******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/egl-27.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:6836386-6836466 1.0000 80 chrIV:3899976-3900056 1.0000 80 chrM:13149-13229 1.0000 80 chrX:7990443-7990523 1.0000 80 chrV:10729786-10729866 1.0000 80 chrIII:154360-154440 1.0000 80 chrII:6838422-6838502 1.0000 80 chrII:6849476-6849556 1.0000 80 chrX:3932894-3932974 1.0000 80 chrII:915381-915461 1.0000 80 chrV:9163126-9163206 1.0000 80 chrV:11802562-11802642 1.0000 80 chrV:6994109-6994189 1.0000 80 chrX:15274214-15274294 1.0000 80 chrIV:13919379-13919459 1.0000 80 chrII:6026803-6026883 1.0000 80 chrM:1839-1919 1.0000 80 chrX:11447888-11447968 1.0000 80 chrV:8768661-8768741 1.0000 80 chrV:18346209-18346289 1.0000 80 chrII:2378724-2378804 1.0000 80 chrX:12518014-12518094 1.0000 80 chrV:8445834-8445914 1.0000 80 chrII:6841187-6841267 1.0000 80 chrV:15354851-15354931 1.0000 80 chrV:13202504-13202584 1.0000 80 chrIII:313031-313111 1.0000 80 chrIV:3875370-3875450 1.0000 80 chrX:15340121-15340201 1.0000 80 chrIV:14594384-14594464 1.0000 80 chrX:15360744-15360824 1.0000 80 chrV:5823130-5823210 1.0000 80 chrII:1103858-1103938 1.0000 80 chrII:13469299-13469379 1.0000 80 chrIII:6159197-6159277 1.0000 80 chrV:532157-532237 1.0000 80 chrV:3262369-3262449 1.0000 80 chrX:6743008-6743088 1.0000 80 chrIII:7116832-7116912 1.0000 80 chrII:12625822-12625902 1.0000 80 chrII:4089367-4089447 1.0000 80 chrV:8073315-8073395 1.0000 80 chrII:900855-900935 1.0000 80 chrM:8470-8550 1.0000 80 chrV:381369-381449 1.0000 80 chrX:13356608-13356688 1.0000 80 chrIV:8463244-8463324 1.0000 80 chrII:10549434-10549514 1.0000 80 chrIV:8133690-8133770 1.0000 80 chrV:6614539-6614619 1.0000 80 chrX:6664173-6664253 1.0000 80 chrIII:8749685-8749765 1.0000 80 chrII:3786690-3786770 1.0000 80 chrIV:6099930-6100010 1.0000 80 chrII:6842754-6842834 1.0000 80 chrV:5763985-5764065 1.0000 80 chrV:5065147-5065227 1.0000 80 chrII:6848174-6848254 1.0000 80 chrIII:7120652-7120732 1.0000 80 chrIV:5607496-5607576 1.0000 80 chrIII:7166958-7167038 1.0000 80 chrV:15880965-15881045 1.0000 80 chrX:3829795-3829875 1.0000 80 chrV:5012367-5012447 1.0000 80 chrX:3832259-3832339 1.0000 80 chrII:1851880-1851960 1.0000 80 chrIV:7550003-7550083 1.0000 80 chrIV:8793432-8793512 1.0000 80 chrV:8905793-8905873 1.0000 80 chrIV:8534400-8534480 1.0000 80 chrX:13355150-13355230 1.0000 80 chrII:6843804-6843884 1.0000 80 chrM:5962-6042 1.0000 80 chrI:7480266-7480346 1.0000 80 chrV:11543706-11543786 1.0000 80 chrI:3672749-3672829 1.0000 80 chrV:8201367-8201447 1.0000 80 chrX:10678176-10678256 1.0000 80 chrIII:5938162-5938242 1.0000 80 chrI:2587639-2587719 1.0000 80 chrIV:13028701-13028781 1.0000 80 chrIV:16024264-16024344 1.0000 80 chrI:7477022-7477102 1.0000 80 chrV:10855564-10855644 1.0000 80 chrV:17721924-17722004 1.0000 80 chrIII:1279311-1279391 1.0000 80 chrIII:7141355-7141435 1.0000 80 chrX:1395948-1396028 1.0000 80 chrI:3822830-3822910 1.0000 80 chrX:10772241-10772321 1.0000 80 chrII:8818477-8818557 1.0000 80 chrM:8234-8314 1.0000 80 chrX:2432650-2432730 1.0000 80 chrX:8475381-8475461 1.0000 80 chrIV:8530770-8530850 1.0000 80 chrX:15276817-15276897 1.0000 80 chrIV:5764492-5764572 1.0000 80 chrI:3682085-3682165 1.0000 80 chrX:12844314-12844394 1.0000 80 chrIV:7049843-7049923 1.0000 80 chrX:6736597-6736677 1.0000 80 chrII:11617886-11617966 1.0000 80 chrII:13462187-13462267 1.0000 80 chrIV:5778500-5778580 1.0000 80 chrX:9225351-9225431 1.0000 80 chrII:12185825-12185905 1.0000 80 chrV:619180-619260 1.0000 80 chrX:11462210-11462290 1.0000 80 chrV:12637384-12637464 1.0000 80 chrI:9883743-9883823 1.0000 80 chrIII:13694247-13694327 1.0000 80 chrV:6275341-6275421 1.0000 80 chrII:11486971-11487051 1.0000 80 chrX:8623965-8624045 1.0000 80 chrII:11928954-11929034 1.0000 80 chrIII:5812772-5812852 1.0000 80 chrX:14500622-14500702 1.0000 80 chrIII:5939795-5939875 1.0000 80 chrIV:5593973-5594053 1.0000 80 chrV:13371430-13371510 1.0000 80 chrX:14506093-14506173 1.0000 80 chrX:13358731-13358811 1.0000 80 chrII:12089742-12089822 1.0000 80 chrX:2569163-2569243 1.0000 80 chrX:1456868-1456948 1.0000 80 chrIII:6895282-6895362 1.0000 80 chrX:12872410-12872490 1.0000 80 chrV:10717395-10717475 1.0000 80 chrM:2909-2989 1.0000 80 chrM:7095-7175 1.0000 80 chrX:13360089-13360169 1.0000 80 chrI:10585471-10585551 1.0000 80 chrX:1478107-1478187 1.0000 80 chrV:6276292-6276372 1.0000 80 chrIV:10782135-10782215 1.0000 80 chrV:5393238-5393318 1.0000 80 chrIV:9526156-9526236 1.0000 80 chrV:9165276-9165356 1.0000 80 chrIV:664252-664332 1.0000 80 chrIV:11915852-11915932 1.0000 80 chrM:9088-9168 1.0000 80 chrV:11532351-11532431 1.0000 80 chrX:12878070-12878150 1.0000 80 chrX:6338626-6338706 1.0000 80 chrX:9337924-9338004 1.0000 80 chrM:2070-2150 1.0000 80 chrV:12300396-12300476 1.0000 80 chrII:9975131-9975211 1.0000 80 chrV:20424393-20424473 1.0000 80 chrIV:3234421-3234501 1.0000 80 chrII:15205510-15205590 1.0000 80 chrV:5768378-5768458 1.0000 80 chrX:12515797-12515877 1.0000 80 chrV:11572997-11573077 1.0000 80 chrI:5311877-5311957 1.0000 80 chrIII:8733384-8733464 1.0000 80 chrI:9097737-9097817 1.0000 80 chrV:11799402-11799482 1.0000 80 chrV:10002916-10002996 1.0000 80 chrII:6827536-6827616 1.0000 80 chrX:11710463-11710543 1.0000 80 chrII:9937711-9937791 1.0000 80 chrIII:7153940-7154020 1.0000 80 chrX:10576654-10576734 1.0000 80 chrIV:8527707-8527787 1.0000 80 chrII:6926648-6926728 1.0000 80 chrII:3897924-3898004 1.0000 80 chrIII:4284866-4284946 1.0000 80 chrX:8029269-8029349 1.0000 80 chrIV:6083834-6083914 1.0000 80 chrIII:5421544-5421624 1.0000 80 chrV:9740994-9741074 1.0000 80 chrV:6876964-6877044 1.0000 80 chrX:6750348-6750428 1.0000 80 chrX:14602801-14602881 1.0000 80 chrIV:3612100-3612180 1.0000 80 chrX:8156589-8156669 1.0000 80 chrIV:17472310-17472390 1.0000 80 chrIV:4028343-4028423 1.0000 80 chrV:10871512-10871592 1.0000 80 chrII:8742133-8742213 1.0000 80 chrII:11619338-11619418 1.0000 80 chrIV:5100258-5100338 1.0000 80 chrI:3710741-3710821 1.0000 80 chrII:5330300-5330380 1.0000 80 chrIII:5225048-5225128 1.0000 80 chrIII:13059505-13059585 1.0000 80 chrV:6246677-6246757 1.0000 80 chrV:7415964-7416044 1.0000 80 chrV:2672794-2672874 1.0000 80 chrIV:11092774-11092854 1.0000 80 chrII:6822548-6822628 1.0000 80 chrIII:11689446-11689526 1.0000 80 chrI:6459652-6459732 1.0000 80 chrX:12425553-12425633 1.0000 80 chrIII:1926601-1926681 1.0000 80 chrIII:7179830-7179910 1.0000 80 chrII:7777510-7777590 1.0000 80 chrIII:12583638-12583718 1.0000 80 chrIII:7189906-7189986 1.0000 80 chrII:7529261-7529341 1.0000 80 chrX:12500991-12501071 1.0000 80 chrIII:13763497-13763577 1.0000 80 chrV:6229499-6229579 1.0000 80 chrX:15607679-15607759 1.0000 80 chrX:6042204-6042284 1.0000 80 chrV:5991641-5991721 1.0000 80 chrI:4254044-4254124 1.0000 80 chrIII:2471981-2472061 1.0000 80 chrV:15071393-15071473 1.0000 80 chrIV:9196937-9197017 1.0000 80 chrX:7306591-7306671 1.0000 80 chrIII:2876134-2876214 1.0000 80 chrI:8869217-8869297 1.0000 80 chrIV:11956501-11956581 1.0000 80 chrX:14508103-14508183 1.0000 80 chrV:19527689-19527769 1.0000 80 chrIII:4015392-4015472 1.0000 80 chrI:3740496-3740576 1.0000 80 chrIV:9803722-9803802 1.0000 80 chrX:7181831-7181911 1.0000 80 chrIV:5656118-5656198 1.0000 80 chrV:13130601-13130681 1.0000 80 chrX:15281549-15281629 1.0000 80 chrIII:7162433-7162513 1.0000 80 chrIII:13061264-13061344 1.0000 80 chrI:6838191-6838271 1.0000 80 chrM:4692-4772 1.0000 80 chrV:6214005-6214085 1.0000 80 chrI:10769843-10769923 1.0000 80 chrX:15607123-15607203 1.0000 80 chrV:10858568-10858648 1.0000 80 chrX:13105100-13105180 1.0000 80 chrV:19529353-19529433 1.0000 80 chrX:5696317-5696397 1.0000 80 chrIII:11185697-11185777 1.0000 80 chrX:8546209-8546289 1.0000 80 chrII:9113028-9113108 1.0000 80 chrX:14508914-14508994 1.0000 80 chrX:14297325-14297405 1.0000 80 chrIII:7208060-7208140 1.0000 80 chrIV:11433902-11433982 1.0000 80 chrX:11339522-11339602 1.0000 80 chrI:7056844-7056924 1.0000 80 chrII:10851142-10851222 1.0000 80 chrII:15263147-15263227 1.0000 80 chrV:11533131-11533211 1.0000 80 chrM:2283-2363 1.0000 80 chrV:14505803-14505883 1.0000 80 chrIV:6481238-6481318 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_egl-27/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/egl-27.