******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/egl-13.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:1414754-1414834 1.0000 80 chrIV:14269045-14269125 1.0000 80 chrIV:5419881-5419961 1.0000 80 chrIV:9575788-9575868 1.0000 80 chrX:17518476-17518556 1.0000 80 chrIII:10579066-10579146 1.0000 80 chrV:5745362-5745442 1.0000 80 chrV:5089948-5090028 1.0000 80 chrV:10699761-10699841 1.0000 80 chrX:12532301-12532381 1.0000 80 chrIII:10389769-10389849 1.0000 80 chrIV:11435096-11435176 1.0000 80 chrX:5988944-5989024 1.0000 80 chrX:11127387-11127467 1.0000 80 chrX:13485969-13486049 1.0000 80 chrII:10970768-10970848 1.0000 80 chrIV:10448025-10448105 1.0000 80 chrIV:5287342-5287422 1.0000 80 chrX:7487714-7487794 1.0000 80 chrX:3140044-3140124 1.0000 80 chrX:6194508-6194588 1.0000 80 chrX:15668838-15668918 1.0000 80 chrV:10177565-10177645 1.0000 80 chrIV:8444147-8444227 1.0000 80 chrX:12513599-12513679 1.0000 80 chrX:15008851-15008931 1.0000 80 chrI:9371932-9372012 1.0000 80 chrIV:7415367-7415447 1.0000 80 chrIV:3247003-3247083 1.0000 80 chrIII:6679474-6679554 1.0000 80 chrV:11997532-11997612 1.0000 80 chrI:8581608-8581688 1.0000 80 chrX:10516269-10516349 1.0000 80 chrIV:17192037-17192117 1.0000 80 chrX:5453285-5453365 1.0000 80 chrX:7131043-7131123 1.0000 80 chrV:6140952-6141032 1.0000 80 chrII:6378862-6378942 1.0000 80 chrV:10835595-10835675 1.0000 80 chrV:8342545-8342625 1.0000 80 chrV:14721995-14722075 1.0000 80 chrII:7487465-7487545 1.0000 80 chrX:5370792-5370872 1.0000 80 chrII:12505595-12505675 1.0000 80 chrX:6706070-6706150 1.0000 80 chrX:15956082-15956162 1.0000 80 chrI:9735398-9735478 1.0000 80 chrI:9705702-9705782 1.0000 80 chrI:13051957-13052037 1.0000 80 chrII:12709026-12709106 1.0000 80 chrIV:11777209-11777289 1.0000 80 chrX:4319123-4319203 1.0000 80 chrV:9901267-9901347 1.0000 80 chrV:8421730-8421810 1.0000 80 chrII:9263908-9263988 1.0000 80 chrV:5741396-5741476 1.0000 80 chrV:4850570-4850650 1.0000 80 chrIII:1922637-1922717 1.0000 80 chrX:12546438-12546518 1.0000 80 chrX:10727298-10727378 1.0000 80 chrI:10754537-10754617 1.0000 80 chrX:10674564-10674644 1.0000 80 chrI:5539983-5540063 1.0000 80 chrIII:3757988-3758068 1.0000 80 chrIV:10507727-10507807 1.0000 80 chrX:5296407-5296487 1.0000 80 chrI:9703103-9703183 1.0000 80 chrIV:466634-466714 1.0000 80 chrX:6945795-6945875 1.0000 80 chrI:9601692-9601772 1.0000 80 chrI:1279420-1279500 1.0000 80 chrI:9768024-9768104 1.0000 80 chrIII:11673228-11673308 1.0000 80 chrX:8801022-8801102 1.0000 80 chrIV:5905728-5905808 1.0000 80 chrX:2596760-2596840 1.0000 80 chrX:15664492-15664572 1.0000 80 chrX:15539479-15539559 1.0000 80 chrIV:11388870-11388950 1.0000 80 chrX:13617070-13617150 1.0000 80 chrV:9186165-9186245 1.0000 80 chrIV:3246154-3246234 1.0000 80 chrV:10862824-10862904 1.0000 80 chrII:7141675-7141755 1.0000 80 chrV:4852144-4852224 1.0000 80 chrII:6745947-6746027 1.0000 80 chrI:6394359-6394439 1.0000 80 chrIII:8229623-8229703 1.0000 80 chrX:12188399-12188479 1.0000 80 chrX:14478359-14478439 1.0000 80 chrX:910515-910595 1.0000 80 chrIII:482910-482990 1.0000 80 chrIV:134211-134291 1.0000 80 chrX:3340051-3340131 1.0000 80 chrI:9792212-9792292 1.0000 80 chrII:7181563-7181643 1.0000 80 chrI:6574244-6574324 1.0000 80 chrIII:8002878-8002958 1.0000 80 chrI:6806400-6806480 1.0000 80 chrIII:11672041-11672121 1.0000 80 chrIII:6352614-6352694 1.0000 80 chrX:12085476-12085556 1.0000 80 chrX:15382185-15382265 1.0000 80 chrI:11140523-11140603 1.0000 80 chrIII:1918665-1918745 1.0000 80 chrII:8059656-8059736 1.0000 80 chrIV:4613631-4613711 1.0000 80 chrX:10763560-10763640 1.0000 80 chrII:10806525-10806605 1.0000 80 chrI:4908201-4908281 1.0000 80 chrX:844835-844915 1.0000 80 chrX:12204496-12204576 1.0000 80 chrIII:11641510-11641590 1.0000 80 chrX:15355724-15355804 1.0000 80 chrX:14562428-14562508 1.0000 80 chrIII:2698910-2698990 1.0000 80 chrX:15478979-15479059 1.0000 80 chrIV:3427714-3427794 1.0000 80 chrI:296300-296380 1.0000 80 chrV:11372373-11372453 1.0000 80 chrII:6464901-6464981 1.0000 80 chrV:9972906-9972986 1.0000 80 chrIV:6514872-6514952 1.0000 80 chrI:7361765-7361845 1.0000 80 chrX:7014837-7014917 1.0000 80 chrIII:8511002-8511082 1.0000 80 chrX:12556990-12557070 1.0000 80 chrIV:10478046-10478126 1.0000 80 chrII:12382822-12382902 1.0000 80 chrV:20780596-20780676 1.0000 80 chrI:14534275-14534355 1.0000 80 chrV:11437470-11437550 1.0000 80 chrV:7884604-7884684 1.0000 80 chrX:15390296-15390376 1.0000 80 chrI:10757582-10757662 1.0000 80 chrV:4464534-4464614 1.0000 80 chrX:7385449-7385529 1.0000 80 chrX:16114069-16114149 1.0000 80 chrIV:1739066-1739146 1.0000 80 chrX:3517336-3517416 1.0000 80 chrX:2078944-2079024 1.0000 80 chrX:12511902-12511982 1.0000 80 chrIII:3675985-3676065 1.0000 80 chrI:4473055-4473135 1.0000 80 chrX:5754636-5754716 1.0000 80 chrX:10010609-10010689 1.0000 80 chrI:13030349-13030429 1.0000 80 chrII:13342398-13342478 1.0000 80 chrIV:11692126-11692206 1.0000 80 chrX:15536153-15536233 1.0000 80 chrX:12669112-12669192 1.0000 80 chrX:12559495-12559575 1.0000 80 chrIII:12557527-12557607 1.0000 80 chrIII:10601017-10601097 1.0000 80 chrV:9270822-9270902 1.0000 80 chrV:12530282-12530362 1.0000 80 chrIII:13717003-13717083 1.0000 80 chrII:10926339-10926419 1.0000 80 chrX:7216749-7216829 1.0000 80 chrIV:7624013-7624093 1.0000 80 chrI:14855726-14855806 1.0000 80 chrIII:6069033-6069113 1.0000 80 chrII:7483487-7483567 1.0000 80 chrI:3823620-3823700 1.0000 80 chrV:1366289-1366369 1.0000 80 chrX:13611774-13611854 1.0000 80 chrI:6394908-6394988 1.0000 80 chrX:12210539-12210619 1.0000 80 chrIII:12615994-12616074 1.0000 80 chrI:6479853-6479933 1.0000 80 chrIV:9179341-9179421 1.0000 80 chrIV:10506208-10506288 1.0000 80 chrIV:10436265-10436345 1.0000 80 chrX:9661829-9661909 1.0000 80 chrIV:13028138-13028218 1.0000 80 chrV:11020253-11020333 1.0000 80 chrIV:11760040-11760120 1.0000 80 chrIII:3977714-3977794 1.0000 80 chrIII:8784711-8784791 1.0000 80 chrX:5383618-5383698 1.0000 80 chrV:7894127-7894207 1.0000 80 chrI:9427847-9427927 1.0000 80 chrII:5334794-5334874 1.0000 80 chrX:5559676-5559756 1.0000 80 chrIII:8391508-8391588 1.0000 80 chrX:3017495-3017575 1.0000 80 chrV:10867784-10867864 1.0000 80 chrX:15264778-15264858 1.0000 80 chrX:7128775-7128855 1.0000 80 chrIV:8941282-8941362 1.0000 80 chrI:10152187-10152267 1.0000 80 chrII:351032-351112 1.0000 80 chrIV:132246-132326 1.0000 80 chrX:600834-600914 1.0000 80 chrV:6244811-6244891 1.0000 80 chrV:7969777-7969857 1.0000 80 chrX:12914410-12914490 1.0000 80 chrX:17613172-17613252 1.0000 80 chrII:14810810-14810890 1.0000 80 chrX:10603861-10603941 1.0000 80 chrX:12200685-12200765 1.0000 80 chrI:9703798-9703878 1.0000 80 chrII:9117980-9118060 1.0000 80 chrI:9372134-9372214 1.0000 80 chrX:5031927-5032007 1.0000 80 chrX:5129598-5129678 1.0000 80 chrI:13007717-13007797 1.0000 80 chrX:17159801-17159881 1.0000 80 chrV:1943582-1943662 1.0000 80 chrIII:3671123-3671203 1.0000 80 chrIV:5435798-5435878 1.0000 80 chrV:9196189-9196269 