******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/efl-3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:8986053-8986133 1.0000 80 chrII:8415622-8415702 1.0000 80 chrV:5425219-5425299 1.0000 80 chrIV:1911387-1911467 1.0000 80 chrIV:4401064-4401144 1.0000 80 chrIV:9615646-9615726 1.0000 80 chrI:231909-231989 1.0000 80 chrII:10382284-10382364 1.0000 80 chrV:13081426-13081506 1.0000 80 chrX:12671797-12671877 1.0000 80 chrIII:13780583-13780663 1.0000 80 chrIV:8334079-8334159 1.0000 80 chrII:8409655-8409735 1.0000 80 chrIII:13187916-13187996 1.0000 80 chrX:14500523-14500603 1.0000 80 chrI:13421168-13421248 1.0000 80 chrII:12006810-12006890 1.0000 80 chrX:16266187-16266267 1.0000 80 chrIV:7488069-7488149 1.0000 80 chrI:1273932-1274012 1.0000 80 chrIV:16415752-16415832 1.0000 80 chrX:14487548-14487628 1.0000 80 chrX:12511600-12511680 1.0000 80 chrIII:6132172-6132252 1.0000 80 chrV:16040599-16040679 1.0000 80 chrV:12295775-12295855 1.0000 80 chrII:10559217-10559297 1.0000 80 chrI:13422869-13422949 1.0000 80 chrIII:7645279-7645359 1.0000 80 chrIII:4284856-4284936 1.0000 80 chrIV:9790876-9790956 1.0000 80 chrIII:9868285-9868365 1.0000 80 chrIII:11091766-11091846 1.0000 80 chrI:9332713-9332793 1.0000 80 chrIV:13695909-13695989 1.0000 80 chrIII:2876086-2876166 1.0000 80 chrV:5917863-5917943 1.0000 80 chrII:8410445-8410525 1.0000 80 chrX:10769486-10769566 1.0000 80 chrI:4769666-4769746 1.0000 80 chrI:4322845-4322925 1.0000 80 chrIII:6364511-6364591 1.0000 80 chrIII:12273795-12273875 1.0000 80 chrII:13117260-13117340 1.0000 80 chrIII:11110898-11110978 1.0000 80 chrIII:7300273-7300353 1.0000 80 chrI:6996018-6996098 1.0000 80 chrI:3987244-3987324 1.0000 80 chrII:9285099-9285179 1.0000 80 chrII:9064622-9064702 1.0000 80 chrII:10538119-10538199 1.0000 80 chrX:14790363-14790443 1.0000 80 chrIV:9672625-9672705 1.0000 80 chrX:2709376-2709456 1.0000 80 chrIV:15570908-15570988 1.0000 80 chrX:11339598-11339678 1.0000 80 chrV:16401710-16401790 1.0000 80 chrII:7945296-7945376 1.0000 80 chrV:19686379-19686459 1.0000 80 chrIV:16400526-16400606 1.0000 80 chrIII:5349397-5349477 1.0000 80 chrIV:2663144-2663224 1.0000 80 chrII:6061653-6061733 1.0000 80 chrV:15082447-15082527 1.0000 80 chrIII:11090434-11090514 1.0000 80 chrX:15327340-15327420 1.0000 80 chrIII:13779411-13779491 1.0000 80 chrII:9591225-9591305 1.0000 80 chrIII:8307526-8307606 1.0000 80 chrII:2570547-2570627 1.0000 80 chrX:6253998-6254078 1.0000 80 chrIV:11594261-11594341 1.0000 80 chrI:4914114-4914194 1.0000 80 chrX:5523149-5523229 1.0000 80 chrIII:3983983-3984063 1.0000 80 chrX:13539893-13539973 1.0000 80 chrII:6822559-6822639 1.0000 80 chrV:2638659-2638739 1.0000 80 chrII:6913443-6913523 1.0000 80 chrV:8535067-8535147 1.0000 80 chrV:10342001-10342081 1.0000 80 chrV:13380334-13380414 1.0000 80 chrV:6254106-6254186 1.0000 80 chrI:15013995-15014075 1.0000 80 chrX:7825839-7825919 1.0000 80 chrII:7802108-7802188 1.0000 80 chrIV:7103490-7103570 1.0000 80 chrV:11764473-11764553 1.0000 80 chrIII:10621391-10621471 1.0000 80 chrV:12510128-12510208 1.0000 80 chrIV:866855-866935 1.0000 80 chrX:12500824-12500904 1.0000 80 chrII:4999313-4999393 1.0000 80 chrIII:5871887-5871967 1.0000 80 chrX:1909541-1909621 1.0000 80 chrIV:957943-958023 1.0000 80 chrX:3788671-3788751 1.0000 80 chrX:4395582-4395662 1.0000 80 chrX:12515967-12516047 1.0000 80 chrV:11533151-11533231 1.0000 80 chrX:17428063-17428143 1.0000 80 chrIII:11946506-11946586 1.0000 80 chrX:7181749-7181829 1.0000 80 chrIII:10845040-10845120 1.0000 80 chrX:6743913-6743993 1.0000 80 chrIII:5308421-5308501 1.0000 80 chrIV:13704195-13704275 1.0000 80 chrIV:15526627-15526707 1.0000 80 chrI:8245520-8245600 1.0000 80 chrV:8247821-8247901 1.0000 80 chrIV:10483865-10483945 1.0000 80 chrIV:9670158-9670238 1.0000 80 chrV:12870088-12870168 1.0000 80 chrIV:2999006-2999086 1.0000 80 chrII:411022-411102 1.0000 80 chrV:10717185-10717265 1.0000 80 chrV:15661066-15661146 1.0000 80 chrV:10353180-10353260 1.0000 80 chrIII:13717724-13717804 1.0000 80 chrII:15089583-15089663 1.0000 80 chrII:3553623-3553703 1.0000 80 chrIII:8529144-8529224 1.0000 80 chrIII:1951627-1951707 1.0000 80 chrV:13313231-13313311 1.0000 80 chrIV:11489951-11490031 1.0000 80 chrX:14490128-14490208 1.0000 80 chrX:13514551-13514631 1.0000 80 chrV:10526068-10526148 1.0000 80 chrX:1504920-1505000 1.0000 80 chrV:13371585-13371665 1.0000 80 chrI:2299622-2299702 1.0000 80 chrIII:5722024-5722104 1.0000 80 chrI:10553911-10553991 1.0000 80 chrIV:796728-796808 1.0000 80 chrI:6835671-6835751 1.0000 80 chrX:2364886-2364966 1.0000 80 chrV:13556837-13556917 1.0000 80 chrIII:11290646-11290726 1.0000 80 chrI:14070798-14070878 1.0000 80 chrX:6750262-6750342 1.0000 80 chrV:13468335-13468415 1.0000 80 chrII:14405243-14405323 1.0000 80 chrX:11207078-11207158 1.0000 80 chrIII:13296588-13296668 1.0000 80 chrI:9988936-9989016 1.0000 80 chrIII:5068944-5069024 1.0000 80 chrV:14055182-14055262 1.0000 80 chrX:8650690-8650770 1.0000 80 chrII:13829326-13829406 1.0000 80 chrIII:1926541-1926621 1.0000 80 chrX:17544481-17544561 1.0000 80 chrX:3678911-3678991 1.0000 80 chrII:4791441-4791521 1.0000 80 chrI:461672-461752 1.0000 80 chrI:3266716-3266796 1.0000 80 chrI:13756515-13756595 1.0000 80 chrIII:6421252-6421332 1.0000 80 chrIII:3476361-3476441 1.0000 80 chrIV:4049672-4049752 1.0000 80 chrII:2889340-2889420 1.0000 80 chrIV:6321903-6321983 1.0000 80 chrIV:14611282-14611362 1.0000 80 chrV:9789966-9790046 1.0000 80 chrV:6100731-6100811 1.0000 80 chrII:4299412-4299492 1.0000 80 chrIII:7272349-7272429 1.0000 80 chrX:4222912-4222992 1.0000 80 chrX:16206177-16206257 1.0000 80 chrI:11374408-11374488 1.0000 80 chrI:1067179-1067259 1.0000 80 chrIV:7486359-7486439 1.0000 80 chrIV:16415261-16415341 1.0000 80 chrV:13715426-13715506 1.0000 80 chrV:15766350-15766430 1.0000 80 chrV:18981165-18981245 1.0000 80 chrII:14050642-14050722 1.0000 80 chrII:10868917-10868997 1.0000 80 chrII:4044528-4044608 1.0000 80 chrV:6246647-6246727 1.0000 80 chrIII:8904214-8904294 1.0000 80 chrIII:1681183-1681263 1.0000 80 chrV:20580666-20580746 1.0000 80 chrIII:7520785-7520865 1.0000 80 chrX:1389580-1389660 1.0000 80 chrII:6776806-6776886 1.0000 80 chrII:5661269-5661349 1.0000 80 chrV:8349106-8349186 1.0000 80 