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.29 C 0.213 G 0.215 T 0.283 Background letter frequencies (from file dataset with add-one prior applied): A 0.29 C 0.213 G 0.215 T 0.283 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GARAGARA MEME-1 width = 8 sites = 66 llr = 507 E-value = 7.5e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARAGARA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2a4a2a5a pos.-specific C ::2::::: probability G 8:5:8:5: matrix T :::::::: bits 2.2 2.0 1.8 * * * 1.6 * * * * Relative 1.3 ** *** * Entropy 1.1 ** *** * (11.1 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAAA consensus A A A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGARA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:3740496-3740576 42 1.51e-05 GGCAGAGAGA GAGAGAGA CACGTTGAAC chrI:6459652-6459732 52 1.51e-05 cggagaaaga gagagaga gCGCGCGTTG chrIII:11689446-11689526 32 1.51e-05 GGGAGATAGA GAGAGAGA TAGTTGTGTG chrV:11532351-11532431 37 1.51e-05 ATGACTGTGG GAGAGAGA GGGTGGCAAG chrV:5393238-5393318 15 1.51e-05 GAGCATAAGA GAGAGAGA AAGATCGGAT chrI:10585471-10585551 14 1.51e-05 AGGTGAACAT gagagaga cagtgagagg chrI:7477022-7477102 17 1.51e-05 ATAagagaga gagagaga gaaagatggt chrI:2587639-2587719 1 1.51e-05 . GAGAGAGA CGCAGACAGC chrIII:7116832-7116912 37 1.51e-05 GAGTTGATGA GAGAGAGA GACAGACATA chrII:9113028-9113108 48 3.55e-05 CTGGAAAATA GAGAGAAA GAGATAGAGA chrX:8546209-8546289 39 3.55e-05 ATTTCACGAA GAGAGAAA GAGGAAAGAG chrX:6042204-6042284 42 3.55e-05 AGAAGAAGTT GAGAGAAA AACGCGACAA chrII:3897924-3898004 8 3.55e-05 GCGTAAT GAGAGAAA TGTGTCTAAA chrV:10002916-10002996 16 3.55e-05 ACAAGAGGGT GAGAGAAA CCAGTTTGTG chrII:12089742-12089822 39 3.55e-05 GAAAACGAGG GAGAGAAA TAGAGAAGAG chrIII:13694247-13694327 51 3.55e-05 AACTGAGAGG GAGAGAAA AAGAGAGGCA chrI:3672749-3672829 72 3.55e-05 CAAAACGAAT GAGAGAAA G chrV:8445834-8445914 70 3.55e-05 ACCAGTGAAT GAGAGAAA AAC chrV:11533131-11533211 33 5.59e-05 AATCGAAAGT GAAAGAGA AAGGAGATGA chrIII:2876134-2876214 18 5.59e-05 agtacgcaga gaaagaga gtagggagaA chrV:5991641-5991721 57 5.59e-05 ATATTTTTGG GAAAGAGA AAACGAGTCG chrIII:12583638-12583718 69 5.59e-05 GGTCCAGGAG GAAAGAGA GAAG chrIII:5421544-5421624 65 5.59e-05 TTCTACGCTT GAAAGAGA GTGTGTCT chrV:20424393-20424473 62 5.59e-05 CACTCATTGA GAAAGAGA AGAAACAAAC chrV:10717395-10717475 34 5.59e-05 GGAAGATAGA GAAAGAGA GATCACAGAG chrX:12844314-12844394 10 5.59e-05 AAACTCACC GAAAGAGA AAGTTTCACG chrV:5065147-5065227 29 5.59e-05 GCATAAAAAT GAAAGAGA AACGGAGAAG chrIII:13059505-13059585 72 8.34e-05 TCTTTCTGAT GAAAGAAA T chrII:3786690-3786770 67 8.34e-05 GTTTACGAGT GAAAGAAA ATGTCA chrX:15360744-15360824 56 8.34e-05 AACGAAAAAC GAAAGAAA AACGAAAACC chrII:10851142-10851222 63 9.84e-05 CTCCGCCACT GACAGAGA CAGGCATCTG chrX:5696317-5696397 30 9.84e-05 CAACGCGTGA GACAGAGA GGGTACGTGA chrV:11802562-11802642 4 9.84e-05 CAT GACAGAGA GGACATCTTC chrII:9937711-9937791 60 1.19e-04 TAGAGACGCA GACAGAAA ATCAGGGAAA chrI:5311877-5311957 58 1.19e-04 TCCTCTCCGA GACAGAAA CCAAAATGAC chrX:15607123-15607203 59 1.39e-04 GAGAGACAAA AAGAGAGA AGAGTGAAAT chrV:2672794-2672874 39 1.39e-04 GGTTACGTGC AAGAGAGA AGAGATTTAG chrM:2909-2989 27 1.87e-04 CTTTTATTTC AAGAGAAA AATTTTCAGT chrIV:7049843-7049923 65 1.87e-04 TCCAGACAGT AAGAGAAA AATGATTT chrX:15276817-15276897 3 1.87e-04 aa aagagaaa agaatggaat chrX:14508914-14508994 18 2.14e-04 CAATCAGCAG GAGAAAAA Atgtgtgtgt chrX:1478107-1478187 23 2.14e-04 GAACCTCAGC GAGAAAAA AAGTGGGAAC chrX:3832259-3832339 53 2.14e-04 GGACGTTTGT GAGAAAAA AAAAACCGTC chrV:9163126-9163206 72 2.14e-04 GCAGGCCGTA GAGAAAAA G chrIV:11956501-11956581 48 2.42e-04 TGGCGCGACG AAAAGAGA ATCGTCTCGT chrV:6229499-6229579 27 2.42e-04 GTATCTTTAG AAAAGAGA GGAGCTGGTG chrIII:7153940-7154020 9 2.42e-04 AGAGACGT AAAAGAGA TGCCAAAGAC chrI:9097737-9097817 64 2.42e-04 TTTCAGATTG AAAAGAGA GGAAAAAAC chrI:3710741-3710821 2 3.06e-04 A AAAAGAAA GTGAGCCTGT chrV:13202504-13202584 9 3.06e-04 AAAAGATG AAAAGAAA GCAGGGGAAC chrII:6822548-6822628 64 3.43e-04 aaatgttgaa gaaaaaaa gaagataga chrII:15205510-15205590 39 3.43e-04 ATCATTGACT GAAAAAAA ATTGCAATTG chrII:11928954-11929034 46 3.43e-04 CGTTCGCGTC GAAAAAAA AACGACTGGG chrX:3932894-3932974 61 3.43e-04 TGAAACATAA GAAAAAAA ACTTAGAGAT chrIV:8793432-8793512 12 3.64e-04 GAACACAGCG AACAGAGA TATGAATGAA chrII:13462187-13462267 39 3.95e-04 GCCGTTGATT GACAAAGA TCTCCGTATC chrM:5962-6042 39 3.95e-04 TACACGAGTT GGGAGAGA CTTGATCACC chrIV:11433902-11433982 5 4.22e-04 TGAA AACAGAAA AGTGCACGAG chrI:8869217-8869297 26 4.65e-04 ATTGAAAAAA GACAAAAA GTTCAGAAGG chrIII:4284866-4284946 21 4.65e-04 AGACGCTGTG GACAAAAA ATGTGTTGGC chrX:13356608-13356688 50 4.65e-04 GACAGCGGCG GGGAGAAA TAACCTGACT chrIV:16024264-16024344 66 5.07e-04 CCAACGTGCG GGAAGAGA GTGTGAG chrX:6750348-6750428 19 5.44e-04 AGAATTTTTG AAGAAAAA AGCATTGTAT chrIV:8527707-8527787 12 5.44e-04 TGAGTCTTGC AAGAAAAA TGTCTCAGTC chrX:15340121-15340201 61 6.74e-04 GATATATACC AAAAAAAA TGATGATCAA chrV:10729786-10729866 22 7.77e-04 TCTTCACTGC GAAAGAGG AAGTGAAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGARA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:3740496-3740576 1.5e-05 41_[+1]_31 chrI:6459652-6459732 1.5e-05 51_[+1]_21 chrIII:11689446-11689526 1.5e-05 31_[+1]_41 chrV:11532351-11532431 1.5e-05 36_[+1]_36 chrV:5393238-5393318 1.5e-05 14_[+1]_58 chrI:10585471-10585551 1.5e-05 13_[+1]_59 chrI:7477022-7477102 1.5e-05 16_[+1]_56 chrI:2587639-2587719 1.5e-05 [+1]_72 chrIII:7116832-7116912 1.5e-05 36_[+1]_36 chrII:9113028-9113108 3.5e-05 47_[+1]_25 chrX:8546209-8546289 3.5e-05 38_[+1]_34 chrX:6042204-6042284 3.5e-05 41_[+1]_31 chrII:3897924-3898004 3.5e-05 7_[+1]_65 chrV:10002916-10002996 3.5e-05 15_[+1]_57 chrII:12089742-12089822 3.5e-05 38_[+1]_34 chrIII:13694247-13694327 3.5e-05 50_[+1]_22 chrI:3672749-3672829 3.5e-05 71_[+1]_1 chrV:8445834-8445914 3.5e-05 69_[+1]_3 chrV:11533131-11533211 5.6e-05 32_[+1]_40 chrIII:2876134-2876214 5.6e-05 17_[+1]_55 chrV:5991641-5991721 5.6e-05 56_[+1]_16 chrIII:12583638-12583718 5.6e-05 68_[+1]_4 chrIII:5421544-5421624 5.6e-05 64_[+1]_8 chrV:20424393-20424473 5.6e-05 61_[+1]_11 chrV:10717395-10717475 5.6e-05 33_[+1]_39 chrX:12844314-12844394 5.6e-05 9_[+1]_63 chrV:5065147-5065227 5.6e-05 28_[+1]_44 chrIII:13059505-13059585 8.3e-05 71_[+1]_1 chrII:3786690-3786770 8.3e-05 66_[+1]_6 chrX:15360744-15360824 8.3e-05 55_[+1]_17 chrII:10851142-10851222 9.8e-05 