******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/efl-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:11599910-11599990 1.0000 80 chrI:14163339-14163419 1.0000 80 chrIV:10697725-10697805 1.0000 80 chrII:2638216-2638296 1.0000 80 chrII:1437711-1437791 1.0000 80 chrIV:15382699-15382779 1.0000 80 chrV:12450599-12450679 1.0000 80 chrII:2032441-2032521 1.0000 80 chrIII:9089599-9089679 1.0000 80 chrIV:8869798-8869878 1.0000 80 chrIV:9403952-9404032 1.0000 80 chrV:14456770-14456850 1.0000 80 chrV:12184465-12184545 1.0000 80 chrIV:11125763-11125843 1.0000 80 chrI:5138057-5138137 1.0000 80 chrIV:992130-992210 1.0000 80 chrI:14839825-14839905 1.0000 80 chrIV:773085-773165 1.0000 80 chrIV:1177841-1177921 1.0000 80 chrI:534291-534371 1.0000 80 chrI:4829885-4829965 1.0000 80 chrIII:12278916-12278996 1.0000 80 chrV:15395073-15395153 1.0000 80 chrI:5189986-5190066 1.0000 80 chrI:3910669-3910749 1.0000 80 chrI:7643292-7643372 1.0000 80 chrV:6043432-6043512 1.0000 80 chrI:6626878-6626958 1.0000 80 chrII:10783359-10783439 1.0000 80 chrIII:5483858-5483938 1.0000 80 chrIII:11565760-11565840 1.0000 80 chrIII:12377423-12377503 1.0000 80 chrI:7940752-7940832 1.0000 80 chrIV:2275740-2275820 1.0000 80 chrIII:8614660-8614740 1.0000 80 chrII:12185015-12185095 1.0000 80 chrIV:4357440-4357520 1.0000 80 chrIII:3921818-3921898 1.0000 80 chrIV:2670816-2670896 1.0000 80 chrII:9108637-9108717 1.0000 80 chrII:10579024-10579104 1.0000 80 chrI:14560364-14560444 1.0000 80 chrI:3865993-3866073 1.0000 80 chrII:12678600-12678680 1.0000 80 chrII:10350627-10350707 1.0000 80 chrIII:2331368-2331448 1.0000 80 chrIII:10093251-10093331 1.0000 80 chrIII:1207999-1208079 1.0000 80 chrI:5871988-5872068 1.0000 80 chrIII:11580669-11580749 1.0000 80 chrV:5596547-5596627 1.0000 80 chrIV:7478280-7478360 1.0000 80 chrIII:9614363-9614443 1.0000 80 chrV:1893053-1893133 1.0000 80 chrV:3743349-3743429 1.0000 80 chrV:13437635-13437715 1.0000 80 chrV:18086934-18087014 1.0000 80 chrI:9581601-9581681 1.0000 80 chrIII:3070167-3070247 1.0000 80 chrI:1895078-1895158 1.0000 80 chrIII:4058061-4058141 1.0000 80 chrIII:12534053-12534133 1.0000 80 chrI:719961-720041 1.0000 80 chrI:13161930-13162010 1.0000 80 chrI:10633210-10633290 1.0000 80 chrI:4788974-4789054 1.0000 80 chrI:3605759-3605839 1.0000 80 chrIV:2902112-2902192 1.0000 80 chrI:3600860-3600940 1.0000 80 chrII:13083902-13083982 1.0000 80 chrIII:5587092-5587172 1.0000 80 chrV:12246257-12246337 1.0000 80 chrIV:12334870-12334950 1.0000 80 chrV:4339648-4339728 1.0000 80 chrV:14734485-14734565 1.0000 80 chrII:6245456-6245536 1.0000 80 chrII:6321170-6321250 1.0000 80 chrI:12426864-12426944 1.0000 80 chrIII:12152301-12152381 1.0000 80 chrIV:6369673-6369753 1.0000 80 chrIII:6869441-6869521 1.0000 80 chrIII:9571037-9571117 1.0000 80 chrIII:7074131-7074211 1.0000 80 chrII:8940497-8940577 1.0000 80 chrIII:6889519-6889599 1.0000 80 chrV:14645957-14646037 1.0000 80 chrIII:491247-491327 