9711296-9711376 8.45e-04 23_[+1(3.03e-05)]_49 chrV:15226385-15226465 1.69e-02 80 chrI:4099693-4099773 2.92e-03 58_[+1(5.01e-05)]_14 chrIV:15559254-15559334 1.54e-04 46_[+2(2.01e-05)]_8_[+1(3.03e-05)]_\ 10 chrV:10732140-10732220 3.16e-01 80 chrX:11351426-11351506 4.83e-01 80 chrIV:9159182-9159262 7.66e-02 80 chrI:6203883-6203963 6.00e-03 39_[+2(5.59e-05)]_33 chrV:12824935-12825015 1.36e-03 25_[+2(5.59e-05)]_38_[+3(3.48e-05)]_\ 1 chrX:2158000-2158080 4.00e-01 80 chrIV:4027685-4027765 1.27e-01 80 chrIV:12906671-12906751 1.51e-04 43_[+1(3.03e-05)]_29 chrII:3440410-3440490 1.12e-02 80 chrX:13803311-13803391 8.47e-01 80 chrV:18957588-18957668 3.13e-01 80 chrII:3788517-3788597 1.59e-04 33_[+1(5.01e-05)]_14_[+1(3.03e-05)]_\ 17 chrX:8242079-8242159 1.20e-01 80 chrIV:4120447-4120527 4.55e-01 80 chrII:5553684-5553764 1.04e-02 1_[+2(5.59e-05)]_71 chrV:17009513-17009593 9.86e-01 80 chrIV:17342324-17342404 6.94e-01 80 chrIII:2266146-2266226 3.82e-02 22_[+2(5.59e-05)]_50 chrII:14055862-14055942 6.97e-02 [+2(5.59e-05)]_5_[+2(8.74e-05)]_59 chrI:10063085-10063165 1.68e-02 1_[+1(5.01e-05)]_71 chrIV:10269608-10269688 7.08e-01 80 chrV:3482760-3482840 6.87e-03 20_[+1(5.01e-05)]_52 chrV:19319751-19319831 1.26e-02 33_[+3(5.42e-05)]_39 chrIV:8163842-8163922 5.93e-01 80 chrIV:11489229-11489309 2.63e-01 80 chrIII:535875-535955 1.37e-04 12_[+1(5.01e-05)]_7_[+1(1.10e-05)]_\ 45 chrIV:6086636-6086716 1.59e-02 53_[+2(5.59e-05)]_19 chrII:3954210-3954290 7.95e-01 80 chrII:5806701-5806781 6.53e-05 2_[+4(3.67e-06)]_70 chrV:13358064-13358144 1.00e-01 80 chrII:4011675-4011755 2.08e-02 2_[+2(5.59e-05)]_70 chrII:14959427-14959507 6.82e-03 80 chrV:4915024-4915104 3.28e-01 80 chrIII:3282024-3282104 5.66e-02 80 chrX:3110754-3110834 2.35e-03 6_[+2(5.59e-05)]_25_[+3(5.42e-05)]_\ 33 chrIV:11623237-11623317 8.97e-01 80 chrI:1017489-1017569 1.46e-02 31_[+3(3.48e-05)]_41 chrX:14194414-14194494 4.10e-02 80 chrV:11649402-11649482 2.40e-02 80 chrX:13163380-13163460 1.78e-02 50_[+3(3.48e-05)]_22 chrV:12745156-12745236 4.21e-02 80 chrV:5511898-5511978 1.12e-02 80 chrIV:14431035-14431115 5.67e-03 34_[+1(3.03e-05)]_38 chrX:9539859-9539939 6.69e-01 80 chrIV:16525158-16525238 2.62e-01 80 chrIV:1560100-1560180 2.48e-01 80 chrV:11236113-11236193 4.49e-02 80 chrV:13138116-13138196 3.53e-03 23_[+2(2.01e-05)]_49 chrV:9202869-9202949 1.44e-02 26_[+2(2.01e-05)]_46 chrX:10529161-10529241 2.06e-01 80 chrII:6632161-6632241 1.22e-01 80 chrII:9468575-9468655 9.42e-01 80 chrII:888184-888264 8.84e-01 80 chrII:10139353-10139433 5.03e-01 80 chrV:7364214-7364294 5.91e-05 