62_[+1]_10 chrX:5696317-5696397 9.8e-05 29_[+1]_43 chrV:11802562-11802642 9.8e-05 3_[+1]_69 chrII:9937711-9937791 0.00012 59_[+1]_13 chrI:5311877-5311957 0.00012 57_[+1]_15 chrX:15607123-15607203 0.00014 58_[+1]_14 chrV:2672794-2672874 0.00014 38_[+1]_34 chrM:2909-2989 0.00019 26_[+1]_46 chrIV:7049843-7049923 0.00019 64_[+1]_8 chrX:15276817-15276897 0.00019 2_[+1]_70 chrX:14508914-14508994 0.00021 17_[+1]_55 chrX:1478107-1478187 0.00021 22_[+1]_50 chrX:3832259-3832339 0.00021 52_[+1]_20 chrV:9163126-9163206 0.00021 71_[+1]_1 chrIV:11956501-11956581 0.00024 47_[+1]_25 chrV:6229499-6229579 0.00024 26_[+1]_46 chrIII:7153940-7154020 0.00024 8_[+1]_64 chrI:9097737-9097817 0.00024 63_[+1]_9 chrI:3710741-3710821 0.00031 1_[+1]_71 chrV:13202504-13202584 0.00031 8_[+1]_64 chrII:6822548-6822628 0.00034 63_[+1]_9 chrII:15205510-15205590 0.00034 38_[+1]_34 chrII:11928954-11929034 0.00034 45_[+1]_27 chrX:3932894-3932974 0.00034 60_[+1]_12 chrIV:8793432-8793512 0.00036 11_[+1]_61 chrII:13462187-13462267 0.0004 38_[+1]_34 chrM:5962-6042 0.0004 38_[+1]_34 chrIV:11433902-11433982 0.00042 4_[+1]_68 chrI:8869217-8869297 0.00046 25_[+1]_47 chrIII:4284866-4284946 0.00046 20_[+1]_52 chrX:13356608-13356688 0.00046 49_[+1]_23 chrIV:16024264-16024344 0.00051 65_[+1]_7 chrX:6750348-6750428 0.00054 18_[+1]_54 chrIV:8527707-8527787 0.00054 11_[+1]_61 chrX:15340121-15340201 0.00067 60_[+1]_12 chrV:10729786-10729866 0.00078 21_[+1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGARA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARAGARA width=8 seqs=66 chrI:3740496-3740576 ( 42) GAGAGAGA 1 chrI:6459652-6459732 ( 52) GAGAGAGA 1 chrIII:11689446-11689526 ( 32) GAGAGAGA 1 chrV:11532351-11532431 ( 37) GAGAGAGA 1 chrV:5393238-5393318 ( 15) GAGAGAGA 1 chrI:10585471-10585551 ( 14) GAGAGAGA 1 chrI:7477022-7477102 ( 17) GAGAGAGA 1 chrI:2587639-2587719 ( 1) GAGAGAGA 1 chrIII:7116832-7116912 ( 37) GAGAGAGA 1 chrII:9113028-9113108 ( 48) GAGAGAAA 1 chrX:8546209-8546289 ( 39) GAGAGAAA 1 chrX:6042204-6042284 ( 42) GAGAGAAA 1 chrII:3897924-3898004 ( 8) GAGAGAAA 1 chrV:10002916-10002996 ( 16) GAGAGAAA 1 chrII:12089742-12089822 ( 39) GAGAGAAA 1 chrIII:13694247-13694327 ( 51) GAGAGAAA 1 chrI:3672749-3672829 ( 72) GAGAGAAA 1 chrV:8445834-8445914 ( 70) GAGAGAAA 1 chrV:11533131-11533211 ( 33) GAAAGAGA 1 chrIII:2876134-2876214 ( 18) GAAAGAGA 1 chrV:5991641-5991721 ( 57) GAAAGAGA 1 chrIII:12583638-12583718 ( 69) GAAAGAGA 1 chrIII:5421544-5421624 ( 65) GAAAGAGA 1 chrV:20424393-20424473 ( 62) GAAAGAGA 1 chrV:10717395-10717475 ( 34) GAAAGAGA 1 chrX:12844314-12844394 ( 10) GAAAGAGA 1 chrV:5065147-5065227 ( 29) GAAAGAGA 1 chrIII:13059505-13059585 ( 72) GAAAGAAA 1 chrII:3786690-3786770 ( 67) GAAAGAAA 1 chrX:15360744-15360824 ( 56) GAAAGAAA 1 chrII:10851142-10851222 ( 63) GACAGAGA 1 chrX:5696317-5696397 ( 30) GACAGAGA 1 chrV:11802562-11802642 ( 4) GACAGAGA 1 chrII:9937711-9937791 ( 60) GACAGAAA 1 chrI:5311877-5311957 ( 58) GACAGAAA 1 chrX:15607123-15607203 ( 59) AAGAGAGA 1 chrV:2672794-2672874 ( 39) AAGAGAGA 1 chrM:2909-2989 ( 27) AAGAGAAA 1 chrIV:7049843-7049923 ( 65) AAGAGAAA 1 chrX:15276817-15276897 ( 3) AAGAGAAA 1 chrX:14508914-14508994 ( 18) GAGAAAAA 1 chrX:1478107-1478187 ( 23) GAGAAAAA 1 chrX:3832259-3832339 ( 53) GAGAAAAA 1 chrV:9163126-9163206 ( 72) GAGAAAAA 1 chrIV:11956501-11956581 ( 48) AAAAGAGA 1 chrV:6229499-6229579 ( 27) AAAAGAGA 1 chrIII:7153940-7154020 ( 9) AAAAGAGA 1 chrI:9097737-9097817 ( 64) AAAAGAGA 1 chrI:3710741-3710821 ( 2) AAAAGAAA 1 chrV:13202504-13202584 ( 9) AAAAGAAA 1 chrII:6822548-6822628 ( 64) GAAAAAAA 1 chrII:15205510-15205590 ( 39) GAAAAAAA 1 chrII:11928954-11929034 ( 46) GAAAAAAA 1 chrX:3932894-3932974 ( 61) GAAAAAAA 1 chrIV:8793432-8793512 ( 12) AACAGAGA 1 chrII:13462187-13462267 ( 39) GACAAAGA 1 chrM:5962-6042 ( 39) GGGAGAGA 1 chrIV:11433902-11433982 ( 5) AACAGAAA 1 chrI:8869217-8869297 ( 26) GACAAAAA 1 chrIII:4284866-4284946 ( 21) GACAAAAA 1 chrX:13356608-13356688 ( 50) GGGAGAAA 1 chrIV:16024264-16024344 ( 66) GGAAGAGA 1 chrX:6750348-6750428 ( 19) AAGAAAAA 1 chrIV:8527707-8527787 ( 12) AAGAAAAA 1 chrX:15340121-15340201 ( 61) AAAAAAAA 1 chrV:10729786-10729866 ( 22) GAAAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGARA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.45311 E= 7.5e-017 -26 -1269 182 -1269 172 -1269 -224 -1269 39 -49 113 -1269 179 -1269 -1269 -1269 -45 -1269 188 -1269 179 -1269 -1269 -1269 83 -1269 118 -1269 176 -1269 -382 -1269 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGARA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 7.5e-017 0.242424 0.000000 0.757576 0.000000 0.954545 0.000000 0.045455 0.000000 0.378788 0.151515 0.469697 0.000000 1.000000 0.000000 0.000000 0.000000 0.212121 0.000000 0.787879 0.000000 1.000000 0.000000 0.000000 0.000000 0.515152 0.000000 0.484848 0.000000 0.984848 0.000000 0.015152 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGARA MEME-1 regular expression -------------------------------------------------------------------------------- [GA]A[GA]A[GA]A[AG]A -------------------------------------------------------------------------------- Time 10.11 secs. ******************************************************************************** ******************************************************************************** MOTIF TYTTYTCT MEME-2 width = 8 sites = 111 llr = 736 E-value = 2.6e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTTYTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::2 pos.-specific C 242:6:72 probability G ::::::31 matrix T 868a4a:5 bits 2.2 2.0 1.8 * * 1.6 * * Relative 1.3 * ** Entropy 1.1 ******* (9.6 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TTTTCTCT consensus CC T GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTYTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:7162433-7162513 28 2.33e-05 CACAATTTTC TTTTCTCT CCGCTGCGTA chrIII:7179830-7179910 49 2.33e-05 CGATTTTCCA TTTTCTCT TGTTTCGCCC chrV:6246677-6246757 68 2.33e-05 CGCCGCCTCG TTTTCTCT TGCGT chrII:6926648-6926728 24 2.33e-05 TTTTGTTTCT TTTTCTCT GCCACTATTA chrX:14506093-14506173 26 2.33e-05 ATCTCCGTCG TTTTCTCT CACTGCCTCT chrIV:7049843-7049923 3 2.33e-05 TA TTTTCTCT TTTGATTTAT chrX:15276817-15276897 72 2.33e-05 ACATTTGCAC TTTtctct a chrV:8905793-8905873 31 2.33e-05 AATGTGTCTC TTTTCTCT CCTGTGCTCA chrV:5763985-5764065 30 2.33e-05 GAGGAACAGA TTTTCTCT GGGTCTCTTC chrII:6026803-6026883 18 2.33e-05 TGAATTGTCA TTTTCTCT GTTTCTCTAT chrII:6827536-6827616 68 4.08e-05 CTCCCCCTCT TCTTCTCT CTCAG chrX:12872410-12872490 34 4.08e-05 ATCGCAtctc tcttctct ctctctcttt chrI:3822830-3822910 13 4.08e-05 gtcgtcgtcg tcttcTCT ACCCGTGATT chrII:6842754-6842834 57 4.08e-05 TCGGCCGCCC TCTTCTCT GGCCAAAAAG chrX:13105100-13105180 71 5.84e-05 TTATCTTTTG TTTTCTCC CG chrIII:5225048-5225128 60 5.84e-05 GCTCCGCCCA TTTTCTCC CCCAGCGGCG chrX:8029269-8029349 71 5.84e-05 CGTTGCCTTC TTTTCTCC TC chrIV:3234421-3234501 61 5.84e-05 GTGTTTCCGT TTTTCTCC TGGCGAATTT chrII:915381-915461 33 5.84e-05 CGTTATCTAT TTTTCTCC AGTTTTGTGT chrX:11462210-11462290 63 7.16e-05 TGAGAACGTC TCTTCTCC ACTTTTCAAC chrV:619180-619260 56 7.16e-05 TCTCTGCGTC TCTTCTCC TCCCCTCACT chrX:11339522-11339602 18 1.03e-04 GATGGTATCG TTTTTTCT CGCCGCCTTT chrX:14508914-14508994 52 1.03e-04 gtCCATCTTC TTTTTTCT CGACAATCTA chrIV:11956501-11956581 65 1.03e-04 AATCGTCTCG TTTTTTCT