******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/elt-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:12881333-12881413 1.0000 80 chrIV:9609252-9609332 1.0000 80 chrIV:3097160-3097240 1.0000 80 chrIV:9611095-9611175 1.0000 80 chrIII:6290628-6290708 1.0000 80 chrV:9500963-9501043 1.0000 80 chrV:3355665-3355745 1.0000 80 chrII:12965308-12965388 1.0000 80 chrI:8786275-8786355 1.0000 80 chrV:10909381-10909461 1.0000 80 chrX:459465-459545 1.0000 80 chrI:3709329-3709409 1.0000 80 chrIV:486951-487031 1.0000 80 chrI:6886635-6886715 1.0000 80 chrX:11504604-11504684 1.0000 80 chrV:10287194-10287274 1.0000 80 chrI:13502956-13503036 1.0000 80 chrII:4294378-4294458 1.0000 80 chrIV:7808727-7808807 1.0000 80 chrV:13110829-13110909 1.0000 80 chrIV:7983183-7983263 1.0000 80 chrX:10191983-10192063 1.0000 80 chrI:11490620-11490700 1.0000 80 chrV:7511854-7511934 1.0000 80 chrV:4965920-4966000 1.0000 80 chrIII:8578536-8578616 1.0000 80 chrX:6085331-6085411 1.0000 80 chrIV:16499942-16500022 1.0000 80 chrIV:6925655-6925735 1.0000 80 chrV:11858417-11858497 1.0000 80 chrIV:8589172-8589252 1.0000 80 chrV:7248930-7249010 1.0000 80 chrII:8359740-8359820 1.0000 80 chrX:8501095-8501175 1.0000 80 chrII:8853396-8853476 1.0000 80 chrII:10903229-10903309 1.0000 80 chrI:3706397-3706477 1.0000 80 chrI:3512959-3513039 1.0000 80 chrV:7010593-7010673 1.0000 80 chrV:12105756-12105836 1.0000 80 chrX:3396903-3396983 1.0000 80 chrI:10352005-10352085 1.0000 80 chrII:11733978-11734058 1.0000 80 chrV:18907709-18907789 1.0000 80 chrIV:9614235-9614315 1.0000 80 chrI:5727422-5727502 1.0000 80 chrX:10227388-10227468 1.0000 80 chrIV:5760348-5760428 1.0000 80 chrIV:9608104-9608184 1.0000 80 chrII:10426870-10426950 1.0000 80 chrII:9679635-9679715 1.0000 80 chrX:14339027-14339107 1.0000 80 chrIV:10246610-10246690 1.0000 80 chrIII:8574062-8574142 1.0000 80 chrIII:4102198-4102278 1.0000 80 chrV:11779458-11779538 1.0000 80 chrII:512129-512209 1.0000 80 chrX:8858360-8858440 1.0000 80 chrIV:3165502-3165582 1.0000 80 chrIV:9289814-9289894 1.0000 80 chrIV:11900543-11900623 1.0000 80 chrIII:13174746-13174826 1.0000 80 chrIV:4261298-4261378 1.0000 80 chrIV:7234782-7234862 1.0000 80 chrII:12635074-12635154 1.0000 80 chrX:3879778-3879858 1.0000 80 chrV:541639-541719 1.0000 80 chrIV:9723339-9723419 1.0000 80 chrIV:5761362-5761442 1.0000 80 chrV:17236484-17236564 1.0000 80 chrIV:5519206-5519286 1.0000 80 chrIV:8255400-8255480 1.0000 80 chrIV:10916268-10916348 1.0000 80 chrV:9502516-9502596 1.0000 80 chrV:14976932-14977012 1.0000 80 chrII:10959322-10959402 1.0000 80 chrIV:8273589-8273669 1.0000 80 chrII:5592992-5593072 1.0000 80 chrX:585970-586050 1.0000 80 chrIV:11599873-11599953 1.0000 80 chrV:16911873-16911953 1.0000 80 chrV:14603943-14604023 1.0000 80 chrX:13771878-13771958 1.0000 80 chrI:9717450-9717530 1.0000 80 chrII:3955094-3955174 1.0000 80 chrIV:12531602-12531682 1.0000 80 chrX:14267308-14267388 1.0000 80 chrIII:1238850-1238930 1.0000 80 chrV:16761426-16761506 1.0000 80 chrX:13142982-13143062 1.0000 80 chrIV:5758834-5758914 1.0000 80 chrII:8953875-8953955 1.0000 80 chrV:597105-597185 1.0000 80 chrIV:7501059-7501139 1.0000 80 chrIII:13272968-13273048 1.0000 80 chrI:985226-985306 1.0000 80 chrV:543281-543361 1.0000 80 chrX:4939403-4939483 1.0000 80 chrII:544214-544294 1.0000 80 chrV:4661322-4661402 1.0000 80 chrX:1587239-1587319 1.0000 80 chrV:14815468-14815548 1.0000 80 chrII:9696290-9696370 1.0000 80 chrX:3934988-3935068 1.0000 80 chrX:6805564-6805644 1.0000 80 chrX:9512592-9512672 1.0000 80 chrIV:5762472-5762552 1.0000 80 chrIII:5841334-5841414 1.0000 80 chrV:597986-598066 1.0000 80 chrI:13400850-13400930 1.0000 80 chrII:13007845-13007925 1.0000 80 chrIII:547881-547961 1.0000 80 chrI:5187533-5187613 1.0000 80 chrV:6735307-6735387 1.0000 80 chrIV:5885351-5885431 1.0000 80 chrV:4188212-4188292 1.0000 80 chrIV:9611765-9611845 1.0000 80 chrI:9810754-9810834 1.0000 80 chrX:9458306-9458386 1.0000 80 chrV:8618873-8618953 1.0000 80 chrV:14601341-14601421 1.0000 80 chrII:3862223-3862303 1.0000 80 chrV:802441-802521 1.0000 80 chrIV:8175863-8175943 1.0000 80 chrX:10765170-10765250 1.0000 80 chrII:11888290-11888370 1.0000 80 chrX:6321562-6321642 1.0000 80 chrIV:14086604-14086684 1.0000 80 chrX:15021517-15021597 1.0000 80 chrI:9854896-9854976 1.0000 80 chrX:9456729-9456809 1.0000 80 chrIII:1818437-1818517 1.0000 80 chrV:5426510-5426590 1.0000 80 chrIII:10306220-10306300 1.0000 80 chrV:14500202-14500282 1.0000 80 chrX:12165109-12165189 1.0000 80 chrV:11356051-11356131 1.0000 80 chrIV:9569719-9569799 1.0000 80 chrI:4493533-4493613 1.0000 80 chrX:5479095-5479175 1.0000 80 chrV:6989886-6989966 1.0000 80 chrI:8989704-8989784 1.0000 80 chrI:9807882-9807962 1.0000 80 chrV:12539605-12539685 1.0000 80 chrIV:7826171-7826251 1.0000 80 chrV:6471369-6471449 1.0000 80 chrIII:8621157-8621237 1.0000 80 chrIV:8247491-8247571 1.0000 80 chrIV:11882675-11882755 1.0000 80 chrI:8561754-8561834 1.0000 80 chrIV:9232603-9232683 1.0000 80 chrIV:1869166-1869246 1.0000 80 chrX:6384692-6384772 1.0000 80 chrX:12875108-12875188 1.0000 80 chrX:8987950-8988030 1.0000 80 chrII:7238997-7239077 1.0000 80 chrIV:1915070-1915150 1.0000 80 chrX:10245358-10245438 1.0000 80 chrX:5061906-5061986 1.0000 80 chrIV:9613234-9613314 1.0000 80 chrI:12453188-12453268 1.0000 80 chrX:4569418-4569498 1.0000 80 chrX:905916-905996 1.0000 80 chrII:8420168-8420248 1.0000 80 chrX:15368167-15368247 1.0000 80 chrIII:6297439-6297519 1.0000 80 chrIII:12016237-12016317 1.0000 80 chrV:11464787-11464867 1.0000 80 chrIII:5965481-5965561 1.0000 80 chrX:12824856-12824936 1.0000 80 chrV:4482006-4482086 1.0000 80 chrV:1618634-1618714 1.0000 80 chrV:15773539-15773619 1.0000 80 chrX:5026612-5026692 1.0000 80 chrX:15311131-15311211 1.0000 80 chrII:4907646-4907726 1.0000 80 chrV:12412095-12412175 1.0000 80 chrV:800433-800513 1.0000 80 chrX:11726605-11726685 1.0000 80 chrV:16263971-16264051 1.0000 80 chrI:7216244-7216324 1.0000 80 chrX:3547242-3547322 1.0000 80 chrII:9921293-9921373 1.0000 80 chrII:8419256-8419336 1.0000 80 chrII:10994003-10994083 1.0000 80 chrX:10302603-10302683 1.0000 80 chrX:17510731-17510811 1.0000 80 chrX:15713331-15713411 1.0000 80 chrIV:5706451-5706531 1.0000 80 chrX:3164099-3164179 1.0000 80 chrII:5103341-5103421 1.0000 80 chrX:15042707-15042787 1.0000 80 chrII:5297852-5297932 1.0000 80 chrX:6710819-6710899 1.0000 80 chrIII:9270356-9270436 1.0000 80 chrX:17535042-17535122 1.0000 80 chrII:8823309-8823389 1.0000 80 chrIII:9991495-9991575 1.0000 80 chrV:8437451-8437531 1.0000 80 chrX:15470138-15470218 1.0000 80 chrIII:3784179-3784259 1.0000 80 chrII:5784758-5784838 1.0000 80 chrV:14577166-14577246 1.0000 80 chrII:1214800-1214880 1.0000 80 chrX:7880987-7881067 1.0000 80 chrI:2842127-2842207 1.0000 80 chrIII:13659182-13659262 1.0000 80 chrI:11348703-11348783 1.0000 80 chrIII:3478960-3479040 1.0000 80 chrIV:13014137-13014217 1.0000 80 chrII:2436909-2436989 1.0000 80 chrX:6671837-6671917 1.0000 80 chrV:6498593-6498673 1.0000 80 chrIV:9617533-9617613 1.0000 80 chrX:6665256-6665336 1.0000 80 chrV:13333556-13333636 1.0000 80 chrIV:14729421-14729501 1.0000 80 chrX:2902952-2903032 1.0000 80 chrV:4920242-4920322 1.0000 80 chrV:801843-801923 1.0000 80 chrIV:2463480-2463560 1.0000 80 chrIII:13381063-13381143 1.0000 80 chrV:9218374-9218454 1.0000 80 chrIV:10253044-10253124 1.0000 80 chrIII:8501785-8501865 1.0000 80 chrX:15485425-15485505 1.0000 80 chrII:5487231-5487311 1.0000 80 chrII:8912682-8912762 1.0000 80 chrI:8935357-8935437 1.0000 80 chrIII:4392106-4392186 1.0000 80 chrV:19350418-19350498 