22_[+3(3.48e-05)]_5_[+2(2.01e-05)]_\ 37 chrI:7355924-7356004 9.61e-03 80 chrII:6123161-6123241 2.58e-02 35_[+2(2.01e-05)]_37 chrX:11909298-11909378 8.91e-01 80 chrIV:9160007-9160087 1.66e-01 80 chrX:9687417-9687497 2.19e-01 80 chrIV:9311291-9311371 5.10e-01 80 chrV:19846600-19846680 1.54e-01 62_[+3(5.42e-05)]_10 chrX:10630572-10630652 2.50e-01 80 chrV:17090076-17090156 3.54e-03 66_[+1(3.03e-05)]_6 chrII:1475486-1475566 2.49e-03 29_[+2(8.74e-05)]_11_[+1(6.08e-05)]_\ 24 chrI:1022250-1022330 3.81e-06 [+5(2.21e-06)]_34_[+2(5.59e-05)]_30 chrII:7232652-7232732 6.13e-02 80 chrI:6963338-6963418 3.90e-01 80 chrII:5332502-5332582 2.19e-02 11_[+2(2.01e-05)]_61 chrIV:6048610-6048690 6.26e-02 80 chrX:8492902-8492982 1.09e-01 80 chrIII:6818234-6818314 4.82e-01 80 chrII:1386636-1386716 2.47e-02 31_[+4(5.51e-06)]_41 chrII:3295314-3295394 7.92e-03 29_[+1(5.01e-05)]_43 chrIV:11771199-11771279 4.82e-05 5_[+1(5.01e-05)]_24_[+1(3.03e-05)]_\ [+3(3.48e-05)]_27 chrII:5557304-5557384 5.83e-02 80 chrV:12296282-12296362 7.01e-01 80 chrII:4674355-4674435 1.54e-01 80 chrIV:9762927-9763007 5.63e-01 80 chrI:10382038-10382118 1.15e-03 40_[+4(7.39e-06)]_32 chrII:5020782-5020862 5.52e-01 80 chrIV:14561858-14561938 5.60e-01 80 chrV:15425550-15425630 3.08e-01 80 chrIII:2653272-2653352 6.06e-01 80 chrX:5962720-5962800 2.34e-01 80 chrIII:13388783-13388863 6.65e-01 80 chrV:18461462-18461542 4.92e-02 80 chrX:13818955-13819035 1.43e-04 13_[+1(5.01e-05)]_34_[+1(3.03e-05)]_\ 17 chrII:6781345-6781425 2.47e-01 80 chrII:4803094-4803174 3.37e-02 80 chrII:1576919-1576999 6.83e-04 55_[+2(2.01e-05)]_17 chrII:12982985-12983065 2.26e-02 [+2(6.72e-05)]_8_[+2(8.74e-05)]_56 chrV:17662437-17662517 3.63e-02 61_[+2(6.72e-05)]_11 chrV:11849574-11849654 3.96e-01 80 chrII:8226609-8226689 4.91e-01 80 chrII:1850955-1851035 2.69e-04 27_[+1(3.03e-05)]_1_[+2(8.74e-05)]_\ 36 chrX:7318770-7318850 8.42e-01 80 chrV:12822219-12822299 7.07e-05 43_[+1(5.01e-05)]_11_[+3(5.42e-05)]_\ 10 chrIV:3944644-3944724 9.57e-01 80 chrII:6178142-6178222 2.04e-01 80 chrI:13815894-13815974 1.16e-01 80 chrII:3990144-3990224 3.21e-04 41_[+2(2.01e-05)]_31 chrII:4194275-4194355 6.29e-02 80 chrV:8288289-8288369 1.63e-01 80 chrII:12577945-12578025 4.31e-01 80 chrV:6280225-6280305 2.94e-03 52_[+1(3.03e-05)]_20 chrIV:12728304-12728384 3.38e-02 80 chrII:2610284-2610364 5.63e-01 80 chrX:6463167-6463247 5.54e-01 80 chrV:19377201-19377281 6.94e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n05.farnam.hpc.yale.internal ********************************************************************************