1.0000 80 chrI:6480885-6480965 1.0000 80 chrX:5084656-5084736 1.0000 80 chrIII:8510020-8510100 1.0000 80 chrIII:3560039-3560119 1.0000 80 chrV:9466529-9466609 1.0000 80 chrII:5068017-5068097 1.0000 80 chrIV:17285423-17285503 1.0000 80 chrV:5556939-5557019 1.0000 80 chrV:16753888-16753968 1.0000 80 chrV:9128759-9128839 1.0000 80 chrIII:6690605-6690685 1.0000 80 chrII:11316750-11316830 1.0000 80 chrIII:8392458-8392538 1.0000 80 chrII:15190142-15190222 1.0000 80 chrIV:14260918-14260998 1.0000 80 chrI:9149338-9149418 1.0000 80 chrV:9465698-9465778 1.0000 80 chrII:2748419-2748499 1.0000 80 chrII:6839091-6839171 1.0000 80 chrIV:10652594-10652674 1.0000 80 chrX:15015618-15015698 1.0000 80 chrI:7398939-7399019 1.0000 80 chrV:5571797-5571877 1.0000 80 chrIII:529990-530070 1.0000 80 chrII:2378771-2378851 1.0000 80 chrII:14548846-14548926 1.0000 80 chrIV:10711051-10711131 1.0000 80 chrIII:6695311-6695391 1.0000 80 chrIII:5334005-5334085 1.0000 80 chrV:9313289-9313369 1.0000 80 chrV:12024513-12024593 1.0000 80 chrII:14832186-14832266 1.0000 80 chrIV:16658930-16659010 1.0000 80 chrIII:4495804-4495884 1.0000 80 chrII:8383067-8383147 1.0000 80 chrX:1121595-1121675 1.0000 80 chrV:8212133-8212213 1.0000 80 chrV:5968744-5968824 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_egl-13/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/egl-13.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.307 C 0.194 G 0.208 T 0.291 Background letter frequencies (from file dataset with add-one prior applied): A 0.307 C 0.194 G 0.208 T 0.291 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTCCGGW MEME-1 width = 8 sites = 39 llr = 337 E-value = 2.4e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCCGGW MEME-1 Description -------------------------------------------------------------------------------- Simplified A :2:::::3 pos.-specific C 2::aa:12 probability G :::::991 matrix T 88a::1:5 bits 2.4 ** 2.1 ** 1.9 *** * 1.7 ***** Relative 1.4 ***** Entropy 1.2 * ***** (12.5 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TTTCCGGT consensus A A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCGGW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5084656-5084736 36 1.17e-05 TCCGTTCAAA TTTCCGGT TTGATAATCG chrV:9196189-9196269 51 1.17e-05 GAGTCTAGCT TTTCCGGT TTGGATTATG chrI:6479853-6479933 42 1.17e-05 TTCATTTTAA TTTCCGGT CGAATGGAGC chrI:14534275-14534355 63 1.17e-05 CACCCTGACT TTTCCGGT CGCGGGAAAT chrII:6464901-6464981 50 1.17e-05 TTCCTCCTGA TTTCCGGT GAAAGAGCTC chrV:14721995-14722075 25 1.17e-05 TAATTCTGTA TTTCCGGT CTGAAAACAC chrX:3140044-3140124 45 1.17e-05 ATTATCGCAA TTTCCGGT CACGCGCAAG chrIV:11435096-11435176 52 1.17e-05 TTCCGTTTCT TTTCCGGT TTGTGATGCC chrIV:14269045-14269125 71 1.17e-05 AGTCATCATG TTTCCGGT AC chrX:12556990-12557070 48 1.95e-05 TATCATCGTG TTTCCGGC GCACTTCCTG chrIV:17192037-17192117 26 1.95e-05 TCCTAATGCA TTTCCGGC TCCGAATTTC chrX:10516269-10516349 62 1.95e-05 ATTAGCGCCA TTTCCGGC ACTCAATCGT chrX:15015618-15015698 54 3.18e-05 CAAGACTCAC TTTCCGGA GTTGCTGAAA chrIV:11760040-11760120 14 3.18e-05 GGGTTTTGCT TTTCCGGA GAAACTGGAA chrX:5453285-5453365 19 3.18e-05 CGATGTCCAA TTTCCGGA ATATAAATTA chrX:6194508-6194588 59 3.18e-05 AAACTTTCTG TTTCCGGA ACAGCAAAAA chrX:10763560-10763640 70 3.96e-05 GCAGCTCAAA CTTCCGGT TCT chrII:7141675-7141755 33 3.96e-05 GACTCCTCCG CTTCCGGT CTCTAATTTC chrV:8342545-8342625 40 3.96e-05 GTAGCGCCTT CTTCCGGT TTTATTATCT chrX:5559676-5559756 16 5.71e-05 GCAGACATTT CTTCCGGC GACCGATAAT chrIV:3246154-3246234 35 5.71e-05 CTGATTCGAA TATCCGGT AGAAGCATAA chrII:6378862-6378942 73 5.71e-05 ATAGAGTGAA TATCCGGT chrI:10152187-10152267 30 6.53e-05 TTAGAATATA CTTCCGGA AGCTTTTGAT chrV:9465698-9465778 43 8.18e-05 CAAGTCCTTT TATCCGGC TTCATCTTCA chrII:351032-351112 50 8.18e-05 CAAGAAAGTT TTTCCGGG ATTAGTTCCC chrIII:2698910-2698990 8 8.18e-05 TGTTGGT TTTCCGGG AAATGCAACT chrI:6480885-6480965 65 9.48e-05 AGAGTGAGCC TATCCGGA AAGGAGCT chrX:15382185-15382265 69 9.48e-05 TGACGTAGCT TATCCGGA AATA chrIII:11672041-11672121 68 9.48e-05 TCAGGGATAA TATCCGGA AAAAA chrI:6806400-6806480 45 9.48e-05 TCAAGCCAAA TATCCGGA GGGTATTCAG chrIII:8229623-8229703 13 1.06e-04 TTTCATCGAA TTTCCGCT CTGACGTCAG chrV:9186165-9186245 25 1.06e-04 CTCTCAGCTG TTTCCGCT CCTCTTAATC chrX:7487714-7487794 52 1.29e-04 TTCGCCCGGA TTTCCTGT TGCGTATTGG chrIII:1918665-1918745 1 1.49e-04 . TTTCCGCA GCCGCGAGAT chrI:1279420-1279500 73 1.60e-04 GGATAATCCT TTTCCTGC chrII:12709026-12709106 48 1.60e-04 GAGGCTCTTT TTTCCTGC GACGTATGCA chrX:17613172-17613252 21 1.88e-04 TGTCCCCACA CATCCGGC GTAGACGGAA chrIII:6069033-6069113 35 1.88e-04 CTGATTTCCA TTTCCTGA ATGGACAGCA chrX:10603861-10603941 13 2.04e-04 GTTGATGAGA CTTCCGCT CACAAATGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCGGW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5084656-5084736 1.2e-05 35_[+1]_37 chrV:9196189-9196269 1.2e-05 50_[+1]_22 chrI:6479853-6479933 1.2e-05 41_[+1]_31 chrI:14534275-14534355 1.2e-05 62_[+1]_10 chrII:6464901-6464981 1.2e-05 49_[+1]_23 chrV:14721995-14722075 1.2e-05 24_[+1]_48 chrX:3140044-3140124 1.2e-05 44_[+1]_28 chrIV:11435096-11435176 1.2e-05 51_[+1]_21 chrIV:14269045-14269125 1.2e-05 70_[+1]_2 chrX:12556990-12557070 1.9e-05 47_[+1]_25 chrIV:17192037-17192117 1.9e-05 25_[+1]_47 chrX:10516269-10516349 1.9e-05 61_[+1]_11 chrX:15015618-15015698 3.2e-05 53_[+1]_19 chrIV:11760040-11760120 3.2e-05 13_[+1]_59 chrX:5453285-5453365 3.2e-05 18_[+1]_54 chrX:6194508-6194588 3.2e-05 58_[+1]_14 chrX:10763560-10763640 4e-05 69_[+1]_3 chrII:7141675-7141755 4e-05 32_[+1]_40 chrV:8342545-8342625 4e-05 39_[+1]_33 chrX:5559676-5559756 5.7e-05 15_[+1]_57 chrIV:3246154-3246234 5.7e-05 34_[+1]_38 chrII:6378862-6378942 5.7e-05 72_[+1] chrI:10152187-10152267 6.5e-05 29_[+1]_43 chrV:9465698-9465778 8.2e-05 42_[+1]_30 chrII:351032-351112 8.2e-05 49_[+1]_23 chrIII:2698910-2698990 8.2e-05 7_[+1]_65 chrI:6480885-6480965 9.5e-05 64_[+1]_8 chrX:15382185-15382265 9.5e-05 68_[+1]_4 chrIII:11672041-11672121 9.5e-05 67_[+1]_5 chrI:6806400-6806480 9.5e-05 44_[+1]_28 chrIII:8229623-8229703 0.00011 12_[+1]_60 chrV:9186165-9186245 0.00011 24_[+1]_48 chrX:7487714-7487794 0.00013 51_[+1]_21 chrIII:1918665-1918745 0.00015 [+1]_72 chrI:1279420-1279500 0.00016 72_[+1] chrII:12709026-12709106 0.00016 47_[+1]_25 chrX:17613172-17613252 0.00019 20_[+1]_52 chrIII:6069033-6069113 0.00019 34_[+1]_38 chrX:10603861-10603941 0.0002 12_[+1]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCGGW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCCGGW width=8 seqs=39 chrX:5084656-5084736 ( 36) TTTCCGGT 1 chrV:9196189-9196269 ( 51) TTTCCGGT 1 chrI:6479853-6479933 ( 42) TTTCCGGT 1 chrI:14534275-14534355 ( 63) TTTCCGGT 1 chrII:6464901-6464981 ( 50) TTTCCGGT 1 chrV:14721995-14722075 ( 25) TTTCCGGT 1 chrX:3140044-3140124 ( 45) TTTCCGGT 1 chrIV:11435096-11435176 ( 52) TTTCCGGT 1 chrIV:14269045-14269125 ( 71) TTTCCGGT 1 chrX:12556990-12557070 ( 48) TTTCCGGC 1 chrIV:17192037-17192117 ( 26) TTTCCGGC 1 chrX:10516269-10516349 ( 62) TTTCCGGC 