1.0000 80 chrX:15219664-15219744 1.0000 80 chrV:539191-539271 1.0000 80 chrII:4982162-4982242 1.0000 80 chrII:4583647-4583727 1.0000 80 chrII:13955147-13955227 1.0000 80 chrV:10045919-10045999 1.0000 80 chrIII:7301857-7301937 1.0000 80 chrX:14488021-14488101 1.0000 80 chrII:6419329-6419409 1.0000 80 chrI:11104198-11104278 1.0000 80 chrX:7328328-7328408 1.0000 80 chrX:17097004-17097084 1.0000 80 chrII:4759984-4760064 1.0000 80 chrIV:3868671-3868751 1.0000 80 chrII:9356133-9356213 1.0000 80 chrIV:8254289-8254369 1.0000 80 chrII:6115715-6115795 1.0000 80 chrIV:6496275-6496355 1.0000 80 chrIV:5506764-5506844 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_elt-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/elt-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.315 C 0.181 G 0.19 T 0.314 Background letter frequencies (from file dataset with add-one prior applied): A 0.315 C 0.181 G 0.19 T 0.314 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TBTNATCT MEME-1 width = 8 sites = 103 llr = 687 E-value = 2.3e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif TBTNATCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::22a::: pos.-specific C :322::a: probability G 24:3:::: matrix T 8363:a:a bits 2.5 * 2.2 * 2.0 * 1.7 **** Relative 1.5 **** Entropy 1.2 **** (9.6 bits) 1.0 * **** 0.7 ** **** 0.5 *** **** 0.2 *** **** 0.0 -------- Multilevel TGTTATCT consensus GCAG sequence TCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBTNATCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:4920242-4920322 19 3.91e-05 TGTGATAAGA TCTGATCT ATGAATAGAT chrX:3547242-3547322 67 3.91e-05 TTTAGTTTTA TCTGATCT TTCAAG chrV:12539605-12539685 34 3.91e-05 GCTTCTCTAA TCTGATCT GGTCTCAATC chrIV:9614235-9614315 22 3.91e-05 GATCCCAATC TGTGATCT GATAATGTCC chrII:8853396-8853476 18 3.91e-05 AAACTATCAT TCTGATCT TGTAAAGGAT chrII:4759984-4760064 4 1.41e-04 CAT TGTTATCT GAAATGAAAA chrX:7328328-7328408 38 1.41e-04 GAGAGGCATC TGTTATCT TTTGACAGAA chrV:6498593-6498673 10 1.41e-04 CTTAAGTAA TCTCATCT TTCAATATAT chrII:10994003-10994083 4 1.41e-04 TTT TGTTATCT TCGTTCAAGA chrII:9921293-9921373 57 1.41e-04 GCTTTTAGAT TGTTATCT CATATGTTAT chrV:12412095-12412175 10 1.41e-04 TTCTCGTTA TCTTATCT CTCGATCTTT chrX:12875108-12875188 21 1.41e-04 TTTTTAATGA TCTCATCT TGATCTATCC chrX:6384692-6384772 19 1.41e-04 AAGATAAATA TCTTATCT TTTATCTCGT chrIV:8247491-8247571 44 1.41e-04 TCATCTTCTA TGTCATCT TCACAGTCAC chrIII:547881-547961 7 1.41e-04 GTTGCC TGTCATCT CTGCAACGAT chrX:9512592-9512672 43 1.41e-04 GTAGAACAGA TCTTATCT ACGCTCATAG chrV:4661322-4661402 26 1.41e-04 CAAGATAGTA TGTTATCT GCATTGGCCA chrII:544214-544294 27 1.41e-04 AATATCTGAT TGTTATCT CAACTTTTTT chrV:14603943-14604023 66 1.41e-04 TCTTTCCCAT TCTCATCT ATTTGAT chrII:5592992-5593072 35 1.41e-04 TAAACGAGTG TGTTATCT AATCTATCAT chrIV:5519206-5519286 32 1.41e-04 ACATTTCTCC TCTTATCT TTTCGGAAAA chrX:14339027-14339107 9 1.41e-04 TTATAGAT TGTTATCT CATTTGTAAA chrII:9679635-9679715 32 1.41e-04 ATTATCCGAT TCTCATCT GAGAGGTttt chrV:11858417-11858497 15 1.41e-04 TATCAGATAA TCTTATCT GAAAATCAGA chrX:10191983-10192063 60 1.41e-04 TAAATTCCCG TCTTATCT AAGAAATCTA chrV:10287194-10287274 66 1.41e-04 CTAATCTCTA TGTTATCT CAATGGC chrIII:6290628-6290708 5 1.41e-04 CCAT TGTTATCT TTTCACACAC chrII:8912682-8912762 13 1.63e-04 TGTCGCATTA TGCGATCT CTTATCGGTG chrI:12453188-12453268 69 1.63e-04 GCCTGCACTT TGCGATCT TCAG chrIV:7234782-7234862 22 1.63e-04 GCAAACAGTC TGCGATCT TTGGAAAGAT chrIV:8589172-8589252 40 1.63e-04 CTTATCTATT TCCGATCT CCACTTTTCC chrII:5487231-5487311 41 3.20e-04 CAATCTAGAA TCCCATCT AAAACCTAAA chrIV:5706451-5706531 24 3.20e-04 GACAGTTTTC TGTAATCT TGACGTCATC chrX:12824856-12824936 13 3.20e-04 TTTTTGAGAC TCCTATCT TGATCAAAAT chrIII:6297439-6297519 52 3.20e-04 CCAACGTACT TGTAATCT GGTTCGTCCA chrIII:8621157-8621237 41 3.20e-04 ATACAAAAGA TCTAATCT TGAAGCGGCC chrV:802441-802521 44 3.20e-04 TGAGAAAGAT TGCCATCT ACAAATTTGG chrIV:5885351-5885431 42 3.20e-04 AATCTCAAAT TTTGATCT GCAATATCGG chrII:9696290-9696370 37 3.20e-04 CACTCGGGTT TTTGATCT ACTAAGTCGG chrX:13771878-13771958 48 3.20e-04 AAGTAAAGAT TTTGATCT ACTTTCAAGG chrII:10959322-10959402 33 3.20e-04 CTCCCTCTAC TCCCATCT TTTTCTCACT chrV:9502516-9502596 52 3.20e-04 TACCATCTTT TGCCATCT AGCTTCCATT chrV:18907709-18907789 47 3.20e-04 AGGATCTCGG TGCCATCT CGCGTACCGG chrX:8501095-8501175 54 3.20e-04 AACTTCATTA TCTAATCT AGAAAATTGC chrX:11504604-11504684 15 3.20e-04 TTCAAACTGA TGCTATCT CCGATTACAG chrX:459465-459545 62 3.20e-04 ACATCTTGAT TCTAATCT TGAGGTTATT chrX:14488021-14488101 71 4.30e-04 CATGAGACCA TTTTATCT TA chrX:6671837-6671917 67 4.30e-04 CCTGTCGGCG TTTTATCT AACTTT chrII:5784758-5784838 60 4.30e-04 AATTCGCGAT TTTTATCT GCTAACCTTC chrX:5061906-5061986 68 4.30e-04 ACTATCTCAG TTTTATCT ACAGG chrIV:1869166-1869246 22 4.30e-04 TATTCGTTTT TTTTATCT TCTTCTTCAT chrI:8989704-8989784 70 4.30e-04 TAAAAAGAAA TTTCATCT TTT chrV:12105756-12105836 25 4.30e-04 TTGGAACAGA TTTTATCT GAACAATGAC chrV:6989886-6989966 67 4.69e-04 TTATCTTCCC TCAGATCT TATTTA chrX:5479095-5479175 5 4.69e-04 TCTA TCAGATCT CTCACACACA chrX:3934988-3935068 37 4.69e-04 ATCTCTTCAT TGAGATCT TATCAGAACA chrX:14267308-14267388 33 4.69e-04 TTTTTGAAGC TCAGATCT ATCTGACGGC chrIV:5760348-5760428 25 4.69e-04 AGAGACGCCG TCAGATCT GGAACAGATT chrII:12965308-12965388 45 4.69e-04 TTATCTGCGA TCAGATCT CAACAGATAA chrII:4982162-4982242 27 5.87e-04 GAAACGAAGC GCTTATCT GATTTGATCG chrIII:3784179-3784259 55 5.87e-04 TATCTTAGAG TTCGATCT ATGAGAGGGG chrX:11726605-11726685 65 5.87e-04 TTATTCTGAT GGTTATCT GTGAATCT chrX:10245358-10245438 47 5.87e-04 CTATCTAGAT GGTTATCT CCAAAAACAC chrV:4188212-4188292 15 5.87e-04 ACATCAGATC TTCGATCT ACGATTCGTC chrIV:9611095-9611175 60 5.87e-04 AATGGAAGAT GGTTATCT TGAAGACATG chrX:4569418-4569498 44 6.89e-04 GGTCATTTTT TCACATCT TGGTTGTTGG chrII:3862223-3862303 59 6.89e-04 GACCACTGAT TGACATCT GCGCTTTGTG chrIII:13272968-13273048 2 6.89e-04 A TGATATCT CTACAATTCA chrIV:10246610-10246690 33 6.89e-04 CAATTTAATA TGACATCT CAGTGACTTC chrII:2436909-2436989 8 8.07e-04 CCTTCCG TTCCATCT TCATCGTTTT chrI:11348703-11348783 60 8.07e-04 ACGTTATCTT TTTAATCT CCGACGATGG chrX:17535042-17535122 20 8.07e-04 TGAGGAAGCA TTTAATCT TTTTGCCGGT chrV:16263971-16264051 21 8.07e-04 TAATCATATG GCCGATCT AGATTTCGAC chrIII:5965481-5965561 30 8.07e-04 TTGACAGAAT TTTAATCT TTTCAATAGA chrIII:1818437-1818517 61 8.07e-04 GTGTTGAGAT TTTAATCT TTTAGGTGCA chrI:13400850-13400930 69 8.07e-04 TATCACTATA TTCCATCT GAAA chrX:13142982-13143062 39 8.07e-04 GCGAAAAAAC TTTAATCT CAGTGATCAA chrIV:12531602-12531682 15 8.07e-04 TTCCTCTCGG TTCCATCT ATAGATACCT chrII:12635074-12635154 45 8.07e-04 TTATCTTTAA GCCGATCT GTTGAGGGAA chrV:3355665-3355745 12 8.07e-04 AAAAACGATG TTTAATCT GCTTTTCACA chrIII:12016237-12016317 5 9.02e-04 CAAT GTTGATCT AACATCTTTA chrV:9500963-9501043 3 9.02e-04 CT GCTAATCT ACTCTCGAAT chrV:13333556-13333636 15 1.00e-03 TGCATTAGAT TCAAATCT TGTCTGTTAT chrIV:13014137-13014217 19 1.00e-03 AATCGACTTT TTAGATCT AAATTCATTG chrIV:6925655-6925735 73 1.00e-03 TGTGGAAACA TGAAATCT chrIV:7808727-7808807 48 1.00e-03 CCTGATGAGA TCAAATCT ATTCATCTCA chrIII:3478960-3479040 5 1.08e-03 AATT GTTTATCT CCGAGAATTT chrX:6710819-6710899 71 1.08e-03 GAAAAATTAT GTTTATCT CG chrI:9807882-9807962 48 1.08e-03 GAAAAAAGTG TTCAATCT AGATTTTCTT chrIII:5841334-5841414 21 1.08e-03 TCCATCTCTT GTTTATCT GTGGAGATCG chrIV:3165502-3165582 5 1.08e-03 TCTC TTCAATCT TTCAGATTCT chrV:17236484-17236564 42 1.19e-03 TTTTCAATAC GGAGATCT TTTCTTCAAA chrV:11779458-11779538 37 1.19e-03 CTGACCCTTT TTACATCT TTGACATAAA chrX:10227388-10227468 39 1.19e-03 GAAATGTGAA GGAGATCT GGAAAAGGCG chrI:11104198-11104278 