******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/egl-5.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:7819124-7819204 1.0000 80 chrIII:7807106-7807186 1.0000 80 chrIII:11448483-11448563 1.0000 80 chrIII:7809192-7809272 1.0000 80 chrIII:7805412-7805492 1.0000 80 chrIII:4603996-4604076 1.0000 80 chrX:8903079-8903159 1.0000 80 chrX:17428962-17429042 1.0000 80 chrX:9483913-9483993 1.0000 80 chrV:11204611-11204691 1.0000 80 chrX:12641087-12641167 1.0000 80 chrIV:11493033-11493113 1.0000 80 chrX:12438393-12438473 1.0000 80 chrV:7041176-7041256 1.0000 80 chrIV:11815127-11815207 1.0000 80 chrI:3955473-3955553 1.0000 80 chrX:12529668-12529748 1.0000 80 chrIII:7806544-7806624 1.0000 80 chrV:8552677-8552757 1.0000 80 chrV:13778027-13778107 1.0000 80 chrI:10065424-10065504 1.0000 80 chrX:11032610-11032690 1.0000 80 chrX:1167413-1167493 1.0000 80 chrIII:459934-460014 1.0000 80 chrII:12658563-12658643 1.0000 80 chrI:5502583-5502663 1.0000 80 chrV:12488147-12488227 1.0000 80 chrII:4288001-4288081 1.0000 80 chrV:12334581-12334661 1.0000 80 chrIII:7808331-7808411 1.0000 80 chrX:7522795-7522875 1.0000 80 chrV:14616638-14616718 1.0000 80 chrIII:7820039-7820119 1.0000 80 chrIII:7812667-7812747 1.0000 80 chrX:1283460-1283540 1.0000 80 chrIII:7814284-7814364 1.0000 80 chrX:5189170-5189250 1.0000 80 chrIV:12550936-12551016 1.0000 80 chrII:7850717-7850797 1.0000 80 chrX:8764229-8764309 1.0000 80 chrX:10022181-10022261 1.0000 80 chrIII:13489880-13489960 1.0000 80 chrII:5699064-5699144 1.0000 80 chrIII:11202158-11202238 1.0000 80 chrIV:8847104-8847184 1.0000 80 chrX:9475059-9475139 1.0000 80 chrIV:13902899-13902979 1.0000 80 chrX:8954946-8955026 1.0000 80 chrI:4223232-4223312 1.0000 80 chrX:3600025-3600105 1.0000 80 chrV:1239633-1239713 1.0000 80 chrIII:822725-822805 1.0000 80 chrX:17430659-17430739 1.0000 80 chrX:13200471-13200551 1.0000 80 chrIV:3002996-3003076 1.0000 80 chrV:5966095-5966175 1.0000 80 chrIV:11574499-11574579 1.0000 80 chrIV:11799350-11799430 1.0000 80 chrV:8460969-8461049 1.0000 80 chrII:5220820-5220900 1.0000 80 chrI:11803720-11803800 1.0000 80 chrV:11214710-11214790 1.0000 80 chrIII:9091847-9091927 1.0000 80 chrII:7211491-7211571 1.0000 80 chrI:11105812-11105892 1.0000 80 chrV:11210656-11210736 1.0000 80 chrX:11548896-11548976 1.0000 80 chrII:4576253-4576333 1.0000 80 chrIII:3584824-3584904 1.0000 80 chrX:4804061-4804141 1.0000 80 chrX:14496727-14496807 1.0000 80 chrIV:11787961-11788041 1.0000 80 chrV:6463820-6463900 1.0000 80 chrIII:8228518-8228598 1.0000 80 chrX:15580627-15580707 1.0000 80 chrX:2469700-2469780 1.0000 80 chrX:12915866-12915946 1.0000 80 chrIV:13692681-13692761 1.0000 80 chrIV:13948972-13949052 1.0000 80 chrII:5305128-5305208 1.0000 80 chrX:2795194-2795274 1.0000 80 chrX:16772492-16772572 1.0000 80 chrX:13884456-13884536 1.0000 80 chrII:15148582-15148662 1.0000 80 chrX:11547740-11547820 1.0000 80 chrIII:8291445-8291525 1.0000 80 chrX:5202017-5202097 1.0000 80 chrI:10039865-10039945 1.0000 80 chrII:14672128-14672208 1.0000 80 chrI:2678208-2678288 1.0000 80 chrI:7043313-7043393 1.0000 80 chrI:3154689-3154769 1.0000 80 chrX:3156320-3156400 1.0000 80 chrIV:10812223-10812303 1.0000 80 chrX:4154939-4155019 1.0000 80 chrX:10130302-10130382 1.0000 80 chrIV:8091728-8091808 1.0000 80 chrIII:5686585-5686665 1.0000 80 chrI:6894009-6894089 1.0000 80 chrIII:467177-467257 1.0000 80 chrIV:9079481-9079561 1.0000 80 chrIII:7824211-7824291 1.0000 80 chrIV:11716574-11716654 1.0000 80 chrV:14485079-14485159 1.0000 80 chrX:11364830-11364910 1.0000 80 chrX:4959601-4959681 1.0000 80 chrII:8318729-8318809 1.0000 80 chrII:6482227-6482307 1.0000 80 chrV:2802052-2802132 1.0000 80 chrIV:2941724-2941804 1.0000 80 chrX:6977982-6978062 1.0000 80 chrX:13873840-13873920 1.0000 80 chrV:14985922-14986002 1.0000 80 chrI:12677787-12677867 1.0000 80 chrI:8495824-8495904 1.0000 80 chrII:5449445-5449525 1.0000 80 chrIV:7722956-7723036 1.0000 80 chrII:9299867-9299947 1.0000 80 chrII:7851572-7851652 1.0000 80 chrII:7651446-7651526 1.0000 80 chrI:940374-940454 1.0000 80 chrII:14929706-14929786 1.0000 80 chrII:5299779-5299859 1.0000 80 chrI:4940115-4940195 1.0000 80 chrI:7044870-7044950 1.0000 80 chrX:4628961-4629041 1.0000 80 chrX:3984909-3984989 1.0000 80 chrX:6133297-6133377 1.0000 80 chrX:6036819-6036899 1.0000 80 chrV:7740830-7740910 1.0000 80 chrX:7974079-7974159 1.0000 80 chrI:4431870-4431950 1.0000 80 chrII:7981264-7981344 1.0000 80 chrX:10907519-10907599 1.0000 80 chrX:2508697-2508777 1.0000 80 chrX:9842278-9842358 1.0000 80 chrX:12432848-12432928 1.0000 80 chrX:14674030-14674110 1.0000 80 chrIII:213712-213792 1.0000 80 chrII:10979499-10979579 1.0000 80 chrII:11794051-11794131 1.0000 80 chrV:14809099-14809179 1.0000 80 chrIV:12817661-12817741 1.0000 80 chrIII:7811119-7811199 1.0000 80 chrII:5223047-5223127 1.0000 80 chrII:8313751-8313831 1.0000 80 chrX:15105238-15105318 1.0000 80 chrV:983895-983975 1.0000 80 chrX:4421125-4421205 1.0000 80 chrI:3889363-3889443 1.0000 80 chrIII:3590548-3590628 1.0000 80 chrV:20218828-20218908 1.0000 80 chrV:14569307-14569387 1.0000 80 chrV:1399567-1399647 1.0000 80 chrV:4509464-4509544 1.0000 80 chrX:7945514-7945594 1.0000 80 chrX:12187566-12187646 1.0000 80 chrIII:3437314-3437394 1.0000 80 chrIV:7723557-7723637 1.0000 80 chrI:2706189-2706269 1.0000 80 chrX:12545923-12546003 1.0000 80 chrII:5050096-5050176 1.0000 80 chrV:3677408-3677488 1.0000 80 chrV:10201659-10201739 1.0000 80 chrII:5702726-5702806 1.0000 80 chrX:10395056-10395136 1.0000 80 chrIII:11454411-11454491 1.0000 80 chrX:9069275-9069355 1.0000 80 chrI:5996786-5996866 1.0000 80 chrIV:7816897-7816977 1.0000 80 chrII:6176326-6176406 1.0000 80 chrIII:7829093-7829173 1.0000 80 chrX:6894231-6894311 1.0000 80 chrX:3526574-3526654 1.0000 80 chrII:6642794-6642874 1.0000 80 chrX:10160344-10160424 1.0000 80 chrIII:7755529-7755609 1.0000 80 chrX:7491831-7491911 1.0000 80 chrX:4901744-4901824 1.0000 80 chrV:14093946-14094026 1.0000 80 chrIV:1279126-1279206 1.0000 80 chrI:8315355-8315435 1.0000 80 chrV:11857868-11857948 1.0000 80 chrV:6797751-6797831 1.0000 80 chrII:6017339-6017419 1.0000 80 chrI:11662892-11662972 1.0000 80 chrV:11620235-11620315 1.0000 80 chrIV:16482858-16482938 1.0000 80 chrIII:564984-565064 1.0000 80 chrII:8962445-8962525 1.0000 80 chrX:15014088-15014168 1.0000 80 chrV:15663041-15663121 1.0000 80 chrIV:12424329-12424409 1.0000 80 chrII:4965739-4965819 1.0000 80 chrIV:7659684-7659764 1.0000 80 chrX:6551179-6551259 1.0000 80 chrIV:740912-740992 1.0000 80 chrX:11368943-11369023 1.0000 80 chrV:14909189-14909269 1.0000 80 chrX:7225207-7225287 1.0000 80 chrIV:4214381-4214461 1.0000 80 chrIII:7544358-7544438 1.0000 80 chrI:1471110-1471190 1.0000 80 chrX:12912510-12912590 1.0000 80 chrX:3316398-3316478 1.0000 80 chrIII:7817600-7817680 1.0000 80 chrIII:5934205-5934285 1.0000 80 chrII:12378972-12379052 1.0000 80 chrI:5776019-5776099 1.0000 80 chrV:13999124-13999204 1.0000 80 chrI:2703286-2703366 1.0000 80 chrI:7709758-7709838 1.0000 80 chrV:15072858-15072938 1.0000 80 chrX:13638479-13638559 1.0000 80 chrIII:9080302-9080382 1.0000 80 chrIV:16496597-16496677 1.0000 80 chrIV:10174484-10174564 1.0000 80 chrIV:4022532-4022612 1.0000 80 chrV:18868644-18868724 1.0000 80 chrI:10499641-10499721 1.0000 80 chrII:6727083-6727163 1.0000 80 chrX:15151487-15151567 1.0000 80 chrV:1285914-1285994 1.0000 80 chrV:10721074-10721154 1.0000 80 chrX:12090907-12090987 1.0000 80 chrIV:9354327-9354407 1.0000 80 chrX:7917694-7917774 1.0000 80 chrI:6278609-6278689 1.0000 80 chrIV:9104467-9104547 1.0000 80 chrV:14507473-14507553 1.0000 80 chrV:10146900-10146980 1.0000 80 chrIII:8979740-8979820 1.0000 80 chrV:14804876-14804956 1.0000 80 chrIII:11201304-11201384 1.0000 80 chrIV:5581148-5581228 1.0000 80 chrI:3750567-3750647 1.0000 80 chrX:13851785-13851865 1.0000 80 chrII:10289013-10289093 1.0000 80 chrII:6141530-6141610 1.0000 80 chrII:5790487-5790567 1.0000 80 chrIII:9177980-9178060 1.0000 80 chrIV:5536056-5536136 1.0000 80 chrIII:10471058-10471138 1.0000 80 chrIV:14293322-14293402 1.0000 80 chrV:11535622-11535702 1.0000 80 chrIII:11207036-11207116 1.0000 80 chrIV:6833796-6833876 1.0000 80 chrIII:3778754-3778834 1.0000 80 chrIII:4222563-4222643 1.0000 80 chrX:2928221-2928301 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_egl-5/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/egl-5.