CGCTTTTG chrII:7529261-7529341 62 1.03e-04 CGAACGTTTC TTTTTTCT TTTTCACTCA chrIV:14594384-14594464 7 1.03e-04 GTAAAC TTTTTTCT TCACTGTTTT chrI:10769843-10769923 61 1.26e-04 ATTCCCTTCT TCTTTTCT TCCACTGGCA chrIII:11689446-11689526 7 1.26e-04 TTTAGA TCTTTTCT GTGCCCCGGG chrIV:13028701-13028781 7 1.26e-04 TAGTCA TCTTTTCT TTCCCAGCAG chrV:15071393-15071473 34 1.91e-04 ctttctctaa ttctctct ctctctcatt chrII:15205510-15205590 1 1.91e-04 . ttctctct ctctctctct chrM:2070-2150 29 1.91e-04 tttaattGGA TTTTCTGT TTATACAACT chrV:6276292-6276372 33 1.91e-04 GAACAAGTCT TTCTCTCT CTCTGACATA chrV:12637384-12637464 39 1.91e-04 TCTGCACCCA TTCTCTCT TTGTCTATGT chrX:15274214-15274294 72 1.91e-04 TTTCAGGCGT TTTTCTGT C chrIV:9526156-9526236 52 2.63e-04 GCCATCGTTC TTTTTTCC CTTTTTCTTT chrX:13360089-13360169 67 2.63e-04 TATACTCGCC TTTTTTCC TCGACC chrIII:5812772-5812852 46 2.63e-04 TATCATTCCG TCTTCTGT CACACACATA chrIV:6099930-6100010 11 2.63e-04 CTCTCACGTT TCTTCTGT CTCACCAATA chrII:10851142-10851222 34 2.98e-04 ATCGTCTTCT TCTTTTCC ATCTTTAGGC chrX:14602801-14602881 47 2.98e-04 GACTTGTCCT CTTTCTCT GCACTCTCCG chrIII:6895282-6895362 44 2.98e-04 TCGAAAGACA CTTTCTCT GCGTCTCTTC chrV:6275341-6275421 31 2.98e-04 CTTATCAGCT TCTTTTCC TGGTTTCCTG chrIII:5938162-5938242 55 2.98e-04 AACAAACACC TCTTTTCC GCACTTTCCG chrIII:7166958-7167038 11 2.98e-04 TTTTCCTCCT CTTTCTCT TTTCCTGTGA chrX:6743008-6743088 18 2.98e-04 CAATACCATC CTTTCTCT CATTTCTCTC chrX:7990443-7990523 5 2.98e-04 TATC TCTTTTCC CACTCACTTG chrII:6843804-6843884 42 3.11e-04 TTTGACAAGA CCTTCTCT TTTGTGCGCC chrV:19527689-19527769 20 3.60e-04 CAGAAGCCAC TTTTCTGC ACAGGTAGCA chrV:13202504-13202584 54 3.60e-04 TGTTTTTCGA TTTTCTCG TGTTATATCG chrV:10858568-10858648 4 3.96e-04 CGC TCTTCTGC TAGGGGCCCT chrIII:1926601-1926681 43 3.96e-04 TCTCGTCGCC TCCTCTCC TCGTCTTTCG chrI:5311877-5311957 48 3.96e-04 CGAAAGGGAC TCCTCTCC GAGACAGAAA chrI:8869217-8869297 63 4.96e-04 ATTCATTCAC TTTTTTGT TTCATCTCTT chrIV:11092774-11092854 12 4.96e-04 TCTAGATATC TTCTTTCT TTCTTTTTCT chrIV:8527707-8527787 41 4.96e-04 CTTCACAATC TTTTTTCA CTAATTATTG chrII:9937711-9937791 32 4.96e-04 CTTTTTCGCA TTTTTTGT CTACTTTTTA chrX:12878070-12878150 8 4.96e-04 TTGCATT TTTTTTGT TACCCGCCGG chrI:9883743-9883823 31 4.96e-04 GGAAGTCTAT TTTTTTCA AATTTTTGTG chrIV:5778500-5778580 73 4.96e-04 CGATCACTGA TTTTTTGT chrV:8201367-8201447 27 4.96e-04 TCTTTCATTT TTTTTTGT CACACTAATG chrX:3832259-3832339 25 4.96e-04 ACAAGTGGTC TTTTTTCA AGCGTTGACG chrX:3829795-3829875 35 4.96e-04 ACACAAATGT CTTTCTCC GCTTTTTTTT chrV:6614539-6614619 34 4.96e-04 GTACCGCAAA TTTTTTCA ATTTTAATCC chrV:3262369-3262449 13 4.96e-04 ATACTTTTTG TTCTTTCT AGAGTTGCAC chrV:15354851-15354931 17 4.96e-04 TAGTTTGTAG TTTTTTGT CACTGCACCG chrI:7056844-7056924 44 5.71e-04 GCGAAGTATT TCTTTTGT TTTCTGAACT chrIV:9196937-9197017 37 5.71e-04 TCGTCGCCAT CCTTCTCC GTCTCCAATG chrIV:8534400-8534480 22 5.71e-04 GTACTCTTTG TCTTTTGT GTCCTTTTTT chrV:532157-532237 49 5.71e-04 TCTGCGTCTC TCTTTTCA ATGGTATTCC chrII:6838422-6838502 1 5.71e-04 . TCTTTTGT CCTCTGTGTG chrM:2283-2363 59 6.72e-04 GCCATTTGAT TTTTCTGA AGGTGAAAGG chrX:12515797-12515877 27 6.72e-04 TTCCACACAT TTCTCTCA GGCCGCCGAT chrII:6836386-6836466 1 6.72e-04 . TTCTCTCA CAGTTTAGTG chrV:14505803-14505883 9 7.81e-04 TCTTTTCA TTTTTTGC TTTTTTATGT chrIII:2471981-2472061 55 7.81e-04 TACCCCACCC TCCTCTCA GCGTCTCCAG chrII:7777510-7777590 28 7.81e-04 GGTAGACATG TCTTCTGA TAAGATAGAG chrIV:5100258-5100338 11 7.81e-04 TCATCGTCAG TTTTTTCG ACACAACACC chrIV:17472310-17472390 43 7.81e-04 TTTACGTTTG TTTTTTCG AAACATCAGG chrX:6338626-6338706 51 7.81e-04 TCATTTTGTG TCCTCTCA TCACAAATTG chrIV:8530770-8530850 47 7.81e-04 GTGATAAGAA TCTTCTGA TTCCGAAGAA chrV:17721924-17722004 47 7.81e-04 CCATTCGAGT TCTTCTGA TTACTGCCAA chrIV:8463244-8463324 44 7.81e-04 CATAATCACT TCTTCTGA CCTGACAGGT chrX:7181831-7181911 71 8.79e-04 ATACAGTAAT TCTTTTCG CG chrV:7415964-7416044 52 8.79e-04 AACCCTCACA CTTTCTCA AGAAAATAGG chrII:5330300-5330380 22 8.79e-04 TTTtccctca ctctctct gtctctatgt chrV:10717395-10717475 69 8.79e-04 TCTTCGTTTT TCTTTTCG TGTC chrIV:5593973-5594053 1 8.79e-04 . TCTTTTCG ATTTCGATAT chrII:11928954-11929034 18 8.79e-04 ATGTTCGTCT CTCTCTCT CTCTCAAGGC chrIV:16024264-16024344 30 8.79e-04 tatttctcca ctctctct ACACACTTTG chrIV:5764492-5764572 56 9.33e-04 GAAAATAGAA CCCTCTCT TCGCGTGGTA chrII:15263147-15263227 41 9.91e-04 CGCCATGATT CCTTTTCC GCGCGCGCGC chrX:8546209-8546289 64 9.91e-04 GAGGCAGCGT CCTTTTCC ATTGCAAGG chrX:12425553-12425633 10 9.91e-04 TATCATTCA TTCTCTGC TATCCCATCA chrX:14508103-14508183 5 1.02e-03 actt tcctctcg cctatccctt chrX:15607679-15607759 16 1.02e-03 CTCTTCCGAT TCCTCTCG TCGTTTCTGT chrIV:5607496-5607576 48 1.02e-03 ACGTGGAGTG TCTTCTGG CGCCGGGGAC chrII:13469299-13469379 67 1.02e-03 CAAAAGGCAT TCCTCTCG TTCACG chrM:5962-6042 4 1.14e-03 ACA TTTTTTGA TGCTGCTCTA chrM:8470-8550 50 1.14e-03 AAATACTTCA TTTTTTGA TCCAAGAACT chrX:12518014-12518094 70 1.14e-03 GTTCTATTGT TTCTTTGT AGT chrX:10576654-10576734 57 1.23e-03 GTACGCTGCG CCTTCTGC TTTGCAACCG chrX:6736597-6736677 31 1.23e-03 TCTCTCATTG TCCTTTGT CACGATTGAA chrIII:2876134-2876214 54 1.29e-03 GTTGGCGCCT CTCTTTCT ATCTACCGAA chrIII:5939795-5939875 70 1.29e-03 TGACCGTCTG CTCTTTCT TAT chrV:6214005-6214085 50 1.52e-03 GAAAGTCCCA CTCTCTCA CACCGCCTGA chrIV:9803722-9803802 26 1.52e-03 GTCTCACACA CTCTCTCA CATTTTGACT chrIII:13059505-13059585 63 1.52e-03 AAATGGGTGT CTTTCTGA TGAAAGAAAT chrX:15360744-15360824 29 1.60e-03 GATATTACAA CTTTTTGC TAGATATGAA chrX:9337924-9338004 4 1.65e-03 ACC CCTTTTGC GTCGCGACTA chrIII:7153940-7154020 64 2.05e-03 ACTATCTCTG ATTTCTCT AAAACCTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTYTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:7162433-7162513 2.3e-05 27_[+2]_45 chrIII:7179830-7179910 2.3e-05 48_[+2]_24 chrV:6246677-6246757 2.3e-05 67_[+2]_5 chrII:6926648-6926728 2.3e-05 23_[+2]_49 chrX:14506093-14506173 2.3e-05 25_[+2]_47 chrIV:7049843-7049923 2.3e-05 2_[+2]_70 chrX:15276817-15276897 2.3e-05 71_[+2]_1 chrV:8905793-8905873 2.3e-05 30_[+2]_42 chrV:5763985-5764065 2.3e-05 29_[+2]_43 chrII:6026803-6026883 2.3e-05 17_[+2]_55 chrII:6827536-6827616 4.1e-05 67_[+2]_5 chrX:12872410-12872490 4.1e-05 33_[+2]_39 chrI:3822830-3822910 4.1e-05 12_[+2]_60 chrII:6842754-6842834 4.1e-05 56_[+2]_16 chrX:13105100-13105180 5.8e-05 70_[+2]_2 chrIII:5225048-5225128 5.8e-05 59_[+2]_13 chrX:8029269-8029349 5.8e-05 70_[+2]_2 chrIV:3234421-3234501 5.8e-05 60_[+2]_12 chrII:915381-915461 5.8e-05 32_[+2]_40 chrX:11462210-11462290 7.2e-05 62_[+2]_10 chrV:619180-619260 7.2e-05 55_[+2]_17 chrX:11339522-11339602 0.0001 17_[+2]_55 chrX:14508914-14508994 0.0001 51_[+2]_21 chrIV:11956501-11956581 0.0001 64_[+2]_8 chrII:7529261-7529341 0.0001 61_[+2]_11 chrIV:14594384-14594464 0.0001 6_[+2]_66 chrI:10769843-10769923 0.00013 60_[+2]_12 chrIII:11689446-11689526 0.00013 6_[+2]_66 chrIV:13028701-13028781 0.00013 6_[+2]_66 chrV:15071393-15071473 0.00019 33_[+2]_39 chrII:15205510-15205590 0.00019 [+2]_72 chrM:2070-2150 0.00019 28_[+2]_44 chrV:6276292-6276372 0.00019 32_[+2]_40 chrV:12637384-12637464 0.00019 38_[+2]_34 chrX:15274214-15274294 0.00019 71_[+2]_1 chrIV:9526156-9526236 0.00026 51_[+2]_21 chrX:13360089-13360169 0.00026 66_[+2]_6 chrIII:5812772-5812852 0.00026 45_[+2]_27 chrIV:6099930-6100010 0.00026 10_[+2]_62 chrII:10851142-10851222 0.0003 33_[+2]_39 chrX:14602801-14602881 0.0003 