chrIII:11119425-11119505 1.0000 80 chrIV:2676425-2676505 1.0000 80 chrIII:10707171-10707251 1.0000 80 chrX:4524099-4524179 1.0000 80 chrIV:3636705-3636785 1.0000 80 chrIII:11746881-11746961 1.0000 80 chrIV:2219589-2219669 1.0000 80 chrII:2974059-2974139 1.0000 80 chrI:16963-17043 1.0000 80 chrIV:5183820-5183900 1.0000 80 chrX:11644071-11644151 1.0000 80 chrI:10565428-10565508 1.0000 80 chrI:5164993-5165073 1.0000 80 chrIV:12372037-12372117 1.0000 80 chrV:13678564-13678644 1.0000 80 chrII:8185151-8185231 1.0000 80 chrIII:10407446-10407526 1.0000 80 chrIV:8973732-8973812 1.0000 80 chrI:13369912-13369992 1.0000 80 chrI:5311854-5311934 1.0000 80 chrIV:2602121-2602201 1.0000 80 chrIV:6206521-6206601 1.0000 80 chrII:11980309-11980389 1.0000 80 chrIV:14825040-14825120 1.0000 80 chrX:6737648-6737728 1.0000 80 chrX:15849666-15849746 1.0000 80 chrIII:8447147-8447227 1.0000 80 chrV:8228948-8229028 1.0000 80 chrX:10145228-10145308 1.0000 80 chrV:1004018-1004098 1.0000 80 chrIV:15471599-15471679 1.0000 80 chrI:11930117-11930197 1.0000 80 chrV:11521552-11521632 1.0000 80 chrII:4740171-4740251 1.0000 80 chrIV:9511451-9511531 1.0000 80 chrIV:9074357-9074437 1.0000 80 chrII:15025933-15026013 1.0000 80 chrI:11934120-11934200 1.0000 80 chrI:9163465-9163545 1.0000 80 chrX:13145096-13145176 1.0000 80 chrII:13199855-13199935 1.0000 80 chrIV:4513634-4513714 1.0000 80 chrII:5599810-5599890 1.0000 80 chrV:14347363-14347443 1.0000 80 chrI:8409953-8410033 1.0000 80 chrIII:1923666-1923746 1.0000 80 chrII:10301003-10301083 1.0000 80 chrII:14059949-14060029 1.0000 80 chrII:14795108-14795188 1.0000 80 chrIV:17249857-17249937 1.0000 80 chrIV:15646617-15646697 1.0000 80 chrII:4942548-4942628 1.0000 80 chrV:2600785-2600865 1.0000 80 chrII:216737-216817 1.0000 80 chrX:1345020-1345100 1.0000 80 chrII:10551986-10552066 1.0000 80 chrI:13663362-13663442 1.0000 80 chrIII:9668166-9668246 1.0000 80 chrV:14685700-14685780 1.0000 80 chrX:16056552-16056632 1.0000 80 chrX:10377796-10377876 1.0000 80 chrI:7079562-7079642 1.0000 80 chrII:6968557-6968637 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_efl-3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/efl-3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.272 C 0.224 G 0.235 T 0.269 Background letter frequencies (from file dataset with add-one prior applied): A 0.272 C 0.224 G 0.235 T 0.269 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTMGGCCR MEME-1 width = 8 sites = 51 llr = 411 E-value = 2.1e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTMGGCCR MEME-1 Description -------------------------------------------------------------------------------- Simplified A :24:::15 pos.-specific C 9:5::a9: probability G :2:a9::5 matrix T 16::1::: bits 2.2 * 1.9 * * 1.7 * * ** 1.5 * **** Relative 1.3 * **** Entropy 1.1 * ***** (11.6 bits) 0.9 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCGGCCG consensus AA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:11374408-11374488 60 8.79e-06 CGAGCACATC CTCGGCCG TGTACTCCTC chrII:4791441-4791521 30 8.79e-06 TAACATCCGA CTCGGCCG CCGGCCGTGT chrII:10538119-10538199 30 8.79e-06 ATAATTATTT CTCGGCCG TGTACTCCTC chrIV:6206521-6206601 73 1.90e-05 CGTGCTGGTT CTCGGCCA chrIV:10483865-10483945 45 1.90e-05 AGCATAAATC CTCGGCCA CGGTTTGTGG chrI:15013995-15014075 11 1.90e-05 ATTTCGCGCG CTCGGCCA GAGGACGAGT chrV:13313231-13313311 18 2.96e-05 CAATCGATTT CTAGGCCG TCGGCCGTGT chrII:6913443-6913523 62 2.96e-05 GGAGAGTTTT CTAGGCCG TGTGTGCCGC chrV:15082447-15082527 56 2.96e-05 TTGTCGGATT CTAGGCCG CATGCGCAGA chrII:4740171-4740251 13 4.20e-05 GTGCGAGTTT CTAGGCCA CGCGGAAATG chrX:15849666-15849746 59 4.20e-05 TTGGAGTTTT CTAGGCCA TCTCAAGTGT chrI:13369912-13369992 8 4.20e-05 GAAAAAG CTAGGCCA CGTGAGGTGG chrIII:7520785-7520865 72 4.20e-05 AATTTGGATT CTAGGCCA T chrV:18981165-18981245 23 4.20e-05 TCAGAGTTTC CTAGGCCA CCGCCGGTGT chrV:13468335-13468415 37 4.20e-05 TGTGCGTTTT CTAGGCCA TTTTGGCGTG chrV:13556837-13556917 19 4.20e-05 GCGGAGTTTT CTAGGCCA CCACTCAAGA chrIII:5722024-5722104 31 4.20e-05 GCGGAGGTTT CTAGGCCA CCGGCTGTGT chrII:15089583-15089663 26 4.20e-05 CATTTGGTTC CTAGGCCA CGCGGCCGTG chrIII:5349397-5349477 65 4.20e-05 AAAAAGAAAG CTAGGCCA CCGATGCG chrII:13117260-13117340 55 4.20e-05 CCCCGAAATG CTAGGCCA CGCGTCGCGT chrIII:12273795-12273875 11 4.20e-05 GTTGTGGTTT CTAGGCCA GGGGTTTTGT chrIV:15526627-15526707 42 5.09e-05 GAGAGGACTA CACGGCCG AGATTCCGAC chrIII:5871887-5871967 55 5.09e-05 GAGAGGAGTG CACGGCCG AGAAAAGTCC chrI:3987244-3987324 50 5.09e-05 GAGAGGAGTA CACGGCCG AGAATCTATG chrIV:16415752-16415832 29 5.09e-05 GAGAGGAGTA CACGGCCG AGTGGCCTAG chrIV:8973732-8973812 8 5.86e-05 TAGTCCG CGCGGCCG TGTAGTCCTC chrII:2889340-2889420 13 5.86e-05 AATTGATTAA CGCGGCCG AGAAATCGAT chrI:461672-461752 73 5.86e-05 CTAACATCTC CGCGGCCG chrV:2638659-2638739 49 5.86e-05 TTGCGGTGGC CGCGGCCG TGAAAATGCG chrIII:8307526-8307606 16 5.86e-05 TCCGAAATAA CGCGGCCG AATTTTTGTG chrV:16401710-16401790 4 5.86e-05 GGC CGCGGCCG AGGTTTCTCC chrIII:10407446-10407526 73 6.88e-05 GCGCGTCTCT CACGGCCA chrX:4524099-4524179 13 6.88e-05 TCCCAAACTG CACGGCCA ATGGGGTGCC chrX:14490128-14490208 73 7.96e-05 ctaaggccgc caaggccg chrIII:9868285-9868365 46 8.85e-05 ACCTCTAGTC CGCGGCCA CCGGAAAAGC chrX:14487548-14487628 29 1.10e-04 ATCCCATTTG CAAGGCCA TCTGTTCTAA chrIII:10621391-10621471 61 1.31e-04 ACGGGGGATT CTCGTCCG TGTACTTCGA chrI:4769666-4769746 13 1.53e-04 gtagagaatc ctcgtcca tgtacccccc chrIV:6321903-6321983 9 1.87e-04 GGGAAATG TTCGGCCG TGTACTCCTC chrII:9591225-9591305 53 1.87e-04 AAAAACAATT CTAGTCCG CGCGTCGTGT chrV:5917863-5917943 52 1.87e-04 AATGAGATTT CTAGTCCG CATTAAACGG chrX:1345020-1345100 1 1.99e-04 . CTTGGCCA TATACATTTA chrX:8650690-8650770 23 2.08e-04 GAAGACTGAT CTCGGGCG GGCTCGAACC chrV:14685700-14685780 26 2.47e-04 TCTGCAAAAC TTCGGCCA GGTGCTGAAA chrX:1504920-1505000 57 2.47e-04 ATGGAAGTTT CTCGGCAA CAACTGACGG chrV:8349106-8349186 34 2.95e-04 GAGTTTGCGA CTAGGGCG GTCTTACACA chrIII:13296588-13296668 52 3.35e-04 CGCAATTAAT TTAGGCCA ACATTAAATT chrIII:5308421-5308501 33 3.75e-04 GCCGGGAGGC CATGGCCG AGTTTTGACC chrIV:16415261-16415341 14 4.40e-04 GAGAGGAGTA CACGGCAG CGTGGCCTAG chrIV:14611282-14611362 29 4.40e-04 AAATATCGAC CACGGCAG GATTCGAACC chrV:8228948-8229028 58 7.90e-04 AGTTTTTCGC CGCGCCCG ACACTACGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11374408-11374488 8.8e-06 59_[+1]_13 chrII:4791441-4791521 8.8e-06 29_[+1]_43 chrII:10538119-10538199 8.8e-06 29_[+1]_43 chrIV:6206521-6206601 1.9e-05 72_[+1] chrIV:10483865-10483945 1.9e-05 44_[+1]_28 chrI:15013995-15014075 1.9e-05 10_[+1]_62 chrV:13313231-13313311 3e-05 17_[+1]_55 chrII:6913443-6913523 3e-05 61_[+1]_11 chrV:15082447-15082527 3e-05 55_[+1]_17 chrII:4740171-4740251 4.2e-05 12_[+1]_60 chrX:15849666-15849746 4.2e-05 58_[+1]_14 chrI:13369912-13369992 4.2e-05 7_[+1]_65 chrIII:7520785-7520865 4.2e-05 71_[+1]_1 chrV:18981165-18981245 4.2e-05 22_[+1]_50 chrV:13468335-13468415 4.2e-05 36_[+1]_36 chrV:13556837-13556917 4.2e-05 18_[+1]_54 chrIII:5722024-5722104 4.2e-05 30_[+1]_42 chrII:15089583-15089663 4.2e-05 25_[+1]_47 chrIII:5349397-5349477 4.2e-05 64_[+1]_8 chrII:13117260-13117340 4.2e-05 54_[+1]_18 chrIII:12273795-12273875 4.2e-05 10_[+1]_62 chrIV:15526627-15526707 5.1e-05 41_[+1]_31 chrIII:5871887-5871967 5.1e-05 54_[+1]_18 chrI:3987244-3987324 5.1e-05 49_[+1]_23 chrIV:16415752-16415832 5.1e-05 28_[+1]_44 chrIV:8973732-8973812 5.9e-05 7_[+1]_65 chrII:2889340-2889420 5.9e-05 12_[+1]_60 chrI:461672-461752 5.9e-05 72_[+1] chrV:2638659-2638739 5.9e-05 48_[+1]_24 chrIII:8307526-8307606 5.9e-05 15_[+1]_57 chrV:16401710-16401790 5.9e-05 3_[+1]_69 chrIII:10407446-10407526 6.9e-05 72_[+1] chrX:4524099-4524179 6.9e-05 12_[+1]_60 chrX:14490128-14490208 8e-05 72_[+1] chrIII:9868285-9868365 8.9e-05 45_[+1]_27 chrX:14487548-14487628 0.00011 28_[+1]_44 chrIII:10621391-10621471 0.00013 60_[+1]_12 chrI:4769666-4769746 0.00015 12_[+1]_60 chrIV:6321903-6321983 0.00019 8_[+1]_64 chrII:9591225-9591305 0.00019 52_[+1]_20 chrV:5917863-5917943 0.00019 51_[+1]_21 chrX:1345020-1345100 0.0002 [+1]_72 chrX:8650690-8650770 0.00021 22_[+1]_50 chrV:14685700-14685780 0.00025 25_[+1]_47 chrX:1504920-1505000 0.00025 56_[+1]_16 chrV:8349106-8349186 0.00029 33_[+1]_39 chrIII:13296588-13296668 0.00033 51_[+1]_21 chrIII:5308421-5308501 0.00038 32_[+1]_40 chrIV:16415261-16415341 0.00044 13_[+1]_59 chrIV:14611282-14611362 0.00044 28_[+1]_44 chrV:8228948-8229028 0.00079 57_[+1]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTMGGCCR width=8 seqs=51 chrI:11374408-11374488 ( 60) CTCGGCCG 1 chrII:4791441-4791521 ( 30) CTCGGCCG 1 chrII:10538119-10538199 ( 30) CTCGGCCG 1 chrIV:6206521-6206601 ( 73) CTCGGCCA 1 chrIV:10483865-10483945 ( 45) CTCGGCCA 1 chrI:15013995-15014075 ( 11) CTCGGCCA 1 chrV:13313231-13313311 ( 18) CTAGGCCG 1 chrII:6913443-6913523 ( 62) CTAGGCCG 1 chrV:15082447-15082527 ( 56) CTAGGCCG 1 chrII:4740171-4740251 ( 13) CTAGGCCA 1 chrX:15849666-15849746 ( 59) CTAGGCCA 1 chrI:13369912-13369992 ( 8) CTAGGCCA 1 chrIII:7520785-7520865 ( 72) CTAGGCCA 1 chrV:18981165-18981245 ( 23) CTAGGCCA 1 chrV:13468335-13468415 ( 37) CTAGGCCA 1 chrV:13556837-13556917 ( 19) CTAGGCCA 1 chrIII:5722024-5722104 ( 31) CTAGGCCA 1 chrII:15089583-15089663 ( 26) CTAGGCCA 1 chrIII:5349397-5349477 ( 65) CTAGGCCA 1 chrII:13117260-13117340 ( 55) CTAGGCCA 1 chrIII:12273795-12273875 ( 11) CTAGGCCA 1 chrIV:15526627-15526707 ( 42) CACGGCCG 1 chrIII:5871887-5871967 ( 55) CACGGCCG 1 chrI:3987244-3987324 ( 50) CACGGCCG 1 chrIV:16415752-16415832 ( 29) CACGGCCG 1 chrIV:8973732-8973812 ( 8) CGCGGCCG 1 chrII:2889340-2889420 ( 13) CGCGGCCG 1 chrI:461672-461752 ( 73) CGCGGCCG 1 chrV:2638659-2638739 ( 49) CGCGGCCG 1 chrIII:8307526-8307606 ( 16) CGCGGCCG 1 chrV:16401710-16401790 ( 4) CGCGGCCG 1 chrIII:10407446-10407526 ( 73) CACGGCCA 1 chrX:4524099-4524179 ( 13) CACGGCCA 1 chrX:14490128-14490208 ( 73) CAAGGCCG 1 chrIII:9868285-9868365 ( 46) CGCGGCCA 1 chrX:14487548-14487628 ( 29) CAAGGCCA 1 chrIII:10621391-10621471 ( 61) CTCGTCCG 1 chrI:4769666-4769746 ( 13) CTCGTCCA 1 chrIV:6321903-6321983 ( 9) TTCGGCCG 1 chrII:9591225-9591305 ( 53) CTAGTCCG 1 chrV:5917863-5917943 ( 52) CTAGTCCG 1 chrX:1345020-1345100 ( 1) CTTGGCCA 1 chrX:8650690-8650770 ( 23) CTCGGGCG 1 chrV:14685700-14685780 ( 26) TTCGGCCA 1 chrX:1504920-1505000 ( 57) CTCGGCAA 1 chrV:8349106-8349186 ( 34) CTAGGGCG 1 chrIII:13296588-13296668 ( 52) TTAGGCCA 1 chrIII:5308421-5308501 ( 33) CATGGCCG 1 chrIV:16415261-16415341 ( 14) CACGGCAG 1 chrIV:14611282-14611362 ( 29) CACGGCAG 1 chrV:8228948-8229028 ( 58) CGCGCCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.21058 E= 2.1e-012 -1232 207 -1232 -219 -33 -1232 -58 122 60 129 -1232 -278 -1232 -1232 209 -1232 -1232 -351 194 -178 -1232 210 -258 -1232 -221 207 -1232 -1232 79 -1232 117 -1232 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 2.1e-012 0.000000 0.941176 0.000000 0.058824 0.215686 0.000000 0.156863 0.627451 0.411765 0.549020 0.000000 0.039216 0.000000 0.000000 1.000000 0.000000 0.000000 0.019608 0.901961 0.078431 0.000000 0.960784 0.039216 0.000000 0.058824 0.941176 0.000000 0.000000 0.470588 0.000000 0.529412 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCR MEME-1 regular expression -------------------------------------------------------------------------------- C[TA][CA]GGCC[GA] -------------------------------------------------------------------------------- Time 6.70 secs. ******************************************************************************** ******************************************************************************** MOTIF CGAGAGGA MEME-2 width = 8 sites = 39 llr = 335 E-value = 1.8e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGAGAGGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:9:a:36 pos.