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.29 C 0.208 G 0.204 T 0.299 Background letter frequencies (from file dataset with add-one prior applied): A 0.29 C 0.208 G 0.204 T 0.299 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTWATGGG MEME-1 width = 8 sites = 66 llr = 488 E-value = 2.2e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTWATGGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:4a::2: pos.-specific C :::::::: probability G :22::87a matrix T 984:a22: bits 2.3 * 2.1 * 1.8 * * 1.6 ** * Relative 1.4 *** * Entropy 1.1 ** *** * (10.7 bits) 0.9 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTATGGG consensus GA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWATGGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:5581148-5581228 23 3.88e-05 CGGCGCCAGT TTTATGGG AGTAGGTTGT chrV:13999124-13999204 2 3.88e-05 G TTTATGGG CCAAAAGATT chrI:5776019-5776099 33 3.88e-05 ACCAACTTAT TTAATGGG AAAGGACTCT chrII:8962445-8962525 22 3.88e-05 AAACATTTAG TTAATGGG ATCCACATTT chrV:11620235-11620315 71 3.88e-05 ACAATGTGGA TTTATGGG CA chrV:4509464-4509544 21 3.88e-05 AAAATCGTTT TTTATGGG CTCGTCAAAT chrX:6133297-6133377 20 3.88e-05 AATGCTTCTT TTTATGGG CCATAACCGA chrX:11547740-11547820 55 3.88e-05 ATGCATTAGT TTTATGGG CTTTTACGAC chrX:15580627-15580707 33 3.88e-05 GTTTCTCGAT TTTATGGG ATCCAATTCA chrI:11803720-11803800 38 3.88e-05 TAGGATAAGT TTTATGGG CCAATTTATG chrIII:822725-822805 43 3.88e-05 ATTGACCTGA TTTATGGG AGAAATGGAA chrII:5699064-5699144 46 3.88e-05 ATCAACATTT TTAATGGG GTCATTAAAT chrIII:459934-460014 35 3.88e-05 TTCATCACAT TTAATGGG ACACTACTCC chrV:7041176-7041256 44 3.88e-05 ACATGAGCAT TTTATGGG TTATTGGCTA chrX:2469700-2469780 73 5.22e-05 ATTGCCCATT TTGATGGG chrIV:10174484-10174564 70 7.86e-05 TGTAATGGGG TGAATGGG GCG chrIV:16482858-16482938 65 7.86e-05 CCATTAAAGA TGTATGGG GGGGAGCT chrII:7851572-7851652 11 7.86e-05 ATTTCTTGAT TGAATGGG AAAAGGTGTG chrIV:11574499-11574579 40 7.86e-05 CACAGAAAAA TGAATGGG CAATTTAACT chrI:3750567-3750647 32 1.45e-04 GCCGTAAACG TTTATTGG AAGTCGTGTA chrIV:740912-740992 5 1.45e-04 CTAA TTTATTGG CAATGAATTA chrII:4965739-4965819 68 1.45e-04 AAAAATGAGA TGGATGGG ACTTG chrIV:10812223-10812303 48 1.45e-04 CACTAAACTT TTTATTGG ACAATAAATC chrI:3154689-3154769 51 1.45e-04 TTACATGTGA TTTATTGG TATTTGATCT chrIII:8228518-8228598 11 1.45e-04 CGCATGATGC TTTATTGG TCTCGCAGCA chrV:6463820-6463900 23 1.45e-04 TTCTATCACA TTTATTGG GGGAACTTCC chrII:7211491-7211571 43 1.45e-04 TGAGACTTGA TTTATTGG TCACCTGTTG chrX:8764229-8764309 56 1.45e-04 TGATCTGCGT TTAATTGG TTTTTGATGG chrIII:9080302-9080382 53 2.00e-04 TGCTACTGAT TTAATGAG TCATTACAGA chrIV:4214381-4214461 43 2.00e-04 CTCCCACTTT TTAATGAG TAAATAGTGG chrIV:12817661-12817741 3 2.00e-04 AG TTTATGAG CTGTTATCTT chrV:14809099-14809179 32 2.00e-04 GACCTGCAAA TTAATGAG ATTTATTGCA chrV:8460969-8461049 46 2.00e-04 TCTTTTGTGT TTAATGAG TCGCAAATGG chrX:5189170-5189250 73 2.00e-04 TCTGATGTTT TTAATGAG chrI:10065424-10065504 25 2.00e-04 TGTGTGGATA TTTATGAG GAAAAAGAGA chrX:6894231-6894311 69 2.57e-04 TTTGATAAGA TTTATGTG GCTT chrI:5996786-5996866 70 2.57e-04 tgtatctgtc tttatgtg tat chrX:10907519-10907599 1 2.57e-04 . TTTATGTG GTCCAATACG chrV:7740830-7740910 29 2.57e-04 CGTCTGGGTT TTTATGTG TCGCATTTCA chrII:5299779-5299859 61 2.57e-04 AGTGCATGTT TTTATGTG CTTTTTCCGT chrIII:7819124-7819204 62 2.57e-04 TCCTGACAGT TTTATGTG ATCAGCAGAA chrV:10146900-10146980 42 2.76e-04 AAGATCTGGG TTGATTGG TGTAAGTGTG chrII:8318729-8318809 49 2.76e-04 ACACTTGTCG TTGATTGG TGTTTTTGTG chrV:11204611-11204691 41 2.76e-04 TTTTATTGCT TTGATTGG CTCCCAGGCT chrIII:3778754-3778834 58 3.33e-04 TTCCGACTGA TTGATGAG AATGATGCCA chrII:6017339-6017419 17 3.33e-04 GACAATGAAG ATAATGGG ATCCAATATC chrII:5702726-5702806 32 3.33e-04 AGAATGGATA ATAATGGG CCGAATAATT chrI:3889363-3889443 51 3.33e-04 AGAAATCGAT TTGATGAG TCATTTGGAA chrII:6482227-6482307 5 3.33e-04 GAGG TTGATGAG AGGCGGAGGA chrIII:7812667-7812747 41 3.33e-04 GAATTTGACG ATTATGGG ATCCGACGGC chrIV:11493033-11493113 17 3.33e-04 TATGGTCGAA ATAATGGG AGAGAGAGAG chrX:17428962-17429042 29 3.33e-04 CAATAACTGG ATAATGGG GCTCGTTAAT chrV:6797751-6797831 13 3.91e-04 ACGAGAACGT TGAATTGG AACGAGCGTT chrIII:7755529-7755609 62 3.91e-04 TAGATTAGGT TGAATTGG CGCGCGCGGA chrI:2678208-2678288 48 3.91e-04 ATGGATGAAG TGAATTGG TAAGCACCGA chrV:5966095-5966175 72 3.91e-04 AATGTGAAAT TGAATTGG T chrX:7522795-7522875 33 3.91e-04 TCAACAACAT TTGATGTG TTCTGCTGCT chrIV:1279126-1279206 3 4.29e-04 AG TGAATGAG AAGAGAAGGA chrV:20218828-20218908 19 4.29e-04 CCCCTTGTGT TGAATGAG GTGATAAAGT chrI:5502583-5502663 55 4.29e-04 GGGACCCAAT TGAATGAG GTGACACGTC chrII:5223047-5223127 53 4.42e-04 ACGGAAGGAC ATGATGGG GTGAAAGTGT chrX:4154939-4155019 54 4.42e-04 TCAATGACAA ATGATGGG AATTTTCGGT chrV:10721074-10721154 50 4.81e-04 ATTGTGTTAA TGAATGTG TTGTCACGTG chrI:11662892-11662972 53 4.81e-04 CAAgtgtttg tgtatgtg tttgattttt chrIV:3002996-3003076 54 7.10e-04 CTTGTTTTTT TTTATTTG GTCGAAATTG chrIII:11207036-11207116 32 8.83e-04 AAGTTTGTTG TTAGTGGG TACTGGTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWATGGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:5581148-5581228 3.9e-05 22_[+1]_50 chrV:13999124-13999204 3.9e-05 1_[+1]_71 chrI:5776019-5776099 3.9e-05 32_[+1]_40 chrII:8962445-8962525 3.9e-05 21_[+1]_51 chrV:11620235-11620315 3.9e-05 70_[+1]_2 chrV:4509464-4509544 3.9e-05 20_[+1]_52 chrX:6133297-6133377 3.9e-05 19_[+1]_53 chrX:11547740-11547820 3.9e-05 54_[+1]_18 chrX:15580627-15580707 3.9e-05 32_[+1]_40 chrI:11803720-11803800 3.9e-05 37_[+1]_35 chrIII:822725-822805 3.9e-05 42_[+1]_30 chrII:5699064-5699144 3.9e-05 45_[+1]_27 chrIII:459934-460014 3.9e-05 34_[+1]_38 chrV:7041176-7041256 3.9e-05 43_[+1]_29 chrX:2469700-2469780 5.2e-05 72_[+1] chrIV:10174484-10174564 7.9e-05 69_[+1]_3 chrIV:16482858-16482938 7.9e-05 64_[+1]_8 chrII:7851572-7851652 7.9e-05 10_[+1]_62 chrIV:11574499-11574579 7.9e-05 39_[+1]_33 chrI:3750567-3750647 0.00014 31_[+1]_41 chrIV:740912-740992 0.00014 4_[+1]_68 chrII:4965739-4965819 0.00014 67_[+1]_5 chrIV:10812223-10812303 0.00014 47_[+1]_25 chrI:3154689-3154769 0.00014 50_[+1]_22 chrIII:8228518-8228598 0.00014 10_[+1]_62 chrV:6463820-6463900 0.00014 22_[+1]_50 chrII:7211491-7211571 0.00014 42_[+1]_30 chrX:8764229-8764309 0.00014 55_[+1]_17 chrIII:9080302-9080382 0.0002 52_[+1]_20 chrIV:4214381-4214461 0.0002 42_[+1]_30 chrIV:12817661-12817741 0.0002 2_[+1]_70 chrV:14809099-14809179 0.0002 31_[+1]_41 chrV:8460969-8461049 0.0002 45_[+1]_27 chrX:5189170-5189250 0.0002 72_[+1] chrI:10065424-10065504 0.0002 24_[+1]_48 chrX:6894231-6894311 0.00026 68_[+1]_4 chrI:5996786-5996866 0.00026 69_[+1]_3 chrX:10907519-10907599 0.00026 [+1]_72 chrV:7740830-7740910 0.00026 28_[+1]_44 chrII:5299779-5299859 0.00026 60_[+1]_12 chrIII:7819124-7819204 0.00026 61_[+1]_11 chrV:10146900-10146980 0.00028 41_[+1]_31 chrII:8318729-8318809 0.00028 48_[+1]_24 chrV:11204611-11204691 0.00028 40_[+1]_32 chrIII:3778754-3778834 0.00033 57_[+1]_15 chrII:6017339-6017419 0.00033 16_[+1]_56 chrII:5702726-5702806 0.00033 31_[+1]_41 chrI:3889363-3889443 0.00033 50_[+1]_22 chrII:6482227-6482307 0.00033 4_[+1]_68 chrIII:7812667-7812747 0.00033 40_[+1]_32 chrIV:11493033-11493113 0.00033 16_[+1]_56 chrX:17428962-17429042 0.00033 28_[+1]_44 chrV:6797751-6797831 0.00039 12_[+1]_60 chrIII:7755529-7755609 0.00039 61_[+1]_11 chrI:2678208-2678288 0.00039 47_[+1]_25 chrV:5966095-5966175 0.00039 71_[+1]_1 chrX:7522795-7522875 0.00039 32_[+1]_40 chrIV:1279126-1279206 