1 chrX:15015618-15015698 ( 54) TTTCCGGA 1 chrIV:11760040-11760120 ( 14) TTTCCGGA 1 chrX:5453285-5453365 ( 19) TTTCCGGA 1 chrX:6194508-6194588 ( 59) TTTCCGGA 1 chrX:10763560-10763640 ( 70) CTTCCGGT 1 chrII:7141675-7141755 ( 33) CTTCCGGT 1 chrV:8342545-8342625 ( 40) CTTCCGGT 1 chrX:5559676-5559756 ( 16) CTTCCGGC 1 chrIV:3246154-3246234 ( 35) TATCCGGT 1 chrII:6378862-6378942 ( 73) TATCCGGT 1 chrI:10152187-10152267 ( 30) CTTCCGGA 1 chrV:9465698-9465778 ( 43) TATCCGGC 1 chrII:351032-351112 ( 50) TTTCCGGG 1 chrIII:2698910-2698990 ( 8) TTTCCGGG 1 chrI:6480885-6480965 ( 65) TATCCGGA 1 chrX:15382185-15382265 ( 69) TATCCGGA 1 chrIII:11672041-11672121 ( 68) TATCCGGA 1 chrI:6806400-6806480 ( 45) TATCCGGA 1 chrIII:8229623-8229703 ( 13) TTTCCGCT 1 chrV:9186165-9186245 ( 25) TTTCCGCT 1 chrX:7487714-7487794 ( 52) TTTCCTGT 1 chrIII:1918665-1918745 ( 1) TTTCCGCA 1 chrI:1279420-1279500 ( 73) TTTCCTGC 1 chrII:12709026-12709106 ( 48) TTTCCTGC 1 chrX:17613172-17613252 ( 21) CATCCGGC 1 chrIII:6069033-6069113 ( 35) TTTCCTGA 1 chrX:10603861-10603941 ( 13) CTTCCGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCGGW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3267 E= 2.4e-012 -1193 -11 -1193 150 -58 -1193 -1193 145 -1193 -1193 -1193 178 -1193 237 -1193 -1193 -1193 237 -1193 -1193 -1193 -1193 211 -150 -1193 -92 211 -1193 -12 8 -202 67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCGGW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 2.4e-012 0.000000 0.179487 0.000000 0.820513 0.205128 0.000000 0.000000 0.794872 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.897436 0.102564 0.000000 0.102564 0.897436 0.000000 0.282051 0.205128 0.051282 0.461538 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCGGW MEME-1 regular expression -------------------------------------------------------------------------------- T[TA]TCCGG[TAC] -------------------------------------------------------------------------------- Time 9.94 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAAATGA MEME-2 width = 8 sites = 87 llr = 608 E-value = 2.1e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAAATGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3aa92:5 pos.-specific C ::::::21 probability G a7::1:62 matrix T :::::721 bits 2.4 * 2.1 * 1.9 * 1.7 * ** Relative 1.4 * ** Entropy 1.2 ***** (10.1 bits) 0.9 ****** 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GGAAATGA consensus A ATG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAATGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:14810810-14810890 25 2.33e-05 GTCGGAGAGA GGAAATGA CGGAAGGGCA chrIII:8784711-8784791 27 2.33e-05 AGAAGAAATG GGAAATGA AGAGTGGAGA chrIII:1918665-1918745 57 2.33e-05 ACATTCTACT GGAAATGA TTAAGGAGTT chrIV:5905728-5905808 34 2.33e-05 TTTTGATATC GGAAATGA TGTTCAAAAT chrI:9703103-9703183 55 2.33e-05 ACAGAAAACC GGAAATGA TGTAGGTTTT chrI:13051957-13052037 34 2.33e-05 GCCAACTCGA GGAAATGA GAGATTTGTA chrII:12505595-12505675 58 2.33e-05 ATGAGCACTA GGAAATGA GAGCCTGGAT chrV:10835595-10835675 27 2.33e-05 ACGAGCTAGC GGAAATGA TGATGGCACA chrIV:7415367-7415447 25 2.33e-05 GAGCTAATCA GGAAATGA GAAAATGATG chrV:7969777-7969857 24 3.90e-05 TGAAAAGAGA GGAAATGG AATGAAAAAA chrV:11437470-11437550 14 3.90e-05 AAGTGACTCC GGAAATGG GTGCTCACCT chrIV:10507727-10507807 2 3.90e-05 A GGAAATGG GAGTTAGAAA chrX:7131043-7131123 57 3.90e-05 CTTCATTTCT GGAAATGG CAGTTTTATC chrV:12530282-12530362 73 5.37e-05 GTGGGTACAT GGAAATGC chrI:4473055-4473135 23 5.37e-05 AAGTCTGCAC GGAAATGC GGCTTATATG chrX:13617070-13617150 27 5.37e-05 TCAGTCGGAA GGAAATGC AAAAGTTTCT chrI:9735398-9735478 49 5.37e-05 AGCACATTTC GGAAATGC AGAAAACAGG chrX:17159801-17159881 48 7.83e-05 GCCACTTCTT GGAAAAGA CGGAGAACAA chrI:9768024-9768104 29 7.83e-05 AGACAAAAGA GGAAAAGA AACAAATTGA chrV:10867784-10867864 24 1.33e-04 GAAATGACGT GGAAATCA CGTGACTAGC chrIV:10436265-10436345 56 1.33e-04 CGAGCAGACA GGAAATCA TCTACGTCTA chrIV:9179341-9179421 43 1.33e-04 AACCGGATAA GGAAATCA CGAGATCATG chrX:5754636-5754716 43 1.33e-04 CTGAAAATCC GGAAATCA AGCCGGAAGT chrV:4464534-4464614 26 1.33e-04 GAGCATTCCC GGAAATTA CGACACACAC chrI:9371932-9372012 72 1.33e-04 AAACGTGGCA GGAAATTA T chrIII:10389769-10389849 62 1.33e-04 CGCAAGAAAC GGAAATTA AATGATCTTC chrV:5745362-5745442 16 1.33e-04 ACGAAAAGCA GGAAATTA AAAAATTACT chrIII:10579066-10579146 33 1.33e-04 agttgaaaga ggaaatca aaaatagaaA chrIV:5419881-5419961 64 1.33e-04 AGGGAAAAAA GGAAATCA AGTTTTTTC chrV:6244811-6244891 45 1.67e-04 TACATATTTA GAAAATGA GCCGGTGGTT chrX:7128775-7128855 20 1.67e-04 AAAAACAGTT GAAAATGA GGAATAAATC chrI:6394908-6394988 1 1.67e-04 . GAAAATGA CATGATATCA chrIII:11641510-11641590 65 1.67e-04 TTTCAGAAAA GAAAATGA GCACAGCT chrII:8059656-8059736 53 1.67e-04 TCAATTCTTA GAAAATGA CGTTTATGTA chrX:8801022-8801102 14 1.67e-04 CCATTTCCAG GAAAATGA TAATGCTCAA chrX:15008851-15008931 45 1.67e-04 CACGAAGAAG GAAAATGA ATTCTAGGAA chrX:3140044-3140124 9 1.67e-04 AAAATCCG GAAAATGA GCTGGATTAT chrV:9466529-9466609 29 2.05e-04 ACCTGACAAC GGAAGTGA CTTGAGCACG chrII:9117980-9118060 29 2.05e-04 GAAATGAACC GGAAGTGA CGTTGCACTT chrX:15390296-15390376 52 2.05e-04 ATCAGTATAA GGAAATGT GCATCCTTAT chrIV:8444147-8444227 42 2.05e-04 AGCACAATCA GGAAATGT AATTCGGAAG chrIV:9575788-9575868 32 2.05e-04 ATGGATTCTT GGAAATGT GTGGCGAGAA chrI:3823620-3823700 28 2.21e-04 AGCACGAAAG GGAAAAGG AGTCCCTCTC chrIV:466634-466714 31 2.21e-04 ACTACGAAGC GGAAAAGG TTAGAGATGG chrX:12546438-12546518 71 2.21e-04 GTGTTGACTG GGAAAAGG TA chrI:6806400-6806480 24 2.58e-04 CGATACTTCT GGAAATTG CTGTCAAGCC chrIII:482910-482990 34 2.58e-04 CTTGGAAATT GGAAATTG TCATATGACA chrIV:11760040-11760120 29 2.81e-04 GGAGAAACTG GAAAATGG CTCATTTTCA chrI:7361765-7361845 63 2.81e-04 CAAAGGGAAG GAAAATGG GATTAATGTC chrV:14721995-14722075 47 2.81e-04 AAACACATTT GAAAATGG ATTTGGTTTC chrX:17613172-17613252 35 3.07e-04 CGGCGTAGAC GGAAAAGC ATTTTTCGTT chrII:7181563-7181643 59 3.42e-04 ACTGAGAATC GGAAATTC GCTCACTTTT chrV:8421730-8421810 31 3.42e-04 TATCAAATGC GGAAATTC GAATTATGAA chrIII:8510020-8510100 70 3.63e-04 GCGGTAGTAA GAAAATGC AGA chrIII:3560039-3560119 16 4.31e-04 TTTGATGATT GGAAGTGC AATTCTTGGA chrX:15264778-15264858 54 4.31e-04 GGAAGTTGCG GGAAAATA TCCAGGAAGC chrV:7894127-7894207 69 4.31e-04 AAAAATGAGG GGAAAACA TTTA chrX:3517336-3517416 39 4.31e-04 AAACCTTCTA GGAAAACA TAAATTATAC chrX:12513599-12513679 66 4.31e-04 AATTAAAAGA GGAAAATA TTATGTG chrX:11127387-11127467 42 4.31e-04 CGGATTAGAA GGAAAATA AGGAAAACGA chrIII:3671123-3671203 24 4.67e-04 AGCACGCAGA GAAAAAGA GATTAGTTCT chrX:600834-600914 30 4.67e-04 TCTGCAAACG GAAAAAGA ACGAGTTGTG chrI:11140523-11140603 66 4.67e-04 AAAGAAAAAG GAAAAAGA GGGTAAG chrX:910515-910595 43 4.67e-04 cgaagatgag gaaaaaga agaagaagaa chrX:12511902-12511982 9 5.87e-04 TGGGAGTG GGAAGAGA TGCAAAGAAA chrX:844835-844915 73 5.87e-04 GCGACTGGAC GGAAGAGA chrII:9263908-9263988 71 5.87e-04 ACAAGACACC GGAAGAGA TG chrV:5571797-5571877 22 6.75e-04 TTCGCAAATC GGAAATTT CCAATTGTAA chrII:7483487-7483567 67 6.75e-04 CAAGATGACC GGAAATCT TTGGAC chrII:13342398-13342478 59 