-specific C 8::::::2 probability G :a1a:a72 matrix T 1::::::: bits 2.2 * * * 1.9 * *** 1.7 * *** 1.5 * *** Relative 1.3 ****** Entropy 1.1 ******* (12.4 bits) 0.9 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGAGAGGA consensus AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGAGGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:216737-216817 3 1.37e-05 TC CGAGAGGA GTCCACACAA chrIII:7520785-7520865 29 1.37e-05 ATAAGTTGTC CGAGAGGA GTTCACCACA chrIV:16415261-16415341 3 1.37e-05 TC CGAGAGGA GTACACGGCA chrI:3266716-3266796 26 1.37e-05 ACGACTTGTC CGAGAGGA GTACACAGGC chrI:461672-461752 38 1.37e-05 TTAGCTTGTT CGAGAGGA GTTCACAAGC chrIII:11290646-11290726 69 1.37e-05 TATCCTTGTC CGAGAGGA GTAC chrIV:15526627-15526707 9 1.37e-05 TTATTGTC CGAGAGGA GTACACGGTT chrIII:5871887-5871967 44 1.37e-05 aaACGTTGTC CGAGAGGA GTGCACGGCC chrIII:10621391-10621471 21 1.37e-05 aaaaaTCGTT CGAGAGGA GTCCGCAGCG chrII:6913443-6913523 27 1.37e-05 ATTTATTGTC CGAGAGGA GTACACGACT chrIII:5349397-5349477 29 1.37e-05 AAATGCTGTC CGAGAGGA GTCCGCGGGA chrII:10538119-10538199 1 1.37e-05 . CGAGAGGA GTACATGGCC chrI:3987244-3987324 39 1.37e-05 ACGCTTTGTC CGAGAGGA GTACACGGCC chrIII:9868285-9868365 4 1.37e-05 TTC CGAGAGGA CTCCGCCAGA chrIV:16415752-16415832 18 1.37e-05 CTCGTTTGTC CGAGAGGA GTACACGGCC chrV:5425219-5425299 52 1.37e-05 AACGAATTCT CGAGAGGA GCAAACTTCT chrV:13468335-13468415 4 2.56e-05 TTC CGAGAGGG CTACACGACC chrV:13371585-13371665 21 2.56e-05 TTACGCAATT CGAGAGGG TGACAGAGAG chrII:2974059-2974139 31 5.29e-05 TGAGAGAGCG CGAGAGAA CACTGGCGCG chrX:4395582-4395662 61 6.47e-05 GGAGGATGGA CGGGAGGA GAAAGATGGA chrII:10868917-10868997 69 7.85e-05 GGTGGAGGGA CGAGAGAG TGAG chrI:4914114-4914194 72 7.85e-05 AAGAGGGGCC CGAGAGAG A chrIV:15570908-15570988 9 7.85e-05 agatgtga cgagagaG TGTGTAGAAT chrII:10559217-10559297 34 7.85e-05 TTTATTTATT CGAGAGAG CGAATGGGTC chrX:4222912-4222992 52 9.16e-05 GATGAGTGAT CGAGAGAC GGAGACAGGT chrI:13756515-13756595 21 9.16e-05 TAGTAGAGAG CGAGAGAC ACAGAGACTT chrIII:11110898-11110978 45 9.16e-05 TGAAATGCGC CGAGAGAC GGCAGAGAAA chrIII:6421252-6421332 24 1.35e-04 AAGAGCGTAG CGGGAGGG GGTTGTCTTT chrIII:13717724-13717804 38 1.35e-04 tgtgtctgtg tgAGAGGA ACTGCCTGGC chrIII:11946506-11946586 6 1.35e-04 TTGTC TGAGAGGA CTACACTGCG chrX:4524099-4524179 30 1.45e-04 AATGGGGTGC CGGGAGGC GGGGTAGGGG chrIII:5308421-5308501 25 1.45e-04 CACCGGTGGC CGGGAGGC CATGGCCGAG chrV:11764473-11764553 35 1.45e-04 ATACGGTAAT CGGGAGGC AACGTGTTCC chrI:5311854-5311934 31 1.73e-04 CAATCGTCGG AGAGAGGG GGAACGAGAC chrII:4999313-4999393 64 1.87e-04 TTTGCGGAAG AGAGAGGC AAGATGAAA chrIII:11746881-11746961 22 2.01e-04 TCCGCGCAAA TGAGAGGG ACGAGGTGCG chrI:7079562-7079642 69 2.20e-04 Gaagaaagaa agagagaa gaga chrX:13145096-13145176 46 2.20e-04 CAAGAGGGGT AGAGAGAA GTGATAGAAA chrIV:6206521-6206601 27 2.50e-04 ATGCGTTGTC CGAGAGTA GTCCGCGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGAGGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:216737-216817 1.4e-05 2_[+2]_70 chrIII:7520785-7520865 1.4e-05 28_[+2]_44 chrIV:16415261-16415341 1.4e-05 2_[+2]_70 chrI:3266716-3266796 1.4e-05 25_[+2]_47 chrI:461672-461752 1.4e-05 37_[+2]_35 chrIII:11290646-11290726 1.4e-05 68_[+2]_4 chrIV:15526627-15526707 1.4e-05 8_[+2]_64 chrIII:5871887-5871967 1.4e-05 43_[+2]_29 chrIII:10621391-10621471 1.4e-05 20_[+2]_52 chrII:6913443-6913523 1.4e-05 26_[+2]_46 chrIII:5349397-5349477 1.4e-05 28_[+2]_44 chrII:10538119-10538199 1.4e-05 [+2]_72 chrI:3987244-3987324 1.4e-05 38_[+2]_34 chrIII:9868285-9868365 1.4e-05 3_[+2]_69 chrIV:16415752-16415832 1.4e-05 17_[+2]_55 chrV:5425219-5425299 1.4e-05 51_[+2]_21 chrV:13468335-13468415 2.6e-05 3_[+2]_69 chrV:13371585-13371665 2.6e-05 20_[+2]_52 chrII:2974059-2974139 5.3e-05 30_[+2]_42 chrX:4395582-4395662 6.5e-05 60_[+2]_12 chrII:10868917-10868997 7.8e-05 68_[+2]_4 chrI:4914114-4914194 7.8e-05 71_[+2]_1 chrIV:15570908-15570988 7.8e-05 8_[+2]_64 chrII:10559217-10559297 7.8e-05 33_[+2]_39 chrX:4222912-4222992 9.2e-05 51_[+2]_21 chrI:13756515-13756595 9.2e-05 20_[+2]_52 chrIII:11110898-11110978 9.2e-05 44_[+2]_28 chrIII:6421252-6421332 0.00014 23_[+2]_49 chrIII:13717724-13717804 0.00014 37_[+2]_35 chrIII:11946506-11946586 0.00014 5_[+2]_67 chrX:4524099-4524179 0.00014 29_[+2]_43 chrIII:5308421-5308501 0.00014 24_[+2]_48 chrV:11764473-11764553 0.00014 34_[+2]_38 chrI:5311854-5311934 0.00017 30_[+2]_42 chrII:4999313-4999393 0.00019 63_[+2]_9 chrIII:11746881-11746961 0.0002 21_[+2]_51 chrI:7079562-7079642 0.00022 68_[+2]_4 chrX:13145096-13145176 0.00022 45_[+2]_27 chrIV:6206521-6206601 0.00025 26_[+2]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGAGGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGAGAGGA width=8 seqs=39 chrII:216737-216817 ( 3) CGAGAGGA 1 chrIII:7520785-7520865 ( 29) CGAGAGGA 1 chrIV:16415261-16415341 ( 3) CGAGAGGA 1 chrI:3266716-3266796 ( 26) CGAGAGGA 1 chrI:461672-461752 ( 38) CGAGAGGA 1 chrIII:11290646-11290726 ( 69) CGAGAGGA 1 chrIV:15526627-15526707 ( 9) CGAGAGGA 1 chrIII:5871887-5871967 ( 44) CGAGAGGA 1 chrIII:10621391-10621471 ( 21) CGAGAGGA 1 chrII:6913443-6913523 ( 27) CGAGAGGA 1 chrIII:5349397-5349477 ( 29) CGAGAGGA 1 chrII:10538119-10538199 ( 1) CGAGAGGA 1 chrI:3987244-3987324 ( 39) CGAGAGGA 1 chrIII:9868285-9868365 ( 4) CGAGAGGA 1 chrIV:16415752-16415832 ( 18) CGAGAGGA 1 chrV:5425219-5425299 ( 52) CGAGAGGA 1 chrV:13468335-13468415 ( 4) CGAGAGGG 1 chrV:13371585-13371665 ( 21) CGAGAGGG 1 chrII:2974059-2974139 ( 31) CGAGAGAA 1 chrX:4395582-4395662 ( 61) CGGGAGGA 1 chrII:10868917-10868997 ( 69) CGAGAGAG 1 chrI:4914114-4914194 ( 72) CGAGAGAG 1 chrIV:15570908-15570988 ( 9) CGAGAGAG 1 chrII:10559217-10559297 ( 34) CGAGAGAG 1 chrX:4222912-4222992 ( 52) CGAGAGAC 1 chrI:13756515-13756595 ( 21) CGAGAGAC 1 chrIII:11110898-11110978 ( 45) CGAGAGAC 1 chrIII:6421252-6421332 ( 24) CGGGAGGG 1 chrIII:13717724-13717804 ( 38) TGAGAGGA 1 chrIII:11946506-11946586 ( 6) TGAGAGGA 1 chrX:4524099-4524179 ( 30) CGGGAGGC 1 chrIII:5308421-5308501 ( 25) CGGGAGGC 1 chrV:11764473-11764553 ( 35) CGGGAGGC 1 chrI:5311854-5311934 ( 31) AGAGAGGG 1 chrII:4999313-4999393 ( 64) AGAGAGGC 1 chrIII:11746881-11746961 ( 22) TGAGAGGG 1 chrI:7079562-7079642 ( 69) AGAGAGAA 1 chrX:13145096-13145176 ( 46) AGAGAGAA 1 chrIV:6206521-6206601 ( 27) CGAGAGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGAGGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.78941 E= 1.8e-010 -141 187 -1193 -181 -1193 -1193 209 -1193 168 -1193 -87 -1193 -1193 -1193 209 -1193 188 -1193 -1193 -1193 -1193 -1193 209 -1193 -8 -1193 161 -339 112 -32 -2 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGAGGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 1.8e-010 0.102564 0.820513 0.000000 0.076923 0.000000 0.000000 1.000000 0.000000 0.871795 0.000000 0.128205 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.256410 0.000000 0.717949 0.025641 0.589744 0.179487 0.230769 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGAGGA MEME-2 regular expression -------------------------------------------------------------------------------- CGAGAG[GA][AG] -------------------------------------------------------------------------------- Time 10.40 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCCTCTC MEME-3 width = 8 sites = 21 llr = 213 E-value = 4.5e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCCTCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::2::: pos.