0.00043 2_[+1]_70 chrV:20218828-20218908 0.00043 18_[+1]_54 chrI:5502583-5502663 0.00043 54_[+1]_18 chrII:5223047-5223127 0.00044 52_[+1]_20 chrX:4154939-4155019 0.00044 53_[+1]_19 chrV:10721074-10721154 0.00048 49_[+1]_23 chrI:11662892-11662972 0.00048 52_[+1]_20 chrIV:3002996-3003076 0.00071 53_[+1]_19 chrIII:11207036-11207116 0.00088 31_[+1]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWATGGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTWATGGG width=8 seqs=66 chrIV:5581148-5581228 ( 23) TTTATGGG 1 chrV:13999124-13999204 ( 2) TTTATGGG 1 chrI:5776019-5776099 ( 33) TTAATGGG 1 chrII:8962445-8962525 ( 22) TTAATGGG 1 chrV:11620235-11620315 ( 71) TTTATGGG 1 chrV:4509464-4509544 ( 21) TTTATGGG 1 chrX:6133297-6133377 ( 20) TTTATGGG 1 chrX:11547740-11547820 ( 55) TTTATGGG 1 chrX:15580627-15580707 ( 33) TTTATGGG 1 chrI:11803720-11803800 ( 38) TTTATGGG 1 chrIII:822725-822805 ( 43) TTTATGGG 1 chrII:5699064-5699144 ( 46) TTAATGGG 1 chrIII:459934-460014 ( 35) TTAATGGG 1 chrV:7041176-7041256 ( 44) TTTATGGG 1 chrX:2469700-2469780 ( 73) TTGATGGG 1 chrIV:10174484-10174564 ( 70) TGAATGGG 1 chrIV:16482858-16482938 ( 65) TGTATGGG 1 chrII:7851572-7851652 ( 11) TGAATGGG 1 chrIV:11574499-11574579 ( 40) TGAATGGG 1 chrI:3750567-3750647 ( 32) TTTATTGG 1 chrIV:740912-740992 ( 5) TTTATTGG 1 chrII:4965739-4965819 ( 68) TGGATGGG 1 chrIV:10812223-10812303 ( 48) TTTATTGG 1 chrI:3154689-3154769 ( 51) TTTATTGG 1 chrIII:8228518-8228598 ( 11) TTTATTGG 1 chrV:6463820-6463900 ( 23) TTTATTGG 1 chrII:7211491-7211571 ( 43) TTTATTGG 1 chrX:8764229-8764309 ( 56) TTAATTGG 1 chrIII:9080302-9080382 ( 53) TTAATGAG 1 chrIV:4214381-4214461 ( 43) TTAATGAG 1 chrIV:12817661-12817741 ( 3) TTTATGAG 1 chrV:14809099-14809179 ( 32) TTAATGAG 1 chrV:8460969-8461049 ( 46) TTAATGAG 1 chrX:5189170-5189250 ( 73) TTAATGAG 1 chrI:10065424-10065504 ( 25) TTTATGAG 1 chrX:6894231-6894311 ( 69) TTTATGTG 1 chrI:5996786-5996866 ( 70) TTTATGTG 1 chrX:10907519-10907599 ( 1) TTTATGTG 1 chrV:7740830-7740910 ( 29) TTTATGTG 1 chrII:5299779-5299859 ( 61) TTTATGTG 1 chrIII:7819124-7819204 ( 62) TTTATGTG 1 chrV:10146900-10146980 ( 42) TTGATTGG 1 chrII:8318729-8318809 ( 49) TTGATTGG 1 chrV:11204611-11204691 ( 41) TTGATTGG 1 chrIII:3778754-3778834 ( 58) TTGATGAG 1 chrII:6017339-6017419 ( 17) ATAATGGG 1 chrII:5702726-5702806 ( 32) ATAATGGG 1 chrI:3889363-3889443 ( 51) TTGATGAG 1 chrII:6482227-6482307 ( 5) TTGATGAG 1 chrIII:7812667-7812747 ( 41) ATTATGGG 1 chrIV:11493033-11493113 ( 17) ATAATGGG 1 chrX:17428962-17429042 ( 29) ATAATGGG 1 chrV:6797751-6797831 ( 13) TGAATTGG 1 chrIII:7755529-7755609 ( 62) TGAATTGG 1 chrI:2678208-2678288 ( 48) TGAATTGG 1 chrV:5966095-5966175 ( 72) TGAATTGG 1 chrX:7522795-7522875 ( 33) TTGATGTG 1 chrIV:1279126-1279206 ( 3) TGAATGAG 1 chrV:20218828-20218908 ( 19) TGAATGAG 1 chrI:5502583-5502663 ( 55) TGAATGAG 1 chrII:5223047-5223127 ( 53) ATGATGGG 1 chrX:4154939-4155019 ( 54) ATGATGGG 1 chrV:10721074-10721154 ( 50) TGAATGTG 1 chrI:11662892-11662972 ( 53) TGTATGTG 1 chrIV:3002996-3003076 ( 54) TTTATTTG 1 chrIII:11207036-11207116 ( 32) TTAGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWATGGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.45311 E= 2.2e-008 -145 -1269 -1269 158 -1269 -1269 6 140 44 -1269 -29 56 176 -1269 -375 -1269 -1269 -1269 -1269 174 -1269 -1269 190 -30 -56 -1269 168 -98 -1269 -1269 230 -1269 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWATGGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 2.2e-008 0.106061 0.000000 0.000000 0.893939 0.000000 0.000000 0.212121 0.787879 0.393939 0.000000 0.166667 0.439394 0.984848 0.000000 0.015152 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.757576 0.242424 0.196970 0.000000 0.651515 0.151515 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWATGGG MEME-1 regular expression -------------------------------------------------------------------------------- T[TG][TA]AT[GT]GG -------------------------------------------------------------------------------- Time 5.16 secs. ******************************************************************************** ******************************************************************************** MOTIF TCYCATTH MEME-2 width = 8 sites = 68 llr = 486 E-value = 5.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCYCATTH MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::9::3 pos.-specific C 1a6a1:24 probability G 2::::::1 matrix T 7:4:1a82 bits 2.3 * 2.1 * * 1.8 * * * 1.6 * * * Relative 1.4 * * * Entropy 1.1 ****** (10.3 bits) 0.9 ****** 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TCCCATTC consensus G T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYCATTH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12912510-12912590 44 1.45e-05 GTCGCCCATT TCCCATTC CATCAATCAC chrIV:12424329-12424409 1 1.45e-05 . TCCCATTC TCGTTTTCCT chrX:7945514-7945594 71 1.45e-05 CCAACAGATG TCCCATTC GA chrII:14929706-14929786 22 1.45e-05 CATCACATCA TCCCATTC TTTTCCCCCT chrIII:3584824-3584904 27 1.45e-05 CTCCCCGTGT TCCCATTC CCATATAAAA chrX:7522795-7522875 17 1.45e-05 GTGTCGACTA TCCCATTC AACAACATTT chrI:8315355-8315435 56 3.47e-05 CAGCCATATT TCCCATTA TACTCATTGA chrX:3600025-3600105 16 3.47e-05 GTTTGCTCTT TCCCATTA TACCCCCGGG chrII:6141530-6141610 43 5.56e-05 tcttttcctc tctcattc ttttCACACG chrII:5305128-5305208 34 5.56e-05 CCAACATTTC TCTCATTC TCATTTTTCA chrX:14674030-14674110 45 1.15e-04 TATCCCAATG TCTCATTA TCACACTAAA chrIV:2941724-2941804 11 1.15e-04 ACCTCTGGCT TCTCATTA AATTGTTAAT chrIII:7824211-7824291 35 1.15e-04 GCTCTCAGTG TCTCATTA CGTCGTCTAA chrII:15148582-15148662 47 1.15e-04 CGATTCCATC TCCCATTT TTTTTTCAGT chrX:14496727-14496807 9 1.15e-04 TGTTCCAA TCCCATTT GATTGCAATC chrV:8552677-8552757 1 1.15e-04 . TCTCATTA AATTTCCAGC chrX:2795194-2795274 37 1.30e-04 CGTTTTCATT TCCCATTG TTAAACCACT chrIII:822725-822805 29 1.30e-04 TGTCCTCATG TCCCATTG ACCTGATTTA chrX:8764229-8764309 1 1.30e-04 . TCCCATTG CTGCGATGCG chrIII:459934-460014 61 1.30e-04 CCGTTTCTTC TCCCATTG GCCTATGGTA chrIII:10471058-10471138 16 1.64e-04 TCAATTTCAA GCCCATTA TTTCCACCTT chrIII:8979740-8979820 1 1.64e-04 . CCCCATTC ATCTCTTTCT chrV:14507473-14507553 50 1.64e-04 ACTACTCTCA GCCCATTA CTTTTTCTAT chrI:4940115-4940195 56 1.64e-04 TCTTGATTGA GCCCATTA AACAATTACG chrII:4576253-4576333 50 1.64e-04 CCTTCACTCA TCCCATCC ACTACTAAAC chrIII:7808331-7808411 73 1.64e-04 CTGATTTATT GCCCATTA chrX:11032610-11032690 41 1.64e-04 CTTGCCTACA GCCCATTA CTTTTTATGA chrV:13778027-13778107 35 1.64e-04 GACAAACAAA TCCCATCC ATCAATCACC chrX:6894231-6894311 50 2.08e-04 CTACCTATCT TCTCATTT GTTTGATAAG chrX:12545923-12546003 53 2.08e-04 TTTAAATGTT TCTCATTT CCCCATTCAT chrX:8954946-8955026 4 2.08e-04 ACT TCTCATTT TGTTATGCTT chrIII:7812667-7812747 23 2.08e-04 TGTCCCACCT TCTCATTT GAATTTGACG chrIV:16496597-16496677 63 2.28e-04 TTGCTCTCTG TCTCATTG CCATCTGATT chrIII:467177-467257 53 2.28e-04 ACCCTCAAGT TCTCATTG GAAACAAAGA chrIV:11716574-11716654 51 2.56e-04 TAGACATCCG CCCCATTA AATTAGGTGA chrX:12915866-12915946 12 2.56e-04 CTACACCACG CCCCATTA GAAATTTCGA chrIII:7814284-7814364 30 2.56e-04 TATTCCATAA CCCCATTA TTTTTATAAT chrI:6278609-6278689 28 3.20e-04 ACCCCATTTA CCTCATTC AAAACCGCAT chrV:15663041-15663121 37 3.20e-04 AAAACGAAGA GCCCATTT TCTGTGCTCA chrIII:564984-565064 15 3.20e-04 TCTCGCGCAC TCTCATCC CTCATTTATT chrII:5223047-5223127 10 3.20e-04 GGGAGATCG GCTCATTA ACACCAACAT chrX:13873840-13873920 42 3.20e-04 ATGAGATGAT GCTCATTA GTGTCAATTG chrX:11547740-11547820 3 3.20e-04 CT TCTCATCC ATCTTTTCCC chrV:11214710-11214790 44 3.20e-04 TCTCTCTTTG GCTCATTA ACTCTCTTTG chrX:1283460-1283540 23 3.20e-04 TCCCTTCATC GCTCATTA CCCTCATTTT chrX:12529668-12529748 29 3.20e-04 ACGTTTTTGA GCTCATTA AATGTGTGCC chrV:7041176-7041256 6 3.29e-04 GATTA GCCCATTG GATGTCTTGT chrIV:6833796-6833876 14 3.47e-04 TATCTATATG TCCCCTTC CCCGCAATTA chrIII:11454411-11454491 72 3.47e-04 GGTGTCCTAC TCCCCTTC A chrI:4431870-4431950 7 4.16e-04 TTATTT TCTCATCA ATTGACATTT