6.75e-04 AAATTTAATT GGAAATTT CCAAACTTTT chrX:7385449-7385529 38 6.75e-04 AGGGAAAGGG GGAAATCT GCGATTTTTC chrV:5741396-5741476 12 6.75e-04 GATTTGAATA GGAAATCT GAaaaatttg chrI:8581608-8581688 27 6.75e-04 AGCGGGGGAA GGAAGTTA TCAGAAGCTG chrV:1414754-1414834 27 6.75e-04 CATCTCCGGC GGAAATTT GCGTTAACTG chrII:10806525-10806605 20 7.70e-04 GGAGCAGCAC GAAAGTGA CAACTCTCAT chrX:15539479-15539559 69 7.70e-04 GTGTTAAATT GAAAATGT AGCT chrX:5296407-5296487 53 7.70e-04 CTTGAAACTT GGAAAACG AGATTGGCCT chrV:1366289-1366369 32 8.09e-04 AACGAAAAAT GAAAAAGG TGGTGGCTCT chrIII:12557527-12557607 59 8.75e-04 AATTTCAGCG GAAAATTG ACATTCTGTC chrX:10010609-10010689 11 8.75e-04 AACTCAATAC GGAAGAGG GTTGAAACCG chrIV:3427714-3427794 34 8.75e-04 AGAATTCTTG GAAAATTG GGCAGAATTC chrIII:4495804-4495884 45 8.99e-04 CTAATTCGTC GGAAGTCG TTTTATCAAT chrX:15382185-15382265 48 8.99e-04 TTTCAGCTCA GGAAGTTG TACTGACGTA chrX:5988944-5989024 55 8.99e-04 CGATCAGGAA GGAAGTTG GATCGCAGAT chrIII:8391508-8391588 36 1.04e-03 AAGCCAATGA GAAAATTC TAATTTATGT chrV:4850570-4850650 32 1.04e-03 TCATCTTCAC GAAAATCC CATCTTACAA chrII:11316750-11316830 25 1.07e-03 AATGATAGAC GGAAACGA TGAGTTTCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAATGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:14810810-14810890 2.3e-05 24_[+2]_48 chrIII:8784711-8784791 2.3e-05 26_[+2]_46 chrIII:1918665-1918745 2.3e-05 56_[+2]_16 chrIV:5905728-5905808 2.3e-05 33_[+2]_39 chrI:9703103-9703183 2.3e-05 54_[+2]_18 chrI:13051957-13052037 2.3e-05 33_[+2]_39 chrII:12505595-12505675 2.3e-05 57_[+2]_15 chrV:10835595-10835675 2.3e-05 26_[+2]_46 chrIV:7415367-7415447 2.3e-05 24_[+2]_48 chrV:7969777-7969857 3.9e-05 23_[+2]_49 chrV:11437470-11437550 3.9e-05 13_[+2]_59 chrIV:10507727-10507807 3.9e-05 1_[+2]_71 chrX:7131043-7131123 3.9e-05 56_[+2]_16 chrV:12530282-12530362 5.4e-05 72_[+2] chrI:4473055-4473135 5.4e-05 22_[+2]_50 chrX:13617070-13617150 5.4e-05 26_[+2]_46 chrI:9735398-9735478 5.4e-05 48_[+2]_24 chrX:17159801-17159881 7.8e-05 47_[+2]_25 chrI:9768024-9768104 7.8e-05 28_[+2]_44 chrV:10867784-10867864 0.00013 23_[+2]_49 chrIV:10436265-10436345 0.00013 55_[+2]_17 chrIV:9179341-9179421 0.00013 42_[+2]_30 chrX:5754636-5754716 0.00013 42_[+2]_30 chrV:4464534-4464614 0.00013 25_[+2]_47 chrI:9371932-9372012 0.00013 71_[+2]_1 chrIII:10389769-10389849 0.00013 61_[+2]_11 chrV:5745362-5745442 0.00013 15_[+2]_57 chrIII:10579066-10579146 0.00013 32_[+2]_40 chrIV:5419881-5419961 0.00013 63_[+2]_9 chrV:6244811-6244891 0.00017 44_[+2]_28 chrX:7128775-7128855 0.00017 19_[+2]_53 chrI:6394908-6394988 0.00017 [+2]_72 chrIII:11641510-11641590 0.00017 64_[+2]_8 chrII:8059656-8059736 0.00017 52_[+2]_20 chrX:8801022-8801102 0.00017 13_[+2]_59 chrX:15008851-15008931 0.00017 44_[+2]_28 chrX:3140044-3140124 0.00017 8_[+2]_64 chrV:9466529-9466609 0.0002 28_[+2]_44 chrII:9117980-9118060 0.0002 28_[+2]_44 chrX:15390296-15390376 0.0002 51_[+2]_21 chrIV:8444147-8444227 0.0002 41_[+2]_31 chrIV:9575788-9575868 0.0002 31_[+2]_41 chrI:3823620-3823700 0.00022 27_[+2]_45 chrIV:466634-466714 0.00022 30_[+2]_42 chrX:12546438-12546518 0.00022 70_[+2]_2 chrI:6806400-6806480 0.00026 23_[+2]_49 chrIII:482910-482990 0.00026 33_[+2]_39 chrIV:11760040-11760120 0.00028 28_[+2]_44 chrI:7361765-7361845 0.00028 62_[+2]_10 chrV:14721995-14722075 0.00028 46_[+2]_26 chrX:17613172-17613252 0.00031 34_[+2]_38 chrII:7181563-7181643 0.00034 58_[+2]_14 chrV:8421730-8421810 0.00034 30_[+2]_42 chrIII:8510020-8510100 0.00036 69_[+2]_3 chrIII:3560039-3560119 0.00043 15_[+2]_57 chrX:15264778-15264858 0.00043 53_[+2]_19 chrV:7894127-7894207 0.00043 68_[+2]_4 chrX:3517336-3517416 0.00043 38_[+2]_34 chrX:12513599-12513679 0.00043 65_[+2]_7 chrX:11127387-11127467 0.00043 41_[+2]_31 chrIII:3671123-3671203 0.00047 23_[+2]_49 chrX:600834-600914 0.00047 29_[+2]_43 chrI:11140523-11140603 0.00047 65_[+2]_7 chrX:910515-910595 0.00047 42_[+2]_30 chrX:12511902-12511982 0.00059 8_[+2]_64 chrX:844835-844915 0.00059 72_[+2] chrII:9263908-9263988 0.00059 70_[+2]_2 chrV:5571797-5571877 0.00067 21_[+2]_51 chrII:7483487-7483567 0.00067 66_[+2]_6 chrII:13342398-13342478 0.00067 58_[+2]_14 chrX:7385449-7385529 0.00067 37_[+2]_35 chrV:5741396-5741476 0.00067 11_[+2]_61 chrI:8581608-8581688 0.00067 26_[+2]_46 chrV:1414754-1414834 0.00067 26_[+2]_46 chrII:10806525-10806605 0.00077 19_[+2]_53 chrX:15539479-15539559 0.00077 68_[+2]_4 chrX:5296407-5296487 0.00077 52_[+2]_20 chrV:1366289-1366369 0.00081 31_[+2]_41 chrIII:12557527-12557607 0.00087 58_[+2]_14 chrX:10010609-10010689 0.00087 10_[+2]_62 chrIV:3427714-3427794 0.00087 33_[+2]_39 chrIII:4495804-4495884 0.0009 44_[+2]_28 chrX:15382185-15382265 0.0009 47_[+2]_25 chrX:5988944-5989024 0.0009 54_[+2]_18 chrIII:8391508-8391588 0.001 35_[+2]_37 chrV:4850570-4850650 0.001 31_[+2]_41 chrII:11316750-11316830 0.0011 24_[+2]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAATGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAAATGA width=8 seqs=87 chrII:14810810-14810890 ( 25) GGAAATGA 1 chrIII:8784711-8784791 ( 27) GGAAATGA 1 chrIII:1918665-1918745 ( 57) GGAAATGA 1 chrIV:5905728-5905808 ( 34) GGAAATGA 1 chrI:9703103-9703183 ( 55) GGAAATGA 1 chrI:13051957-13052037 ( 34) GGAAATGA 1 chrII:12505595-12505675 ( 58) GGAAATGA 1 chrV:10835595-10835675 ( 27) GGAAATGA 1 chrIV:7415367-7415447 ( 25) GGAAATGA 1 chrV:7969777-7969857 ( 24) GGAAATGG 1 chrV:11437470-11437550 ( 14) GGAAATGG 1 chrIV:10507727-10507807 ( 2) GGAAATGG 1 chrX:7131043-7131123 ( 57) GGAAATGG 1 chrV:12530282-12530362 ( 73) GGAAATGC 1 chrI:4473055-4473135 ( 23) GGAAATGC 1 chrX:13617070-13617150 ( 27) GGAAATGC 1 chrI:9735398-9735478 ( 49) GGAAATGC 1 chrX:17159801-17159881 ( 48) GGAAAAGA 1 chrI:9768024-9768104 ( 29) GGAAAAGA 1 chrV:10867784-10867864 ( 24) GGAAATCA 1 chrIV:10436265-10436345 ( 56) GGAAATCA 1 chrIV:9179341-9179421 ( 43) GGAAATCA 1 chrX:5754636-5754716 ( 43) GGAAATCA 1 chrV:4464534-4464614 ( 26) GGAAATTA 1 chrI:9371932-9372012 ( 72) GGAAATTA 1 chrIII:10389769-10389849 ( 62) GGAAATTA 1 chrV:5745362-5745442 ( 16) GGAAATTA 1 chrIII:10579066-10579146 ( 33) GGAAATCA 1 chrIV:5419881-5419961 ( 64) GGAAATCA 1 chrV:6244811-6244891 ( 45) GAAAATGA 1 chrX:7128775-7128855 ( 20) GAAAATGA 1 chrI:6394908-6394988 ( 1) GAAAATGA 1 chrIII:11641510-11641590 ( 65) GAAAATGA 1 chrII:8059656-8059736 ( 53) GAAAATGA 1 chrX:8801022-8801102 ( 14) GAAAATGA 1 chrX:15008851-15008931 ( 45) GAAAATGA 1 chrX:3140044-3140124 ( 9) GAAAATGA 1 chrV:9466529-9466609 ( 29) GGAAGTGA 1 chrII:9117980-9118060 ( 29) GGAAGTGA 1 chrX:15390296-15390376 ( 52) GGAAATGT 1 chrIV:8444147-8444227 ( 42) GGAAATGT 1 chrIV:9575788-9575868 ( 32) GGAAATGT 1 chrI:3823620-3823700 ( 28) GGAAAAGG 1 chrIV:466634-466714 ( 31) GGAAAAGG 1 chrX:12546438-12546518 ( 71) GGAAAAGG 1 chrI:6806400-6806480 ( 24) GGAAATTG 1 chrIII:482910-482990 ( 34) GGAAATTG 1 chrIV:11760040-11760120 ( 29) GAAAATGG 1 chrI:7361765-7361845 ( 63) GAAAATGG 1 chrV:14721995-14722075 ( 47) GAAAATGG 1 chrX:17613172-17613252 ( 35) GGAAAAGC 1 chrII:7181563-7181643 ( 