34 1.23e-03 CTTCTAGATT GCCAATCT AACACCTCTA chrX:15042707-15042787 31 1.23e-03 TTACCTATCT GGCAATCT GAGATAACAA chrV:15773539-15773619 10 1.29e-03 TGAAAAGAT GGATATCT AGTATGTTTT chrV:1618634-1618714 32 1.29e-03 TATCGACCAC GGACATCT TACCGATGAG chrI:6886635-6886715 11 1.29e-03 ATTGAGAAAA GGATATCT CACTCAAACC chrII:10903229-10903309 3 1.41e-03 TA TTAAATCT TAAGATTCGA chrIV:9613234-9613314 12 1.47e-03 GGCATCAGAT GGAAATCT CAAGAAGATT chrIV:11599873-11599953 45 1.47e-03 AGATAAGAAA GGAAATCT TCATAAAGAT chrI:9810754-9810834 73 1.49e-03 GATTGTAAGC GTCAATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBTNATCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:4920242-4920322 3.9e-05 18_[+1]_54 chrX:3547242-3547322 3.9e-05 66_[+1]_6 chrV:12539605-12539685 3.9e-05 33_[+1]_39 chrIV:9614235-9614315 3.9e-05 21_[+1]_51 chrII:8853396-8853476 3.9e-05 17_[+1]_55 chrII:4759984-4760064 0.00014 3_[+1]_69 chrX:7328328-7328408 0.00014 37_[+1]_35 chrV:6498593-6498673 0.00014 9_[+1]_63 chrII:10994003-10994083 0.00014 3_[+1]_69 chrII:9921293-9921373 0.00014 56_[+1]_16 chrV:12412095-12412175 0.00014 9_[+1]_63 chrX:12875108-12875188 0.00014 20_[+1]_52 chrX:6384692-6384772 0.00014 18_[+1]_54 chrIV:8247491-8247571 0.00014 43_[+1]_29 chrIII:547881-547961 0.00014 6_[+1]_66 chrX:9512592-9512672 0.00014 42_[+1]_30 chrV:4661322-4661402 0.00014 25_[+1]_47 chrII:544214-544294 0.00014 26_[+1]_46 chrV:14603943-14604023 0.00014 65_[+1]_7 chrII:5592992-5593072 0.00014 34_[+1]_38 chrIV:5519206-5519286 0.00014 31_[+1]_41 chrX:14339027-14339107 0.00014 8_[+1]_64 chrII:9679635-9679715 0.00014 31_[+1]_41 chrV:11858417-11858497 0.00014 14_[+1]_58 chrX:10191983-10192063 0.00014 59_[+1]_13 chrV:10287194-10287274 0.00014 65_[+1]_7 chrIII:6290628-6290708 0.00014 4_[+1]_68 chrII:8912682-8912762 0.00016 12_[+1]_60 chrI:12453188-12453268 0.00016 68_[+1]_4 chrIV:7234782-7234862 0.00016 21_[+1]_51 chrIV:8589172-8589252 0.00016 39_[+1]_33 chrII:5487231-5487311 0.00032 40_[+1]_32 chrIV:5706451-5706531 0.00032 23_[+1]_49 chrX:12824856-12824936 0.00032 12_[+1]_60 chrIII:6297439-6297519 0.00032 51_[+1]_21 chrIII:8621157-8621237 0.00032 40_[+1]_32 chrV:802441-802521 0.00032 43_[+1]_29 chrIV:5885351-5885431 0.00032 41_[+1]_31 chrII:9696290-9696370 0.00032 36_[+1]_36 chrX:13771878-13771958 0.00032 47_[+1]_25 chrII:10959322-10959402 0.00032 32_[+1]_40 chrV:9502516-9502596 0.00032 51_[+1]_21 chrV:18907709-18907789 0.00032 46_[+1]_26 chrX:8501095-8501175 0.00032 53_[+1]_19 chrX:11504604-11504684 0.00032 14_[+1]_58 chrX:459465-459545 0.00032 61_[+1]_11 chrX:14488021-14488101 0.00043 70_[+1]_2 chrX:6671837-6671917 0.00043 66_[+1]_6 chrII:5784758-5784838 0.00043 59_[+1]_13 chrX:5061906-5061986 0.00043 67_[+1]_5 chrIV:1869166-1869246 0.00043 21_[+1]_51 chrI:8989704-8989784 0.00043 69_[+1]_3 chrV:12105756-12105836 0.00043 24_[+1]_48 chrV:6989886-6989966 0.00047 66_[+1]_6 chrX:5479095-5479175 0.00047 4_[+1]_68 chrX:3934988-3935068 0.00047 36_[+1]_36 chrX:14267308-14267388 0.00047 32_[+1]_40 chrIV:5760348-5760428 0.00047 24_[+1]_48 chrII:12965308-12965388 0.00047 44_[+1]_28 chrII:4982162-4982242 0.00059 26_[+1]_46 chrIII:3784179-3784259 0.00059 54_[+1]_18 chrX:11726605-11726685 0.00059 64_[+1]_8 chrX:10245358-10245438 0.00059 46_[+1]_26 chrV:4188212-4188292 0.00059 14_[+1]_58 chrIV:9611095-9611175 0.00059 59_[+1]_13 chrX:4569418-4569498 0.00069 43_[+1]_29 chrII:3862223-3862303 0.00069 58_[+1]_14 chrIII:13272968-13273048 0.00069 1_[+1]_71 chrIV:10246610-10246690 0.00069 32_[+1]_40 chrII:2436909-2436989 0.00081 7_[+1]_65 chrI:11348703-11348783 0.00081 59_[+1]_13 chrX:17535042-17535122 0.00081 19_[+1]_53 chrV:16263971-16264051 0.00081 20_[+1]_52 chrIII:5965481-5965561 0.00081 29_[+1]_43 chrIII:1818437-1818517 0.00081 60_[+1]_12 chrI:13400850-13400930 0.00081 68_[+1]_4 chrX:13142982-13143062 0.00081 38_[+1]_34 chrIV:12531602-12531682 0.00081 14_[+1]_58 chrII:12635074-12635154 0.00081 44_[+1]_28 chrV:3355665-3355745 0.00081 11_[+1]_61 chrIII:12016237-12016317 0.0009 4_[+1]_68 chrV:9500963-9501043 0.0009 2_[+1]_70 chrV:13333556-13333636 0.001 14_[+1]_58 chrIV:13014137-13014217 0.001 18_[+1]_54 chrIV:6925655-6925735 0.001 72_[+1] chrIV:7808727-7808807 0.001 47_[+1]_25 chrIII:3478960-3479040 0.0011 4_[+1]_68 chrX:6710819-6710899 0.0011 70_[+1]_2 chrI:9807882-9807962 0.0011 47_[+1]_25 chrIII:5841334-5841414 0.0011 20_[+1]_52 chrIV:3165502-3165582 0.0011 4_[+1]_68 chrV:17236484-17236564 0.0012 41_[+1]_31 chrV:11779458-11779538 0.0012 36_[+1]_36 chrX:10227388-10227468 0.0012 38_[+1]_34 chrI:11104198-11104278 0.0012 33_[+1]_39 chrX:15042707-15042787 0.0012 30_[+1]_42 chrV:15773539-15773619 0.0013 9_[+1]_63 chrV:1618634-1618714 0.0013 31_[+1]_41 chrI:6886635-6886715 0.0013 10_[+1]_62 chrII:10903229-10903309 0.0014 2_[+1]_70 chrIV:9613234-9613314 0.0015 11_[+1]_61 chrIV:11599873-11599953 0.0015 44_[+1]_28 chrI:9810754-9810834 0.0015 72_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBTNATCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TBTNATCT width=8 seqs=103 chrV:4920242-4920322 ( 19) TCTGATCT 1 chrX:3547242-3547322 ( 67) TCTGATCT 1 chrV:12539605-12539685 ( 34) TCTGATCT 1 chrIV:9614235-9614315 ( 22) TGTGATCT 1 chrII:8853396-8853476 ( 18) TCTGATCT 1 chrII:4759984-4760064 ( 4) TGTTATCT 1 chrX:7328328-7328408 ( 38) TGTTATCT 1 chrV:6498593-6498673 ( 10) TCTCATCT 1 chrII:10994003-10994083 ( 4) TGTTATCT 1 chrII:9921293-9921373 ( 57) TGTTATCT 1 chrV:12412095-12412175 ( 10) TCTTATCT 1 chrX:12875108-12875188 ( 21) TCTCATCT 1 chrX:6384692-6384772 ( 19) TCTTATCT 1 chrIV:8247491-8247571 ( 44) TGTCATCT 1 chrIII:547881-547961 ( 7) TGTCATCT 1 chrX:9512592-9512672 ( 43) TCTTATCT 1 chrV:4661322-4661402 ( 26) TGTTATCT 1 chrII:544214-544294 ( 27) TGTTATCT 1 chrV:14603943-14604023 ( 66) TCTCATCT 1 chrII:5592992-5593072 ( 35) TGTTATCT 1 chrIV:5519206-5519286 ( 32) TCTTATCT 1 chrX:14339027-14339107 ( 9) TGTTATCT 1 chrII:9679635-9679715 ( 32) TCTCATCT 1 chrV:11858417-11858497 ( 15) TCTTATCT 1 chrX:10191983-10192063 ( 60) TCTTATCT 1 chrV:10287194-10287274 ( 66) TGTTATCT 1 chrIII:6290628-6290708 ( 5) TGTTATCT 1 chrII:8912682-8912762 ( 13) TGCGATCT 1 chrI:12453188-12453268 ( 69) TGCGATCT 1 chrIV:7234782-7234862 ( 22) TGCGATCT 1 chrIV:8589172-8589252 ( 40) TCCGATCT 1 chrII:5487231-5487311 ( 41) TCCCATCT 1 chrIV:5706451-5706531 ( 24) TGTAATCT 1 chrX:12824856-12824936 ( 13) TCCTATCT 1 chrIII:6297439-6297519 ( 52) TGTAATCT 1 chrIII:8621157-8621237 ( 41) TCTAATCT 1 chrV:802441-802521 ( 44) TGCCATCT 1 chrIV:5885351-5885431 ( 42) TTTGATCT 1 chrII:9696290-9696370 ( 37) TTTGATCT 1 chrX:13771878-13771958 ( 48) TTTGATCT 1 chrII:10959322-10959402 ( 33) TCCCATCT 1 chrV:9502516-9502596 ( 52) TGCCATCT 1 chrV:18907709-18907789 ( 47) TGCCATCT 1 chrX:8501095-8501175 ( 54) TCTAATCT 1 chrX:11504604-11504684 ( 15) TGCTATCT 1 chrX:459465-459545 ( 62) TCTAATCT 1 chrX:14488021-14488101 ( 71) TTTTATCT 1 chrX:6671837-6671917 ( 67) TTTTATCT 1 chrII:5784758-5784838 ( 60) TTTTATCT 1 chrX:5061906-5061986 ( 68) TTTTATCT 1 chrIV:1869166-1869246 ( 22) TTTTATCT 1 chrI:8989704-8989784 ( 70) TTTCATCT 1 chrV:12105756-12105836 ( 25) TTTTATCT 1 chrV:6989886-6989966 ( 67) TCAGATCT 1 chrX:5479095-5479175 ( 5) TCAGATCT 1 chrX:3934988-3935068 ( 37) TGAGATCT 1 chrX:14267308-14267388 ( 33) TCAGATCT 1 chrIV:5760348-5760428 ( 25) TCAGATCT 1 chrII:12965308-12965388 ( 45) TCAGATCT 1 chrII:4982162-4982242 ( 27) GCTTATCT 1 chrIII:3784179-3784259 ( 55) TTCGATCT 1 chrX:11726605-11726685 ( 65) GGTTATCT 1 chrX:10245358-10245438 ( 47) GGTTATCT 1 chrV:4188212-4188292 ( 15) TTCGATCT 1 chrIV:9611095-9611175 ( 60) GGTTATCT 1 