chrI:12677787-12677867 37 4.16e-04 GCGTCTCTAC CCCCATTT CCAAATAGGT chrIII:8291445-8291525 15 4.16e-04 GTGTGATGAT TCCCATCT AAAGAATGTG chrII:5220820-5220900 18 4.16e-04 TTTCCCAGCA TCCCATCT TGTGGCTCAT chrIV:5536056-5536136 65 4.56e-04 GGGGAAATGA GCTCATTT TGAGATTC chrII:14672128-14672208 69 5.01e-04 AATATGTGAG CCCCATCC AATA chrIII:3778754-3778834 8 5.26e-04 TCCTGCT TCTCCTTC CAAATCGAAT chrX:12090907-12090987 3 5.26e-04 CC TCTCCTTC GAAACCCGAA chrV:14485079-14485159 1 5.26e-04 . TCTCCTTC TCGCTTTTCT chrI:1471110-1471190 22 5.83e-04 ACACAACAAA TCCCTTTC ATTTTTTGTT chrV:14569307-14569387 6 5.83e-04 CACCC TCTCATCT ATCCAATCTC chrX:4959601-4959681 40 5.83e-04 TCTTCCCGCT TCTCATCT CCCCCGCATT chrIV:11574499-11574579 8 5.83e-04 TCAATTC TCCCTTTC TCTCACTCAG chrIV:12550936-12551016 10 5.83e-04 CTACCAATT TCCCTTTC ATTCTGATAA chrV:18868644-18868724 72 6.11e-04 GCGCCAAATA CCTCATTG A chrV:11857868-11857948 41 6.28e-04 catcGTTACC CCCCATCA TAAAATCGTA chrX:16772492-16772572 42 6.98e-04 GCATCAGGCT GCTCATCA ACTATTTACG chrIII:11201304-11201384 57 7.57e-04 GCTGTTGCCC TCTCTTTC TGAAATGTGT chrX:9483913-9483993 71 1.39e-03 CTTATTCTTG TTCCATTC GT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYCATTH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12912510-12912590 1.5e-05 43_[+2]_29 chrIV:12424329-12424409 1.5e-05 [+2]_72 chrX:7945514-7945594 1.5e-05 70_[+2]_2 chrII:14929706-14929786 1.5e-05 21_[+2]_51 chrIII:3584824-3584904 1.5e-05 26_[+2]_46 chrX:7522795-7522875 1.5e-05 16_[+2]_56 chrI:8315355-8315435 3.5e-05 55_[+2]_17 chrX:3600025-3600105 3.5e-05 15_[+2]_57 chrII:6141530-6141610 5.6e-05 42_[+2]_30 chrII:5305128-5305208 5.6e-05 33_[+2]_39 chrX:14674030-14674110 0.00012 44_[+2]_28 chrIV:2941724-2941804 0.00012 10_[+2]_62 chrIII:7824211-7824291 0.00012 34_[+2]_38 chrII:15148582-15148662 0.00012 46_[+2]_26 chrX:14496727-14496807 0.00012 8_[+2]_64 chrV:8552677-8552757 0.00012 [+2]_72 chrX:2795194-2795274 0.00013 36_[+2]_36 chrIII:822725-822805 0.00013 28_[+2]_44 chrX:8764229-8764309 0.00013 [+2]_72 chrIII:459934-460014 0.00013 60_[+2]_12 chrIII:10471058-10471138 0.00016 15_[+2]_57 chrIII:8979740-8979820 0.00016 [+2]_72 chrV:14507473-14507553 0.00016 49_[+2]_23 chrI:4940115-4940195 0.00016 55_[+2]_17 chrII:4576253-4576333 0.00016 49_[+2]_23 chrIII:7808331-7808411 0.00016 72_[+2] chrX:11032610-11032690 0.00016 40_[+2]_32 chrV:13778027-13778107 0.00016 34_[+2]_38 chrX:6894231-6894311 0.00021 49_[+2]_23 chrX:12545923-12546003 0.00021 52_[+2]_20 chrX:8954946-8955026 0.00021 3_[+2]_69 chrIII:7812667-7812747 0.00021 22_[+2]_50 chrIV:16496597-16496677 0.00023 62_[+2]_10 chrIII:467177-467257 0.00023 52_[+2]_20 chrIV:11716574-11716654 0.00026 50_[+2]_22 chrX:12915866-12915946 0.00026 11_[+2]_61 chrIII:7814284-7814364 0.00026 29_[+2]_43 chrI:6278609-6278689 0.00032 27_[+2]_45 chrV:15663041-15663121 0.00032 36_[+2]_36 chrIII:564984-565064 0.00032 14_[+2]_58 chrII:5223047-5223127 0.00032 9_[+2]_63 chrX:13873840-13873920 0.00032 41_[+2]_31 chrX:11547740-11547820 0.00032 2_[+2]_70 chrV:11214710-11214790 0.00032 43_[+2]_29 chrX:1283460-1283540 0.00032 22_[+2]_50 chrX:12529668-12529748 0.00032 28_[+2]_44 chrV:7041176-7041256 0.00033 5_[+2]_67 chrIV:6833796-6833876 0.00035 13_[+2]_59 chrIII:11454411-11454491 0.00035 71_[+2]_1 chrI:4431870-4431950 0.00042 6_[+2]_66 chrI:12677787-12677867 0.00042 36_[+2]_36 chrIII:8291445-8291525 0.00042 14_[+2]_58 chrII:5220820-5220900 0.00042 17_[+2]_55 chrIV:5536056-5536136 0.00046 64_[+2]_8 chrII:14672128-14672208 0.0005 68_[+2]_4 chrIII:3778754-3778834 0.00053 7_[+2]_65 chrX:12090907-12090987 0.00053 2_[+2]_70 chrV:14485079-14485159 0.00053 [+2]_72 chrI:1471110-1471190 0.00058 21_[+2]_51 chrV:14569307-14569387 0.00058 5_[+2]_67 chrX:4959601-4959681 0.00058 39_[+2]_33 chrIV:11574499-11574579 0.00058 7_[+2]_65 chrIV:12550936-12551016 0.00058 9_[+2]_63 chrV:18868644-18868724 0.00061 71_[+2]_1 chrV:11857868-11857948 0.00063 40_[+2]_32 chrX:16772492-16772572 0.0007 41_[+2]_31 chrIII:11201304-11201384 0.00076 56_[+2]_16 chrX:9483913-9483993 0.0014 70_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYCATTH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCYCATTH width=8 seqs=68 chrX:12912510-12912590 ( 44) TCCCATTC 1 chrIV:12424329-12424409 ( 1) TCCCATTC 1 chrX:7945514-7945594 ( 71) TCCCATTC 1 chrII:14929706-14929786 ( 22) TCCCATTC 1 chrIII:3584824-3584904 ( 27) TCCCATTC 1 chrX:7522795-7522875 ( 17) TCCCATTC 1 chrI:8315355-8315435 ( 56) TCCCATTA 1 chrX:3600025-3600105 ( 16) TCCCATTA 1 chrII:6141530-6141610 ( 43) TCTCATTC 1 chrII:5305128-5305208 ( 34) TCTCATTC 1 chrX:14674030-14674110 ( 45) TCTCATTA 1 chrIV:2941724-2941804 ( 11) TCTCATTA 1 chrIII:7824211-7824291 ( 35) TCTCATTA 1 chrII:15148582-15148662 ( 47) TCCCATTT 1 chrX:14496727-14496807 ( 9) TCCCATTT 1 chrV:8552677-8552757 ( 1) TCTCATTA 1 chrX:2795194-2795274 ( 37) TCCCATTG 1 chrIII:822725-822805 ( 29) TCCCATTG 1 chrX:8764229-8764309 ( 1) TCCCATTG 1 chrIII:459934-460014 ( 61) TCCCATTG 1 chrIII:10471058-10471138 ( 16) GCCCATTA 1 chrIII:8979740-8979820 ( 1) CCCCATTC 1 chrV:14507473-14507553 ( 50) GCCCATTA 1 chrI:4940115-4940195 ( 56) GCCCATTA 1 chrII:4576253-4576333 ( 50) TCCCATCC 1 chrIII:7808331-7808411 ( 73) GCCCATTA 1 chrX:11032610-11032690 ( 41) GCCCATTA 1 chrV:13778027-13778107 ( 35) TCCCATCC 1 chrX:6894231-6894311 ( 50) TCTCATTT 1 chrX:12545923-12546003 ( 53) TCTCATTT 1 chrX:8954946-8955026 ( 4) TCTCATTT 1 chrIII:7812667-7812747 ( 23) TCTCATTT 1 chrIV:16496597-16496677 ( 63) TCTCATTG 1 chrIII:467177-467257 ( 53) TCTCATTG 1 chrIV:11716574-11716654 ( 51) CCCCATTA 1 chrX:12915866-12915946 ( 12) CCCCATTA 1 chrIII:7814284-7814364 ( 30) CCCCATTA 1 chrI:6278609-6278689 ( 28) CCTCATTC 1 chrV:15663041-15663121 ( 37) GCCCATTT 1 chrIII:564984-565064 ( 15) TCTCATCC 1 chrII:5223047-5223127 ( 10) GCTCATTA 1 chrX:13873840-13873920 ( 42) GCTCATTA 1 chrX:11547740-11547820 ( 3) TCTCATCC 1 chrV:11214710-11214790 ( 44) GCTCATTA 1 chrX:1283460-1283540 ( 23) GCTCATTA 1 chrX:12529668-12529748 ( 29) GCTCATTA 1 chrV:7041176-7041256 ( 6) GCCCATTG 1 chrIV:6833796-6833876 ( 14) TCCCCTTC 1 chrIII:11454411-11454491 ( 72) TCCCCTTC 1 chrI:4431870-4431950 ( 7) TCTCATCA 1 chrI:12677787-12677867 ( 37) CCCCATTT 1 chrIII:8291445-8291525 ( 15) TCCCATCT 1 chrII:5220820-5220900 ( 18) TCCCATCT 1 chrIV:5536056-5536136 ( 65) GCTCATTT 1 chrII:14672128-14672208 ( 69) CCCCATCC 1 chrIII:3778754-3778834 ( 8) TCTCCTTC 1 chrX:12090907-12090987 ( 3) TCTCCTTC 1 chrV:14485079-14485159 ( 1) TCTCCTTC 1 chrI:1471110-1471190 ( 22) TCCCTTTC 1 chrV:14569307-14569387 ( 6) TCTCATCT 1 chrX:4959601-4959681 ( 40) TCTCATCT 1 chrIV:11574499-11574579 ( 8) TCCCTTTC 1 chrIV:12550936-12551016 ( 10) TCCCTTTC 1 chrV:18868644-18868724 ( 72) CCTCATTG 1 chrV:11857868-11857948 ( 41) CCCCATCA 1 chrX:16772492-16772572 ( 42) GCTCATCA 1 chrIII:11201304-11201384 ( 57) TCTCTTTC 1 chrX:9483913-9483993 ( 71) TTCCATTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYCATTH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.85972 E= 5.2e-003 -1273 -65 2 115 -1273 224 -1273 -434 -1273 143 -1273 56 -1273 227 -1273 -1273 158 -150 -1273 -234 -1273 -1273 -1273 174 -1273 -24 -1273 146 16 82 -79 -64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYCATTH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 5.2e-003 0.000000 0.132353 0.205882 0.661765 0.000000 0.985294 0.000000 0.014706 0.000000 0.558824 0.000000 0.441176 0.000000 1.000000 0.000000 0.000000 0.867647 0.073529 0.000000 0.058824 0.000000 0.000000 0.000000 1.000000 0.000000 0.176471 0.000000 0.823529 0.323529 0.367647 0.117647 0.191176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYCATTH MEME-2 regular expression -------------------------------------------------------------------------------- [TG]C[CT]CATT[CA] -------------------------------------------------------------------------------- Time 10.69 secs. ******************************************************************************** ******************************************************************************** MOTIF VRRAGARR MEME-3 width = 8 sites = 57 llr = 422 E-value = 1.