59) GGAAATTC 1 chrV:8421730-8421810 ( 31) GGAAATTC 1 chrIII:8510020-8510100 ( 70) GAAAATGC 1 chrIII:3560039-3560119 ( 16) GGAAGTGC 1 chrX:15264778-15264858 ( 54) GGAAAATA 1 chrV:7894127-7894207 ( 69) GGAAAACA 1 chrX:3517336-3517416 ( 39) GGAAAACA 1 chrX:12513599-12513679 ( 66) GGAAAATA 1 chrX:11127387-11127467 ( 42) GGAAAATA 1 chrIII:3671123-3671203 ( 24) GAAAAAGA 1 chrX:600834-600914 ( 30) GAAAAAGA 1 chrI:11140523-11140603 ( 66) GAAAAAGA 1 chrX:910515-910595 ( 43) GAAAAAGA 1 chrX:12511902-12511982 ( 9) GGAAGAGA 1 chrX:844835-844915 ( 73) GGAAGAGA 1 chrII:9263908-9263988 ( 71) GGAAGAGA 1 chrV:5571797-5571877 ( 22) GGAAATTT 1 chrII:7483487-7483567 ( 67) GGAAATCT 1 chrII:13342398-13342478 ( 59) GGAAATTT 1 chrX:7385449-7385529 ( 38) GGAAATCT 1 chrV:5741396-5741476 ( 12) GGAAATCT 1 chrI:8581608-8581688 ( 27) GGAAGTTA 1 chrV:1414754-1414834 ( 27) GGAAATTT 1 chrII:10806525-10806605 ( 20) GAAAGTGA 1 chrX:15539479-15539559 ( 69) GAAAATGT 1 chrX:5296407-5296487 ( 53) GGAAAACG 1 chrV:1366289-1366369 ( 32) GAAAAAGG 1 chrIII:12557527-12557607 ( 59) GAAAATTG 1 chrX:10010609-10010689 ( 11) GGAAGAGG 1 chrIV:3427714-3427794 ( 34) GAAAATTG 1 chrIII:4495804-4495884 ( 45) GGAAGTCG 1 chrX:15382185-15382265 ( 48) GGAAGTTG 1 chrX:5988944-5989024 ( 55) GGAAGTTG 1 chrIII:8391508-8391588 ( 36) GAAAATTC 1 chrV:4850570-4850650 ( 32) GAAAATCC 1 chrII:11316750-11316830 ( 25) GGAAACGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAATGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.23674 E= 2.1e-012 -1309 -1309 227 -1309 -22 -1309 182 -1309 170 -1309 -1309 -1309 170 -1309 -1309 -1309 149 -1309 -59 -1309 -35 -407 -1309 136 -1309 -27 155 -34 78 -61 14 -134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAATGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 87 E= 2.1e-012 0.000000 0.000000 1.000000 0.000000 0.264368 0.000000 0.735632 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.862069 0.000000 0.137931 0.000000 0.241379 0.011494 0.000000 0.747126 0.000000 0.160920 0.609195 0.229885 0.528736 0.126437 0.229885 0.114943 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAATGA MEME-2 regular expression -------------------------------------------------------------------------------- G[GA]AAA[TA][GT][AG] -------------------------------------------------------------------------------- Time 15.61 secs. ******************************************************************************** ******************************************************************************** MOTIF KYTTTYTC MEME-3 width = 8 sites = 47 llr = 363 E-value = 3.6e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif KYTTTYTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2::::::: pos.-specific C :5::36:a probability G 3::::::: matrix T 55aa74a: bits 2.4 2.1 * 1.9 ** ** 1.7 ** ** Relative 1.4 ** ** Entropy 1.2 ******* (11.1 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTTTCTC consensus GT CT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYTTTYTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:132246-132326 26 1.52e-05 TTGGCTCTTC TCTTTCTC TCCATGTGCT chrI:3823620-3823700 57 2.61e-05 TTTTCGCTCA GCTTTCTC TTATTCCCGA chrII:12382822-12382902 6 2.61e-05 GCTCG GCTTTCTC TGCGTCTCGC chrI:10754537-10754617 67 2.61e-05 GATGTTATAA GCTTTCTC CGTAAT chrIII:10579066-10579146 56 2.61e-05 agaaACTTCT GCTTTCTC TCTATCTGAG chrII:15190142-15190222 4 5.91e-05 tct tcttcctc catctttctt chrIII:8392458-8392538 10 5.91e-05 CACAAGACC TTTTTCTC ATGTGCTCTG chrIV:5435798-5435878 3 5.91e-05 AG TTTTTCTC CTCTTTAAAT chrX:12200685-12200765 49 5.91e-05 TTTCACATCA TTTTTCTC GATTTCCTCT chrX:12210539-12210619 44 5.91e-05 TAATTATGTC TTTTTCTC GTGTCATCGC chrIV:6514872-6514952 52 5.91e-05 GAGTCTTTCC TTTTTCTC CAAGCATTTC chrI:4908201-4908281 13 5.91e-05 TTAACATCTC TCTTCCTC TTTCCAATTT chrIII:8002878-8002958 20 5.91e-05 GTCCCACTTA TTTTTCTC CCACACTTAA chrX:15668838-15668918 2 5.91e-05 A TTTTTCTC CGTTTCCCAA chrIV:5287342-5287422 53 5.91e-05 TACGTCATTT TTTTTCTC GGAATTTTCA chrI:9149338-9149418 16 8.27e-05 CTTTTCTTTG GTTTTCTC AATTCTCCGT chrIV:17285423-17285503 20 8.27e-05 TGTTCGTCAG GTTTTCTC CAGCTTTATA chrI:9372134-9372214 55 8.27e-05 TGTACTTGCC GTTTTCTC TGGTATTTTA chrII:6839091-6839171 37 1.06e-04 GTCGTCGACT TCTTTTTC TTGGCCTCCC chrI:6480885-6480965 41 1.06e-04 CCACTGTCAC TCTTTTTC CATGAAAGAG chrII:12505595-12505675 6 1.06e-04 AATTT TCTTTTTC TGCGACGTGA chrIV:7415367-7415447 69 1.06e-04 TTTTTCTTAG TCTTTTTC TATT chrX:10674564-10674644 4 1.38e-04 ctc actttctc tctctctctc chrX:17613172-17613252 2 1.53e-04 C TTTTCCTC GTGTCCCCAC chrI:6574244-6574324 60 1.64e-04 CCATCTTTTC GTTTCCTC AATCCAAATT chrIII:8510020-8510100 48 2.14e-04 TTCGTCGACG TCTTCTTC CTTGGCGGTA chrI:6479853-6479933 27 2.14e-04 ATTTGCTCTT TTTTTTTC ATTTTAATTT chrV:4852144-4852224 66 2.14e-04 GAACTTTCTT TTTTTTTC AATTTCT chrII:2748419-2748499 57 2.49e-04 GTAACGGACA GCTTCTTC TCCAAATTCT chrII:14810810-14810890 71 2.49e-04 TCTTTTTTTT GCTTCTTC GC chrIV:8941282-8941362 72 2.49e-04 TGGAATTTCC GTTTTTTC T chrX:2078944-2079024 20 2.49e-04 GAAAACTTAC GCTTCTTC CATTAATAAC chrIV:4613631-4613711 66 2.49e-04 TTGAGTCAGT GTTTTTTC ATGGCTC chrIV:5419881-5419961 73 2.49e-04 AGGAAATCAA GTTTTTTC chrIII:6069033-6069113 61 2.84e-04 CAAAATAATC ACTTCCTC CGTCTAGATA chrX:2596760-2596840 6 2.84e-04 ATTGC ATTTTCTC AGAATTACTC chrII:12709026-12709106 1 2.84e-04 . ACTTCCTC TATAGGAGCT chrI:14855726-14855806 46 3.08e-04 ATACTCCAAA ACTTTTTC ACGATGAGCA chrII:13342398-13342478 71 3.08e-04 AAATTTCCAA ACTTTTTC GA chrV:11372373-11372453 71 3.08e-04 GAGCGAGAAG ACTTTTTC AA chrII:7181563-7181643 71 3.08e-04 AAATTCGCTC ACTTTTTC CC chrX:11127387-11127467 59 3.08e-04 AAGGAAAACG ACTTTTTC GGAAATAGTT chrI:7398939-7399019 9 3.31e-04 CTTCACTA TTTTCTTC CAATCTTCTC chrX:5453285-5453365 2 3.31e-04 A TTTTCTTC GATGTCCAAT chrII:6464901-6464981 38 3.63e-04 TTTACACCGC ATTTCCTC CTGATTTCCG chrII:5334794-5334874 12 4.79e-04 TTGAAGGTAA GCTTTCTT AGAATTTCTG chrIII:6690605-6690685 70 5.28e-04 CTTTTGCCCT TTTTTCTT GTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYTTTYTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:132246-132326 1.5e-05 25_[+3]_47 chrI:3823620-3823700 2.6e-05 56_[+3]_16 chrII:12382822-12382902 2.6e-05 5_[+3]_67 chrI:10754537-10754617 2.6e-05 66_[+3]_6 chrIII:10579066-10579146 2.6e-05 55_[+3]_17 chrII:15190142-15190222 5.9e-05 3_[+3]_69 chrIII:8392458-8392538 5.9e-05 9_[+3]_63 chrIV:5435798-5435878 5.9e-05 2_[+3]_70 chrX:12200685-12200765 5.9e-05 48_[+3]_24 chrX:12210539-12210619 5.9e-05 43_[+3]_29 chrIV:6514872-6514952 5.9e-05 51_[+3]_21 chrI:4908201-4908281 5.9e-05 12_[+3]_60 chrIII:8002878-8002958 5.9e-05 19_[+3]_53 chrX:15668838-15668918 5.9e-05 1_[+3]_71 chrIV:5287342-5287422 5.9e-05 52_[+3]_20 chrI:9149338-9149418 8.3e-05 15_[+3]_57 chrIV:17285423-17285503 8.3e-05 19_[+3]_53 chrI:9372134-9372214 8.3e-05 54_[+3]_18 chrII:6839091-6839171 0.00011 36_[+3]_36 chrI:6480885-6480965 0.00011 40_[+3]_32 chrII:12505595-12505675 0.00011 5_[+3]_67 chrIV:7415367-7415447 0.00011 68_[+3]_4 chrX:10674564-10674644 