-specific C a1a9:a:a probability G :::1:::: matrix T :9::8:a: bits 2.2 * * * * 1.9 * * *** 1.7 * ** *** 1.5 **** *** Relative 1.3 **** *** Entropy 1.1 **** *** (14.6 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCCTCTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCTCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:5311854-5311934 70 1.10e-05 TCGAAAGGGA CTCCTCTC CGA chrIII:11746881-11746961 66 1.10e-05 CGCAGGTGTA CTCCTCTC GGAAAAC chrV:18981165-18981245 42 1.10e-05 CGCCGGTGTA CTCCTCTC CGACAACGGG chrI:11374408-11374488 72 1.10e-05 CGGCCGTGTA CTCCTCTC G chrIV:6321903-6321983 21 1.10e-05 CGGCCGTGTA CTCCTCTC GAACAAATTT chrII:4791441-4791521 49 1.10e-05 CGGCCGTGTA CTCCTCTC GGACAATATA chrIII:5722024-5722104 50 1.10e-05 CGGCTGTGTA CTCCTCTC GGACGGGCGA chrV:10717185-10717265 44 1.10e-05 CGAACGGCAC CTCCTCTC ACCAAGGACA chrIV:10483865-10483945 64 1.10e-05 GGTTTGTGGA CTCCTCTC GGATAAACA chrII:9591225-9591305 72 1.10e-05 GCGTCGTGTA CTCCTCTC A chrV:16401710-16401790 31 1.10e-05 CGCGCTCGGA CTCCTCTC GGAGGAGTAT chrII:10538119-10538199 42 1.10e-05 CGGCCGTGTA CTCCTCTC GGGCAATTAA chrV:13468335-13468415 57 2.21e-05 TTGGCGTGTA CTCCACTC GGACTCACGT chrV:10353180-10353260 71 2.21e-05 TACTCGTGAA CTCCACTC GG chrV:11533151-11533231 53 2.21e-05 GGGTTTTCAC CTCCACTC ACTCTTTCTA chrIV:957943-958023 49 2.21e-05 CCTCTACCCC CTCCACTC TCTCGAACCG chrIV:9615646-9615726 68 3.12e-05 CTCGGTTGGT CCCCTCTC TCATT chrIV:1911387-1911467 22 3.12e-05 ATCTAACAAC CCCCTCTC TCTCTCTTCC chrX:16206177-16206257 4 4.27e-05 TAT CTCGTCTC ATAAGAGTAG chrI:9332713-9332793 34 4.27e-05 GAGCCTCATC CTCGTCTC CCCTCCCCAA chrII:4299412-4299492 21 5.23e-05 ACGCTGCGTA CTCCGCTC GGAGAAGGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCTCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:5311854-5311934 1.1e-05 69_[+3]_3 chrIII:11746881-11746961 1.1e-05 65_[+3]_7 chrV:18981165-18981245 1.1e-05 41_[+3]_31 chrI:11374408-11374488 1.1e-05 71_[+3]_1 chrIV:6321903-6321983 1.1e-05 20_[+3]_52 chrII:4791441-4791521 1.1e-05 48_[+3]_24 chrIII:5722024-5722104 1.1e-05 49_[+3]_23 chrV:10717185-10717265 1.1e-05 43_[+3]_29 chrIV:10483865-10483945 1.1e-05 63_[+3]_9 chrII:9591225-9591305 1.1e-05 71_[+3]_1 chrV:16401710-16401790 1.1e-05 30_[+3]_42 chrII:10538119-10538199 1.1e-05 41_[+3]_31 chrV:13468335-13468415 2.2e-05 56_[+3]_16 chrV:10353180-10353260 2.2e-05 70_[+3]_2 chrV:11533151-11533231 2.2e-05 52_[+3]_20 chrIV:957943-958023 2.2e-05 48_[+3]_24 chrIV:9615646-9615726 3.1e-05 67_[+3]_5 chrIV:1911387-1911467 3.1e-05 21_[+3]_51 chrX:16206177-16206257 4.3e-05 3_[+3]_69 chrI:9332713-9332793 4.3e-05 33_[+3]_39 chrII:4299412-4299492 5.2e-05 20_[+3]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCTCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCCTCTC width=8 seqs=21 chrI:5311854-5311934 ( 70) CTCCTCTC 1 chrIII:11746881-11746961 ( 66) CTCCTCTC 1 chrV:18981165-18981245 ( 42) CTCCTCTC 1 chrI:11374408-11374488 ( 72) CTCCTCTC 1 chrIV:6321903-6321983 ( 21) CTCCTCTC 1 chrII:4791441-4791521 ( 49) CTCCTCTC 1 chrIII:5722024-5722104 ( 50) CTCCTCTC 1 chrV:10717185-10717265 ( 44) CTCCTCTC 1 chrIV:10483865-10483945 ( 64) CTCCTCTC 1 chrII:9591225-9591305 ( 72) CTCCTCTC 1 chrV:16401710-16401790 ( 31) CTCCTCTC 1 chrII:10538119-10538199 ( 42) CTCCTCTC 1 chrV:13468335-13468415 ( 57) CTCCACTC 1 chrV:10353180-10353260 ( 71) CTCCACTC 1 chrV:11533151-11533231 ( 53) CTCCACTC 1 chrIV:957943-958023 ( 49) CTCCACTC 1 chrIV:9615646-9615726 ( 68) CCCCTCTC 1 chrIV:1911387-1911467 ( 22) CCCCTCTC 1 chrX:16206177-16206257 ( 4) CTCGTCTC 1 chrI:9332713-9332793 ( 34) CTCGTCTC 1 chrII:4299412-4299492 ( 21) CTCCGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCTCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.6191 E= 4.5e-010 -1104 216 -1104 -1104 -1104 -123 -1104 175 -1104 216 -1104 -1104 -1104 201 -130 -1104 -51 -1104 -230 150 -1104 216 -1104 -1104 -1104 -1104 -1104 189 -1104 216 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCTCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 4.5e-010 0.000000 1.000000 0.000000 0.000000 0.000000 0.095238 0.000000 0.904762 0.000000 1.000000 0.000000 0.000000 0.000000 0.904762 0.095238 0.000000 0.190476 0.000000 0.047619 0.761905 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCTCTC MEME-3 regular expression -------------------------------------------------------------------------------- CTCCTCTC -------------------------------------------------------------------------------- Time 13.99 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTGCGTC MEME-4 width = 8 sites = 14 llr = 140 E-value = 1.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :9:291:a probability G :1:8:9:: matrix T a:a:1:a: bits 2.2 * 1.9 * * ** 1.7 *** **** 1.5 *** **** Relative 1.3 ******** Entropy 1.1 ******** (14.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTGCGTC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:10551986-10552066 63 1.21e-05 TCGGTTTTTC TCTGCGTC GCGTTCAATT chrIV:17249857-17249937 49 1.21e-05 CCAGCAGCTG TCTGCGTC AATGGAGCGC chrIV:2602121-2602201 26 1.21e-05 TCTTTTGATG TCTGCGTC TCACCAGTGT chrI:16963-17043 41 1.21e-05 GTAGCCGCTC TCTGCGTC TCTCACCCTT chrIV:2219589-2219669 32 1.21e-05 GCCAAATGTC TCTGCGTC TCTTGCACGT chrV:6246647-6246727 26 1.21e-05 ATTTTGCCTG TCTGCGTC TTGTCATCAT chrIII:1926541-1926621 47 1.21e-05 CATCGTGCTC TCTGCGTC TCTCGAACCG chrIV:957943-958023 30 1.21e-05 GCTCGTCGTG TCTGCGTC TCCTCTACCC chrIII:11110898-11110978 72 1.21e-05 AAAAAGTGAC TCTGCGTC T chrX:6743913-6743993 57 2.36e-05 TCCGTATCTT TCTCCGTC AGATGATCGC chrII:8410445-8410525 60 2.36e-05 ATGTCCGCAA TCTCCGTC TCTTCCAATC chrX:11207078-11207158 50 4.78e-05 GTGCACGGTT TGTGCGTC TTCCTATCGC chrIV:7486359-7486439 30 6.23e-05 ACACAGAGTC TCTGTGTC TCAAATTTAC chrII:14405243-14405323 47 7.33e-05 GTATATGCCG TCTCCCTC TCCTCGGGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:10551986-10552066 1.2e-05 62_[+4]_10 chrIV:17249857-17249937 1.2e-05 48_[+4]_24 chrIV:2602121-2602201 