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif VRRAGARR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 376a:a47 pos.-specific C 3::::::: probability G 434:a:63 matrix T :::::::: bits 2.3 * 2.1 * 1.8 *** 1.6 *** Relative 1.4 *** Entropy 1.1 * ***** (10.7 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAAAGAGA consensus CGG AG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRRAGARR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:14507473-14507553 12 1.22e-05 TATGAGAAGA GAGAGAGA AACCGGCCGA chrI:2678208-2678288 71 1.22e-05 ACCGAGTGAG GAGAGAGA GC chrIV:11493033-11493113 26 1.22e-05 AATAATGGGA GAGAGAGA GGTACTACTG chrIV:5581148-5581228 2 2.97e-05 T GAAAGAGA TGGCGGCGCC chrX:10395056-10395136 41 2.97e-05 AGCATTGACC GAAAGAGA GTTCACCAAA chrV:12334581-12334661 54 2.97e-05 AGCCACATGA GAAAGAGA TAGAAACAAG chrIV:14293322-14293402 58 5.94e-05 CAATATGAAG GAGAGAGG AAAAGGTGAA chrIV:9354327-9354407 35 5.94e-05 AATGTTATCA GGGAGAGA TGAGAGAATT chrII:4965739-4965819 17 5.94e-05 GATGATCTTT GGGAGAGA AAACGAGAGG chrI:8315355-8315435 30 5.94e-05 AAGTGAGACG CAGAGAGA TAGAAATGCA chrV:983895-983975 14 5.94e-05 CTCGACCTCC GAGAGAGG GACGAGACTA chrII:7851572-7851652 61 5.94e-05 GAAGGTGACA CAGAGAGA AGTATTGCTC chrI:3154689-3154769 69 5.94e-05 TATTTGATCT GAGAGAGG TGCT chrIII:7820039-7820119 63 5.94e-05 CTCAGAGAGG CAGAGAGA CACACGGTGT chrIV:10174484-10174564 21 1.02e-04 GAGAGTAAGC GAAAGAGG ACGAGCGTTC chrII:5702726-5702806 17 1.02e-04 GCAATGAACT GGAAGAGA ATGGATAATA chrIV:7723557-7723637 7 1.02e-04 ATAAAA CAAAGAGA AGAACAACAT chrX:4628961-4629041 32 1.02e-04 TGTAAAGTGT CAAAGAGA GAACGCGGTT chrIII:467177-467257 65 1.02e-04 TCATTGGAAA CAAAGAGA GTATAGAA chrX:3156320-3156400 69 1.02e-04 TGATTCGGTC GGAAGAGA TTGA chrII:8962445-8962525 3 1.19e-04 TA GAGAGAAA TAAACATTTA chrV:1399567-1399647 4 1.67e-04 GCA CAGAGAGG TGATTACCCT chrII:5305128-5305208 58 1.67e-04 TTCATTTTTT GAAAGAAA AAACTGAGAG chrV:11535622-11535702 31 2.18e-04 ACACGGAAGG CGAAGAGA CGCAGCAATC chrX:13851785-13851865 22 2.18e-04 GAGAACTGAT AAGAGAGA AGGCGTCAAG chrII:6017339-6017419 66 2.18e-04 AAAGAGTACC CAAAGAGG CGTAAAT chrV:14093946-14094026 72 2.18e-04 CTGGAGCAGG CGAAGAGA C chrX:13873840-13873920 19 2.18e-04 ATTGACACTT CAAAGAGG TGCCGATGAG chrI:10039865-10039945 67 2.18e-04 TTCAATCGAA AAGAGAGA CAATAT chrIII:822725-822805 57 2.18e-04 TGGGAGAAAT GGAAGAGG GCTTGTTTCT chrX:15151487-15151567 59 2.43e-04 AAAACACATA AAAAGAGA AGCGCCGGAA chrV:14909189-14909269 28 2.43e-04 ACGTGAATGA AAAAGAGA TAAAAAAGAA chrIV:8091728-8091808 21 2.43e-04 AGTAGAAGAG AAAAGAGA AAGAAGGTCT chrI:10065424-10065504 35 2.43e-04 TTTATGAGGA AAAAGAGA AGAACCTGGC chrI:12677787-12677867 55 2.85e-04 CCAAATAGGT CAGAGAAA ACAAAAAGGC chrIV:740912-740992 60 3.52e-04 TCCCGGGGCT CGGAGAGG CAATTTGAAA chrV:11620235-11620315 37 3.52e-04 ataaggagaa gaaagaag gagcagtagg chrX:10160344-10160424 59 3.52e-04 TAATAAATGC GAAAGAAG AATTGTGGTG chrX:7974079-7974159 13 3.52e-04 ATTGTACATT CAAAGAAA CATCAACAGC chrII:6482227-6482307 49 3.52e-04 ATGTGTGGCC GAAAGAAG TGATATTGAG chrX:11364830-11364910 71 3.52e-04 AACGTTCGAA GGAAGAAA GT chrIII:7829093-7829173 52 4.53e-04 GACCTGCACG CGGAGAAA ACTCTACGCG chrII:5449445-5449525 23 4.53e-04 TCCAGAGATT GGGAGAAG ATAATAAAAT chrV:1239633-1239713 20 4.53e-04 ATCACTTTTT CGGAGAAA GGGCCTCCGT chrI:1471110-1471190 45 5.26e-04 TTGTTGTTTC GGAAGAAG CCCGTTGGTC chrX:7491831-7491911 27 5.26e-04 TGCATTTCAT GGAAGAAG AAGCCGCGCA chrX:4804061-4804141 72 5.26e-04 GAGCTGCACT CGAAGAAA C chrV:15072858-15072938 20 5.70e-04 GCAGCAGCAG AGGAGAGG GTACTTAAAA chrX:4421125-4421205 55 5.70e-04 GGCCCACTAA AAAAGAAA CTAGGCAGCC chrII:11794051-11794131 25 5.70e-04 TGTGTGTGTG AAAAGAAA AGCAATTTAG chrII:7981264-7981344 50 5.70e-04 TGCAAAAACA AAAAGAAA CCAATTTGTT chrX:13884456-13884536 57 5.70e-04 CAAATTGTGA AAAAGAAA AGAAGCAAGC chrIII:11201304-11201384 7 5.91e-04 CTGCAA CGGAGAAG AAGAAAACGA chrX:7917694-7917774 42 6.38e-04 GGTCGTTTTC AGGAGAAA AAAACGCAAG chrIV:1279126-1279206 11 6.38e-04 AGTGAATGAG AAGAGAAG GAGCCAGTCG chrV:3677408-3677488 49 6.38e-04 GTGTTGGTGG AGGAGAAA GGGGCCCCAT chrX:16772492-16772572 24 6.88e-04 AAAAGCAACA AAAAGAAG GCATCAGGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRRAGARR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:14507473-14507553 1.2e-05 11_[+3]_61 chrI:2678208-2678288 1.2e-05 70_[+3]_2 chrIV:11493033-11493113 1.2e-05 25_[+3]_47 chrIV:5581148-5581228 3e-05 1_[+3]_71 chrX:10395056-10395136 3e-05 40_[+3]_32 chrV:12334581-12334661 3e-05 53_[+3]_19 chrIV:14293322-14293402 5.9e-05 57_[+3]_15 chrIV:9354327-9354407 5.9e-05 34_[+3]_38 chrII:4965739-4965819 5.9e-05 16_[+3]_56 chrI:8315355-8315435 5.9e-05 29_[+3]_43 chrV:983895-983975 5.9e-05 13_[+3]_59 chrII:7851572-7851652 5.9e-05 60_[+3]_12 chrI:3154689-3154769 5.9e-05 68_[+3]_4 chrIII:7820039-7820119 5.9e-05 62_[+3]_10 chrIV:10174484-10174564 0.0001 20_[+3]_52 chrII:5702726-5702806 0.0001 16_[+3]_56 chrIV:7723557-7723637 0.0001 6_[+3]_66 chrX:4628961-4629041 0.0001 31_[+3]_41 chrIII:467177-467257 0.0001 64_[+3]_8 chrX:3156320-3156400 0.0001 68_[+3]_4 chrII:8962445-8962525 0.00012 2_[+3]_70 chrV:1399567-1399647 0.00017 3_[+3]_69 chrII:5305128-5305208 0.00017 57_[+3]_15 chrV:11535622-11535702 0.00022 30_[+3]_42 chrX:13851785-13851865 0.00022 21_[+3]_51 chrII:6017339-6017419 0.00022 65_[+3]_7 chrV:14093946-14094026 0.00022 71_[+3]_1 chrX:13873840-13873920 0.00022 18_[+3]_54 chrI:10039865-10039945 0.00022 66_[+3]_6 chrIII:822725-822805 0.00022 56_[+3]_16 chrX:15151487-15151567 0.00024 58_[+3]_14 chrV:14909189-14909269 0.00024 27_[+3]_45 chrIV:8091728-8091808 0.00024 20_[+3]_52 chrI:10065424-10065504 0.00024 34_[+3]_38 chrI:12677787-12677867 0.00029 54_[+3]_18 chrIV:740912-740992 0.00035 59_[+3]_13 chrV:11620235-11620315 0.00035 36_[+3]_36 chrX:10160344-10160424 0.00035 58_[+3]_14 chrX:7974079-7974159 0.00035 12_[+3]_60 chrII:6482227-6482307 0.00035 48_[+3]_24 chrX:11364830-11364910 0.00035 70_[+3]_2 chrIII:7829093-7829173 0.00045 51_[+3]_21 chrII:5449445-5449525 0.00045 22_[+3]_50 chrV:1239633-1239713 0.00045 19_[+3]_53 chrI:1471110-1471190 0.00053 44_[+3]_28 chrX:7491831-7491911 0.00053 26_[+3]_46 chrX:4804061-4804141 0.00053 71_[+3]_1 chrV:15072858-15072938 0.00057 19_[+3]_53 chrX:4421125-4421205 0.00057 54_[+3]_18 chrII:11794051-11794131 0.00057 24_[+3]_48 chrII:7981264-7981344 0.00057 49_[+3]_23 chrX:13884456-13884536 0.00057 56_[+3]_16 chrIII:11201304-11201384 0.00059 6_[+3]_66 chrX:7917694-7917774 0.00064 41_[+3]_31 chrIV:1279126-1279206 0.00064 10_[+3]_62 chrV:3677408-3677488 0.00064 48_[+3]_24 chrX:16772492-16772572 0.00069 23_[+3]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRRAGARR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VRRAGARR width=8 seqs=57 chrV:14507473-14507553 ( 12) GAGAGAGA 1 chrI:2678208-2678288 ( 71) GAGAGAGA 1 chrIV:11493033-11493113 ( 26) GAGAGAGA 1 chrIV:5581148-5581228 ( 2) GAAAGAGA 1 chrX:10395056-10395136 ( 41) GAAAGAGA 1 chrV:12334581-12334661 ( 54) GAAAGAGA 1 chrIV:14293322-14293402 ( 58) GAGAGAGG 1 chrIV:9354327-9354407 ( 35) GGGAGAGA 1 chrII:4965739-4965819 ( 17) GGGAGAGA 1 chrI:8315355-8315435 ( 30) CAGAGAGA 1 chrV:983895-983975 ( 14) GAGAGAGG 1 chrII:7851572-7851652 ( 61) CAGAGAGA 1 chrI:3154689-3154769 ( 69) GAGAGAGG 1 chrIII:7820039-7820119 ( 63) CAGAGAGA 1 chrIV:10174484-10174564 ( 21) GAAAGAGG 1 chrII:5702726-5702806 ( 17) GGAAGAGA 1 chrIV:7723557-7723637 ( 7) CAAAGAGA 1 chrX:4628961-4629041 ( 32) CAAAGAGA 1 chrIII:467177-467257 ( 65) CAAAGAGA 1 chrX:3156320-3156400 ( 69) GGAAGAGA 1 chrII:8962445-8962525 ( 3) GAGAGAAA 1 chrV:1399567-1399647 ( 4) CAGAGAGG 1 chrII:5305128-5305208 ( 58) GAAAGAAA 1 chrV:11535622-11535702 ( 31) CGAAGAGA 1 chrX:13851785-13851865 ( 22) AAGAGAGA 1 chrII:6017339-6017419 ( 66) CAAAGAGG 1 chrV:14093946-14094026 ( 72) CGAAGAGA 1 chrX:13873840-13873920 ( 19) CAAAGAGG 1 chrI:10039865-10039945 ( 67) AAGAGAGA 1 chrIII:822725-822805 ( 57) GGAAGAGG 1 chrX:15151487-15151567 ( 59) AAAAGAGA 1 chrV:14909189-14909269 ( 28) AAAAGAGA 1 chrIV:8091728-8091808 ( 21) AAAAGAGA 1 chrI:10065424-10065504 ( 35) AAAAGAGA 1 chrI:12677787-12677867 ( 55) CAGAGAAA 1 chrIV:740912-740992 ( 60) CGGAGAGG 1 chrV:11620235-11620315 ( 37) GAAAGAAG 1 chrX:10160344-10160424 ( 59) GAAAGAAG 1 chrX:7974079-7974159 ( 13) CAAAGAAA 1 chrII:6482227-6482307 ( 49) GAAAGAAG 1 chrX:11364830-11364910 ( 71) GGAAGAAA 1 chrIII:7829093-7829173 ( 52) CGGAGAAA 1 chrII:5449445-5449525 ( 23) GGGAGAAG 1 chrV:1239633-1239713 ( 20) CGGAGAAA 1 chrI:1471110-1471190 ( 45) GGAAGAAG 1 chrX:7491831-7491911 ( 27) GGAAGAAG 1 chrX:4804061-4804141 ( 72) CGAAGAAA 1 chrV:15072858-15072938 ( 20) AGGAGAGG 1 chrX:4421125-4421205 ( 55) AAAAGAAA 1 chrII:11794051-11794131 ( 25) AAAAGAAA 1 chrII:7981264-7981344 ( 50) AAAAGAAA 1 chrX:13884456-13884536 ( 57) AAAAGAAA 1 chrIII:11201304-11201384 ( 7) CGGAGAAG 1 chrX:7917694-7917774 ( 42) AGGAGAAA 1 chrIV:1279126-1279206 ( 11) AAGAGAAG 1 chrV:3677408-3677488 ( 49) AGGAGAAA 1 chrX:16772492-16772572 ( 24) AAAAGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRRAGARR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2866 E= 1.1e+000 -14 60 105 -1248 120 -1248 71 -1248 95 -1248 111 -1248 179 -1248 -1248 -1248 -1248 -1248 230 -1248 179 -1248 -1248 -1248 48 -1248 155 -1248 120 -1248 71 -1248 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRRAGARR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 1.1e+000 0.263158 0.315789 0.421053 0.000000 0.666667 0.000000 0.333333 0.000000 0.561404 0.000000 0.438596 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.403509 0.000000 0.596491 0.000000 0.666667 0.000000 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRRAGARR MEME-3 regular expression -------------------------------------------------------------------------------- [GCA][AG][AG]AGA[GA][AG] -------------------------------------------------------------------------------- Time 14.27 secs. ******************************************************************************** ******************************************************************************** MOTIF RAATGTGT MEME-4 width = 8 sites = 31 llr = 256 E-value = 3.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAATGTGT MEME-4 Description -------------------------------------------------------------------------------- Simplified A 5aa3:::3 pos.-specific C 1::::::: probability G 4:::a2a: matrix T :::7:8:7 bits 2.3 * * 2.1 * * 1.8 ** * * 1.6 ** * * Relative 1.4 ** * * Entropy 1.1 ** *** (11.9 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAATGTGT consensus G A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAATGTGT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:5536056-5536136 7 4.62e-05 ACTTTG AAATGTGT TTCTGCGTCT chrIII:11201304-11201384 67 4.62e-05 TCTCTTTCTG AAATGTGT CCTCCT chrX:11368943-11369023 67 4.62e-05 TTACTCAATT AAATGTGT ATCCAG chrII:8962445-8962525 48 4.62e-05 TTTCAGGGTA AAATGTGT TGGAGACATT chrIV:7816897-7816977 38 4.62e-05 TTTTTTTTGA AAATGTGT GGGAGGCAAC chrII:10979499-10979579 70 4.62e-05 TTGATTAGAC GAATGTGT TGT chrIV:2941724-2941804 39 4.62e-05 GGTGTTGTCA AAATGTGT TTCAGATTGG chrX:10130302-10130382 50 4.62e-05 TCAAAACGAA AAATGTGT TAAGACATTC chrIII:8291445-8291525 26 4.62e-05 CCCATCTAAA GAATGTGT ATCATCATGT chrII:4288001-4288081 54 4.62e-05 TTGCACTATC GAATGTGT ATCGTTAAAG chrX:1167413-1167493 55 4.62e-05 AAACACGAGG AAATGTGT ATTTGTGTGT chrIII:9177980-9178060 51 9.10e-05 AAACGACGAC AAAAGTGT CATTCATTGG chrV:1399567-1399647 65 9.10e-05 GGATTTGTTT GAAAGTGT TTCAAGAG chrII:5223047-5223127 63 9.10e-05 ATGATGGGGT GAAAGTGT TGAAATGATG chrI:8495824-8495904 66 9.10e-05 CGGCTTTTGG GAAAGTGT TGCGCAA chrV:6463820-6463900 66 9.10e-05 AATAAATTCG AAAAGTGT CAGGGCC chrI:5502583-5502663 11 9.10e-05 AGATCCAATT AAAAGTGT AATAACAAAT chrV:20218828-20218908 45 1.36e-04 GTAGGTAACA AAATGTGA GAAATGGGCT chrIII:213712-213792 66 1.36e-04 TATTATGAGA GAATGTGA GAAGTGG chrIII:8228518-8228598 46 1.36e-04 ATTTCGTAGA GAATGTGA GGTTTTAGGA chrV:5966095-5966175 61 1.36e-04 CCATTTTATG GAATGTGA AATTGAATTG chrIII:11454411-11454491 24 1.67e-04 AACATAAAAC GAATGGGT TCTTCTAATC chrX:12545923-12546003 28 1.67e-04 AACAAAAACA AAATGGGT TTTTTCCTTT chrIV:12550936-12551016 27 1.67e-04 CATTCTGATA AAATGGGT AAAACGATGA chrI:10065424-10065504 60 1.67e-04 GGCAGATATC AAATGGGT ACTTTGTAAC chrII:6482227-6482307 37 1.87e-04 ATTTCTGCTG CAATGTGT GGCCGAAAGA chrI:11105812-11105892 27 1.87e-04 TTTTCTCGAC CAATGTGT GCGGAATCAC chrII:10289013-10289093 19 2.30e-04 aagataaggt aaaagTGA TGAGGAATGG chrI:8315355-8315435 18 2.30e-04 GTGTTATGGG GAAAGTGA GACGCAGAGA chrIV:13902899-13902979 63 2.30e-04 AGATCATGTT GAAAGTGA AAAGTTAATG chrV:8460969-8461049 58 2.92e-04 AATGAGTCGC AAATGGGA AAACCGAGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAATGTGT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:5536056-5536136 4.6e-05 6_[+4]_66 chrIII:11201304-11201384 4.6e-05 66_[+4]_6 chrX:11368943-11369023 4.6e-05 66_[+4]_6 chrII:8962445-8962525 4.6e-05 47_[+4]_25 chrIV:7816897-7816977 4.6e-05 37_[+4]_35 chrII:10979499-10979579 4.6e-05 69_[+4]_3 chrIV:2941724-2941804 4.6e-05 38_[+4]_34 chrX:10130302-10130382 4.6e-05 49_[+4]_23 chrIII:8291445-8291525 4.6e-05 25_[+4]_47 chrII:4288001-4288081 4.6e-05 53_[+4]_19 chrX:1167413-1167493 4.6e-05 54_[+4]_18 chrIII:9177980-9178060 9.1e-05 50_[+4]_22 chrV:1399567-1399647 9.1e-05 64_[+4]_8 chrII:5223047-5223127 9.1e-05 62_[+4]_10 chrI:8495824-8495904 9.1e-05 65_[+4]_7 chrV:6463820-6463900 9.1e-05 65_[+4]_7 chrI:5502583-5502663 9.1e-05 10_[+4]_62 chrV:20218828-20218908 0.00014 44_[+4]_28 chrIII:213712-213792 0.00014 65_[+4]_7 chrIII:8228518-8228598 0.00014 45_[+4]_27 chrV:5966095-5966175 0.00014 60_[+4]_12 chrIII:11454411-11454491 0.00017 23_[+4]_49 chrX:12545923-12546003 0.00017 27_[+4]_45 chrIV:12550936-12551016 0.00017 26_[+4]_46 chrI:10065424-10065504 0.00017 59_[+4]_13 chrII:6482227-6482307 0.00019 36_[+4]_36 chrI:11105812-11105892 0.00019 26_[+4]_46 chrII:10289013-10289093 0.00023 18_[+4]_54 chrI:8315355-8315435 0.00023 17_[+4]_55 chrIV:13902899-13902979 0.00023 62_[+4]_10 chrV:8460969-8461049 0.00029 57_[+4]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAATGTGT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAATGTGT width=8 seqs=31 chrIV:5536056-5536136 ( 7) AAATGTGT 1 chrIII:11201304-11201384 ( 67) AAATGTGT 1 chrX:11368943-11369023 ( 67) AAATGTGT 1 chrII:8962445-8962525 ( 48) AAATGTGT 1 chrIV:7816897-7816977 ( 38) AAATGTGT 1 chrII:10979499-10979579 ( 70) GAATGTGT 1 chrIV:2941724-2941804 ( 39) AAATGTGT 1 chrX:10130302-10130382 ( 50) AAATGTGT 1 chrIII:8291445-8291525 ( 26) GAATGTGT 1 chrII:4288001-4288081 ( 54) GAATGTGT 1 chrX:1167413-1167493 ( 55) AAATGTGT 1 chrIII:9177980-9178060 ( 51) AAAAGTGT 1 chrV:1399567-1399647 ( 65) GAAAGTGT 1 chrII:5223047-5223127 ( 63) GAAAGTGT 1 chrI:8495824-8495904 ( 66) GAAAGTGT 1 chrV:6463820-6463900 ( 66) AAAAGTGT 1 chrI:5502583-5502663 ( 11) AAAAGTGT 1 chrV:20218828-20218908 ( 45) AAATGTGA 1 chrIII:213712-213792 ( 66) GAATGTGA 1 chrIII:8228518-8228598 ( 46) GAATGTGA 1 chrV:5966095-5966175 ( 61) GAATGTGA 1 chrIII:11454411-11454491 ( 24) GAATGGGT 1 chrX:12545923-12546003 ( 28) AAATGGGT 1 chrIV:12550936-12551016 ( 27) AAATGGGT 1 chrI:10065424-10065504 ( 60) AAATGGGT 1 chrII:6482227-6482307 ( 37) CAATGTGT 1 chrI:11105812-11105892 ( 27) CAATGTGT 1 chrII:10289013-10289093 ( 19) AAAAGTGA 1 chrI:8315355-8315435 ( 18) GAAAGTGA 1 chrIV:13902899-13902979 ( 63) GAAAGTGA 1 chrV:8460969-8461049 ( 58) AAATGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAATGTGT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.16214 E= 3.0e+002 92 -169 93 -1160 179 -1160 -1160 -1160 179 -1160 -1160 -1160 0 -1160 -1160 125 -1160 -1160 230 -1160 -1160 -1160 -34 149 -1160 -1160 230 -1160 -17 -1160 -1160 131 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAATGTGT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 3.0e+002 0.548387 0.064516 0.387097 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.290323 0.000000 0.000000 0.709677 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.161290 0.838710 0.000000 0.000000 1.000000 0.000000 0.258065 0.000000 0.000000 0.741935 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAATGTGT MEME-4 regular expression -------------------------------------------------------------------------------- [AG]AA[TA]GTG[TA] -------------------------------------------------------------------------------- Time 17.68 secs. ******************************************************************************** ******************************************************************************** MOTIF SYCATAAA MEME-5 width = 8 sites = 22 llr = 200 E-value = 7.