46_[+2]_26 chrIII:6895282-6895362 0.0003 43_[+2]_29 chrV:6275341-6275421 0.0003 30_[+2]_42 chrIII:5938162-5938242 0.0003 54_[+2]_18 chrIII:7166958-7167038 0.0003 10_[+2]_62 chrX:6743008-6743088 0.0003 17_[+2]_55 chrX:7990443-7990523 0.0003 4_[+2]_68 chrII:6843804-6843884 0.00031 41_[+2]_31 chrV:19527689-19527769 0.00036 19_[+2]_53 chrV:13202504-13202584 0.00036 53_[+2]_19 chrV:10858568-10858648 0.0004 3_[+2]_69 chrIII:1926601-1926681 0.0004 42_[+2]_30 chrI:5311877-5311957 0.0004 47_[+2]_25 chrI:8869217-8869297 0.0005 62_[+2]_10 chrIV:11092774-11092854 0.0005 11_[+2]_61 chrIV:8527707-8527787 0.0005 40_[+2]_32 chrII:9937711-9937791 0.0005 31_[+2]_41 chrX:12878070-12878150 0.0005 7_[+2]_65 chrI:9883743-9883823 0.0005 30_[+2]_42 chrIV:5778500-5778580 0.0005 72_[+2] chrV:8201367-8201447 0.0005 26_[+2]_46 chrX:3832259-3832339 0.0005 24_[+2]_48 chrX:3829795-3829875 0.0005 34_[+2]_38 chrV:6614539-6614619 0.0005 33_[+2]_39 chrV:3262369-3262449 0.0005 12_[+2]_60 chrV:15354851-15354931 0.0005 16_[+2]_56 chrI:7056844-7056924 0.00057 43_[+2]_29 chrIV:9196937-9197017 0.00057 36_[+2]_36 chrIV:8534400-8534480 0.00057 21_[+2]_51 chrV:532157-532237 0.00057 48_[+2]_24 chrII:6838422-6838502 0.00057 [+2]_72 chrM:2283-2363 0.00067 58_[+2]_14 chrX:12515797-12515877 0.00067 26_[+2]_46 chrII:6836386-6836466 0.00067 [+2]_72 chrV:14505803-14505883 0.00078 8_[+2]_64 chrIII:2471981-2472061 0.00078 54_[+2]_18 chrII:7777510-7777590 0.00078 27_[+2]_45 chrIV:5100258-5100338 0.00078 10_[+2]_62 chrIV:17472310-17472390 0.00078 42_[+2]_30 chrX:6338626-6338706 0.00078 50_[+2]_22 chrIV:8530770-8530850 0.00078 46_[+2]_26 chrV:17721924-17722004 0.00078 46_[+2]_26 chrIV:8463244-8463324 0.00078 43_[+2]_29 chrX:7181831-7181911 0.00088 70_[+2]_2 chrV:7415964-7416044 0.00088 51_[+2]_21 chrII:5330300-5330380 0.00088 21_[+2]_51 chrV:10717395-10717475 0.00088 68_[+2]_4 chrIV:5593973-5594053 0.00088 [+2]_72 chrII:11928954-11929034 0.00088 17_[+2]_55 chrIV:16024264-16024344 0.00088 29_[+2]_43 chrIV:5764492-5764572 0.00093 55_[+2]_17 chrII:15263147-15263227 0.00099 40_[+2]_32 chrX:8546209-8546289 0.00099 63_[+2]_9 chrX:12425553-12425633 0.00099 9_[+2]_63 chrX:14508103-14508183 0.001 4_[+2]_68 chrX:15607679-15607759 0.001 15_[+2]_57 chrIV:5607496-5607576 0.001 47_[+2]_25 chrII:13469299-13469379 0.001 66_[+2]_6 chrM:5962-6042 0.0011 3_[+2]_69 chrM:8470-8550 0.0011 49_[+2]_23 chrX:12518014-12518094 0.0011 69_[+2]_3 chrX:10576654-10576734 0.0012 56_[+2]_16 chrX:6736597-6736677 0.0012 30_[+2]_42 chrIII:2876134-2876214 0.0013 53_[+2]_19 chrIII:5939795-5939875 0.0013 69_[+2]_3 chrV:6214005-6214085 0.0015 49_[+2]_23 chrIV:9803722-9803802 0.0015 25_[+2]_47 chrIII:13059505-13059585 0.0015 62_[+2]_10 chrX:15360744-15360824 0.0016 28_[+2]_44 chrX:9337924-9338004 0.0017 3_[+2]_69 chrIII:7153940-7154020 0.002 63_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTYTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTTYTCT width=8 seqs=111 chrIII:7162433-7162513 ( 28) TTTTCTCT 1 chrIII:7179830-7179910 ( 49) TTTTCTCT 1 chrV:6246677-6246757 ( 68) TTTTCTCT 1 chrII:6926648-6926728 ( 24) TTTTCTCT 1 chrX:14506093-14506173 ( 26) TTTTCTCT 1 chrIV:7049843-7049923 ( 3) TTTTCTCT 1 chrX:15276817-15276897 ( 72) TTTTCTCT 1 chrV:8905793-8905873 ( 31) TTTTCTCT 1 chrV:5763985-5764065 ( 30) TTTTCTCT 1 chrII:6026803-6026883 ( 18) TTTTCTCT 1 chrII:6827536-6827616 ( 68) TCTTCTCT 1 chrX:12872410-12872490 ( 34) TCTTCTCT 1 chrI:3822830-3822910 ( 13) TCTTCTCT 1 chrII:6842754-6842834 ( 57) TCTTCTCT 1 chrX:13105100-13105180 ( 71) TTTTCTCC 1 chrIII:5225048-5225128 ( 60) TTTTCTCC 1 chrX:8029269-8029349 ( 71) TTTTCTCC 1 chrIV:3234421-3234501 ( 61) TTTTCTCC 1 chrII:915381-915461 ( 33) TTTTCTCC 1 chrX:11462210-11462290 ( 63) TCTTCTCC 1 chrV:619180-619260 ( 56) TCTTCTCC 1 chrX:11339522-11339602 ( 18) TTTTTTCT 1 chrX:14508914-14508994 ( 52) TTTTTTCT 1 chrIV:11956501-11956581 ( 65) TTTTTTCT 1 chrII:7529261-7529341 ( 62) TTTTTTCT 1 chrIV:14594384-14594464 ( 7) TTTTTTCT 1 chrI:10769843-10769923 ( 61) TCTTTTCT 1 chrIII:11689446-11689526 ( 7) TCTTTTCT 1 chrIV:13028701-13028781 ( 7) TCTTTTCT 1 chrV:15071393-15071473 ( 34) TTCTCTCT 1 chrII:15205510-15205590 ( 1) TTCTCTCT 1 chrM:2070-2150 ( 29) TTTTCTGT 1 chrV:6276292-6276372 ( 33) TTCTCTCT 1 chrV:12637384-12637464 ( 39) TTCTCTCT 1 chrX:15274214-15274294 ( 72) TTTTCTGT 1 chrIV:9526156-9526236 ( 52) TTTTTTCC 1 chrX:13360089-13360169 ( 67) TTTTTTCC 1 chrIII:5812772-5812852 ( 46) TCTTCTGT 1 chrIV:6099930-6100010 ( 11) TCTTCTGT 1 chrII:10851142-10851222 ( 34) TCTTTTCC 1 chrX:14602801-14602881 ( 47) CTTTCTCT 1 chrIII:6895282-6895362 ( 44) CTTTCTCT 1 chrV:6275341-6275421 ( 31) TCTTTTCC 1 chrIII:5938162-5938242 ( 55) TCTTTTCC 1 chrIII:7166958-7167038 ( 11) CTTTCTCT 1 chrX:6743008-6743088 ( 18) CTTTCTCT 1 chrX:7990443-7990523 ( 5) TCTTTTCC 1 chrII:6843804-6843884 ( 42) CCTTCTCT 1 chrV:19527689-19527769 ( 20) TTTTCTGC 1 chrV:13202504-13202584 ( 54) TTTTCTCG 1 chrV:10858568-10858648 ( 4) TCTTCTGC 1 chrIII:1926601-1926681 ( 43) TCCTCTCC 1 chrI:5311877-5311957 ( 48) TCCTCTCC 1 chrI:8869217-8869297 ( 63) TTTTTTGT 1 chrIV:11092774-11092854 ( 12) TTCTTTCT 1 chrIV:8527707-8527787 ( 41) TTTTTTCA 1 chrII:9937711-9937791 ( 32) TTTTTTGT 1 chrX:12878070-12878150 ( 8) TTTTTTGT 1 chrI:9883743-9883823 ( 31) TTTTTTCA 1 chrIV:5778500-5778580 ( 73) TTTTTTGT 1 chrV:8201367-8201447 ( 27) TTTTTTGT 1 chrX:3832259-3832339 ( 25) TTTTTTCA 1 chrX:3829795-3829875 ( 35) CTTTCTCC 1 chrV:6614539-6614619 ( 34) TTTTTTCA 1 chrV:3262369-3262449 ( 13) TTCTTTCT 1 chrV:15354851-15354931 ( 17) TTTTTTGT 1 chrI:7056844-7056924 ( 44) TCTTTTGT 1 chrIV:9196937-9197017 ( 37) CCTTCTCC 1 chrIV:8534400-8534480 ( 22) TCTTTTGT 1 chrV:532157-532237 ( 49) TCTTTTCA 1 chrII:6838422-6838502 ( 1) TCTTTTGT 1 chrM:2283-2363 ( 59) TTTTCTGA 1 chrX:12515797-12515877 ( 27) TTCTCTCA 1 chrII:6836386-6836466 ( 1) TTCTCTCA 1 chrV:14505803-14505883 ( 9) TTTTTTGC 1 chrIII:2471981-2472061 ( 55) TCCTCTCA 1 chrII:7777510-7777590 ( 28) TCTTCTGA 1 chrIV:5100258-5100338 ( 11) TTTTTTCG 1 chrIV:17472310-17472390 ( 43) TTTTTTCG 1 chrX:6338626-6338706 ( 51) TCCTCTCA 1 chrIV:8530770-8530850 ( 47) TCTTCTGA 1 chrV:17721924-17722004 ( 47) TCTTCTGA 1 chrIV:8463244-8463324 ( 44) TCTTCTGA 1 chrX:7181831-7181911 ( 71) TCTTTTCG 1 chrV:7415964-7416044 ( 52) CTTTCTCA 1 chrII:5330300-5330380 ( 22) CTCTCTCT 1 chrV:10717395-10717475 ( 69) TCTTTTCG 1 chrIV:5593973-5594053 ( 1) TCTTTTCG 1 chrII:11928954-11929034 ( 18) CTCTCTCT 1 chrIV:16024264-16024344 ( 30) CTCTCTCT 1 chrIV:5764492-5764572 ( 56) CCCTCTCT 1 chrII:15263147-15263227 ( 41) CCTTTTCC 1 chrX:8546209-8546289 ( 64) CCTTTTCC 1 chrX:12425553-12425633 ( 10) TTCTCTGC 1 chrX:14508103-14508183 ( 5) TCCTCTCG 1 chrX:15607679-15607759 ( 16) TCCTCTCG 1 chrIV:5607496-5607576 ( 48) TCTTCTGG 1 chrII:13469299-13469379 ( 67) TCCTCTCG 1 chrM:5962-6042 ( 4) TTTTTTGA 1 chrM:8470-8550 ( 50) TTTTTTGA 1 chrX:12518014-12518094 ( 70) TTCTTTGT 1 chrX:10576654-10576734 ( 57) CCTTCTGC 1 chrX:6736597-6736677 ( 31) TCCTTTGT 1 chrIII:2876134-2876214 ( 54) CTCTTTCT 1 chrIII:5939795-5939875 ( 70) CTCTTTCT 1 chrV:6214005-6214085 ( 50) CTCTCTCA 1 chrIV:9803722-9803802 ( 26) CTCTCTCA 1 chrIII:13059505-13059585 ( 63) CTTTCTGA 1 chrX:15360744-15360824 ( 29) CTTTTTGC 1 chrX:9337924-9338004 ( 4) CCTTTTGC 1 chrIII:7153940-7154020 ( 64) ATTTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTYTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.57289 E= 2.6e-017 -500 -10 -1344 149 -1344 87 -1344 111 -1344 14 -1344 144 -1344 -1344 -1344 182 -1344 146 -1344 55 -1344 -1344 -1344 182 -1344 176 38 -1344 -69 14 -125 81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTYTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 111 E= 2.6e-017 0.009009 0.198198 0.000000 0.792793 0.000000 0.387387 0.000000 0.612613 0.000000 0.234234 0.000000 0.765766 0.000000 0.000000 0.000000 1.000000 0.000000 0.585586 0.000000 0.414414 0.000000 0.000000 0.000000 1.000000 0.000000 0.720721 0.279279 0.000000 0.180180 0.234234 0.090090 0.495495 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTYTCT MEME-2 regular expression -------------------------------------------------------------------------------- T[TC][TC]T[CT]T[CG][TC] -------------------------------------------------------------------------------- Time 15.73 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGACGSA MEME-3 width = 8 sites = 14 llr = 143 E-value = 6.