chrX:4569418-4569498 ( 44) TCACATCT 1 chrII:3862223-3862303 ( 59) TGACATCT 1 chrIII:13272968-13273048 ( 2) TGATATCT 1 chrIV:10246610-10246690 ( 33) TGACATCT 1 chrII:2436909-2436989 ( 8) TTCCATCT 1 chrI:11348703-11348783 ( 60) TTTAATCT 1 chrX:17535042-17535122 ( 20) TTTAATCT 1 chrV:16263971-16264051 ( 21) GCCGATCT 1 chrIII:5965481-5965561 ( 30) TTTAATCT 1 chrIII:1818437-1818517 ( 61) TTTAATCT 1 chrI:13400850-13400930 ( 69) TTCCATCT 1 chrX:13142982-13143062 ( 39) TTTAATCT 1 chrIV:12531602-12531682 ( 15) TTCCATCT 1 chrII:12635074-12635154 ( 45) GCCGATCT 1 chrV:3355665-3355745 ( 12) TTTAATCT 1 chrIII:12016237-12016317 ( 5) GTTGATCT 1 chrV:9500963-9501043 ( 3) GCTAATCT 1 chrV:13333556-13333636 ( 15) TCAAATCT 1 chrIV:13014137-13014217 ( 19) TTAGATCT 1 chrIV:6925655-6925735 ( 73) TGAAATCT 1 chrIV:7808727-7808807 ( 48) TCAAATCT 1 chrIII:3478960-3479040 ( 5) GTTTATCT 1 chrX:6710819-6710899 ( 71) GTTTATCT 1 chrI:9807882-9807962 ( 48) TTCAATCT 1 chrIII:5841334-5841414 ( 21) GTTTATCT 1 chrIV:3165502-3165582 ( 5) TTCAATCT 1 chrV:17236484-17236564 ( 42) GGAGATCT 1 chrV:11779458-11779538 ( 37) TTACATCT 1 chrX:10227388-10227468 ( 39) GGAGATCT 1 chrI:11104198-11104278 ( 34) GCCAATCT 1 chrX:15042707-15042787 ( 31) GGCAATCT 1 chrV:15773539-15773619 ( 10) GGATATCT 1 chrV:1618634-1618714 ( 32) GGACATCT 1 chrI:6886635-6886715 ( 11) GGATATCT 1 chrII:10903229-10903309 ( 3) TTAAATCT 1 chrIV:9613234-9613314 ( 12) GGAAATCT 1 chrIV:11599873-11599953 ( 45) GGAAATCT 1 chrI:9810754-9810834 ( 73) GTCAATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBTNATCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.39859 E= 2.3e-013 -1333 -1333 10 134 -1333 87 95 -6 -49 31 -1333 82 -49 10 41 7 167 -1333 -1333 -1333 -1333 -1333 -1333 167 -1333 247 -1333 -1333 -1333 -1333 -1333 167 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBTNATCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 103 E= 2.3e-013 0.000000 0.000000 0.203883 0.796117 0.000000 0.330097 0.368932 0.300971 0.223301 0.223301 0.000000 0.553398 0.223301 0.194175 0.252427 0.330097 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBTNATCT MEME-1 regular expression -------------------------------------------------------------------------------- [TG][GCT][TAC][TGA]ATCT -------------------------------------------------------------------------------- Time 10.01 secs. ******************************************************************************** ******************************************************************************** MOTIF WGATAAGA MEME-2 width = 8 sites = 50 llr = 395 E-value = 7.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGATAAGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 6:a:9a29 pos.-specific C ::::::2: probability G :a::1:61 matrix T 3::a:::: bits 2.5 * 2.2 * 2.0 * 1.7 *** * Relative 1.5 *** * Entropy 1.2 ***** * (11.4 bits) 1.0 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGATAAGA consensus T A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGATAAGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:6496275-6496355 71 3.52e-05 GTAAATATGT AGATAAGA TC chrX:7880987-7881067 71 3.52e-05 AGAATCACCG AGATAAGA TA chrIII:9991495-9991575 65 3.52e-05 GAAAAAACTG AGATAAGA TTTTTATC chrV:14500202-14500282 66 3.52e-05 CTCACAAAAG AGATAAGA TCTTGTT chrII:11888290-11888370 56 3.52e-05 GATCCTCAGT AGATAAGA AACTTTTGAC chrX:6805564-6805644 11 3.52e-05 TGAAAAGATC AGATAAGA TTAGTATCAC chrIV:11599873-11599953 35 3.52e-05 CACCGCGCAG AGATAAGA AAGGAAATCT chrIV:8255400-8255480 30 3.52e-05 AGTATTGCAG AGATAAGA TGCTGATAGC chrX:8858360-8858440 28 3.52e-05 AAAGATGCAA AGATAAGA TATGACGAAA chrIII:4102198-4102278 14 3.52e-05 ATCGCATAGA AGATAAGA ATCCGACGGA chrV:7010593-7010673 65 3.52e-05 aggaggaaga agataaga agaaggag chrV:4920242-4920322 11 7.02e-05 TCGTTTATTG TGATAAGA TCTGATCTAT chrX:6665256-6665336 41 7.02e-05 GGTCAAAATA TGATAAGA ACGAAGGTTG chrII:512129-512209 53 7.02e-05 ATTGAAAAAG TGATAAGA AGAAAGGGAA chrIV:9614235-9614315 6 7.02e-05 TATTG TGATAAGA TCCCAATCTG chrV:7248930-7249010 45 7.02e-05 AAAGTTATCA TGATAAGA ATCTTTTGCG chrV:4965920-4966000 37 7.02e-05 ATATGAAGAG TGATAAGA TGTTGGAGAC chrI:13502956-13503036 6 7.02e-05 ATTCA TGATAAGA TTTCTTGAGA chrI:8935357-8935437 43 1.04e-04 CAGCTCAATC AGATAACA CATTTTTAGA chrIV:10253044-10253124 30 1.04e-04 CTCTTATGAG AGATAACA ATCTAAGGTC chrX:6710819-6710899 2 1.04e-04 C AGATAACA CTTTTTTTAG chrX:15042707-15042787 40 1.04e-04 TGGCAATCTG AGATAACA ATCTGGCAGT chrX:15311131-15311211 42 1.04e-04 GGCCTTCCTA AGATAACA ATCAGTGTAC chrIII:5965481-5965561 73 1.04e-04 TCTTTTTTGA AGATAACA chrV:8618873-8618953 45 1.04e-04 TGTCTATAAA AGATAACA ATCTTGTATG chrIII:1238850-1238930 29 1.04e-04 AAATGCCTCT AGATAACA TCAAATAGGA chrIV:13014137-13014217 43 1.95e-04 ATTGATTTTT AGATAAAA ACACTTTTTT chrX:15368167-15368247 39 1.95e-04 GCATTCTTGA TGATAACA TCTAGTTGTT chrX:905916-905996 10 1.95e-04 ATTTCTTTC AGATAAAA TTCCCATGAG chrX:1587239-1587319 20 1.95e-04 AGATCTTAGT AGATAAAA CGGCTGGATT chrV:543281-543361 26 1.95e-04 GTCCGTTTTC AGATAAAA TCTAGCACTC chrX:585970-586050 20 1.95e-04 GGTGAAGAGA AGATAAAA ATCGTAGATG chrIV:8273589-8273669 59 1.95e-04 GTAGCCTACA TGATAACA TCTCTAATTA chrIV:9289814-9289894 25 1.95e-04 TTAAAGAAAC AGATAAAA AGTGTGTTCG chrIV:486951-487031 37 1.95e-04 TATTTTGGAG AGATAAAA CTTGAAAAAA chrII:13955147-13955227 27 2.38e-04 AATATTTGAT AGATGAGA AATAGAATGT chrX:17535042-17535122 67 2.38e-04 TAGATGAATG AGATGAGA TTATAT chrI:5727422-5727502 40 2.38e-04 TCAAAAATCA AGATAAGG AATTTTCCAC chrII:11733978-11734058 26 2.38e-04 TAGGAGGAGG AGATGAGA ATAGACATAC chrI:11490620-11490700 40 2.38e-04 CCGATGGTGG AGATAAGG TTGGAGAGGT chrX:9456729-9456809 40 2.58e-04 ACAACTTGGG CGATAAGA CGGTTGAGAT chrV:13110829-13110909 56 2.58e-04 AGATGAATGA CGATAAGA AAGTTTTGAG chrV:801843-801923 53 3.16e-04 GCTGCCAAAT TGATAAAA TCTGTCCTTC chrX:3164099-3164179 46 3.16e-04 TGAAAATTAT TGATAAAA AATAGGGAGC chrX:6321562-6321642 12 3.16e-04 TCTCTCTAAT TGATAAAA TCGCTTACCT chrV:19350418-19350498 49 3.58e-04 GAAGTGTCTC TGATGAGA ATTACGCTAA chrX:17510731-17510811 58 3.58e-04 CCGATCAAGT TGATAAGG TGTTGCGAGG chrV:18907709-18907789 32 3.58e-04 GGACGGGTCC TGATAAGG ATCTCGGTGC chrIV:7808727-7808807 40 3.58e-04 TGTTCTTACC TGATGAGA TCAAATCTAT chrI:3709329-3709409 43 3.58e-04 CAGATTTTGA TGATAAGG Tgaagaagaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGATAAGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:6496275-6496355 3.5e-05 70_[+2]_2 chrX:7880987-7881067 3.5e-05 70_[+2]_2 chrIII:9991495-9991575 3.5e-05 64_[+2]_8 chrV:14500202-14500282 3.5e-05 65_[+2]_7 chrII:11888290-11888370 3.5e-05 55_[+2]_17 chrX:6805564-6805644 3.5e-05 10_[+2]_62 chrIV:11599873-11599953 3.5e-05 34_[+2]_38 chrIV:8255400-8255480 3.5e-05 29_[+2]_43 chrX:8858360-8858440 3.5e-05 27_[+2]_45 chrIII:4102198-4102278 3.5e-05 13_[+2]_59 chrV:7010593-7010673 3.5e-05 64_[+2]_8 chrV:4920242-4920322 7e-05 10_[+2]_62 chrX:6665256-6665336 7e-05 40_[+2]_32 chrII:512129-512209 7e-05 52_[+2]_20 chrIV:9614235-9614315 7e-05 5_[+2]_67 chrV:7248930-7249010 7e-05 44_[+2]_28 chrV:4965920-4966000 7e-05 36_[+2]_36 chrI:13502956-13503036 7e-05 5_[+2]_67 chrI:8935357-8935437 0.0001 42_[+2]_30 chrIV:10253044-10253124 0.0001 29_[+2]_43 chrX:6710819-6710899 0.0001 1_[+2]_71 chrX:15042707-15042787 0.0001 39_[+2]_33 chrX:15311131-15311211 0.0001 41_[+2]_31 chrIII:5965481-5965561 0.0001 72_[+2] chrV:8618873-8618953 0.0001 44_[+2]_28 chrIII:1238850-1238930 0.0001 28_[+2]_44 chrIV:13014137-13014217 0.0002 42_[+2]_30 chrX:15368167-15368247 0.0002 38_[+2]_34 chrX:905916-905996 0.0002 9_[+2]_63 chrX:1587239-1587319 0.0002 19_[+2]_53 chrV:543281-543361 0.0002 