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif SYCATAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :1:a:aaa pos.-specific C 64a::::: probability G 4::::::: matrix T :5::a::: bits 2.3 * 2.1 * 1.8 ****** 1.6 ****** Relative 1.4 * ****** Entropy 1.1 * ****** (13.1 bits) 0.9 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTCATAAA consensus GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCATAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:7544358-7544438 24 1.90e-05 TTTAATGGCA CCCATAAA TCTCAACTCT chrV:3677408-3677488 62 1.90e-05 AGAAAGGGGC CCCATAAA ATTCAGAATG chrX:12432848-12432928 36 1.90e-05 TTTCATTCAA CCCATAAA AGCCAGCCGT chrV:2802052-2802132 23 1.90e-05 AATTGAATGA CCCATAAA AAACTTCAGA chrI:10039865-10039945 34 1.90e-05 GAAGAAACGG CCCATAAA CAATTTCGAA chrI:6278609-6278689 7 4.64e-05 CATCTA CTCATAAA TTAACCCCAT chrII:6727083-6727163 36 4.64e-05 TGGATCATTG CTCATAAA TCAAGAGACA chrIV:10174484-10174564 46 4.64e-05 TTCAGATAAT CTCATAAA TCAGCATGTA chrI:7709758-7709838 58 4.64e-05 CCCAAACGAC CTCATAAA TTGACACTTT chrII:7851572-7851652 41 4.64e-05 TGTCTGCAAA CTCATAAA ATGAAGGTGA chrX:1167413-1167493 17 4.64e-05 ACTCTCGTAT CTCATAAA ACGTCAAAAA chrIII:7807106-7807186 58 4.64e-05 ATTCGTAATC CTCATAAA AATCGTGGAA chrIV:4022532-4022612 64 6.51e-05 GTTTTATGGA GCCATAAA ACGCGTATG chrX:7974079-7974159 68 6.51e-05 AGAAACGAAT GCCATAAA TCCAT chrII:14929706-14929786 71 6.51e-05 GCTTTCTTCG GCCATAAA AA chrIII:9091847-9091927 33 6.51e-05 CAATTGAAAG GCCATAAA TTGGTTGTTT chrX:4901744-4901824 14 9.19e-05 CATTTGCCAA GTCATAAA CTTTAAGCGG chrI:2706189-2706269 46 9.19e-05 GGGTCTCTAT GTCATAAA TCTCTTAAAT chrX:12187566-12187646 27 9.19e-05 GGTCGCAGCA GTCATAAA AACTCCACTT chrX:4804061-4804141 37 9.19e-05 CTAAACGATC GTCATAAA TTTTATGTTG chrII:10289013-10289093 59 1.18e-04 GATGACGACA CACATAAA AATCTGCAGA chrIII:11454411-11454491 8 1.18e-04 CGAAGAA CACATAAA CATAAAACGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCATAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:7544358-7544438 1.9e-05 23_[+5]_49 chrV:3677408-3677488 1.9e-05 61_[+5]_11 chrX:12432848-12432928 1.9e-05 35_[+5]_37 chrV:2802052-2802132 1.9e-05 22_[+5]_50 chrI:10039865-10039945 1.9e-05 33_[+5]_39 chrI:6278609-6278689 4.6e-05 6_[+5]_66 chrII:6727083-6727163 4.6e-05 35_[+5]_37 chrIV:10174484-10174564 4.6e-05 45_[+5]_27 chrI:7709758-7709838 4.6e-05 57_[+5]_15 chrII:7851572-7851652 4.6e-05 40_[+5]_32 chrX:1167413-1167493 4.6e-05 16_[+5]_56 chrIII:7807106-7807186 4.6e-05 57_[+5]_15 chrIV:4022532-4022612 6.5e-05 63_[+5]_9 chrX:7974079-7974159 6.5e-05 67_[+5]_5 chrII:14929706-14929786 6.5e-05 70_[+5]_2 chrIII:9091847-9091927 6.5e-05 32_[+5]_40 chrX:4901744-4901824 9.2e-05 13_[+5]_59 chrI:2706189-2706269 9.2e-05 45_[+5]_27 chrX:12187566-12187646 9.2e-05 26_[+5]_46 chrX:4804061-4804141 9.2e-05 36_[+5]_36 chrII:10289013-10289093 0.00012 58_[+5]_14 chrIII:11454411-11454491 0.00012 7_[+5]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCATAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SYCATAAA width=8 seqs=22 chrIII:7544358-7544438 ( 24) CCCATAAA 1 chrV:3677408-3677488 ( 62) CCCATAAA 1 chrX:12432848-12432928 ( 36) CCCATAAA 1 chrV:2802052-2802132 ( 23) CCCATAAA 1 chrI:10039865-10039945 ( 34) CCCATAAA 1 chrI:6278609-6278689 ( 7) CTCATAAA 1 chrII:6727083-6727163 ( 36) CTCATAAA 1 chrIV:10174484-10174564 ( 46) CTCATAAA 1 chrI:7709758-7709838 ( 58) CTCATAAA 1 chrII:7851572-7851652 ( 41) CTCATAAA 1 chrX:1167413-1167493 ( 17) CTCATAAA 1 chrIII:7807106-7807186 ( 58) CTCATAAA 1 chrIV:4022532-4022612 ( 64) GCCATAAA 1 chrX:7974079-7974159 ( 68) GCCATAAA 1 chrII:14929706-14929786 ( 71) GCCATAAA 1 chrIII:9091847-9091927 ( 33) GCCATAAA 1 chrX:4901744-4901824 ( 14) GTCATAAA 1 chrI:2706189-2706269 ( 46) GTCATAAA 1 chrX:12187566-12187646 ( 27) GTCATAAA 1 chrX:4804061-4804141 ( 37) GTCATAAA 1 chrII:10289013-10289093 ( 59) CACATAAA 1 chrIII:11454411-11454491 ( 8) CACATAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCATAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.24634 E= 7.6e+000 -1110 161 84 -1110 -167 98 -1110 74 -1110 227 -1110 -1110 179 -1110 -1110 -1110 -1110 -1110 -1110 174 179 -1110 -1110 -1110 179 -1110 -1110 -1110 179 -1110 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCATAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 7.6e+000 0.000000 0.636364 0.363636 0.000000 0.090909 0.409091 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCATAAA MEME-5 regular expression -------------------------------------------------------------------------------- [CG][TC]CATAAA -------------------------------------------------------------------------------- Time 21.07 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:7819124-7819204 2.10e-01 80 chrIII:7807106-7807186 1.28e-01 57_[+5(4.64e-05)]_15 chrIII:11448483-11448563 8.52e-01 80 chrIII:7809192-7809272 1.90e-01 80 chrIII:7805412-7805492 8.43e-01 80 chrIII:4603996-4604076 3.43e-01 80 chrX:8903079-8903159 4.68e-02 80 chrX:17428962-17429042 1.33e-01 80 chrX:9483913-9483993 6.10e-01 80 chrV:11204611-11204691 5.30e-01 80 chrX:12641087-12641167 1.55e-01 80 chrIV:11493033-11493113 4.81e-03 23_[+3(1.22e-05)]_49 chrX:12438393-12438473 6.63e-01 80 chrV:7041176-7041256 6.36e-03 43_[+1(3.88e-05)]_29 chrIV:11815127-11815207 3.97e-01 80 chrI:3955473-3955553 5.43e-01 80 chrX:12529668-12529748 2.42e-03 35_[+4(4.62e-05)]_37 chrIII:7806544-7806624 1.21e-01 80 chrV:8552677-8552757 3.13e-02 80 chrV:13778027-13778107 1.79e-01 80 chrI:10065424-10065504 3.87e-03 80 chrX:11032610-11032690 1.88e-01 80 chrX:1167413-1167493 4.50e-04 16_[+5(4.64e-05)]_30_[+4(4.62e-05)]_\ 18 chrIII:459934-460014 5.91e-03 34_[+1(3.88e-05)]_38 chrII:12658563-12658643 4.83e-01 80 chrI:5502583-5502663 7.17e-03 10_[+4(9.10e-05)]_62 chrV:12488147-12488227 9.39e-01 80 chrII:4288001-4288081 7.76e-02 53_[+4(4.62e-05)]_19 chrV:12334581-12334661 6.55e-02 53_[+3(2.97e-05)]_19 chrIII:7808331-7808411 9.79e-02 80 chrX:7522795-7522875 6.10e-03 16_[+2(1.45e-05)]_35_[+2(5.56e-05)]_\ 13 chrV:14616638-14616718 1.06e-01 80 chrIII:7820039-7820119 2.25e-02 62_[+3(5.94e-05)]_10 chrIII:7812667-7812747 3.18e-02 80 chrX:1283460-1283540 2.64e-01 80 chrIII:7814284-7814364 7.76e-02 80 chrX:5189170-5189250 5.45e-02 80 chrIV:12550936-12551016 4.00e-03 80 chrII:7850717-7850797 7.05e-03 80 chrX:8764229-8764309 7.29e-03 80 chrX:10022181-10022261 8.28e-01 80 chrIII:13489880-13489960 4.82e-02 80 chrII:5699064-5699144 4.48e-03 45_[+1(3.88e-05)]_27 chrIII:11202158-11202238 2.58e-01 80 chrIV:8847104-8847184 7.39e-01 80 chrX:9475059-9475139 5.79e-01 80 chrIV:13902899-13902979 5.83e-02 80 chrX:8954946-8955026 1.14e-01 80 chrI:4223232-4223312 2.19e-01 80 chrX:3600025-3600105 7.59e-02 15_[+2(3.47e-05)]_57 chrV:1239633-1239713 1.69e-01 80 chrIII:822725-822805 2.09e-04 42_[+1(3.88e-05)]_30 chrX:17430659-17430739 1.70e-01 80 chrX:13200471-13200551 5.56e-01 80 chrIV:3002996-3003076 2.42e-01 80 chrV:5966095-5966175 5.04e-02 80 chrIV:11574499-11574579 1.85e-03 39_[+1(7.86e-05)]_33 