1.2e-05 25_[+4]_47 chrI:16963-17043 1.2e-05 40_[+4]_32 chrIV:2219589-2219669 1.2e-05 31_[+4]_41 chrV:6246647-6246727 1.2e-05 25_[+4]_47 chrIII:1926541-1926621 1.2e-05 46_[+4]_26 chrIV:957943-958023 1.2e-05 29_[+4]_43 chrIII:11110898-11110978 1.2e-05 71_[+4]_1 chrX:6743913-6743993 2.4e-05 56_[+4]_16 chrII:8410445-8410525 2.4e-05 59_[+4]_13 chrX:11207078-11207158 4.8e-05 49_[+4]_23 chrIV:7486359-7486439 6.2e-05 29_[+4]_43 chrII:14405243-14405323 7.3e-05 46_[+4]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTGCGTC width=8 seqs=14 chrII:10551986-10552066 ( 63) TCTGCGTC 1 chrIV:17249857-17249937 ( 49) TCTGCGTC 1 chrIV:2602121-2602201 ( 26) TCTGCGTC 1 chrI:16963-17043 ( 41) TCTGCGTC 1 chrIV:2219589-2219669 ( 32) TCTGCGTC 1 chrV:6246647-6246727 ( 26) TCTGCGTC 1 chrIII:1926541-1926621 ( 47) TCTGCGTC 1 chrIV:957943-958023 ( 30) TCTGCGTC 1 chrIII:11110898-11110978 ( 72) TCTGCGTC 1 chrX:6743913-6743993 ( 57) TCTCCGTC 1 chrII:8410445-8410525 ( 60) TCTCCGTC 1 chrX:11207078-11207158 ( 50) TGTGCGTC 1 chrIV:7486359-7486439 ( 30) TCTGTGTC 1 chrII:14405243-14405323 ( 47) TCTCCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 1.0e+000 -1045 -1045 -1045 189 -1045 205 -171 -1045 -1045 -1045 -1045 189 -1045 -7 174 -1045 -1045 205 -1045 -191 -1045 -165 198 -1045 -1045 -1045 -1045 189 -1045 216 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.0e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.214286 0.785714 0.000000 0.000000 0.928571 0.000000 0.071429 0.000000 0.071429 0.928571 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 regular expression -------------------------------------------------------------------------------- TCT[GC]CGTC -------------------------------------------------------------------------------- Time 17.55 secs. ******************************************************************************** ******************************************************************************** MOTIF AAACGCGC MEME-5 width = 8 sites = 27 llr = 234 E-value = 1.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAACGCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 8a6::::: pos.-specific C ::17:9:9 probability G 2:3:a:a: matrix T :::3:1:1 bits 2.2 * * 1.9 * * * 1.7 * *** 1.5 * **** Relative 1.3 ** ***** Entropy 1.1 ** ***** (12.5 bits) 0.9 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACGCGC consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACGCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:14685700-14685780 42 1.25e-05 CAGGTGCTGA AAACGCGC TCTATTGACA chrV:2600785-2600865 9 1.25e-05 CGAAAAGC AAACGCGC TCTGTTGAAC chrIV:5183820-5183900 29 1.25e-05 CAAAAACGGA AAACGCGC AAAGAGCGAG chrIV:2676425-2676505 52 1.25e-05 CGCGTGCGAG AAACGCGC CAGCACCGTA chrV:20580666-20580746 27 1.25e-05 CAAAATCGGC AAACGCGC CAGCAACCGC chrV:12870088-12870168 43 1.25e-05 ATGGAAGAGA AAACGCGC GCACTTCCTC chrIV:15526627-15526707 68 1.25e-05 ACAAAGCTGA AAACGCGC GAAAT chrIII:10845040-10845120 22 1.25e-05 GCGCATCAAG AAACGCGC AAGCATAATA chrII:2889340-2889420 38 2.33e-05 GATTTTAGGC AAGCGCGC TCTATGGAGA chrV:2638659-2638739 60 3.83e-05 GCGGCCGTGA AAATGCGC GCTGCGGACT chrIII:11110898-11110978 37 3.83e-05 CCTGCGCGTG AAATGCGC CGAGAGACGG chrV:9789966-9790046 33 4.91e-05 GTGTCACGAA GAACGCGC CAGCAAGCGA chrIV:4513634-4513714 41 6.20e-05 GATGGTCGAG AAGTGCGC CAGCGTCGGG chrI:11930117-11930197 34 6.20e-05 CACTCACGAG AAGTGCGC AAGCGAGCGT chrIII:10707171-10707251 46 6.20e-05 AGTGCACCGG AAGTGCGC AAGCAGTTGA chrIV:4049672-4049752 9 6.20e-05 CATTCAAA AAGTGCGC CAGCAGTCGT chrII:216737-216817 35 8.16e-05 GTGTGCGGTA GAGCGCGC TTGCCATTTT chrIV:17249857-17249937 61 8.16e-05 TGCGTCAATG GAGCGCGC TTGCATTTTC chrII:13199855-13199935 41 8.16e-05 GAATCGTGAA AACCGCGC GTGTTTCCCA chrII:2974059-2974139 73 8.16e-05 AGAGGGCGCC GAGCGCGC chrII:4791441-4791521 3 8.16e-05 AC AACCGCGC ACTGTGGCCT chrII:14059949-14060029 18 9.46e-05 AGGGCACCGA GAATGCGC TAGCAGTCAT chrII:4942548-4942628 7 1.10e-04 ACGGGC AAACGCGT TACCACTGCG chrI:16963-17043 21 1.10e-04 TTGCGTCGAG AAACGCGT CAGTAGCCGC chrV:5425219-5425299 26 1.25e-04 AAAATGATGA AAACGTGC GATAAGTCAA chrV:13556837-13556917 38 1.83e-04 CACTCAAGAA AAACGCGG CTGTTCAAAT chrIII:13780583-13780663 63 2.43e-04 TGGCTATTCA AAATGTGC ACGCAGCGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACGCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:14685700-14685780 1.2e-05 41_[+5]_31 chrV:2600785-2600865 1.2e-05 8_[+5]_64 chrIV:5183820-5183900 1.2e-05 28_[+5]_44 chrIV:2676425-2676505 1.2e-05 51_[+5]_21 chrV:20580666-20580746 1.2e-05 26_[+5]_46 chrV:12870088-12870168 1.2e-05 42_[+5]_30 chrIV:15526627-15526707 1.2e-05 67_[+5]_5 chrIII:10845040-10845120 1.2e-05 21_[+5]_51 chrII:2889340-2889420 2.3e-05 37_[+5]_35 chrV:2638659-2638739 3.8e-05 59_[+5]_13 chrIII:11110898-11110978 3.8e-05 36_[+5]_36 chrV:9789966-9790046 4.9e-05 32_[+5]_40 chrIV:4513634-4513714 6.2e-05 40_[+5]_32 chrI:11930117-11930197 6.2e-05 33_[+5]_39 chrIII:10707171-10707251 6.2e-05 45_[+5]_27 chrIV:4049672-4049752 6.2e-05 8_[+5]_64 chrII:216737-216817 8.2e-05 34_[+5]_38 chrIV:17249857-17249937 8.2e-05 60_[+5]_12 chrII:13199855-13199935 8.2e-05 40_[+5]_32 chrII:2974059-2974139 8.2e-05 72_[+5] chrII:4791441-4791521 8.2e-05 2_[+5]_70 chrII:14059949-14060029 9.5e-05 17_[+5]_55 chrII:4942548-4942628 0.00011 6_[+5]_66 chrI:16963-17043 0.00011 20_[+5]_52 chrV:5425219-5425299 0.00012 25_[+5]_47 chrV:13556837-13556917 0.00018 37_[+5]_35 chrIII:13780583-13780663 0.00024 62_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACGCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAACGCGC width=8 seqs=27 chrV:14685700-14685780 ( 42) AAACGCGC 1 chrV:2600785-2600865 ( 9) AAACGCGC 1 chrIV:5183820-5183900 ( 29) AAACGCGC 1 chrIV:2676425-2676505 ( 52) AAACGCGC 1 chrV:20580666-20580746 ( 27) AAACGCGC 1 chrV:12870088-12870168 ( 43) AAACGCGC 1 chrIV:15526627-15526707 ( 68) AAACGCGC 1 chrIII:10845040-10845120 ( 22) AAACGCGC 1 chrII:2889340-2889420 ( 38) AAGCGCGC 1 chrV:2638659-2638739 ( 60) AAATGCGC 1 chrIII:11110898-11110978 ( 37) AAATGCGC 1 chrV:9789966-9790046 ( 33) GAACGCGC 1 chrIV:4513634-4513714 ( 41) AAGTGCGC 1 chrI:11930117-11930197 ( 34) AAGTGCGC 1 chrIII:10707171-10707251 ( 46) AAGTGCGC 1 chrIV:4049672-4049752 ( 9) AAGTGCGC 1 chrII:216737-216817 ( 35) GAGCGCGC 1 