0.00014 3_[+3]_69 chrX:17613172-17613252 0.00015 1_[+3]_71 chrI:6574244-6574324 0.00016 59_[+3]_13 chrIII:8510020-8510100 0.00021 47_[+3]_25 chrI:6479853-6479933 0.00021 26_[+3]_46 chrV:4852144-4852224 0.00021 65_[+3]_7 chrII:2748419-2748499 0.00025 56_[+3]_16 chrII:14810810-14810890 0.00025 70_[+3]_2 chrIV:8941282-8941362 0.00025 71_[+3]_1 chrX:2078944-2079024 0.00025 19_[+3]_53 chrIV:4613631-4613711 0.00025 65_[+3]_7 chrIV:5419881-5419961 0.00025 72_[+3] chrIII:6069033-6069113 0.00028 60_[+3]_12 chrX:2596760-2596840 0.00028 5_[+3]_67 chrII:12709026-12709106 0.00028 [+3]_72 chrI:14855726-14855806 0.00031 45_[+3]_27 chrII:13342398-13342478 0.00031 70_[+3]_2 chrV:11372373-11372453 0.00031 70_[+3]_2 chrII:7181563-7181643 0.00031 70_[+3]_2 chrX:11127387-11127467 0.00031 58_[+3]_14 chrI:7398939-7399019 0.00033 8_[+3]_64 chrX:5453285-5453365 0.00033 1_[+3]_71 chrII:6464901-6464981 0.00036 37_[+3]_35 chrII:5334794-5334874 0.00048 11_[+3]_61 chrIII:6690605-6690685 0.00053 69_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYTTTYTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KYTTTYTC width=8 seqs=47 chrIV:132246-132326 ( 26) TCTTTCTC 1 chrI:3823620-3823700 ( 57) GCTTTCTC 1 chrII:12382822-12382902 ( 6) GCTTTCTC 1 chrI:10754537-10754617 ( 67) GCTTTCTC 1 chrIII:10579066-10579146 ( 56) GCTTTCTC 1 chrII:15190142-15190222 ( 4) TCTTCCTC 1 chrIII:8392458-8392538 ( 10) TTTTTCTC 1 chrIV:5435798-5435878 ( 3) TTTTTCTC 1 chrX:12200685-12200765 ( 49) TTTTTCTC 1 chrX:12210539-12210619 ( 44) TTTTTCTC 1 chrIV:6514872-6514952 ( 52) TTTTTCTC 1 chrI:4908201-4908281 ( 13) TCTTCCTC 1 chrIII:8002878-8002958 ( 20) TTTTTCTC 1 chrX:15668838-15668918 ( 2) TTTTTCTC 1 chrIV:5287342-5287422 ( 53) TTTTTCTC 1 chrI:9149338-9149418 ( 16) GTTTTCTC 1 chrIV:17285423-17285503 ( 20) GTTTTCTC 1 chrI:9372134-9372214 ( 55) GTTTTCTC 1 chrII:6839091-6839171 ( 37) TCTTTTTC 1 chrI:6480885-6480965 ( 41) TCTTTTTC 1 chrII:12505595-12505675 ( 6) TCTTTTTC 1 chrIV:7415367-7415447 ( 69) TCTTTTTC 1 chrX:10674564-10674644 ( 4) ACTTTCTC 1 chrX:17613172-17613252 ( 2) TTTTCCTC 1 chrI:6574244-6574324 ( 60) GTTTCCTC 1 chrIII:8510020-8510100 ( 48) TCTTCTTC 1 chrI:6479853-6479933 ( 27) TTTTTTTC 1 chrV:4852144-4852224 ( 66) TTTTTTTC 1 chrII:2748419-2748499 ( 57) GCTTCTTC 1 chrII:14810810-14810890 ( 71) GCTTCTTC 1 chrIV:8941282-8941362 ( 72) GTTTTTTC 1 chrX:2078944-2079024 ( 20) GCTTCTTC 1 chrIV:4613631-4613711 ( 66) GTTTTTTC 1 chrIV:5419881-5419961 ( 73) GTTTTTTC 1 chrIII:6069033-6069113 ( 61) ACTTCCTC 1 chrX:2596760-2596840 ( 6) ATTTTCTC 1 chrII:12709026-12709106 ( 1) ACTTCCTC 1 chrI:14855726-14855806 ( 46) ACTTTTTC 1 chrII:13342398-13342478 ( 71) ACTTTTTC 1 chrV:11372373-11372453 ( 71) ACTTTTTC 1 chrII:7181563-7181643 ( 71) ACTTTTTC 1 chrX:11127387-11127467 ( 59) ACTTTTTC 1 chrI:7398939-7399019 ( 9) TTTTCTTC 1 chrX:5453285-5453365 ( 2) TTTTCTTC 1 chrII:6464901-6464981 ( 38) ATTTCCTC 1 chrII:5334794-5334874 ( 12) GCTTTCTT 1 chrIII:6690605-6690685 ( 70) TTTTTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYTTTYTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1725 E= 3.6e-001 -53 -1220 62 69 -1220 140 -1220 75 -1220 -1220 -1220 178 -1220 -1220 -1220 178 -1220 52 -1220 131 -1220 157 -1220 55 -1220 -1220 -1220 178 -1220 231 -1220 -277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYTTTYTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 3.6e-001 0.212766 0.000000 0.319149 0.468085 0.000000 0.510638 0.000000 0.489362 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.276596 0.000000 0.723404 0.000000 0.574468 0.000000 0.425532 0.000000 0.000000 0.000000 1.000000 0.000000 0.957447 0.000000 0.042553 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYTTTYTC MEME-3 regular expression -------------------------------------------------------------------------------- [TGA][CT]TT[TC][CT]TC -------------------------------------------------------------------------------- Time 19.19 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCCCCGT MEME-4 width = 8 sites = 10 llr = 105 E-value = 2.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCCCCGT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::1: pos.-specific C a:aaaa23 probability G ::::::5: matrix T :a::::27 bits 2.4 * **** 2.1 * **** 1.9 ****** 1.7 ****** Relative 1.4 ****** Entropy 1.2 ****** * (15.1 bits) 0.9 ****** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTCCCCGT consensus CC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCGT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:6839091-6839171 50 4.84e-06 TTTTCTTGGC CTCCCCGT CATATGACGC chrIV:6514872-6514952 26 4.84e-06 CAATCATCAT CTCCCCGT CGGGCCATGA chrI:6574244-6574324 30 4.84e-06 TTTAGCTGCT CTCCCCGT TTCGCTTTCT chrIII:12615994-12616074 25 8.07e-06 TAAACAAGTG CTCCCCGC TCCGACGACG chrX:14478359-14478439 53 8.07e-06 AGTATGTAAG CTCCCCGC ACTCTGAGCA chrIV:132246-132326 48 1.26e-05 TGTGCTCCGG CTCCCCCT CCTcacactc chrIII:3675985-3676065 10 2.24e-05 CTTTTTCGC CTCCCCTT TCCTTCTCAA chrX:2596760-2596840 37 2.24e-05 TTCACGCTCC CTCCCCCC AAAAAATTTT chrX:6706070-6706150 8 2.24e-05 AGTATTA CTCCCCTT CAGCTAACTT chrIII:11673228-11673308 50 3.40e-05 GGCACACATA CTCCCCAT CACATTATCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCGT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6839091-6839171 4.8e-06 49_[+4]_23 chrIV:6514872-6514952 4.8e-06 25_[+4]_47 chrI:6574244-6574324 4.8e-06 29_[+4]_43 chrIII:12615994-12616074 8.1e-06 24_[+4]_48 chrX:14478359-14478439 8.1e-06 52_[+4]_20 chrIV:132246-132326 1.3e-05 47_[+4]_25 chrIII:3675985-3676065 2.2e-05 9_[+4]_63 chrX:2596760-2596840 2.2e-05 36_[+4]_36 chrX:6706070-6706150 2.2e-05 7_[+4]_65 chrIII:11673228-11673308 3.4e-05 49_[+4]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCGT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCCCCGT width=8 seqs=10 chrII:6839091-6839171 ( 50) CTCCCCGT 1 chrIV:6514872-6514952 ( 26) CTCCCCGT 1 chrI:6574244-6574324 ( 30) CTCCCCGT 1 chrIII:12615994-12616074 ( 25) CTCCCCGC 1 chrX:14478359-14478439 ( 53) CTCCCCGC 1 chrIV:132246-132326 ( 48) CTCCCCCT 1 chrIII:3675985-3676065 ( 10) CTCCCCTT 1 chrX:2596760-2596840 ( 37) CTCCCCCC 1 chrX:6706070-6706150 ( 8) CTCCCCTT 1 chrIII:11673228-11673308 ( 50) CTCCCCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCGT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7767 E= 2.0e+002 -997 237 -997 -997 -997 -997 -997 178 -997 237 -997 -997 -997 237 -997 -997 -997 237 -997 -997 -997 237 -997 -997 -162 5 126 -54 -997 63 -997 127 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCGT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.0e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.200000 0.500000 0.200000 0.000000 0.300000 0.000000 0.700000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCGT MEME-4 regular expression -------------------------------------------------------------------------------- CTCCCC[GCT][TC] -------------------------------------------------------------------------------- Time 22.65 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCCAAGA MEME-5 width = 8 sites = 14 llr = 137 E-value = 2.