25_[+2]_47 chrX:585970-586050 0.0002 19_[+2]_53 chrIV:8273589-8273669 0.0002 58_[+2]_14 chrIV:9289814-9289894 0.0002 24_[+2]_48 chrIV:486951-487031 0.0002 36_[+2]_36 chrII:13955147-13955227 0.00024 26_[+2]_46 chrX:17535042-17535122 0.00024 66_[+2]_6 chrI:5727422-5727502 0.00024 39_[+2]_33 chrII:11733978-11734058 0.00024 25_[+2]_47 chrI:11490620-11490700 0.00024 39_[+2]_33 chrX:9456729-9456809 0.00026 39_[+2]_33 chrV:13110829-13110909 0.00026 55_[+2]_17 chrV:801843-801923 0.00032 52_[+2]_20 chrX:3164099-3164179 0.00032 45_[+2]_27 chrX:6321562-6321642 0.00032 11_[+2]_61 chrV:19350418-19350498 0.00036 48_[+2]_24 chrX:17510731-17510811 0.00036 57_[+2]_15 chrV:18907709-18907789 0.00036 31_[+2]_41 chrIV:7808727-7808807 0.00036 39_[+2]_33 chrI:3709329-3709409 0.00036 42_[+2]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGATAAGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGATAAGA width=8 seqs=50 chrIV:6496275-6496355 ( 71) AGATAAGA 1 chrX:7880987-7881067 ( 71) AGATAAGA 1 chrIII:9991495-9991575 ( 65) AGATAAGA 1 chrV:14500202-14500282 ( 66) AGATAAGA 1 chrII:11888290-11888370 ( 56) AGATAAGA 1 chrX:6805564-6805644 ( 11) AGATAAGA 1 chrIV:11599873-11599953 ( 35) AGATAAGA 1 chrIV:8255400-8255480 ( 30) AGATAAGA 1 chrX:8858360-8858440 ( 28) AGATAAGA 1 chrIII:4102198-4102278 ( 14) AGATAAGA 1 chrV:7010593-7010673 ( 65) AGATAAGA 1 chrV:4920242-4920322 ( 11) TGATAAGA 1 chrX:6665256-6665336 ( 41) TGATAAGA 1 chrII:512129-512209 ( 53) TGATAAGA 1 chrIV:9614235-9614315 ( 6) TGATAAGA 1 chrV:7248930-7249010 ( 45) TGATAAGA 1 chrV:4965920-4966000 ( 37) TGATAAGA 1 chrI:13502956-13503036 ( 6) TGATAAGA 1 chrI:8935357-8935437 ( 43) AGATAACA 1 chrIV:10253044-10253124 ( 30) AGATAACA 1 chrX:6710819-6710899 ( 2) AGATAACA 1 chrX:15042707-15042787 ( 40) AGATAACA 1 chrX:15311131-15311211 ( 42) AGATAACA 1 chrIII:5965481-5965561 ( 73) AGATAACA 1 chrV:8618873-8618953 ( 45) AGATAACA 1 chrIII:1238850-1238930 ( 29) AGATAACA 1 chrIV:13014137-13014217 ( 43) AGATAAAA 1 chrX:15368167-15368247 ( 39) TGATAACA 1 chrX:905916-905996 ( 10) AGATAAAA 1 chrX:1587239-1587319 ( 20) AGATAAAA 1 chrV:543281-543361 ( 26) AGATAAAA 1 chrX:585970-586050 ( 20) AGATAAAA 1 chrIV:8273589-8273669 ( 59) TGATAACA 1 chrIV:9289814-9289894 ( 25) AGATAAAA 1 chrIV:486951-487031 ( 37) AGATAAAA 1 chrII:13955147-13955227 ( 27) AGATGAGA 1 chrX:17535042-17535122 ( 67) AGATGAGA 1 chrI:5727422-5727502 ( 40) AGATAAGG 1 chrII:11733978-11734058 ( 26) AGATGAGA 1 chrI:11490620-11490700 ( 40) AGATAAGG 1 chrX:9456729-9456809 ( 40) CGATAAGA 1 chrV:13110829-13110909 ( 56) CGATAAGA 1 chrV:801843-801923 ( 53) TGATAAAA 1 chrX:3164099-3164179 ( 46) TGATAAAA 1 chrX:6321562-6321642 ( 12) TGATAAAA 1 chrV:19350418-19350498 ( 49) TGATGAGA 1 chrX:17510731-17510811 ( 58) TGATAAGG 1 chrV:18907709-18907789 ( 32) TGATAAGG 1 chrIV:7808727-7808807 ( 40) TGATGAGA 1 chrI:3709329-3709409 ( 43) TGATAAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGATAAGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.64284 E= 7.5e-007 98 -217 -1229 11 -1229 -1229 239 -1229 167 -1229 -1229 -1229 -1229 -1229 -1229 167 152 -1229 -93 -1229 167 -1229 -1229 -1229 -65 15 166 -1229 152 -1229 -93 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGATAAGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 7.5e-007 0.620000 0.040000 0.000000 0.340000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.900000 0.000000 0.100000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.200000 0.600000 0.000000 0.900000 0.000000 0.100000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGATAAGA MEME-2 regular expression -------------------------------------------------------------------------------- [AT]GATAA[GAC]A -------------------------------------------------------------------------------- Time 14.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GARAAAGA MEME-3 width = 8 sites = 44 llr = 344 E-value = 2.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARAAAGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :958aa:a pos.-specific C 31:::::: probability G 7:32::a: matrix T ::2::::: bits 2.5 * 2.2 * 2.0 * 1.7 *** Relative 1.5 * **** Entropy 1.2 * ***** (11.3 bits) 1.0 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAAAAAGA consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAAGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:8254289-8254369 59 3.53e-05 GAAGATTACG GAAAAAGA TAATATGAGT chrX:15485425-15485505 34 3.53e-05 CACGCAGAAA GAAAAAGA AGGGTGTGAG chrIII:3478960-3479040 27 3.53e-05 GAATTTTTGA GAAAAAGA GATTTCAACC chrII:5103341-5103421 33 3.53e-05 agagatagag gaaaaaga tagaagatga chrX:10245358-10245438 67 3.53e-05 AAAAACACAT GAAAAAGA ACGATT chrX:6384692-6384772 5 3.53e-05 ACCT GAAAAAGA TAAATATCTT chrII:3955094-3955174 30 3.53e-05 AGTAAAAAAA GAAAAAGA AATCCCCCGT chrIV:11900543-11900623 10 3.53e-05 ATCTTTTCC GAAAAAGA CTTGTTATTG chrI:13502956-13503036 22 3.53e-05 GATTTCTTGA GAAAAAGA AAGACACCCC chrIV:3097160-3097240 45 3.53e-05 GAGACGCAGA GAAAAAGA CAACATTCAG chrV:802441-802521 35 5.65e-05 AGTTGGCCTT GAGAAAGA TTGCCATCTA chrIV:9723339-9723419 59 5.65e-05 GTTTTTGTGa gagaaaga gaaaaaaaga chrX:8858360-8858440 60 5.65e-05 CACTGACTGC GAGAAAGA TGTGGAGAAT chrV:4965920-4966000 66 5.65e-05 TGAAGAAGTA GAGAAAGA TTGGGAC chrI:7216244-7216324 46 9.01e-05 ATCAGTATCT CAAAAAGA TCTCTGATTT chrIV:9569719-9569799 32 9.01e-05 CATGTAAATG CAAAAAGA AGAACCTGCA chrX:6805564-6805644 28 9.01e-05 ATTAGTATCA CAAAAAGA GGAACGCACA chrI:9717450-9717530 52 9.01e-05 GTCACTTGAA CAAAAAGA ATGAATATGC chrX:6085331-6085411 41 9.01e-05 CAGATGTTAT CAAAAAGA TAGAAGGTTC chrIII:7301857-7301937 22 1.11e-04 CCCCCACGAC GAAGAAGA GGGCACTACT chrIII:3784179-3784259 72 1.11e-04 TATGAGAGGG GAAGAAGA T chrII:6115715-6115795 52 1.67e-04 TGAGATTTTA GATAAAGA TGAATTGCTT chrIV:9617533-9617613 48 1.67e-04 GTGAAAGAGT GATAAAGA TCTTTTGGGA chrX:7880987-7881067 56 1.67e-04 TAAAGAGGTT CAGAAAGA ATCACCGAGA chrX:12165109-12165189 40 1.67e-04 AGATTATGAC GATAAAGA GCAGAAGGCA chrIII:1238850-1238930 7 1.67e-04 GGGTGC GATAAAGA AGATAAATGC chrX:10227388-10227468 63 1.67e-04 GGCGGAACTC GATAAAGA TCCGCGGATC chrI:3706397-3706477 57 1.67e-04 AGATTGCAAT CAGAAAGA GGCTCGGAGA chrX:5479095-5479175 72 1.80e-04 GACCCGCCCG GAGGAAGA C chrV:7010593-7010673 57 1.80e-04 gaagaagcag gaggaaga agataagaag chrV:13110829-13110909 71 1.80e-04 AGAAAGTTTT GAGGAAGA TT chrII:1214800-1214880 19 2.00e-04 TAGATATGCA GCAAAAGA AACAGGCGGG chrX:12875108-12875188 69 2.00e-04 TCATCAAAAG GCAAAAGA GTTG chrI:10352005-10352085 68 2.00e-04 ATTGGTTATG GCAAAAGA AAAGG chrV:9218374-9218454 40 2.32e-04 CATCCTCCAC GCGAAAGA TCGAACTTGC chrIV:9613234-9613314 20 2.32e-04 ATGGAAATCT CAAGAAGA TTGCCGAGTC chrX:12881333-12881413 49 2.32e-04 ATTCCAAAAA CAAGAAGA TTGCAAGTTA chrIV:11599873-11599953 54 2.66e-04 AGGAAATCTT CATAAAGA TCTATCCCCG chrX:459465-459545 5 2.66e-04 TACT CATAAAGA TGTTATCAAT chrV:14601341-14601421 33 2.99e-04 GTGCCTAGGA GATGAAGA AGCACACTTT chrX:14267308-14267388 63 3.65e-04 CATCTAAAAG GGGAAAGA AGGGTGAGAC chrX:17535042-17535122 49 4.66e-04 TCTAGCAAAA CGAAAAGA TAGATGAATG chrV:4188212-4188292 60 4.92e-04 CTATTGGCAC GAGAGAGA CTGGTTCTTG chrII:8420168-8420248 59 6.41e-04 GTATAACTAC AAAAAAGA ATAAAAAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAAGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:8254289-8254369 3.5e-05 58_[+3]_14 chrX:15485425-15485505 3.5e-05 33_[+3]_39 chrIII:3478960-3479040 3.5e-05 26_[+3]_46 chrII:5103341-5103421 3.5e-05 32_[+3]_40 chrX:10245358-10245438 3.5e-05 66_[+3]_6 chrX:6384692-6384772 3.5e-05 4_[+3]_68 chrII:3955094-3955174 3.5e-05 29_[+3]_43 chrIV:11900543-11900623 3.5e-05 