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGACGSA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:a:::a pos.-specific C ::::8:5: probability G a:a:2a5: matrix T :::::::: bits 2.2 * * * 2.0 * * * 1.8 **** * * 1.6 ****** * Relative 1.3 ****** * Entropy 1.1 ******** (14.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGACGCA consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGSA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15607123-15607203 16 2.21e-05 TGCCGCGTAG GAGACGGA TTGGAGATGA chrI:3740496-3740576 68 2.21e-05 ACGACACAAA GAGACGGA GACAA chrV:5991641-5991721 23 2.21e-05 GGAGCACGAA GAGACGCA GACAATGTGG chrI:6459652-6459732 38 2.21e-05 aaaaggaata gagacgga gaaagagaga chrV:10871512-10871592 51 2.21e-05 CTGATTGCTG GAGACGGA GACGGCGAGT chrII:9937711-9937791 52 2.21e-05 ACTTTTTATA GAGACGCA GACAGAAAAT chrV:5768378-5768458 66 2.21e-05 AAAAGATCGT GAGACGCA GATAAAG chrV:20424393-20424473 16 2.21e-05 TAATCTAGAA GAGACGCA GGGAAGAGGT chrII:12089742-12089822 54 2.21e-05 AAATAGAGAA GAGACGCA GGCAGTTAGA chrII:11486971-11487051 70 2.21e-05 AAAAATCACG GAGACGCA GAG chrIII:8749685-8749765 56 2.21e-05 ACAATTTGGA GAGACGGA GAGTTGAAAA chrI:10585471-10585551 26 4.44e-05 gagagacagt gagaggga tagagacgta chrIII:13694247-13694327 61 4.44e-05 GAGAGAAAAA GAGAGGCA GATGGTCAAT chrX:2432650-2432730 67 4.44e-05 AGTGAATGAG GAGAGGGA AAAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGSA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15607123-15607203 2.2e-05 15_[+3]_57 chrI:3740496-3740576 2.2e-05 67_[+3]_5 chrV:5991641-5991721 2.2e-05 22_[+3]_50 chrI:6459652-6459732 2.2e-05 37_[+3]_35 chrV:10871512-10871592 2.2e-05 50_[+3]_22 chrII:9937711-9937791 2.2e-05 51_[+3]_21 chrV:5768378-5768458 2.2e-05 65_[+3]_7 chrV:20424393-20424473 2.2e-05 15_[+3]_57 chrII:12089742-12089822 2.2e-05 53_[+3]_19 chrII:11486971-11487051 2.2e-05 69_[+3]_3 chrIII:8749685-8749765 2.2e-05 55_[+3]_17 chrI:10585471-10585551 4.4e-05 25_[+3]_47 chrIII:13694247-13694327 4.4e-05 60_[+3]_12 chrX:2432650-2432730 4.4e-05 66_[+3]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGSA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGACGSA width=8 seqs=14 chrX:15607123-15607203 ( 16) GAGACGGA 1 chrI:3740496-3740576 ( 68) GAGACGGA 1 chrV:5991641-5991721 ( 23) GAGACGCA 1 chrI:6459652-6459732 ( 38) GAGACGGA 1 chrV:10871512-10871592 ( 51) GAGACGGA 1 chrII:9937711-9937791 ( 52) GAGACGCA 1 chrV:5768378-5768458 ( 66) GAGACGCA 1 chrV:20424393-20424473 ( 16) GAGACGCA 1 chrII:12089742-12089822 ( 54) GAGACGCA 1 chrII:11486971-11487051 ( 70) GAGACGCA 1 chrIII:8749685-8749765 ( 56) GAGACGGA 1 chrI:10585471-10585551 ( 26) GAGAGGGA 1 chrIII:13694247-13694327 ( 61) GAGAGGCA 1 chrX:2432650-2432730 ( 67) GAGAGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGSA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1909 E= 6.6e+000 -1045 -1045 222 -1045 179 -1045 -1045 -1045 -1045 -1045 222 -1045 179 -1045 -1045 -1045 -1045 188 0 -1045 -1045 -1045 222 -1045 -1045 123 122 -1045 179 -1045 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGSA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 6.6e+000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.785714 0.214286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGSA MEME-3 regular expression -------------------------------------------------------------------------------- GAGA[CG]G[CG]A -------------------------------------------------------------------------------- Time 19.22 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTGCGTC MEME-4 width = 8 sites = 7 llr = 75 E-value = 3.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a::9::9 probability G :::a:a:1 matrix T a:a:1:a: bits 2.2 * * * 2.0 * * * 1.8 **** ** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTGCGTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:9113028-9113108 14 1.01e-05 CGTTTGTCTA TCTGCGTC TATGGATGTC chrV:19529353-19529433 51 1.01e-05 CACAATGATG TCTGCGTC TCTGGTCTCC chrV:6214005-6214085 16 1.01e-05 TCTGTCAGTA TCTGCGTC TCTTACCACA chrII:7529261-7529341 13 1.01e-05 ATTACAACTT TCTGCGTC TCTAGATCTT chrV:619180-619260 48 1.01e-05 CCATCCTCTC TCTGCGTC TCTTCTCCTC chrV:532157-532237 39 1.01e-05 TGCAATAGTG TCTGCGTC TCTCTTTTCA chrX:12515797-12515877 57 4.74e-05 TTGACCCAAG TCTGTGTG CTCAGCTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:9113028-9113108 1e-05 13_[+4]_59 chrV:19529353-19529433 1e-05 50_[+4]_22 chrV:6214005-6214085 1e-05 15_[+4]_57 chrII:7529261-7529341 1e-05 12_[+4]_60 chrV:619180-619260 1e-05 47_[+4]_25 chrV:532157-532237 1e-05 38_[+4]_34 chrX:12515797-12515877 4.7e-05 56_[+4]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTGCGTC width=8 seqs=7 chrII:9113028-9113108 ( 14) TCTGCGTC 1 chrV:19529353-19529433 ( 51) TCTGCGTC 1 chrV:6214005-6214085 ( 16) TCTGCGTC 1 chrII:7529261-7529341 ( 13) TCTGCGTC 1 chrV:619180-619260 ( 48) TCTGCGTC 1 chrV:532157-532237 ( 39) TCTGCGTC 1 chrX:12515797-12515877 ( 57) TCTGTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1915 E= 3.3e+004 -945 -945 -945 182 -945 223 -945 -945 -945 -945 -945 182 -945 -945 222 -945 -945 201 -945 -98 -945 -945 222 -945 -945 -945 -945 182 -945 201 -59 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.3e+004 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.857143 0.142857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 regular expression -------------------------------------------------------------------------------- TCTGCGTC -------------------------------------------------------------------------------- Time 22.67 secs. ******************************************************************************** ******************************************************************************** MOTIF RTGTGTGT MEME-5 width = 8 sites = 20 llr = 180 E-value = 5.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGTGTGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 4::::::1 pos.-specific C ::1:::21 probability G 6:a:a:8: matrix T 1a:a:a:9 bits 2.2 * 2.0 * * 1.8 ***** 1.6 ****** Relative 1.3 ****** Entropy 1.1 ******* (13.