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCCAAGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::aa:a pos.-specific C ::6a:::: probability G ::2:::a: matrix T aa2::::: bits 2.4 * * 2.1 * * 1.9 ** * * 1.7 ** ***** Relative 1.4 ** ***** Entropy 1.2 ** ***** (14.1 bits) 0.9 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCCAAGA consensus G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCAAGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:8212133-8212213 25 1.92e-05 TTTTTCCCAG TTCCAAGA AACAAATACA chrII:14832186-14832266 39 1.92e-05 CTTTAATCCC TTCCAAGA GAGGACGGCT chrX:5031927-5032007 18 1.92e-05 CTTTTCGATT TTCCAAGA AAGTAATCCT chrII:351032-351112 37 1.92e-05 TTATGAGTAG TTCCAAGA AAGTTTTTCC chrIV:6514872-6514952 67 1.92e-05 CTCCAAGCAT TTCCAAGA ATACAC chrIV:3427714-3427794 49 1.92e-05 TTGGGCAGAA TTCCAAGA AAAAAAAAAG chrX:14562428-14562508 48 1.92e-05 GGTTTCTGCT TTCCAAGA AACGAATCAT chrV:1414754-1414834 49 1.92e-05 TAACTGGTCA TTCCAAGA AAGAGACTCC chrV:11020253-11020333 10 3.97e-05 ATATTTTCT TTGCAAGA TTATTTTCTG chrX:7216749-7216829 54 3.97e-05 TGGATAAGTG TTGCAAGA AGGGACACGA chrX:12085476-12085556 4 3.97e-05 TTT TTGCAAGA TTATGCATGC chrII:11316750-11316830 37 6.85e-05 AAACGATGAG TTTCAAGA AGCCGGGTGG chrX:7385449-7385529 52 6.85e-05 ATCTGCGATT TTTCAAGA TTTCAGCGCG chrII:6464901-6464981 15 6.85e-05 AACCAACTCT TTTCAAGA GCGGATTTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCAAGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:8212133-8212213 1.9e-05 24_[+5]_48 chrII:14832186-14832266 1.9e-05 38_[+5]_34 chrX:5031927-5032007 1.9e-05 17_[+5]_55 chrII:351032-351112 1.9e-05 36_[+5]_36 chrIV:6514872-6514952 1.9e-05 66_[+5]_6 chrIV:3427714-3427794 1.9e-05 48_[+5]_24 chrX:14562428-14562508 1.9e-05 47_[+5]_25 chrV:1414754-1414834 1.9e-05 48_[+5]_24 chrV:11020253-11020333 4e-05 9_[+5]_63 chrX:7216749-7216829 4e-05 53_[+5]_19 chrX:12085476-12085556 4e-05 3_[+5]_69 chrII:11316750-11316830 6.9e-05 36_[+5]_36 chrX:7385449-7385529 6.9e-05 51_[+5]_21 chrII:6464901-6464981 6.9e-05 14_[+5]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCAAGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCCAAGA width=8 seqs=14 chrV:8212133-8212213 ( 25) TTCCAAGA 1 chrII:14832186-14832266 ( 39) TTCCAAGA 1 chrX:5031927-5032007 ( 18) TTCCAAGA 1 chrII:351032-351112 ( 37) TTCCAAGA 1 chrIV:6514872-6514952 ( 67) TTCCAAGA 1 chrIV:3427714-3427794 ( 49) TTCCAAGA 1 chrX:14562428-14562508 ( 48) TTCCAAGA 1 chrV:1414754-1414834 ( 49) TTCCAAGA 1 chrV:11020253-11020333 ( 10) TTGCAAGA 1 chrX:7216749-7216829 ( 54) TTGCAAGA 1 chrX:12085476-12085556 ( 4) TTGCAAGA 1 chrII:11316750-11316830 ( 37) TTTCAAGA 1 chrX:7385449-7385529 ( 52) TTTCAAGA 1 chrII:6464901-6464981 ( 15) TTTCAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCAAGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 2.8e+002 -1045 -1045 -1045 178 -1045 -1045 -1045 178 -1045 156 4 -44 -1045 237 -1045 -1045 170 -1045 -1045 -1045 170 -1045 -1045 -1045 -1045 -1045 226 -1045 170 -1045 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCAAGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 2.8e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.571429 0.214286 0.214286 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCAAGA MEME-5 regular expression -------------------------------------------------------------------------------- TT[CGT]CAAGA -------------------------------------------------------------------------------- Time 26.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:1414754-1414834 3.54e-03 48_[+5(1.92e-05)]_24 chrIV:14269045-14269125 3.38e-02 70_[+1(1.17e-05)]_2 chrIV:5419881-5419961 2.49e-03 80 chrIV:9575788-9575868 3.88e-01 80 chrX:17518476-17518556 1.30e-01 80 chrIII:10579066-10579146 6.62e-04 55_[+3(2.61e-05)]_17 chrV:5745362-5745442 1.13e-01 80 chrV:5089948-5090028 8.94e-01 80 chrV:10699761-10699841 4.94e-01 80 chrX:12532301-12532381 6.06e-01 80 chrIII:10389769-10389849 8.88e-02 80 chrIV:11435096-11435176 1.25e-02 51_[+1(1.17e-05)]_21 chrX:5988944-5989024 3.73e-02 80 chrX:11127387-11127467 1.61e-02 80 chrX:13485969-13486049 9.17e-02 80 chrII:10970768-10970848 6.19e-01 80 chrIV:10448025-10448105 5.88e-01 80 chrIV:5287342-5287422 1.80e-02 52_[+3(5.91e-05)]_20 chrX:7487714-7487794 1.49e-01 80 chrX:3140044-3140124 7.67e-03 44_[+1(1.17e-05)]_28 chrX:6194508-6194588 2.18e-03 58_[+1(3.18e-05)]_14 chrX:15668838-15668918 3.97e-02 1_[+3(5.91e-05)]_71 chrV:10177565-10177645 1.32e-01 80 chrIV:8444147-8444227 2.27e-01 80 chrX:12513599-12513679 3.96e-01 80 chrX:15008851-15008931 1.93e-01 80 chrI:9371932-9372012 1.73e-02 80 chrIV:7415367-7415447 4.65e-04 24_[+2(2.33e-05)]_48 chrIV:3247003-3247083 6.54e-01 80 chrIII:6679474-6679554 1.09e-01 80 chrV:11997532-11997612 9.72e-01 80 chrI:8581608-8581688 7.42e-01 80 chrX:10516269-10516349 9.35e-02 61_[+1(1.95e-05)]_11 chrIV:17192037-17192117 2.30e-02 25_[+1(1.95e-05)]_47 chrX:5453285-5453365 1.12e-02 18_[+1(3.18e-05)]_54 chrX:7131043-7131123 4.11e-03 56_[+2(3.90e-05)]_16 chrV:6140952-6141032 7.59e-01 80 chrII:6378862-6378942 9.65e-02 72_[+1(5.71e-05)] chrV:10835595-10835675 1.24e-01 26_[+2(2.33e-05)]_46 chrV:8342545-8342625 2.81e-02 39_[+1(3.96e-05)]_33 chrV:14721995-14722075 2.46e-03 24_[+1(1.17e-05)]_48 chrII:7487465-7487545 8.55e-01 80 chrX:5370792-5370872 3.98e-01 80 chrII:12505595-12505675 3.31e-03 57_[+2(2.33e-05)]_15 chrX:6706070-6706150 3.26e-02 7_[+4(2.24e-05)]_65 chrX:15956082-15956162 1.23e-01 80 chrI:9735398-9735478 5.95e-03 48_[+2(5.37e-05)]_24 chrI:9705702-9705782 7.78e-02 80 chrI:13051957-13052037 1.71e-01 33_[+2(2.33e-05)]_39 chrII:12709026-12709106 1.99e-02 80 chrIV:11777209-11777289 9.46e-01 80 chrX:4319123-4319203 3.12e-01 80 chrV:9901267-9901347 5.74e-02 80 chrV:8421730-8421810 3.56e-01 80 chrII:9263908-9263988 3.78e-01 80 chrV:5741396-5741476 7.14e-01 80 chrV:4850570-4850650 8.20e-02 80 chrIII:1922637-1922717 9.31e-01 80 chrX:12546438-12546518 9.93e-02 80 chrX:10727298-10727378 5.44e-01 80 chrI:10754537-10754617 4.34e-02 66_[+3(2.61e-05)]_6 chrX:10674564-10674644 6.05e-02 80 chrI:5539983-5540063 1.79e-01 80 chrIII:3757988-3758068 9.49e-01 80 chrIV:10507727-10507807 2.85e-01 1_[+2(3.90e-05)]_71 chrX:5296407-5296487 7.31e-01 80 chrI:9703103-9703183 2.42e-02 54_[+2(2.33e-05)]_18 chrIV:466634-466714 3.36e-01 80 chrX:6945795-6945875 2.24e-01 80 chrI:9601692-9601772 3.28e-01 80 chrI:1279420-1279500 1.23e-01 80 chrI:9768024-9768104 2.22e-01 28_[+2(7.83e-05)]_44 chrIII:11673228-11673308 5.28e-02 49_[+4(3.40e-05)]_23 chrX:8801022-8801102 1.33e-02 80 chrIV:5905728-5905808 6.06e-02 33_[+2(2.33e-05)]_39 chrX:2596760-2596840 3.01e-03 36_[+4(2.24e-05)]_36 chrX:15664492-15664572 5.72e-01 80 chrX:15539479-15539559 1.19e-01 80 chrIV:11388870-11388950 8.67e-02 80 chrX:13617070-13617150 1.81e-02 26_[+2(5.37e-05)]_46 chrV:9186165-9186245 1.66e-02 80 chrIV:3246154-3246234 8.41e-02 34_[+1(5.71e-05)]_38 