chrIV:11799350-11799430 3.91e-01 80 chrV:8460969-8461049 2.27e-02 80 chrII:5220820-5220900 6.12e-02 80 chrI:11803720-11803800 9.91e-02 37_[+1(3.88e-05)]_35 chrV:11214710-11214790 1.11e-01 80 chrIII:9091847-9091927 4.00e-02 32_[+5(6.51e-05)]_40 chrII:7211491-7211571 2.70e-03 80 chrI:11105812-11105892 8.48e-02 80 chrV:11210656-11210736 8.70e-01 80 chrX:11548896-11548976 3.41e-01 80 chrII:4576253-4576333 1.91e-01 80 chrIII:3584824-3584904 7.27e-03 26_[+2(1.45e-05)]_46 chrX:4804061-4804141 1.20e-02 36_[+5(9.19e-05)]_36 chrX:14496727-14496807 6.22e-02 80 chrIV:11787961-11788041 1.37e-01 80 chrV:6463820-6463900 2.47e-03 65_[+4(9.10e-05)]_7 chrIII:8228518-8228598 1.08e-02 80 chrX:15580627-15580707 3.75e-02 32_[+1(3.88e-05)]_40 chrX:2469700-2469780 9.88e-03 72_[+1(5.22e-05)] chrX:12915866-12915946 1.54e-02 80 chrIV:13692681-13692761 4.62e-02 80 chrIV:13948972-13949052 7.53e-01 80 chrII:5305128-5305208 9.76e-03 33_[+2(5.56e-05)]_39 chrX:2795194-2795274 1.41e-01 80 chrX:16772492-16772572 2.71e-02 80 chrX:13884456-13884536 2.63e-01 80 chrII:15148582-15148662 3.11e-02 80 chrX:11547740-11547820 9.43e-03 54_[+1(3.88e-05)]_18 chrIII:8291445-8291525 1.56e-03 25_[+4(4.62e-05)]_47 chrX:5202017-5202097 8.92e-01 80 chrI:10039865-10039945 3.08e-03 33_[+5(1.90e-05)]_39 chrII:14672128-14672208 4.99e-02 80 chrI:2678208-2678288 1.38e-03 70_[+3(1.22e-05)]_2 chrI:7043313-7043393 1.54e-01 80 chrI:3154689-3154769 1.50e-03 68_[+3(5.94e-05)]_4 chrX:3156320-3156400 7.96e-02 80 chrIV:10812223-10812303 2.09e-01 80 chrX:4154939-4155019 4.25e-01 80 chrX:10130302-10130382 9.82e-02 49_[+4(4.62e-05)]_23 chrIV:8091728-8091808 2.05e-01 80 chrIII:5686585-5686665 1.41e-01 80 chrI:6894009-6894089 3.68e-01 80 chrIII:467177-467257 3.28e-03 80 chrIV:9079481-9079561 5.52e-01 80 chrIII:7824211-7824291 1.09e-01 80 chrIV:11716574-11716654 2.88e-03 80 chrV:14485079-14485159 4.61e-01 80 chrX:11364830-11364910 2.62e-02 80 chrX:4959601-4959681 2.61e-01 80 chrII:8318729-8318809 1.46e-01 80 chrII:6482227-6482307 4.86e-03 80 chrV:2802052-2802132 6.80e-02 22_[+5(1.90e-05)]_50 chrIV:2941724-2941804 9.92e-04 38_[+4(4.62e-05)]_34 chrX:6977982-6978062 4.72e-01 80 chrX:13873840-13873920 1.01e-02 80 chrV:14985922-14986002 8.36e-02 80 chrI:12677787-12677867 4.05e-02 80 chrI:8495824-8495904 1.96e-01 65_[+4(9.10e-05)]_7 chrII:5449445-5449525 1.54e-01 80 chrIV:7722956-7723036 7.07e-01 80 chrII:9299867-9299947 5.32e-01 80 chrII:7851572-7851652 1.41e-05 10_[+1(7.86e-05)]_22_[+5(4.64e-05)]_\ 12_[+3(5.94e-05)]_12 chrII:7651446-7651526 8.93e-01 80 chrI:940374-940454 1.88e-01 80 chrII:14929706-14929786 5.73e-03 21_[+2(1.45e-05)]_41_[+5(6.51e-05)]_\ 2 chrII:5299779-5299859 1.55e-01 80 chrI:4940115-4940195 5.63e-02 80 chrI:7044870-7044950 3.79e-01 80 chrX:4628961-4629041 1.49e-02 80 chrX:3984909-3984989 4.36e-01 80 chrX:6133297-6133377 1.72e-02 19_[+1(3.88e-05)]_53 chrX:6036819-6036899 5.15e-01 80 chrV:7740830-7740910 6.16e-02 80 chrX:7974079-7974159 4.06e-02 67_[+5(6.51e-05)]_5 chrI:4431870-4431950 1.27e-01 80 chrII:7981264-7981344 4.68e-02 80 chrX:10907519-10907599 6.17e-02 80 chrX:2508697-2508777 5.20e-01 80 chrX:9842278-9842358 5.73e-01 80 chrX:12432848-12432928 1.53e-02 35_[+5(1.90e-05)]_37 chrX:14674030-14674110 2.97e-02 80 chrIII:213712-213792 1.56e-02 80 chrII:10979499-10979579 3.14e-03 69_[+4(4.62e-05)]_3 chrII:11794051-11794131 6.07e-02 80 chrV:14809099-14809179 1.23e-01 80 chrIV:12817661-12817741 6.52e-02 80 chrIII:7811119-7811199 9.01e-01 80 chrII:5223047-5223127 3.57e-04 62_[+4(9.10e-05)]_10 chrII:8313751-8313831 3.93e-01 80 chrX:15105238-15105318 3.99e-01 80 chrV:983895-983975 4.51e-02 13_[+3(5.94e-05)]_59 chrX:4421125-4421205 2.64e-01 80 chrI:3889363-3889443 2.37e-01 80 chrIII:3590548-3590628 3.25e-01 80 chrV:20218828-20218908 1.09e-03 80 chrV:14569307-14569387 5.18e-02 80 chrV:1399567-1399647 2.07e-03 64_[+4(9.10e-05)]_8 chrV:4509464-4509544 1.37e-02 20_[+1(3.88e-05)]_52 chrX:7945514-7945594 1.56e-01 70_[+2(1.45e-05)]_2 chrX:12187566-12187646 5.28e-02 26_[+5(9.19e-05)]_46 chrIII:3437314-3437394 8.26e-02 80 chrIV:7723557-7723637 8.62e-02 80 chrI:2706189-2706269 2.62e-01 45_[+5(9.19e-05)]_27 chrX:12545923-12546003 6.60e-03 80 chrII:5050096-5050176 9.35e-01 80 chrV:3677408-3677488 7.25e-04 61_[+5(1.90e-05)]_11 chrV:10201659-10201739 1.95e-01 80 chrII:5702726-5702806 1.74e-02 80 chrX:10395056-10395136 1.19e-02 40_[+3(2.97e-05)]_32 chrIII:11454411-11454491 6.65e-04 80 chrX:9069275-9069355 2.21e-01 80 chrI:5996786-5996866 9.01e-03 80 chrIV:7816897-7816977 5.60e-02 37_[+4(4.62e-05)]_35 chrII:6176326-6176406 1.27e-01 80 chrIII:7829093-7829173 2.79e-01 80 chrX:6894231-6894311 2.33e-02 80 chrX:3526574-3526654 3.90e-01 80 chrII:6642794-6642874 3.22e-02 80 chrX:10160344-10160424 2.92e-02 80 chrIII:7755529-7755609 7.01e-02 80 chrX:7491831-7491911 1.68e-01 80 chrX:4901744-4901824 7.10e-03 13_[+5(9.19e-05)]_59 chrV:14093946-14094026 9.75e-02 80 chrIV:1279126-1279206 7.91e-03 80 chrI:8315355-8315435 7.13e-05 29_[+3(5.94e-05)]_18_[+2(3.47e-05)]_\ 17 chrV:11857868-11857948 1.38e-02 80 chrV:6797751-6797831 6.01e-02 80 chrII:6017339-6017419 2.00e-02 80 chrI:11662892-11662972 8.30e-02 80 chrV:11620235-11620315 6.65e-03 70_[+1(3.88e-05)]_2 chrIV:16482858-16482938 1.76e-02 64_[+1(7.86e-05)]_8 chrIII:564984-565064 3.60e-02 80 chrII:8962445-8962525 4.38e-05 21_[+1(3.88e-05)]_18_[+4(4.62e-05)]_\ 25 chrX:15014088-15014168 2.53e-01 80 chrV:15663041-15663121 4.51e-02 80 chrIV:12424329-12424409 5.96e-03 [+2(1.45e-05)]_72 chrII:4965739-4965819 1.48e-03 16_[+3(5.94e-05)]_56 chrIV:7659684-7659764 8.24e-01 80 chrX:6551179-6551259 7.86e-01 80 chrIV:740912-740992 3.50e-02 80 chrX:11368943-11369023 5.91e-02 66_[+4(4.62e-05)]_6 chrV:14909189-14909269 3.30e-02 80 chrX:7225207-7225287 5.67e-01 80 chrIV:4214381-4214461 1.66e-01 80 chrIII:7544358-7544438 4.46e-03 23_[+5(1.90e-05)]_49 chrI:1471110-1471190 9.20e-02 80 chrX:12912510-12912590 5.89e-02 43_[+2(1.45e-05)]_29 chrX:3316398-3316478 8.69e-01 80 chrIII:7817600-7817680 5.13e-01 80 chrIII:5934205-5934285 6.23e-01 80 chrII:12378972-12379052 5.90e-01 80 chrI:5776019-5776099 1.41e-02 32_[+1(3.88e-05)]_40 chrV:13999124-13999204 6.92e-02 1_[+1(3.88e-05)]_71 chrI:2703286-2703366 6.99e-01 80 chrI:7709758-7709838 5.09e-02 57_[+5(4.64e-05)]_15 chrV:15072858-15072938 1.04e-01 80 chrX:13638479-13638559 3.99e-01 80 chrIII:9080302-9080382 2.11e-01 80 chrIV:16496597-16496677 2.98e-01 80 chrIV:10174484-10174564 4.09e-05 45_[+5(4.64e-05)]_16_[+1(7.86e-05)]_\ 3 chrIV:4022532-4022612 4.51e-02 63_[+5(6.51e-05)]_9 chrV:18868644-18868724 2.63e-01 80 chrI:10499641-10499721 2.51e-01 80 chrII:6727083-6727163 2.66e-02 35_[+5(4.64e-05)]_37 chrX:15151487-15151567 1.45e-02 80 chrV:1285914-1285994 4.90e-01 80 chrV:10721074-10721154 4.74e-02 50_[+4(4.62e-05)]_22 chrX:12090907-12090987 6.13e-01 80 chrIV:9354327-9354407 8.35e-02 34_[+3(5.94e-05)]_38 chrX:7917694-7917774 4.09e-01 80 chrI:6278609-6278689 2.33e-02 6_[+5(4.64e-05)]_66 chrIV:9104467-9104547 1.27e-01 80 chrV:14507473-14507553 3.49e-03 9_[+3(1.22e-05)]_63 chrV:10146900-10146980 9.71e-02 80 chrIII:8979740-8979820 2.29e-01 80 chrV:14804876-14804956 3.50e-02 80 chrIII:11201304-11201384 5.59e-03 66_[+4(4.62e-05)]_6 chrIV:5581148-5581228 1.96e-03 1_[+3(2.97e-05)]_13_[+1(3.88e-05)]_\ 50 chrI:3750567-3750647 1.83e-02 80 chrX:13851785-13851865 1.22e-01 80 chrII:10289013-10289093 1.33e-02 80 chrII:6141530-6141610 1.70e-01 42_[+2(5.56e-05)]_30 chrII:5790487-5790567 3.28e-01 80 chrIII:9177980-9178060 1.22e-02 50_[+4(9.10e-05)]_22 chrIV:5536056-5536136 1.72e-02 6_[+4(4.62e-05)]_66 chrIII:10471058-10471138 5.94e-02 80 chrIV:14293322-14293402 5.87e-02 57_[+3(5.94e-05)]_15 chrV:11535622-11535702 3.44e-01 80 chrIII:11207036-11207116 3.26e-01 80 chrIV:6833796-6833876 3.91e-02 80 chrIII:3778754-3778834 9.85e-02 80 chrIII:4222563-4222643 3.83e-01 80 chrX:2928221-2928301 2.24e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************