9_[+3]_63 chrI:13502956-13503036 3.5e-05 21_[+3]_51 chrIV:3097160-3097240 3.5e-05 44_[+3]_28 chrV:802441-802521 5.7e-05 34_[+3]_38 chrIV:9723339-9723419 5.7e-05 58_[+3]_14 chrX:8858360-8858440 5.7e-05 59_[+3]_13 chrV:4965920-4966000 5.7e-05 65_[+3]_7 chrI:7216244-7216324 9e-05 45_[+3]_27 chrIV:9569719-9569799 9e-05 31_[+3]_41 chrX:6805564-6805644 9e-05 27_[+3]_45 chrI:9717450-9717530 9e-05 51_[+3]_21 chrX:6085331-6085411 9e-05 40_[+3]_32 chrIII:7301857-7301937 0.00011 21_[+3]_51 chrIII:3784179-3784259 0.00011 71_[+3]_1 chrII:6115715-6115795 0.00017 51_[+3]_21 chrIV:9617533-9617613 0.00017 47_[+3]_25 chrX:7880987-7881067 0.00017 55_[+3]_17 chrX:12165109-12165189 0.00017 39_[+3]_33 chrIII:1238850-1238930 0.00017 6_[+3]_66 chrX:10227388-10227468 0.00017 62_[+3]_10 chrI:3706397-3706477 0.00017 56_[+3]_16 chrX:5479095-5479175 0.00018 71_[+3]_1 chrV:7010593-7010673 0.00018 56_[+3]_16 chrV:13110829-13110909 0.00018 70_[+3]_2 chrII:1214800-1214880 0.0002 18_[+3]_54 chrX:12875108-12875188 0.0002 68_[+3]_4 chrI:10352005-10352085 0.0002 67_[+3]_5 chrV:9218374-9218454 0.00023 39_[+3]_33 chrIV:9613234-9613314 0.00023 19_[+3]_53 chrX:12881333-12881413 0.00023 48_[+3]_24 chrIV:11599873-11599953 0.00027 53_[+3]_19 chrX:459465-459545 0.00027 4_[+3]_68 chrV:14601341-14601421 0.0003 32_[+3]_40 chrX:14267308-14267388 0.00036 62_[+3]_10 chrX:17535042-17535122 0.00047 48_[+3]_24 chrV:4188212-4188292 0.00049 59_[+3]_13 chrII:8420168-8420248 0.00064 58_[+3]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAAGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARAAAGA width=8 seqs=44 chrIV:8254289-8254369 ( 59) GAAAAAGA 1 chrX:15485425-15485505 ( 34) GAAAAAGA 1 chrIII:3478960-3479040 ( 27) GAAAAAGA 1 chrII:5103341-5103421 ( 33) GAAAAAGA 1 chrX:10245358-10245438 ( 67) GAAAAAGA 1 chrX:6384692-6384772 ( 5) GAAAAAGA 1 chrII:3955094-3955174 ( 30) GAAAAAGA 1 chrIV:11900543-11900623 ( 10) GAAAAAGA 1 chrI:13502956-13503036 ( 22) GAAAAAGA 1 chrIV:3097160-3097240 ( 45) GAAAAAGA 1 chrV:802441-802521 ( 35) GAGAAAGA 1 chrIV:9723339-9723419 ( 59) GAGAAAGA 1 chrX:8858360-8858440 ( 60) GAGAAAGA 1 chrV:4965920-4966000 ( 66) GAGAAAGA 1 chrI:7216244-7216324 ( 46) CAAAAAGA 1 chrIV:9569719-9569799 ( 32) CAAAAAGA 1 chrX:6805564-6805644 ( 28) CAAAAAGA 1 chrI:9717450-9717530 ( 52) CAAAAAGA 1 chrX:6085331-6085411 ( 41) CAAAAAGA 1 chrIII:7301857-7301937 ( 22) GAAGAAGA 1 chrIII:3784179-3784259 ( 72) GAAGAAGA 1 chrII:6115715-6115795 ( 52) GATAAAGA 1 chrIV:9617533-9617613 ( 48) GATAAAGA 1 chrX:7880987-7881067 ( 56) CAGAAAGA 1 chrX:12165109-12165189 ( 40) GATAAAGA 1 chrIII:1238850-1238930 ( 7) GATAAAGA 1 chrX:10227388-10227468 ( 63) GATAAAGA 1 chrI:3706397-3706477 ( 57) CAGAAAGA 1 chrX:5479095-5479175 ( 72) GAGGAAGA 1 chrV:7010593-7010673 ( 57) GAGGAAGA 1 chrV:13110829-13110909 ( 71) GAGGAAGA 1 chrII:1214800-1214880 ( 19) GCAAAAGA 1 chrX:12875108-12875188 ( 69) GCAAAAGA 1 chrI:10352005-10352085 ( 68) GCAAAAGA 1 chrV:9218374-9218454 ( 40) GCGAAAGA 1 chrIV:9613234-9613314 ( 20) CAAGAAGA 1 chrX:12881333-12881413 ( 49) CAAGAAGA 1 chrIV:11599873-11599953 ( 54) CATAAAGA 1 chrX:459465-459545 ( 5) CATAAAGA 1 chrV:14601341-14601421 ( 33) GATGAAGA 1 chrX:14267308-14267388 ( 63) GGGAAAGA 1 chrX:17535042-17535122 ( 49) CGAAAAGA 1 chrV:4188212-4188292 ( 60) GAGAGAGA 1 chrII:8420168-8420248 ( 59) AAAAAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAAGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.04855 E= 2.3e+000 -379 59 189 -1210 146 -99 -207 -1210 79 -1210 52 -79 138 -1210 -7 -1210 163 -1210 -306 -1210 167 -1210 -1210 -1210 -1210 -1210 239 -1210 167 -1210 -1210 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAAGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 2.3e+000 0.022727 0.272727 0.704545 0.000000 0.863636 0.090909 0.045455 0.000000 0.545455 0.000000 0.272727 0.181818 0.818182 0.000000 0.181818 0.000000 0.977273 0.000000 0.022727 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAAGA MEME-3 regular expression -------------------------------------------------------------------------------- [GC]A[AG]AAAGA -------------------------------------------------------------------------------- Time 17.86 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCCCRC MEME-4 width = 8 sites = 2 llr = 25 E-value = 6.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCCCRC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::5: pos.-specific C aaaaaa:a probability G ::::::5: matrix T :::::::: bits 2.5 ****** * 2.2 ****** * 2.0 ****** * 1.7 ****** * Relative 1.5 ****** * Entropy 1.2 ****** * (18.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCCAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCRC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:985226-985306 40 1.21e-06 TTCAATTTTG CCCCCCGC GCTCTTAGAT chrIII:7301857-7301937 11 3.21e-06 GCATTGATTT CCCCCCAC GACGAAGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCRC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:985226-985306 1.2e-06 39_[+4]_33 chrIII:7301857-7301937 3.2e-06 10_[+4]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCRC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCCCRC width=8 seqs=2 chrI:985226-985306 ( 40) CCCCCCGC 1 chrIII:7301857-7301937 ( 11) CCCCCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCRC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 6.8e+003 -765 246 -765 -765 -765 246 -765 -765 -765 246 -765 -765 -765 246 -765 -765 -765 246 -765 -765 -765 246 -765 -765 67 -765 139 -765 -765 246 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCRC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.8e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCRC MEME-4 regular expression -------------------------------------------------------------------------------- CCCCCC[AG]C -------------------------------------------------------------------------------- Time 21.22 secs. ******************************************************************************** ******************************************************************************** MOTIF TYTYTYTC MEME-5 width = 8 sites = 39 llr = 312 E-value = 3.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :435:5:a probability G :::::::: matrix T a675a5a: bits 2.5 * 2.2 * 2.0 * 1.7 * ** Relative 1.5 * * ** Entropy 1.2 * * ** (11.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTTTC consensus CCT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:5297852-5297932 68 2.85e-05 TAGGGGTCAG TTTCTCTC GCTTC chrI:7216244-7216324 62 2.85e-05 GATCTCTGAT TTTCTCTC CCTCTTTCTC chrX:8987950-8988030 9 2.85e-05 CTCATCCT TTTCTCTC ATCAACTTTA chrX:12875108-12875188 40 2.85e-05 GATCTATCCT TCTCTCTC AGTTACACAC chrIV:1869166-1869246 67 2.85e-05 CCATTCAAGA TTTCTCTC ATCCTA chrI:8561754-8561834 68 2.85e-05 TATTTCGAAT TCTCTCTC TATGT chrIII:13174746-13174826 17 2.85e-05 TTCCTTCATT TTTCTCTC TTTTTTTTTC chrX:15219664-15219744 22 9.45e-05 ATTCTCAATC TCTCTTTC TAAAGGGCGA chrIII:4392106-4392186 56 9.45e-05 TCGTTTTTCC TTCCTCTC TAGCAACTGG chrIV:9617533-9617613 19 9.45e-05 GCGGTAGGTA TCCCTCTC TAGTCGAGAG chrX:905916-905996 2 9.45e-05 A TTTCTTTC AGATAAAATT chrIV:12531602-12531682 5 9.45e-05 TGTG TTCCTCTC GGTTCCATCT chrV:14603943-14604023 54 9.45e-05 GCTCGTTATC TTTCTTTC CCATTCTCAT chrII:9679635-9679715 6 9.45e-05 AGATT TTTCTTTC CTGATCACAT chrI:5727422-5727502 69 9.45e-05 GAATTTCAGT TTTCTTTC AGAA chrI:3706397-3706477 20 9.45e-05 GTGCACAAGC TCTCTTTC ACTGGCTCGC chrI:6886635-6886715 30 9.45e-05 ACTCAAACCA TCTCTTTC CTTACTGATA chrII:8912682-8912762 73 1.44e-04 ctttttcttt tttttctc chrI:9717450-9717530 25 1.44e-04 