1.0000 80 chrI:5319323-5319403 1.0000 80 chrII:2919247-2919327 1.0000 80 chrIII:11974581-11974661 1.0000 80 chrV:11733660-11733740 1.0000 80 chrI:4302354-4302434 1.0000 80 chrIV:10242870-10242950 1.0000 80 chrIII:5959188-5959268 1.0000 80 chrII:5501455-5501535 1.0000 80 chrII:4828215-4828295 1.0000 80 chrV:156527-156607 1.0000 80 chrV:9645653-9645733 1.0000 80 chrV:15578516-15578596 1.0000 80 chrI:13840030-13840110 1.0000 80 chrV:5204333-5204413 1.0000 80 chrI:3741265-3741345 1.0000 80 chrI:8082928-8083008 1.0000 80 chrI:6038162-6038242 1.0000 80 chrIII:2805243-2805323 1.0000 80 chrIII:9747320-9747400 1.0000 80 chrIV:7165870-7165950 1.0000 80 chrV:5939671-5939751 1.0000 80 chrII:2204242-2204322 1.0000 80 chrI:10185768-10185848 1.0000 80 chrIII:5405778-5405858 1.0000 80 chrI:9962095-9962175 1.0000 80 chrIII:8628535-8628615 1.0000 80 chrI:509971-510051 1.0000 80 chrI:15035926-15036006 1.0000 80 chrIII:10248581-10248661 1.0000 80 chrII:8276252-8276332 1.0000 80 chrIV:2613290-2613370 1.0000 80 chrI:3466844-3466924 1.0000 80 chrIII:9776088-9776168 1.0000 80 chrII:9706361-9706441 1.0000 80 chrIII:6968441-6968521 1.0000 80 chrII:9319515-9319595 1.0000 80 chrI:10565992-10566072 1.0000 80 chrIV:5188206-5188286 1.0000 80 chrV:8302696-8302776 1.0000 80 chrI:7559634-7559714 1.0000 80 chrI:4747525-4747605 1.0000 80 chrI:5937102-5937182 1.0000 80 chrII:6974185-6974265 1.0000 80 chrIV:3011814-3011894 1.0000 80 chrIV:9104503-9104583 1.0000 80 chrIV:9386184-9386264 1.0000 80 chrIII:4878418-4878498 1.0000 80 chrIII:8809720-8809800 1.0000 80 chrII:11106487-11106567 1.0000 80 chrIII:10320933-10321013 1.0000 80 chrII:15208301-15208381 1.0000 80 chrV:6593842-6593922 1.0000 80 chrIV:7632665-7632745 1.0000 80 chrI:12183241-12183321 1.0000 80 chrIII:7068814-7068894 1.0000 80 chrI:348381-348461 1.0000 80 chrIII:6615209-6615289 1.0000 80 chrV:10031547-10031627 1.0000 80 chrIV:1309971-1310051 1.0000 80 chrIII:9228344-9228424 1.0000 80 chrV:19405506-19405586 1.0000 80 chrIII:4785884-4785964 1.0000 80 chrV:7955334-7955414 1.0000 80 chrV:14991002-14991082 1.0000 80 chrV:8031308-8031388 1.0000 80 chrIV:13206038-13206118 1.0000 80 chrIV:11371815-11371895 1.0000 80 chrII:386106-386186 1.0000 80 chrIII:10907849-10907929 1.0000 80 chrV:9930766-9930846 1.0000 80 chrIV:11142615-11142695 1.0000 80 chrII:11132697-11132777 1.0000 80 chrIII:1533249-1533329 1.0000 80 chrII:11440335-11440415 1.0000 80 chrIII:13341045-13341125 1.0000 80 chrIII:13439565-13439645 1.0000 80 chrI:13367727-13367807 1.0000 80 chrII:8566237-8566317 1.0000 80 chrI:4788562-4788642 1.0000 80 chrI:2010514-2010594 1.0000 80 chrIII:5989545-5989625 1.0000 80 chrIII:9912638-9912718 1.0000 80 chrIII:2477472-2477552 1.0000 80 chrI:9226836-9226916 1.0000 80 chrII:10714387-10714467 1.0000 80 chrV:12271614-12271694 1.0000 80 chrI:8852322-8852402 1.0000 80 chrIII:12739092-12739172 1.0000 80 chrIV:7946619-7946699 1.0000 80 chrV:20704160-20704240 