chrV:10862824-10862904 4.39e-01 80 chrII:7141675-7141755 1.79e-02 32_[+1(3.96e-05)]_40 chrV:4852144-4852224 3.44e-02 80 chrII:6745947-6746027 8.75e-01 80 chrI:6394359-6394439 9.52e-01 80 chrIII:8229623-8229703 6.28e-02 80 chrX:12188399-12188479 7.91e-01 80 chrX:14478359-14478439 1.55e-02 52_[+4(8.07e-06)]_20 chrX:910515-910595 7.49e-02 80 chrIII:482910-482990 7.59e-02 80 chrIV:134211-134291 2.07e-01 80 chrX:3340051-3340131 3.91e-01 80 chrI:9792212-9792292 2.14e-01 80 chrII:7181563-7181643 2.83e-02 80 chrI:6574244-6574324 1.83e-04 29_[+4(4.84e-06)]_43 chrIII:8002878-8002958 1.15e-02 19_[+3(5.91e-05)]_53 chrI:6806400-6806480 1.67e-02 44_[+1(9.48e-05)]_28 chrIII:11672041-11672121 1.52e-01 67_[+1(9.48e-05)]_5 chrIII:6352614-6352694 4.53e-02 80 chrX:12085476-12085556 1.07e-01 3_[+5(3.97e-05)]_69 chrX:15382185-15382265 1.41e-02 68_[+1(9.48e-05)]_4 chrI:11140523-11140603 9.48e-03 80 chrIII:1918665-1918745 3.90e-03 56_[+2(2.33e-05)]_16 chrII:8059656-8059736 1.14e-01 80 chrIV:4613631-4613711 2.67e-01 80 chrX:10763560-10763640 1.76e-02 69_[+1(3.96e-05)]_3 chrII:10806525-10806605 1.15e-01 80 chrI:4908201-4908281 1.05e-02 12_[+3(5.91e-05)]_60 chrX:844835-844915 5.02e-02 80 chrX:12204496-12204576 9.61e-01 80 chrIII:11641510-11641590 2.49e-01 80 chrX:15355724-15355804 6.12e-01 80 chrX:14562428-14562508 3.57e-02 47_[+5(1.92e-05)]_25 chrIII:2698910-2698990 1.37e-03 13_[+2(5.37e-05)]_59 chrX:15478979-15479059 5.43e-01 80 chrIV:3427714-3427794 3.29e-03 48_[+5(1.92e-05)]_24 chrI:296300-296380 7.28e-01 80 chrV:11372373-11372453 2.14e-01 80 chrII:6464901-6464981 3.02e-05 14_[+5(6.85e-05)]_27_[+1(1.17e-05)]_\ 23 chrV:9972906-9972986 8.68e-01 80 chrIV:6514872-6514952 4.18e-06 8_[+3(8.27e-05)]_9_[+4(4.84e-06)]_\ 18_[+3(5.91e-05)]_7_[+5(1.92e-05)]_6 chrI:7361765-7361845 1.53e-01 80 chrX:7014837-7014917 9.17e-01 80 chrIII:8511002-8511082 7.20e-01 80 chrX:12556990-12557070 1.58e-02 47_[+1(1.95e-05)]_25 chrIV:10478046-10478126 4.58e-01 80 chrII:12382822-12382902 3.67e-03 5_[+3(2.61e-05)]_67 chrV:20780596-20780676 1.87e-01 80 chrI:14534275-14534355 5.39e-04 62_[+1(1.17e-05)]_10 chrV:11437470-11437550 1.02e-01 13_[+2(3.90e-05)]_59 chrV:7884604-7884684 4.08e-01 80 chrX:15390296-15390376 2.40e-01 80 chrI:10757582-10757662 2.12e-01 80 chrV:4464534-4464614 3.24e-02 80 chrX:7385449-7385529 1.20e-02 51_[+5(6.85e-05)]_21 chrX:16114069-16114149 3.58e-01 80 chrIV:1739066-1739146 1.78e-01 80 chrX:3517336-3517416 4.44e-01 80 chrX:2078944-2079024 4.55e-02 80 chrX:12511902-12511982 3.20e-01 80 chrIII:3675985-3676065 9.55e-03 9_[+4(2.24e-05)]_63 chrI:4473055-4473135 1.45e-01 22_[+2(5.37e-05)]_50 chrX:5754636-5754716 1.82e-01 80 chrX:10010609-10010689 3.10e-01 80 chrI:13030349-13030429 9.95e-01 80 chrII:13342398-13342478 6.60e-02 80 chrIV:11692126-11692206 6.63e-01 80 chrX:15536153-15536233 3.40e-01 80 chrX:12669112-12669192 1.97e-01 80 chrX:12559495-12559575 6.16e-01 80 chrIII:12557527-12557607 6.92e-02 80 chrIII:10601017-10601097 6.17e-02 80 chrV:9270822-9270902 9.51e-01 80 chrV:12530282-12530362 3.61e-02 72_[+2(5.37e-05)] chrIII:13717003-13717083 7.63e-01 80 chrII:10926339-10926419 8.88e-01 80 chrX:7216749-7216829 4.90e-02 53_[+5(3.97e-05)]_19 chrIV:7624013-7624093 7.27e-01 80 chrI:14855726-14855806 3.27e-02 80 chrIII:6069033-6069113 1.64e-02 80 chrII:7483487-7483567 5.89e-01 80 chrI:3823620-3823700 2.85e-03 56_[+3(2.61e-05)]_16 chrV:1366289-1366369 7.61e-01 80 chrX:13611774-13611854 1.32e-01 80 chrI:6394908-6394988 4.08e-02 80 chrX:12210539-12210619 3.52e-02 43_[+3(5.91e-05)]_29 chrIII:12615994-12616074 5.61e-02 24_[+4(8.07e-06)]_48 chrI:6479853-6479933 8.16e-03 41_[+1(1.17e-05)]_31 chrIV:9179341-9179421 2.99e-02 80 chrIV:10506208-10506288 5.70e-01 80 chrIV:10436265-10436345 1.17e-02 80 chrX:9661829-9661909 3.34e-01 80 chrIV:13028138-13028218 3.19e-01 80 chrV:11020253-11020333 2.51e-02 9_[+5(3.97e-05)]_63 chrIV:11760040-11760120 5.53e-03 13_[+1(3.18e-05)]_59 chrIII:3977714-3977794 5.21e-02 80 chrIII:8784711-8784791 2.22e-01 26_[+2(2.33e-05)]_46 chrX:5383618-5383698 1.26e-01 80 chrV:7894127-7894207 1.74e-01 80 chrI:9427847-9427927 3.67e-01 80 chrII:5334794-5334874 2.46e-01 80 chrX:5559676-5559756 1.45e-02 15_[+1(5.71e-05)]_57 chrIII:8391508-8391588 6.72e-01 80 chrX:3017495-3017575 8.41e-01 80 chrV:10867784-10867864 2.79e-01 80 chrX:15264778-15264858 2.01e-01 80 chrX:7128775-7128855 2.80e-01 80 chrIV:8941282-8941362 3.38e-02 80 chrI:10152187-10152267 1.36e-02 29_[+1(6.53e-05)]_43 chrII:351032-351112 3.05e-05 36_[+5(1.92e-05)]_5_[+1(8.18e-05)]_\ 23 chrIV:132246-132326 9.16e-04 25_[+3(1.52e-05)]_14_[+4(1.26e-05)]_\ 25 chrX:600834-600914 2.78e-01 80 chrV:6244811-6244891 7.86e-02 80 chrV:7969777-7969857 1.34e-01 23_[+2(3.90e-05)]_49 chrX:12914410-12914490 1.77e-01 80 chrX:17613172-17613252 5.43e-04 80 chrII:14810810-14810890 2.60e-03 24_[+2(2.33e-05)]_48 chrX:10603861-10603941 1.78e-01 80 chrX:12200685-12200765 1.47e-02 11_[+3(5.91e-05)]_29_[+3(5.91e-05)]_\ 24 chrI:9703798-9703878 1.60e-02 80 chrII:9117980-9118060 1.85e-01 80 chrI:9372134-9372214 1.32e-02 54_[+3(8.27e-05)]_18 chrX:5031927-5032007 4.86e-02 17_[+5(1.92e-05)]_55 chrX:5129598-5129678 8.63e-01 80 chrI:13007717-13007797 3.42e-01 80 chrX:17159801-17159881 4.97e-02 47_[+2(7.83e-05)]_25 chrV:1943582-1943662 4.95e-02 80 chrIII:3671123-3671203 4.37e-01 80 chrIV:5435798-5435878 6.02e-03 2_[+3(5.91e-05)]_70 chrV:9196189-9196269 7.91e-03 50_[+1(1.17e-05)]_22 chrI:6480885-6480965 2.36e-04 64_[+1(9.48e-05)]_8 chrX:5084656-5084736 5.07e-02 35_[+1(1.17e-05)]_37 chrIII:8510020-8510100 1.03e-02 80 chrIII:3560039-3560119 5.34e-01 80 chrV:9466529-9466609 7.74e-03 80 chrII:5068017-5068097 1.00e+00 80 chrIV:17285423-17285503 3.34e-02 19_[+3(8.27e-05)]_53 chrV:5556939-5557019 3.11e-01 80 chrV:16753888-16753968 3.81e-01 80 chrV:9128759-9128839 6.87e-01 80 chrIII:6690605-6690685 2.58e-01 80 chrII:11316750-11316830 8.38e-02 36_[+5(6.85e-05)]_36 chrIII:8392458-8392538 1.45e-02 9_[+3(5.91e-05)]_63 chrII:15190142-15190222 3.52e-03 3_[+3(5.91e-05)]_69 chrIV:14260918-14260998 4.24e-01 80 chrI:9149338-9149418 4.81e-02 15_[+3(8.27e-05)]_57 chrV:9465698-9465778 6.50e-02 42_[+1(8.18e-05)]_30 chrII:2748419-2748499 7.07e-02 80 chrII:6839091-6839171 4.91e-04 49_[+4(4.84e-06)]_23 chrIV:10652594-10652674 8.93e-01 80 chrX:15015618-15015698 1.81e-03 53_[+1(3.18e-05)]_19 chrI:7398939-7399019 8.43e-02 80 chrV:5571797-5571877 1.44e-01 80 chrIII:529990-530070 6.00e-01 80 chrII:2378771-2378851 3.03e-01 80 chrII:14548846-14548926 2.25e-01 80 chrIV:10711051-10711131 9.85e-01 80 chrIII:6695311-6695391 4.09e-01 80 chrIII:5334005-5334085 5.49e-01 80 chrV:9313289-9313369 9.17e-01 80 chrV:12024513-12024593 5.01e-01 80 chrII:14832186-14832266 1.70e-02 38_[+5(1.92e-05)]_34 chrIV:16658930-16659010 9.64e-01 80 chrIII:4495804-4495884 3.78e-01 80 chrII:8383067-8383147 8.67e-01 80 chrX:1121595-1121675 7.55e-01 80 chrV:8212133-8212213 9.59e-03 24_[+5(1.92e-05)]_48 chrV:5968744-5968824 9.04e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************