ATTGTCTTGC TTTTTCTC CTCTTTTCTG chrIV:9608104-9608184 42 1.44e-04 AAACATGAGA TTTTTCTC GTTCAATTGT chrV:10287194-10287274 40 1.44e-04 TGTGCATCGT TTTTTCTC TAATATCTCT chrV:5426510-5426590 16 1.73e-04 TAAAACGCAA TTCCTTTC AAGACAAAAT chrII:13007845-13007925 2 1.73e-04 G TTCCTTTC TTCTTATTCT chrV:4920242-4920322 66 2.87e-04 CTCACCTGTC TTTttttc attttat chrX:2902952-2903032 12 2.87e-04 CCTATTTATA TTCTTCTC CCGTTGTTGG chrX:17510731-17510811 13 2.87e-04 AATTTTTCTG TCCTTCTC ACCGAAATGC chrII:8419256-8419336 43 2.87e-04 CGCAAGCTTC TCCTTCTC TTCACATTTC chrIII:12016237-12016317 40 2.87e-04 TTCAAATAGT TTTTTTTC TATATTTTAT chrX:15368167-15368247 7 2.87e-04 ATTTTT TTTTTTTC TGAAGAGATT chrIV:1915070-1915150 65 2.87e-04 TAGcttcttc ttcttctc catcttct chrV:6471369-6471449 69 2.87e-04 TTCTTATTTT TCTTTTTC CTCG chrI:9807882-9807962 17 2.87e-04 GATTTTCACC TCTTTTTC AGTTTTTTTC chrX:9458306-9458386 53 2.87e-04 ATCTCCCTTC TTTTTTTC GAAAACACCG chrIV:10916268-10916348 59 2.87e-04 CACCAACTGA TCTTTTTC TTTACTCCTA chrIV:7234782-7234862 40 2.87e-04 TTGGAAAGAT TCTTTTTC TGTTGATCTT chrIV:8589172-8589252 6 2.87e-04 TCCAC TTTTTTTC ATTATAAGAT chrX:11504604-11504684 37 2.87e-04 TTACAGCATT TCTTTTTC GCTTTCAAAA chrIII:8501785-8501865 10 3.36e-04 GACATGCAT TCCTTTTC AATCGAGATC chrII:10959322-10959402 22 3.53e-04 AGTTAAACCT TCTCCCTC TACTCCCATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:5297852-5297932 2.9e-05 67_[+5]_5 chrI:7216244-7216324 2.9e-05 61_[+5]_11 chrX:8987950-8988030 2.9e-05 8_[+5]_64 chrX:12875108-12875188 2.9e-05 39_[+5]_33 chrIV:1869166-1869246 2.9e-05 66_[+5]_6 chrI:8561754-8561834 2.9e-05 67_[+5]_5 chrIII:13174746-13174826 2.9e-05 16_[+5]_56 chrX:15219664-15219744 9.4e-05 21_[+5]_51 chrIII:4392106-4392186 9.4e-05 55_[+5]_17 chrIV:9617533-9617613 9.4e-05 18_[+5]_54 chrX:905916-905996 9.4e-05 1_[+5]_71 chrIV:12531602-12531682 9.4e-05 4_[+5]_68 chrV:14603943-14604023 9.4e-05 53_[+5]_19 chrII:9679635-9679715 9.4e-05 5_[+5]_67 chrI:5727422-5727502 9.4e-05 68_[+5]_4 chrI:3706397-3706477 9.4e-05 19_[+5]_53 chrI:6886635-6886715 9.4e-05 29_[+5]_43 chrII:8912682-8912762 0.00014 72_[+5] chrI:9717450-9717530 0.00014 24_[+5]_48 chrIV:9608104-9608184 0.00014 41_[+5]_31 chrV:10287194-10287274 0.00014 39_[+5]_33 chrV:5426510-5426590 0.00017 15_[+5]_57 chrII:13007845-13007925 0.00017 1_[+5]_71 chrV:4920242-4920322 0.00029 65_[+5]_7 chrX:2902952-2903032 0.00029 11_[+5]_61 chrX:17510731-17510811 0.00029 12_[+5]_60 chrII:8419256-8419336 0.00029 42_[+5]_30 chrIII:12016237-12016317 0.00029 39_[+5]_33 chrX:15368167-15368247 0.00029 6_[+5]_66 chrIV:1915070-1915150 0.00029 64_[+5]_8 chrV:6471369-6471449 0.00029 68_[+5]_4 chrI:9807882-9807962 0.00029 16_[+5]_56 chrX:9458306-9458386 0.00029 52_[+5]_20 chrIV:10916268-10916348 0.00029 58_[+5]_14 chrIV:7234782-7234862 0.00029 39_[+5]_33 chrIV:8589172-8589252 0.00029 5_[+5]_67 chrX:11504604-11504684 0.00029 36_[+5]_36 chrIII:8501785-8501865 0.00034 9_[+5]_63 chrII:10959322-10959402 0.00035 21_[+5]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTYTYTC width=8 seqs=39 chrII:5297852-5297932 ( 68) TTTCTCTC 1 chrI:7216244-7216324 ( 62) TTTCTCTC 1 chrX:8987950-8988030 ( 9) TTTCTCTC 1 chrX:12875108-12875188 ( 40) TCTCTCTC 1 chrIV:1869166-1869246 ( 67) TTTCTCTC 1 chrI:8561754-8561834 ( 68) TCTCTCTC 1 chrIII:13174746-13174826 ( 17) TTTCTCTC 1 chrX:15219664-15219744 ( 22) TCTCTTTC 1 chrIII:4392106-4392186 ( 56) TTCCTCTC 1 chrIV:9617533-9617613 ( 19) TCCCTCTC 1 chrX:905916-905996 ( 2) TTTCTTTC 1 chrIV:12531602-12531682 ( 5) TTCCTCTC 1 chrV:14603943-14604023 ( 54) TTTCTTTC 1 chrII:9679635-9679715 ( 6) TTTCTTTC 1 chrI:5727422-5727502 ( 69) TTTCTTTC 1 chrI:3706397-3706477 ( 20) TCTCTTTC 1 chrI:6886635-6886715 ( 30) TCTCTTTC 1 chrII:8912682-8912762 ( 73) TTTTTCTC 1 chrI:9717450-9717530 ( 25) TTTTTCTC 1 chrIV:9608104-9608184 ( 42) TTTTTCTC 1 chrV:10287194-10287274 ( 40) TTTTTCTC 1 chrV:5426510-5426590 ( 16) TTCCTTTC 1 chrII:13007845-13007925 ( 2) TTCCTTTC 1 chrV:4920242-4920322 ( 66) TTTTTTTC 1 chrX:2902952-2903032 ( 12) TTCTTCTC 1 chrX:17510731-17510811 ( 13) TCCTTCTC 1 chrII:8419256-8419336 ( 43) TCCTTCTC 1 chrIII:12016237-12016317 ( 40) TTTTTTTC 1 chrX:15368167-15368247 ( 7) TTTTTTTC 1 chrIV:1915070-1915150 ( 65) TTCTTCTC 1 chrV:6471369-6471449 ( 69) TCTTTTTC 1 chrI:9807882-9807962 ( 17) TCTTTTTC 1 chrX:9458306-9458386 ( 53) TTTTTTTC 1 chrIV:10916268-10916348 ( 59) TCTTTTTC 1 chrIV:7234782-7234862 ( 40) TCTTTTTC 1 chrIV:8589172-8589252 ( 6) TTTTTTTC 1 chrX:11504604-11504684 ( 37) TCTTTTTC 1 chrIII:8501785-8501865 ( 10) TCCTTTTC 1 chrII:10959322-10959402 ( 22) TCTCCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9222 E= 3.0e+001 -1193 -1193 -1193 167 -1193 109 -1193 97 -1193 51 -1193 124 -1193 151 -1193 63 -1193 -281 -1193 163 -1193 143 -1193 71 -1193 -1193 -1193 167 -1193 247 -1193 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 3.0e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.384615 0.000000 0.615385 0.000000 0.256410 0.000000 0.743590 0.000000 0.512821 0.000000 0.487179 0.000000 0.025641 0.000000 0.974359 0.000000 0.487179 0.000000 0.512821 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-5 regular expression -------------------------------------------------------------------------------- T[TC][TC][CT]T[TC]TC -------------------------------------------------------------------------------- Time 24.62 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12881333-12881413 2.82e-01 80 chrIV:9609252-9609332 7.09e-01 80 chrIV:3097160-3097240 3.54e-02 44_[+3(3.53e-05)]_28 chrIV:9611095-9611175 2.59e-01 80 chrIII:6290628-6290708 1.91e-01 80 chrV:9500963-9501043 3.71e-01 80 chrV:3355665-3355745 1.51e-01 80 chrII:12965308-12965388 2.57e-01 80 chrI:8786275-8786355 1.36e-01 80 chrV:10909381-10909461 6.64e-01 80 chrX:459465-459545 2.31e-02 80 chrI:3709329-3709409 4.04e-02 80 chrIV:486951-487031 1.78e-01 80 chrI:6886635-6886715 9.84e-03 29_[+5(9.45e-05)]_43 chrX:11504604-11504684 9.10e-03 80 chrV:10287194-10287274 6.51e-03 80 chrI:13502956-13503036 1.38e-03 5_[+2(7.02e-05)]_8_[+3(3.53e-05)]_\ 51 chrII:4294378-4294458 7.30e-01 80 chrIV:7808727-7808807 3.71e-02 80 chrV:13110829-13110909 3.28e-02 80 chrIV:7983183-7983263 3.05e-01 80 chrX:10191983-10192063 5.86e-02 80 chrI:11490620-11490700 1.76e-01 80 chrV:7511854-7511934 9.37e-01 80 chrV:4965920-4966000 1.68e-02 36_[+2(7.02e-05)]_21_[+3(5.65e-05)]_\ 7 chrIII:8578536-8578616 5.35e-01 80 chrX:6085331-6085411 3.25e-02 40_[+3(9.01e-05)]_32 chrIV:16499942-16500022 3.51e-01 80 chrIV:6925655-6925735 3.49e-01 80 chrV:11858417-11858497 1.12e-01 80 chrIV:8589172-8589252 5.82e-03 80 chrV:7248930-7249010 5.04e-03 44_[+2(7.02e-05)]_28 chrII:8359740-8359820 7.27e-01 80 chrX:8501095-8501175 4.23e-01 80 chrII:8853396-8853476 2.01e-01 17_[+1(3.91e-05)]_55 chrII:10903229-10903309 8.88e-02 80 chrI:3706397-3706477 1.57e-02 19_[+5(9.45e-05)]_53 chrI:3512959-3513039 6.32e-02 80 chrV:7010593-7010673 1.67e-02 64_[+2(3.52e-05)]_8 chrV:12105756-12105836 3.87e-01 80 chrX:3396903-3396983 3.15e-01 80 chrI:10352005-10352085 2.81e-02 80 chrII:11733978-11734058 1.24e-01 80 chrV:18907709-18907789 2.53e-02 80 chrIV:9614235-9614315 1.89e-03 5_[+2(7.02e-05)]_8_[+1(3.91e-05)]_\ 51 chrI:5727422-5727502 1.01e-02 68_[+5(9.45e-05)]_4 chrX:10227388-10227468 3.28e-02 80 chrIV:5760348-5760428 6.02e-02 80 chrIV:9608104-9608184 4.85e-02 80 chrII:10426870-10426950 2.79e-01 80 chrII:9679635-9679715 1.26e-02 5_[+5(9.45e-05)]_67 chrX:14339027-14339107 2.48e-01 80 chrIV:10246610-10246690 5.64e-01 80 chrIII:8574062-8574142 5.55e-01 80 chrIII:4102198-4102278 5.50e-03 13_[+2(3.52e-05)]_59 