chrIV:17249857-17249937 ( 61) GAGCGCGC 1 chrII:13199855-13199935 ( 41) AACCGCGC 1 chrII:2974059-2974139 ( 73) GAGCGCGC 1 chrII:4791441-4791521 ( 3) AACCGCGC 1 chrII:14059949-14060029 ( 18) GAATGCGC 1 chrII:4942548-4942628 ( 7) AAACGCGT 1 chrI:16963-17043 ( 21) AAACGCGT 1 chrV:5425219-5425299 ( 26) AAACGTGC 1 chrV:13556837-13556917 ( 38) AAACGCGG 1 chrIII:13780583-13780663 ( 63) AAATGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACGCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.9683 E= 1.2e+000 158 -1140 -34 -1140 188 -1140 -1140 -1140 121 -160 34 -1140 -1140 165 -1140 14 -1140 -1140 209 -1140 -1140 205 -1140 -186 -1140 -1140 209 -1140 -1140 199 -266 -186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACGCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.2e+000 0.814815 0.000000 0.185185 0.000000 1.000000 0.000000 0.000000 0.000000 0.629630 0.074074 0.296296 0.000000 0.000000 0.703704 0.000000 0.296296 0.000000 0.000000 1.000000 0.000000 0.000000 0.925926 0.000000 0.074074 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.037037 0.074074 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACGCGC MEME-5 regular expression -------------------------------------------------------------------------------- AA[AG][CT]GCGC -------------------------------------------------------------------------------- Time 21.09 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8986053-8986133 5.60e-02 5_[+4(8.54e-05)]_67 chrII:8415622-8415702 9.94e-01 80 chrV:5425219-5425299 3.74e-03 51_[+2(1.37e-05)]_21 chrIV:1911387-1911467 2.38e-03 21_[+3(3.12e-05)]_51 chrIV:4401064-4401144 3.30e-01 80 chrIV:9615646-9615726 8.89e-02 67_[+3(3.12e-05)]_5 chrI:231909-231989 2.90e-01 80 chrII:10382284-10382364 8.67e-02 80 chrV:13081426-13081506 8.43e-01 80 chrX:12671797-12671877 7.53e-01 80 chrIII:13780583-13780663 2.81e-01 80 chrIV:8334079-8334159 2.58e-01 80 chrII:8409655-8409735 1.07e-01 80 chrIII:13187916-13187996 4.29e-01 80 chrX:14500523-14500603 5.20e-01 80 chrI:13421168-13421248 4.67e-01 80 chrII:12006810-12006890 1.09e-01 80 chrX:16266187-16266267 8.06e-01 80 chrIV:7488069-7488149 9.73e-01 80 chrI:1273932-1274012 2.06e-02 80 chrIV:16415752-16415832 2.34e-03 17_[+2(1.37e-05)]_3_[+1(5.09e-05)]_\ 44 chrX:14487548-14487628 1.44e-01 80 chrX:12511600-12511680 2.67e-01 80 chrIII:6132172-6132252 6.65e-01 80 chrV:16040599-16040679 7.47e-01 80 chrV:12295775-12295855 5.88e-01 80 chrII:10559217-10559297 1.56e-01 33_[+2(7.85e-05)]_39 chrI:13422869-13422949 3.80e-01 80 chrIII:7645279-7645359 8.80e-01 80 chrIII:4284856-4284936 2.77e-01 80 chrIV:9790876-9790956 9.09e-01 80 chrIII:9868285-9868365 6.17e-05 3_[+2(1.37e-05)]_34_[+1(8.85e-05)]_\ 27 chrIII:11091766-11091846 8.58e-01 80 chrI:9332713-9332793 7.27e-02 33_[+3(4.27e-05)]_23_[+3(8.28e-05)]_\ 8 chrIV:13695909-13695989 4.00e-01 80 chrIII:2876086-2876166 2.56e-01 80 chrV:5917863-5917943 1.01e-01 80 chrII:8410445-8410525 1.21e-02 59_[+4(2.36e-05)]_13 chrX:10769486-10769566 9.22e-01 80 chrI:4769666-4769746 7.43e-02 80 chrI:4322845-4322925 4.31e-01 80 chrIII:6364511-6364591 9.70e-01 80 chrIII:12273795-12273875 1.55e-01 10_[+1(4.20e-05)]_62 chrII:13117260-13117340 2.06e-02 54_[+1(4.20e-05)]_18 chrIII:11110898-11110978 2.80e-05 36_[+5(3.83e-05)]_[+2(9.16e-05)]_19_\ [+4(1.21e-05)]_1 chrIII:7300273-7300353 6.96e-01 80 chrI:6996018-6996098 9.98e-01 80 chrI:3987244-3987324 2.47e-03 16_[+2(1.37e-05)]_14_[+2(1.37e-05)]_\ 3_[+1(5.09e-05)]_23 chrII:9285099-9285179 4.23e-01 80 chrII:9064622-9064702 4.06e-01 80 chrII:10538119-10538199 1.68e-06 [+2(1.37e-05)]_21_[+1(8.79e-06)]_4_\ [+3(1.10e-05)]_31 chrX:14790363-14790443 6.24e-01 80 chrIV:9672625-9672705 8.55e-01 80 chrX:2709376-2709456 9.11e-01 80 chrIV:15570908-15570988 8.42e-02 8_[+2(7.85e-05)]_64 chrX:11339598-11339678 7.65e-01 80 chrV:16401710-16401790 7.75e-04 3_[+1(5.86e-05)]_19_[+3(1.10e-05)]_\ 42 chrII:7945296-7945376 2.76e-01 80 chrV:19686379-19686459 2.76e-01 80 chrIV:16400526-16400606 8.33e-01 80 chrIII:5349397-5349477 1.11e-03 28_[+2(1.37e-05)]_28_[+1(4.20e-05)]_\ 8 chrIV:2663144-2663224 9.79e-01 80 chrII:6061653-6061733 2.53e-02 80 chrV:15082447-15082527 4.23e-02 55_[+1(2.96e-05)]_17 chrIII:11090434-11090514 7.63e-01 80 chrX:15327340-15327420 3.34e-01 80 chrIII:13779411-13779491 4.84e-02 80 chrII:9591225-9591305 4.49e-04 71_[+3(1.10e-05)]_1 chrIII:8307526-8307606 8.81e-03 15_[+1(5.86e-05)]_57 chrII:2570547-2570627 1.00e+00 80 chrX:6253998-6254078 8.57e-01 80 chrIV:11594261-11594341 7.47e-01 80 chrI:4914114-4914194 2.32e-01 71_[+2(7.85e-05)]_1 chrX:5523149-5523229 1.65e-01 80 chrIII:3983983-3984063 1.38e-01 80 chrX:13539893-13539973 2.28e-01 80 chrII:6822559-6822639 9.08e-01 80 chrV:2638659-2638739 3.99e-03 48_[+1(5.86e-05)]_3_[+5(3.83e-05)]_\ 13 chrII:6913443-6913523 3.24e-04 26_[+2(1.37e-05)]_27_[+1(2.96e-05)]_\ 11 chrV:8535067-8535147 3.21e-02 80 chrV:10342001-10342081 2.03e-01 80 chrV:13380334-13380414 4.88e-01 80 chrV:6254106-6254186 6.87e-01 80 chrI:15013995-15014075 2.82e-02 10_[+1(1.90e-05)]_21_[+1(4.20e-05)]_\ 33 chrX:7825839-7825919 7.95e-01 80 chrII:7802108-7802188 5.43e-01 80 chrIV:7103490-7103570 3.07e-01 80 chrV:11764473-11764553 8.73e-02 80 chrIII:10621391-10621471 1.28e-03 20_[+2(1.37e-05)]_52 chrV:12510128-12510208 9.06e-01 80 chrIV:866855-866935 7.78e-01 80 chrX:12500824-12500904 9.77e-01 80 chrII:4999313-4999393 1.90e-01 80 chrIII:5871887-5871967 1.37e-03 18_[+2(7.85e-05)]_17_[+2(1.37e-05)]_\ 3_[+1(5.09e-05)]_18 chrX:1909541-1909621 2.61e-01 80 chrIV:957943-958023 1.14e-03 29_[+4(1.21e-05)]_11_[+3(2.21e-05)]_\ 24 chrX:3788671-3788751 4.07e-01 80 chrX:4395582-4395662 6.19e-02 60_[+2(6.47e-05)]_12 chrX:12515967-12516047 9.88e-01 80 chrV:11533151-11533231 3.71e-02 52_[+3(2.21e-05)]_20 chrX:17428063-17428143 1.95e-01 80 chrIII:11946506-11946586 2.52e-02 80 chrX:7181749-7181829 8.37e-01 80 chrIII:10845040-10845120 6.25e-02 21_[+5(1.25e-05)]_51 chrX:6743913-6743993 1.10e-01 56_[+4(2.36e-05)]_16 chrIII:5308421-5308501 8.70e-02 80 chrIV:13704195-13704275 6.95e-01 80 chrIV:15526627-15526707 1.82e-05 8_[+2(1.37e-05)]_14_[+2(1.37e-05)]_\ 3_[+1(5.09e-05)]_18_[+5(1.25e-05)]_5 chrI:8245520-8245600 5.18e-01 80 chrV:8247821-8247901 8.92e-01 80 chrIV:10483865-10483945 1.00e-03 44_[+1(1.90e-05)]_11_[+3(1.10e-05)]_\ 