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTGTGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14508914-14508994 34 1.37e-05 AAAtgtgtgt gtgtgtgt gtCCATCTTC chrIII:13763497-13763577 30 1.37e-05 TTAATTGTTC GTGTGTGT AGGTCTTTAC chrIII:12583638-12583718 13 1.37e-05 CAGACATAGT GTGTGTGT GTCTGCGTCT chrI:3682085-3682165 59 1.37e-05 GGGGGTTTTT GTGTGTGT GCGTGCACAG chrV:5065147-5065227 73 1.37e-05 AAAGGGTtgt gtgtgtgt chrII:10549434-10549514 61 1.37e-05 gtgtgtgtgt gtgtgtgt gtgtgtgtgA chrII:6838422-6838502 14 1.37e-05 TTTGTCCTCT GTGTGTGT ATGTGCACAT chrV:6246677-6246757 17 3.22e-05 TCATCATTGT ATGTGTGT CTCCAGTACA chrIV:6083834-6083914 58 3.22e-05 ATGAACACAA ATGTGTGT TGGGTCCAAA chrIV:3234421-3234501 47 3.22e-05 CCGCATCATC ATGTGTGT TTCCGTTTTT chrX:11462210-11462290 24 3.22e-05 CGTAATTCTT ATGTGTGT TTGATTCAAT chrIII:5421544-5421624 73 4.58e-05 TTGAAAGAGA GTGTGTCT chrII:5330300-5330380 36 6.41e-05 ctctgtctct atgtgtct ccatctgtct chrX:6736597-6736677 16 6.41e-05 GAATCGGACG ATGTGTCT CTCATTGTCC chrV:8905793-8905873 22 6.41e-05 CGTGTATCAA ATGTGTCT CTTTTCTCTC chrIV:8530770-8530850 1 7.81e-05 . GTGTGTGA ATGACACAAG chrX:11447888-11447968 55 8.84e-05 CATGGTCTTC GTGTGTGC TTTCACGAGG chrIII:11689446-11689526 43 1.25e-04 AGAGAGATAG TTGTGTGT TATCAATGAT chrV:10729786-10729866 51 1.25e-04 TTTTTATTGA ATGTGTGA GAAACTTAAA chrIV:11433902-11433982 62 1.39e-04 CTCGATTATT GTCTGTGT TTCCCGCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTGTGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14508914-14508994 1.4e-05 33_[+5]_39 chrIII:13763497-13763577 1.4e-05 29_[+5]_43 chrIII:12583638-12583718 1.4e-05 12_[+5]_60 chrI:3682085-3682165 1.4e-05 58_[+5]_14 chrV:5065147-5065227 1.4e-05 72_[+5] chrII:10549434-10549514 1.4e-05 60_[+5]_12 chrII:6838422-6838502 1.4e-05 13_[+5]_59 chrV:6246677-6246757 3.2e-05 16_[+5]_56 chrIV:6083834-6083914 3.2e-05 57_[+5]_15 chrIV:3234421-3234501 3.2e-05 46_[+5]_26 chrX:11462210-11462290 3.2e-05 23_[+5]_49 chrIII:5421544-5421624 4.6e-05 72_[+5] chrII:5330300-5330380 6.4e-05 35_[+5]_37 chrX:6736597-6736677 6.4e-05 15_[+5]_57 chrV:8905793-8905873 6.4e-05 21_[+5]_51 chrIV:8530770-8530850 7.8e-05 [+5]_72 chrX:11447888-11447968 8.8e-05 54_[+5]_18 chrIII:11689446-11689526 0.00013 42_[+5]_30 chrV:10729786-10729866 0.00013 50_[+5]_22 chrIV:11433902-11433982 0.00014 61_[+5]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTGTGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGTGTGT width=8 seqs=20 chrX:14508914-14508994 ( 34) GTGTGTGT 1 chrIII:13763497-13763577 ( 30) GTGTGTGT 1 chrIII:12583638-12583718 ( 13) GTGTGTGT 1 chrI:3682085-3682165 ( 59) GTGTGTGT 1 chrV:5065147-5065227 ( 73) GTGTGTGT 1 chrII:10549434-10549514 ( 61) GTGTGTGT 1 chrII:6838422-6838502 ( 14) GTGTGTGT 1 chrV:6246677-6246757 ( 17) ATGTGTGT 1 chrIV:6083834-6083914 ( 58) ATGTGTGT 1 chrIV:3234421-3234501 ( 47) ATGTGTGT 1 chrX:11462210-11462290 ( 24) ATGTGTGT 1 chrIII:5421544-5421624 ( 73) GTGTGTCT 1 chrII:5330300-5330380 ( 36) ATGTGTCT 1 chrX:6736597-6736677 ( 16) ATGTGTCT 1 chrV:8905793-8905873 ( 22) ATGTGTCT 1 chrIV:8530770-8530850 ( 1) GTGTGTGA 1 chrX:11447888-11447968 ( 55) GTGTGTGC 1 chrIII:11689446-11689526 ( 43) TTGTGTGT 1 chrV:10729786-10729866 ( 51) ATGTGTGA 1 chrIV:11433902-11433982 ( 62) GTCTGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTGTGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7763 E= 5.5e+002 47 -1097 136 -250 -1097 -1097 -1097 182 -1097 -209 214 -1097 -1097 -1097 -1097 182 -1097 -1097 222 -1097 -1097 -1097 -1097 182 -1097 -9 190 -1097 -153 -209 -1097 159 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTGTGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 5.5e+002 0.400000 0.000000 0.550000 0.050000 0.000000 0.000000 0.000000 1.000000 0.000000 0.050000 0.950000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.800000 0.000000 0.100000 0.050000 0.000000 0.850000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTGTGT MEME-5 regular expression -------------------------------------------------------------------------------- [GA]TGTGT[GC]T -------------------------------------------------------------------------------- Time 26.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6836386-6836466 7.86e-02 80 chrIV:3899976-3900056 6.93e-01 80 chrM:13149-13229 9.99e-01 80 chrX:7990443-7990523 1.63e-01 80 chrV:10729786-10729866 1.88e-02 80 chrIII:154360-154440 8.90e-01 80 chrII:6838422-6838502 2.43e-05 13_[+5(1.37e-05)]_59 chrII:6849476-6849556 3.04e-01 80 chrX:3932894-3932974 3.84e-01 80 chrII:915381-915461 9.12e-02 32_[+2(5.84e-05)]_40 chrV:9163126-9163206 1.85e-01 80 chrV:11802562-11802642 2.80e-02 3_[+1(9.84e-05)]_69 chrV:6994109-6994189 5.80e-01 80 chrX:15274214-15274294 3.47e-02 80 chrIV:13919379-13919459 5.71e-01 80 chrII:6026803-6026883 1.19e-02 17_[+2(2.33e-05)]_55 chrM:1839-1919 7.25e-01 80 chrX:11447888-11447968 3.06e-02 54_[+5(8.84e-05)]_18 chrV:8768661-8768741 7.72e-01 80 chrV:18346209-18346289 8.36e-01 80 chrII:2378724-2378804 8.99e-01 80 chrX:12518014-12518094 1.24e-01 80 chrV:8445834-8445914 2.46e-02 69_[+1(3.55e-05)]_3 chrII:6841187-6841267 2.20e-01 80 chrV:15354851-15354931 3.26e-01 80 chrV:13202504-13202584 4.97e-02 80 chrIII:313031-313111 3.64e-01 33_[+1(8.34e-05)]_[+1(8.34e-05)]_7_\ [+1(8.34e-05)]_16 chrIV:3875370-3875450 3.08e-01 80 chrX:15340121-15340201 1.18e-01 80 chrIV:14594384-14594464 2.02e-01 80 chrX:15360744-15360824 3.59e-02 55_[+1(8.34e-05)]_17 chrV:5823130-5823210 8.07e-01 80 chrII:1103858-1103938 6.89e-01 80 chrII:13469299-13469379 1.51e-01 80 chrIII:6159197-6159277 5.66e-01 80 chrV:532157-532237 6.36e-03 38_[+4(1.01e-05)]_34 chrV:3262369-3262449 9.58e-02 80 chrX:6743008-6743088 3.40e-01 80 chrIII:7116832-7116912 2.33e-02 11_[+1(9.84e-05)]_15_[+1(1.51e-05)]_\ 38 chrII:12625822-12625902 6.27e-01 80 chrII:4089367-4089447 4.86e-01 80 chrV:8073315-8073395 7.15e-01 80 chrII:900855-900935 2.37e-01 80 chrM:8470-8550 8.09e-01 80 chrV:381369-381449 7.55e-01 80 chrX:13356608-13356688 2.74e-01 80 chrIV:8463244-8463324 2.06e-01 80 chrII:10549434-10549514 3.74e-02 50_[+5(1.37e-05)]_[+5(1.37e-05)]_\ [+5(1.37e-05)]_6 chrIV:8133690-8133770 3.58e-01 80 chrV:6614539-6614619 3.62e-01 80 chrX:6664173-6664253 2.21e-01 80 chrIII:8749685-8749765 4.15e-03 55_[+3(2.21e-05)]_17 chrII:3786690-3786770 2.32e-01 66_[+1(8.34e-05)]_6 chrIV:6099930-6100010 1.39e-02 80 chrII:6842754-6842834 3.97e-02 56_[+2(4.08e-05)]_16 chrV:5763985-5764065 1.04e-03 29_[+2(2.33e-05)]_43 chrV:5065147-5065227 6.55e-05 28_[+1(5.59e-05)]_34_[+5(1.37e-05)]_\ 2 chrII:6848174-6848254 2.39e-02 80 chrIII:7120652-7120732 4.86e-01 80 chrIV:5607496-5607576 2.09e-01 80 chrIII:7166958-7167038 3.75e-02 80 chrV:15880965-15881045 3.03e-01 80 chrX:3829795-3829875 1.13e-01 80 chrV:5012367-5012447 5.95e-01 80 chrX:3832259-3832339 1.61e-02 80 chrII:1851880-1851960 2.13e-01 80 chrIV:7550003-7550083 2.31e-01 80 chrIV:8793432-8793512 3.14e-01 80 chrV:8905793-8905873 1.86e-03 21_[+5(6.41e-05)]_1_[+2(2.33e-05)]_\ 42 chrIV:8534400-8534480 2.07e-03 80 chrX:13355150-13355230 8.27e-01 80 chrII:6843804-6843884 2.98e-02 80 chrM:5962-6042 1.79e-01 80 chrI:7480266-7480346 1.52e-01 80 chrV:11543706-11543786 4.86e-01 80 chrI:3672749-3672829 5.58e-02 71_[+1(3.55e-05)]_1 chrV:8201367-8201447 2.77e-01 80 chrX:10678176-10678256 6.61e-01 80 chrIII:5938162-5938242 1.30e-02 80 chrI:2587639-2587719 2.24e-03 [+1(1.51e-05)]_72 chrIV:13028701-13028781 2.45e-01 80 chrIV:16024264-16024344 3.01e-03 80 chrI:7477022-7477102 2.08e-02 10_[+1(1.51e-05)]_[+1(1.51e-05)]_54 chrV:10855564-10855644 9.33e-01 