chrV:11779458-11779538 4.70e-01 80 chrII:512129-512209 8.02e-02 52_[+2(7.02e-05)]_20 chrX:8858360-8858440 7.12e-03 14_[+3(9.01e-05)]_5_[+2(3.52e-05)]_\ 24_[+3(5.65e-05)]_13 chrIV:3165502-3165582 1.89e-02 80 chrIV:9289814-9289894 1.36e-01 80 chrIV:11900543-11900623 6.55e-02 9_[+3(3.53e-05)]_63 chrIII:13174746-13174826 2.83e-02 16_[+5(2.85e-05)]_56 chrIV:4261298-4261378 3.35e-01 80 chrIV:7234782-7234862 2.88e-02 80 chrII:12635074-12635154 1.63e-01 80 chrX:3879778-3879858 5.32e-02 80 chrV:541639-541719 8.87e-01 80 chrIV:9723339-9723419 3.74e-02 58_[+3(5.65e-05)]_14 chrIV:5761362-5761442 5.11e-01 80 chrV:17236484-17236564 3.69e-02 80 chrIV:5519206-5519286 2.96e-02 80 chrIV:8255400-8255480 2.01e-01 29_[+2(3.52e-05)]_43 chrIV:10916268-10916348 8.49e-02 80 chrV:9502516-9502596 2.91e-02 80 chrV:14976932-14977012 6.74e-01 80 chrII:10959322-10959402 1.83e-02 80 chrIV:8273589-8273669 9.11e-02 80 chrII:5592992-5593072 3.60e-02 80 chrX:585970-586050 9.85e-02 80 chrIV:11599873-11599953 4.65e-04 34_[+2(3.52e-05)]_38 chrV:16911873-16911953 8.25e-02 80 chrV:14603943-14604023 4.52e-03 53_[+5(9.45e-05)]_19 chrX:13771878-13771958 1.53e-01 80 chrI:9717450-9717530 1.12e-02 51_[+3(9.01e-05)]_21 chrII:3955094-3955174 1.67e-03 29_[+3(3.53e-05)]_43 chrIV:12531602-12531682 1.96e-02 4_[+5(9.45e-05)]_68 chrX:14267308-14267388 4.45e-02 80 chrIII:1238850-1238930 2.11e-02 80 chrV:16761426-16761506 3.30e-01 80 chrX:13142982-13143062 2.84e-01 80 chrIV:5758834-5758914 3.10e-01 80 chrII:8953875-8953955 7.20e-01 80 chrV:597105-597185 5.42e-01 80 chrIV:7501059-7501139 4.63e-01 80 chrIII:13272968-13273048 4.41e-01 80 chrI:985226-985306 2.02e-03 39_[+4(1.21e-06)]_33 chrV:543281-543361 3.06e-02 80 chrX:4939403-4939483 2.64e-01 80 chrII:544214-544294 1.08e-01 80 chrV:4661322-4661402 1.92e-01 80 chrX:1587239-1587319 1.58e-01 80 chrV:14815468-14815548 3.34e-01 80 chrII:9696290-9696370 2.00e-01 80 chrX:3934988-3935068 2.55e-01 80 chrX:6805564-6805644 1.15e-02 10_[+2(3.52e-05)]_9_[+3(9.01e-05)]_\ 45 chrX:9512592-9512672 2.39e-01 80 chrIV:5762472-5762552 6.78e-01 80 chrIII:5841334-5841414 3.34e-01 80 chrV:597986-598066 6.75e-01 80 chrI:13400850-13400930 9.85e-02 80 chrII:13007845-13007925 2.39e-01 80 chrIII:547881-547961 1.25e-02 80 chrI:5187533-5187613 6.83e-01 80 chrV:6735307-6735387 9.49e-02 80 chrIV:5885351-5885431 3.60e-01 80 chrV:4188212-4188292 1.18e-01 80 chrIV:9611765-9611845 4.59e-01 80 chrI:9810754-9810834 3.53e-01 80 chrX:9458306-9458386 4.77e-02 80 chrV:8618873-8618953 2.03e-01 80 chrV:14601341-14601421 5.61e-02 80 chrII:3862223-3862303 3.53e-01 80 chrV:802441-802521 1.54e-02 34_[+3(5.65e-05)]_38 chrIV:8175863-8175943 3.77e-01 80 chrX:10765170-10765250 5.86e-01 80 chrII:11888290-11888370 3.63e-02 55_[+2(3.52e-05)]_17 chrX:6321562-6321642 1.61e-01 80 chrIV:14086604-14086684 1.13e-01 80 chrX:15021517-15021597 4.37e-01 80 chrI:9854896-9854976 5.23e-01 80 chrX:9456729-9456809 3.08e-01 80 chrIII:1818437-1818517 2.98e-01 80 chrV:5426510-5426590 6.72e-02 80 chrIII:10306220-10306300 5.87e-01 80 chrV:14500202-14500282 1.93e-02 65_[+2(3.52e-05)]_7 chrX:12165109-12165189 1.47e-01 80 chrV:11356051-11356131 5.80e-01 80 chrIV:9569719-9569799 1.42e-01 31_[+3(9.01e-05)]_41 chrI:4493533-4493613 2.87e-01 80 chrX:5479095-5479175 5.56e-04 80 chrV:6989886-6989966 1.96e-01 80 chrI:8989704-8989784 8.44e-02 80 chrI:9807882-9807962 5.89e-02 80 chrV:12539605-12539685 9.16e-02 33_[+1(3.91e-05)]_39 chrIV:7826171-7826251 3.39e-01 80 chrV:6471369-6471449 2.82e-01 80 chrIII:8621157-8621237 1.20e-01 80 chrIV:8247491-8247571 1.84e-01 80 chrIV:11882675-11882755 5.62e-01 80 chrI:8561754-8561834 2.03e-02 67_[+5(2.85e-05)]_5 chrIV:9232603-9232683 3.49e-01 80 chrIV:1869166-1869246 3.21e-02 66_[+5(2.85e-05)]_6 chrX:6384692-6384772 7.63e-04 4_[+3(3.53e-05)]_68 chrX:12875108-12875188 6.56e-04 39_[+5(2.85e-05)]_33 chrX:8987950-8988030 4.80e-03 8_[+5(2.85e-05)]_64 chrII:7238997-7239077 1.96e-01 80 chrIV:1915070-1915150 5.52e-02 80 chrX:10245358-10245438 2.02e-02 66_[+3(3.53e-05)]_6 chrX:5061906-5061986 3.79e-01 80 chrIV:9613234-9613314 1.33e-01 80 chrI:12453188-12453268 6.95e-02 80 chrX:4569418-4569498 4.03e-01 80 chrX:905916-905996 1.67e-02 1_[+5(9.45e-05)]_71 chrII:8420168-8420248 1.61e-01 80 chrX:15368167-15368247 2.91e-02 80 chrIII:6297439-6297519 2.51e-01 80 chrIII:12016237-12016317 1.66e-01 80 chrV:11464787-11464867 8.40e-01 80 chrIII:5965481-5965561 5.16e-02 80 chrX:12824856-12824936 1.01e-01 80 chrV:4482006-4482086 5.72e-01 80 chrV:1618634-1618714 1.25e-01 80 chrV:15773539-15773619 2.51e-01 80 chrX:5026612-5026692 8.70e-01 80 chrX:15311131-15311211 5.07e-02 80 chrII:4907646-4907726 3.10e-02 80 chrV:12412095-12412175 1.56e-02 80 chrV:800433-800513 7.91e-01 80 chrX:11726605-11726685 4.80e-01 80 chrV:16263971-16264051 5.69e-01 80 chrI:7216244-7216324 7.73e-04 45_[+3(9.01e-05)]_8_[+5(2.85e-05)]_\ 11 chrX:3547242-3547322 1.34e-02 66_[+1(3.91e-05)]_6 chrII:9921293-9921373 1.54e-01 80 chrII:8419256-8419336 3.87e-01 80 chrII:10994003-10994083 2.77e-02 80 chrX:10302603-10302683 3.39e-01 80 chrX:17510731-17510811 5.33e-02 80 chrX:15713331-15713411 5.48e-01 80 chrIV:5706451-5706531 1.03e-01 80 chrX:3164099-3164179 1.65e-01 80 chrII:5103341-5103421 1.27e-01 32_[+3(3.53e-05)]_40 chrX:15042707-15042787 4.35e-02 80 chrII:5297852-5297932 4.56e-03 67_[+5(2.85e-05)]_5 chrX:6710819-6710899 1.46e-02 80 chrIII:9270356-9270436 5.72e-01 80 chrX:17535042-17535122 9.61e-03 80 chrII:8823309-8823389 4.86e-01 80 chrIII:9991495-9991575 3.26e-02 64_[+2(3.52e-05)]_8 chrV:8437451-8437531 4.05e-01 80 chrX:15470138-15470218 7.88e-01 80 chrIII:3784179-3784259 2.13e-02 80 chrII:5784758-5784838 3.33e-01 80 chrV:14577166-14577246 8.36e-02 80 chrII:1214800-1214880 6.13e-02 80 chrX:7880987-7881067 1.91e-02 70_[+2(3.52e-05)]_2 chrI:2842127-2842207 6.11e-02 80 chrIII:13659182-13659262 7.91e-01 80 chrI:11348703-11348783 6.58e-02 80 chrIII:3478960-3479040 4.84e-03 26_[+3(3.53e-05)]_46 chrIV:13014137-13014217 2.11e-02 80 chrII:2436909-2436989 3.09e-02 80 chrX:6671837-6671917 3.77e-01 80 chrV:6498593-6498673 7.89e-02 80 chrIV:9617533-9617613 1.56e-03 18_[+5(9.45e-05)]_54 chrX:6665256-6665336 1.50e-01 40_[+2(7.02e-05)]_32 chrV:13333556-13333636 7.58e-01 80 chrIV:14729421-14729501 5.81e-01 80 chrX:2902952-2903032 2.11e-01 80 chrV:4920242-4920322 6.18e-04 10_[+2(7.02e-05)]_[+1(3.91e-05)]_54 chrV:801843-801923 1.87e-01 80 chrIV:2463480-2463560 4.18e-01 80 chrIII:13381063-13381143 8.57e-01 80 chrV:9218374-9218454 4.83e-02 80 chrIV:10253044-10253124 3.04e-01 80 chrIII:8501785-8501865 1.26e-01 80 chrX:15485425-15485505 1.24e-01 33_[+3(3.53e-05)]_39 chrII:5487231-5487311 1.43e-01 80 chrII:8912682-8912762 1.06e-02 80 chrI:8935357-8935437 1.17e-01 80 chrIII:4392106-4392186 2.70e-02 55_[+5(9.45e-05)]_17 chrV:19350418-19350498 6.87e-02 80 chrX:15219664-15219744 9.14e-02 21_[+5(9.45e-05)]_51 chrV:539191-539271 7.38e-01 80 chrII:4982162-4982242 3.44e-01 80 chrII:4583647-4583727 1.02e-01 80 chrII:13955147-13955227 1.96e-01 80 chrV:10045919-10045999 5.78e-01 80 chrIII:7301857-7301937 1.55e-04 10_[+4(3.21e-06)]_62 chrX:14488021-14488101 2.63e-02 80 chrII:6419329-6419409 8.15e-01 80 chrI:11104198-11104278 4.47e-01 80 chrX:7328328-7328408 1.78e-01 80 chrX:17097004-17097084 7.96e-01 80 chrII:4759984-4760064 2.66e-01 80 chrIV:3868671-3868751 6.30e-01 80 chrII:9356133-9356213 2.53e-01 80 chrIV:8254289-8254369 1.75e-02 58_[+3(3.53e-05)]_14 chrII:6115715-6115795 3.86e-02 80 chrIV:6496275-6496355 1.37e-02 70_[+2(3.52e-05)]_2 chrIV:5506764-5506844 3.55e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************