9 chrIV:9670158-9670238 1.78e-01 80 chrV:12870088-12870168 2.58e-03 42_[+5(1.25e-05)]_30 chrIV:2999006-2999086 9.01e-01 80 chrII:411022-411102 1.29e-01 80 chrV:10717185-10717265 1.54e-02 43_[+3(1.10e-05)]_29 chrV:15661066-15661146 8.26e-01 80 chrV:10353180-10353260 2.42e-03 70_[+3(2.21e-05)]_2 chrIII:13717724-13717804 1.28e-02 80 chrII:15089583-15089663 1.42e-01 25_[+1(4.20e-05)]_[+1(5.86e-05)]_39 chrII:3553623-3553703 1.00e+00 80 chrIII:8529144-8529224 9.29e-02 80 chrIII:1951627-1951707 3.27e-02 80 chrV:13313231-13313311 4.44e-02 17_[+1(2.96e-05)]_55 chrIV:11489951-11490031 5.84e-01 80 chrX:14490128-14490208 1.19e-01 72_[+1(7.96e-05)] chrX:13514551-13514631 9.19e-01 80 chrV:10526068-10526148 3.11e-01 80 chrX:1504920-1505000 1.24e-01 80 chrV:13371585-13371665 1.34e-01 20_[+2(2.56e-05)]_52 chrI:2299622-2299702 4.26e-02 80 chrIII:5722024-5722104 1.08e-03 30_[+1(4.20e-05)]_11_[+3(1.10e-05)]_\ 23 chrI:10553911-10553991 7.79e-01 80 chrIV:796728-796808 1.00e+00 80 chrI:6835671-6835751 6.56e-01 80 chrX:2364886-2364966 9.83e-01 80 chrV:13556837-13556917 4.59e-04 18_[+1(4.20e-05)]_54 chrIII:11290646-11290726 1.61e-02 68_[+2(1.37e-05)]_4 chrI:14070798-14070878 2.84e-01 80 chrX:6750262-6750342 3.41e-02 80 chrV:13468335-13468415 7.92e-07 3_[+2(2.56e-05)]_25_[+1(4.20e-05)]_\ 12_[+3(2.21e-05)]_16 chrII:14405243-14405323 2.29e-02 46_[+4(7.33e-05)]_26 chrX:11207078-11207158 8.90e-02 49_[+4(4.78e-05)]_23 chrIII:13296588-13296668 2.38e-01 80 chrI:9988936-9989016 6.55e-02 80 chrIII:5068944-5069024 2.21e-01 80 chrV:14055182-14055262 1.25e-01 80 chrX:8650690-8650770 3.16e-02 80 chrII:13829326-13829406 5.64e-01 80 chrIII:1926541-1926621 6.25e-03 46_[+4(1.21e-05)]_26 chrX:17544481-17544561 3.88e-01 80 chrX:3678911-3678991 2.80e-01 80 chrII:4791441-4791521 1.08e-05 2_[+5(8.16e-05)]_19_[+1(8.79e-06)]_\ 11_[+3(1.10e-05)]_24 chrI:461672-461752 5.04e-04 37_[+2(1.37e-05)]_27_[+1(5.86e-05)] chrI:3266716-3266796 8.10e-03 25_[+2(1.37e-05)]_47 chrI:13756515-13756595 2.89e-02 20_[+2(9.16e-05)]_52 chrIII:6421252-6421332 1.58e-01 80 chrIII:3476361-3476441 1.00e+00 80 chrIV:4049672-4049752 2.52e-02 8_[+5(6.20e-05)]_64 chrII:2889340-2889420 2.65e-03 12_[+1(5.86e-05)]_17_[+5(2.33e-05)]_\ 19_[+1(8.85e-05)]_8 chrIV:6321903-6321983 2.74e-03 20_[+3(1.10e-05)]_52 chrIV:14611282-14611362 1.71e-02 80 chrV:9789966-9790046 1.09e-02 32_[+5(4.91e-05)]_40 chrV:6100731-6100811 1.54e-01 80 chrII:4299412-4299492 5.16e-02 20_[+3(5.23e-05)]_52 chrIII:7272349-7272429 2.01e-01 80 chrX:4222912-4222992 6.65e-02 51_[+2(9.16e-05)]_21 chrX:16206177-16206257 8.27e-03 3_[+3(4.27e-05)]_69 chrI:11374408-11374488 4.90e-05 59_[+1(8.79e-06)]_4_[+3(1.10e-05)]_\ 1 chrI:1067179-1067259 9.07e-01 80 chrIV:7486359-7486439 1.45e-01 29_[+4(6.23e-05)]_43 chrIV:16415261-16415341 5.44e-03 2_[+2(1.37e-05)]_70 chrV:13715426-13715506 1.43e-01 80 chrV:15766350-15766430 2.41e-01 80 chrV:18981165-18981245 3.00e-04 22_[+1(4.20e-05)]_11_[+3(1.10e-05)]_\ 31 chrII:14050642-14050722 5.08e-02 80 chrII:10868917-10868997 6.23e-02 68_[+2(7.85e-05)]_4 chrII:4044528-4044608 5.80e-01 80 chrV:6246647-6246727 4.53e-02 25_[+4(1.21e-05)]_47 chrIII:8904214-8904294 4.06e-01 80 chrIII:1681183-1681263 5.13e-01 80 chrV:20580666-20580746 1.18e-03 26_[+5(1.25e-05)]_46 chrIII:7520785-7520865 1.87e-03 28_[+2(1.37e-05)]_35_[+1(4.20e-05)]_\ 1 chrX:1389580-1389660 9.26e-01 80 chrII:6776806-6776886 8.79e-01 80 chrII:5661269-5661349 4.99e-01 80 chrV:8349106-8349186 2.08e-01 80 chrIII:11119425-11119505 4.42e-01 80 chrIV:2676425-2676505 3.91e-03 51_[+5(1.25e-05)]_21 chrIII:10707171-10707251 9.52e-02 45_[+5(6.20e-05)]_27 chrX:4524099-4524179 7.60e-03 12_[+1(6.88e-05)]_60 chrIV:3636705-3636785 4.40e-01 80 chrIII:11746881-11746961 2.12e-03 65_[+3(1.10e-05)]_7 chrIV:2219589-2219669 2.51e-02 31_[+4(1.21e-05)]_41 chrII:2974059-2974139 5.49e-03 30_[+2(5.29e-05)]_34_[+5(8.16e-05)] chrI:16963-17043 3.69e-05 40_[+4(1.21e-05)]_32 chrIV:5183820-5183900 2.39e-03 28_[+5(1.25e-05)]_44 chrX:11644071-11644151 6.68e-01 80 chrI:10565428-10565508 2.80e-01 80 chrI:5164993-5165073 5.53e-01 80 chrIV:12372037-12372117 1.90e-01 80 chrV:13678564-13678644 8.49e-01 80 chrII:8185151-8185231 7.85e-02 80 chrIII:10407446-10407526 2.66e-03 72_[+1(6.88e-05)] chrIV:8973732-8973812 4.16e-02 7_[+1(5.86e-05)]_65 chrI:13369912-13369992 1.66e-01 7_[+1(4.20e-05)]_65 chrI:5311854-5311934 2.42e-03 69_[+3(1.10e-05)]_3 chrIV:2602121-2602201 2.69e-02 25_[+4(1.21e-05)]_21_[+4(1.21e-05)]_\ 18 chrIV:6206521-6206601 3.96e-04 53_[+1(4.20e-05)]_11_[+1(1.90e-05)] chrII:11980309-11980389 3.34e-01 80 chrIV:14825040-14825120 9.20e-01 80 chrX:6737648-6737728 5.62e-01 80 chrX:15849666-15849746 9.92e-02 58_[+1(4.20e-05)]_14 chrIII:8447147-8447227 9.35e-01 80 chrV:8228948-8229028 2.94e-01 80 chrX:10145228-10145308 8.74e-01 80 chrV:1004018-1004098 8.86e-01 80 chrIV:15471599-15471679 1.27e-01 80 chrI:11930117-11930197 2.96e-03 33_[+5(6.20e-05)]_39 chrV:11521552-11521632 6.80e-01 80 chrII:4740171-4740251 6.89e-02 12_[+1(4.20e-05)]_60 chrIV:9511451-9511531 8.04e-01 80 chrIV:9074357-9074437 6.41e-01 80 chrII:15025933-15026013 4.06e-01 80 chrI:11934120-11934200 9.99e-01 80 chrI:9163465-9163545 9.18e-01 80 chrX:13145096-13145176 4.02e-01 80 chrII:13199855-13199935 5.15e-02 40_[+5(8.16e-05)]_32 chrIV:4513634-4513714 3.88e-02 40_[+5(6.20e-05)]_32 chrII:5599810-5599890 9.71e-01 80 chrV:14347363-14347443 4.38e-01 80 chrI:8409953-8410033 9.89e-02 80 chrIII:1923666-1923746 8.23e-01 80 chrII:10301003-10301083 3.99e-01 80 chrII:14059949-14060029 5.37e-02 17_[+5(9.46e-05)]_55 chrII:14795108-14795188 7.77e-01 80 chrIV:17249857-17249937 7.27e-04 13_[+4(4.78e-05)]_27_[+4(1.21e-05)]_\ 4_[+5(8.16e-05)]_12 chrIV:15646617-15646697 6.36e-01 80 chrII:4942548-4942628 1.03e-01 80 chrV:2600785-2600865 1.71e-02 8_[+5(1.25e-05)]_64 chrII:216737-216817 1.66e-03 2_[+2(1.37e-05)]_24_[+5(8.16e-05)]_\ 38 chrX:1345020-1345100 6.71e-02 80 chrII:10551986-10552066 1.07e-01 62_[+4(1.21e-05)]_10 chrI:13663362-13663442 8.29e-01 80 chrIII:9668166-9668246 3.90e-01 80 chrV:14685700-14685780 4.28e-03 41_[+5(1.25e-05)]_31 chrX:16056552-16056632 3.80e-01 80 chrX:10377796-10377876 2.89e-01 80 chrI:7079562-7079642 1.11e-01 80 chrII:6968557-6968637 5.31e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************