80 chrV:17721924-17722004 5.36e-01 80 chrIII:1279311-1279391 5.10e-01 80 chrIII:7141355-7141435 9.98e-01 80 chrX:1395948-1396028 9.26e-01 80 chrI:3822830-3822910 6.60e-03 12_[+2(4.08e-05)]_60 chrX:10772241-10772321 8.12e-01 80 chrII:8818477-8818557 1.79e-01 80 chrM:8234-8314 9.73e-01 80 chrX:2432650-2432730 5.33e-02 66_[+3(4.44e-05)]_6 chrX:8475381-8475461 8.24e-01 80 chrIV:8530770-8530850 2.96e-03 [+5(7.81e-05)]_72 chrX:15276817-15276897 1.78e-03 71_[+2(2.33e-05)]_1 chrIV:5764492-5764572 3.59e-01 80 chrI:3682085-3682165 3.76e-03 58_[+5(1.37e-05)]_14 chrX:12844314-12844394 2.73e-02 9_[+1(5.59e-05)]_49_[+1(9.84e-05)]_\ 6 chrIV:7049843-7049923 1.28e-02 2_[+2(2.33e-05)]_70 chrX:6736597-6736677 2.02e-02 15_[+5(6.41e-05)]_57 chrII:11617886-11617966 4.59e-01 80 chrII:13462187-13462267 1.76e-01 80 chrIV:5778500-5778580 3.59e-01 80 chrX:9225351-9225431 3.14e-03 [+1(1.51e-05)]_[+1(1.51e-05)]_\ [+1(1.51e-05)]_[+1(1.51e-05)]_15_[+3(2.21e-05)]_25 chrII:12185825-12185905 3.93e-01 80 chrV:619180-619260 2.92e-04 47_[+4(1.01e-05)]_[+2(7.16e-05)]_17 chrX:11462210-11462290 1.05e-03 23_[+5(3.22e-05)]_31_[+2(7.16e-05)]_\ 10 chrV:12637384-12637464 6.29e-02 80 chrI:9883743-9883823 1.10e-01 80 chrIII:13694247-13694327 7.43e-04 50_[+1(3.55e-05)]_2_[+3(4.44e-05)]_\ 12 chrV:6275341-6275421 1.96e-01 80 chrII:11486971-11487051 3.36e-02 69_[+3(2.21e-05)]_3 chrX:8623965-8624045 8.74e-01 80 chrII:11928954-11929034 2.04e-02 80 chrIII:5812772-5812852 1.05e-01 80 chrX:14500622-14500702 7.48e-01 80 chrIII:5939795-5939875 4.44e-01 80 chrIV:5593973-5594053 1.22e-01 80 chrV:13371430-13371510 9.99e-01 80 chrX:14506093-14506173 7.97e-03 25_[+2(2.33e-05)]_47 chrX:13358731-13358811 1.61e-01 80 chrII:12089742-12089822 5.09e-03 38_[+1(3.55e-05)]_7_[+3(2.21e-05)]_\ 19 chrX:2569163-2569243 1.15e-01 48_[+3(7.40e-05)]_24 chrX:1456868-1456948 7.40e-01 80 chrIII:6895282-6895362 2.11e-04 48_[+4(1.01e-05)]_24 chrX:12872410-12872490 3.41e-02 33_[+2(4.08e-05)]_39 chrV:10717395-10717475 1.05e-02 33_[+1(5.59e-05)]_39 chrM:2909-2989 6.26e-02 80 chrM:7095-7175 7.91e-01 80 chrX:13360089-13360169 1.30e-01 80 chrI:10585471-10585551 4.15e-03 13_[+1(1.51e-05)]_4_[+3(4.44e-05)]_\ 2_[+3(7.40e-05)]_37 chrX:1478107-1478187 3.21e-02 80 chrV:6276292-6276372 2.12e-01 80 chrIV:10782135-10782215 8.92e-01 80 chrV:5393238-5393318 4.04e-02 12_[+1(1.51e-05)]_60 chrIV:9526156-9526236 2.80e-01 80 chrV:9165276-9165356 2.55e-01 80 chrIV:664252-664332 4.71e-01 80 chrIV:11915852-11915932 5.65e-01 80 chrM:9088-9168 9.15e-01 80 chrV:11532351-11532431 6.73e-03 36_[+1(1.51e-05)]_36 chrX:12878070-12878150 2.65e-01 80 chrX:6338626-6338706 4.07e-02 80 chrX:9337924-9338004 1.38e-01 80 chrM:2070-2150 1.08e-01 80 chrV:12300396-12300476 3.70e-01 80 chrII:9975131-9975211 3.84e-01 80 chrV:20424393-20424473 6.05e-03 15_[+3(2.21e-05)]_38_[+1(5.59e-05)]_\ 11 chrIV:3234421-3234501 1.30e-03 46_[+5(3.22e-05)]_6_[+2(5.84e-05)]_\ 12 chrII:15205510-15205590 3.50e-02 80 chrV:5768378-5768458 1.04e-02 65_[+3(2.21e-05)]_7 chrX:12515797-12515877 2.83e-03 56_[+4(4.74e-05)]_16 chrV:11572997-11573077 2.46e-01 80 chrI:5311877-5311957 4.29e-03 80 chrIII:8733384-8733464 9.39e-02 80 chrI:9097737-9097817 3.71e-02 80 chrV:11799402-11799482 6.37e-01 80 chrV:10002916-10002996 1.87e-02 15_[+1(3.55e-05)]_57 chrII:6827536-6827616 6.74e-02 67_[+2(4.08e-05)]_5 chrX:11710463-11710543 2.03e-01 80 chrII:9937711-9937791 2.39e-04 51_[+3(2.21e-05)]_21 chrIII:7153940-7154020 1.31e-03 1_[+3(7.40e-05)]_71 chrX:10576654-10576734 1.54e-01 80 chrIV:8527707-8527787 1.86e-02 80 chrII:6926648-6926728 1.71e-02 23_[+2(2.33e-05)]_49 chrII:3897924-3898004 2.09e-03 7_[+1(3.55e-05)]_65 chrIII:4284866-4284946 7.06e-02 80 chrX:8029269-8029349 2.00e-01 44_[+2(5.84e-05)]_18_[+2(5.84e-05)]_\ 2 chrIV:6083834-6083914 8.94e-02 57_[+5(3.22e-05)]_15 chrIII:5421544-5421624 3.12e-04 64_[+1(5.59e-05)]_[+5(4.58e-05)] chrV:9740994-9741074 6.27e-01 80 chrV:6876964-6877044 3.97e-01 80 chrX:6750348-6750428 1.65e-01 80 chrX:14602801-14602881 3.39e-01 80 chrIV:3612100-3612180 5.30e-02 80 chrX:8156589-8156669 2.73e-01 80 chrIV:17472310-17472390 2.46e-01 80 chrIV:4028343-4028423 3.14e-01 80 chrV:10871512-10871592 7.53e-02 50_[+3(2.21e-05)]_22 chrII:8742133-8742213 7.59e-01 80 chrII:11619338-11619418 3.53e-01 80 chrIV:5100258-5100338 3.10e-01 80 chrI:3710741-3710821 3.42e-02 80 chrII:5330300-5330380 6.66e-03 35_[+5(6.41e-05)]_37 chrIII:5225048-5225128 1.18e-01 59_[+2(5.84e-05)]_13 chrIII:13059505-13059585 1.10e-02 71_[+1(8.34e-05)]_1 chrV:6246677-6246757 5.96e-04 16_[+5(3.22e-05)]_43_[+2(2.33e-05)]_\ 5 chrV:7415964-7416044 4.61e-02 80 chrV:2672794-2672874 7.45e-02 80 chrIV:11092774-11092854 3.01e-02 80 chrII:6822548-6822628 2.89e-01 80 chrIII:11689446-11689526 1.17e-06 29_[+1(1.51e-05)]_43 chrI:6459652-6459732 2.97e-03 37_[+3(2.21e-05)]_4_[+1(1.51e-05)]_\ 23 chrX:12425553-12425633 2.97e-01 80 chrIII:1926601-1926681 1.24e-01 80 chrIII:7179830-7179910 3.30e-02 48_[+2(2.33e-05)]_24 chrII:7777510-7777590 3.26e-01 80 chrIII:12583638-12583718 1.96e-06 10_[+5(1.37e-05)]_3_[+4(1.01e-05)]_\ 39_[+1(5.59e-05)]_4 chrIII:7189906-7189986 2.44e-01 80 chrII:7529261-7529341 4.74e-04 12_[+4(1.01e-05)]_60 chrX:12500991-12501071 8.21e-01 80 chrIII:13763497-13763577 2.88e-02 29_[+5(1.37e-05)]_43 chrV:6229499-6229579 2.84e-01 80 chrX:15607679-15607759 9.54e-02 80 chrX:6042204-6042284 1.69e-01 41_[+1(3.55e-05)]_31 chrV:5991641-5991721 3.03e-04 22_[+3(2.21e-05)]_26_[+1(5.59e-05)]_\ 16 chrI:4254044-4254124 4.65e-01 80 chrIII:2471981-2472061 5.84e-02 80 chrV:15071393-15071473 2.66e-02 80 chrIV:9196937-9197017 7.15e-03 80 chrX:7306591-7306671 6.23e-01 80 chrIII:2876134-2876214 1.76e-02 17_[+1(5.59e-05)]_55 chrI:8869217-8869297 4.62e-02 80 chrIV:11956501-11956581 2.04e-03 80 chrX:14508103-14508183 3.41e-01 80 chrV:19527689-19527769 2.72e-01 80 chrIII:4015392-4015472 9.61e-01 80 chrI:3740496-3740576 3.02e-04 35_[+1(1.51e-05)]_24_[+3(2.21e-05)]_\ 5 chrIV:9803722-9803802 2.11e-01 80 chrX:7181831-7181911 2.41e-01 80 chrIV:5656118-5656198 7.06e-01 80 chrV:13130601-13130681 1.13e-01 80 chrX:15281549-15281629 3.70e-01 80 chrIII:7162433-7162513 4.09e-02 27_[+2(2.33e-05)]_45 chrIII:13061264-13061344 1.94e-01 80 chrI:6838191-6838271 3.00e-01 80 chrM:4692-4772 5.63e-01 80 chrV:6214005-6214085 3.44e-03 15_[+4(1.01e-05)]_57 chrI:10769843-10769923 1.27e-04 1_[+1(1.51e-05)]_8_[+1(1.51e-05)]_\ [+1(1.51e-05)]_47 chrX:15607123-15607203 3.51e-03 15_[+3(2.21e-05)]_57 chrV:10858568-10858648 3.37e-01 80 chrX:13105100-13105180 2.50e-01 70_[+2(5.84e-05)]_2 chrV:19529353-19529433 4.43e-02 50_[+4(1.01e-05)]_22 chrX:5696317-5696397 1.96e-02 29_[+1(9.84e-05)]_43 chrIII:11185697-11185777 8.00e-02 80 chrX:8546209-8546289 2.15e-03 38_[+1(3.55e-05)]_34 chrII:9113028-9113108 1.24e-04 13_[+4(1.01e-05)]_26_[+1(3.55e-05)]_\ 25 chrX:14508914-14508994 1.80e-05 27_[+5(1.37e-05)]_[+5(1.37e-05)]_37 chrX:14297325-14297405 3.08e-01 80 chrIII:7208060-7208140 6.75e-01 80 chrIV:11433902-11433982 1.57e-03 80 chrX:11339522-11339602 5.88e-02 80 chrI:7056844-7056924 2.60e-01 80 chrII:10851142-10851222 3.12e-03 62_[+1(9.84e-05)]_10 chrII:15263147-15263227 3.83e-01 80 chrV:11533131-11533211 3.00e-02 32_[+1(5.59e-05)]_40 chrM:2283-2363 1.04e-01 80 chrV:14505803-14505883 1.20e-01 80 chrIV:6481238-6481318 5.24e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************