1.0000 80 chrIII:4986962-4987042 1.0000 80 chrI:14101166-14101246 1.0000 80 chrI:8018589-8018669 1.0000 80 chrIII:6710168-6710248 1.0000 80 chrIII:2769228-2769308 1.0000 80 chrIII:5190345-5190425 1.0000 80 chrV:16499176-16499256 1.0000 80 chrIII:9947165-9947245 1.0000 80 chrV:8248-8328 1.0000 80 chrII:9242975-9243055 1.0000 80 chrIV:12854892-12854972 1.0000 80 chrV:19119381-19119461 1.0000 80 chrIV:8112782-8112862 1.0000 80 chrIII:9848768-9848848 1.0000 80 chrI:2830388-2830468 1.0000 80 chrV:6838756-6838836 1.0000 80 chrV:965038-965118 1.0000 80 chrIV:17461479-17461559 1.0000 80 chrIII:6009045-6009125 1.0000 80 chrIV:1239876-1239956 1.0000 80 chrV:10813880-10813960 1.0000 80 chrI:6970268-6970348 1.0000 80 chrIV:12079041-12079121 1.0000 80 chrI:3438938-3439018 1.0000 80 chrIV:874832-874912 1.0000 80 chrII:9169630-9169710 1.0000 80 chrI:2306856-2306936 1.0000 80 chrV:15059717-15059797 1.0000 80 chrII:6536100-6536180 1.0000 80 chrII:14234553-14234633 1.0000 80 chrI:10591701-10591781 1.0000 80 chrIV:4471082-4471162 1.0000 80 chrIV:4031227-4031307 1.0000 80 chrI:443566-443646 1.0000 80 chrII:11022173-11022253 1.0000 80 chrIII:7952269-7952349 1.0000 80 chrI:3228068-3228148 1.0000 80 chrIII:9794125-9794205 1.0000 80 chrII:2504558-2504638 1.0000 80 chrI:10173222-10173302 1.0000 80 chrIV:2916249-2916329 1.0000 80 chrV:10661601-10661681 1.0000 80 chrIV:9525108-9525188 1.0000 80 chrI:9585240-9585320 1.0000 80 chrI:4958325-4958405 1.0000 80 chrV:8221306-8221386 1.0000 80 chrI:9150328-9150408 1.0000 80 chrIII:9393450-9393530 1.0000 80 chrII:7807073-7807153 1.0000 80 chrIV:2890663-2890743 1.0000 80 chrIII:12528178-12528258 1.0000 80 chrIV:3694822-3694902 1.0000 80 chrV:17538685-17538765 1.0000 80 chrIV:12209164-12209244 1.0000 80 chrI:4451096-4451176 1.0000 80 chrV:15569862-15569942 1.0000 80 chrI:10622859-10622939 1.0000 80 chrIII:5448353-5448433 1.0000 80 chrIII:5499116-5499196 1.0000 80 chrI:13628652-13628732 1.0000 80 chrIV:3213550-3213630 1.0000 80 chrII:8158145-8158225 1.0000 80 chrIV:9777700-9777780 1.0000 80 chrI:13572085-13572165 1.0000 80 chrX:1845654-1845734 1.0000 80 chrI:2773944-2774024 1.0000 80 chrII:14413202-14413282 1.0000 80 chrIV:6548763-6548843 1.0000 80 chrI:3908555-3908635 1.0000 80 chrIII:2401303-2401383 1.0000 80 chrIII:9542972-9543052 1.0000 80 chrIV:5731760-5731840 1.0000 80 chrIII:10642948-10643028 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_efl-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/efl-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.285 C 0.213 G 0.219 T 0.284 Background letter frequencies (from file dataset with add-one prior applied): A 0.285 C 0.213 G 0.219 T 0.284 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF DVGCGCGH MEME-1 width = 8 sites = 232 llr = 1390 E-value = 2.9e-119 ******************************************************************************** -------------------------------------------------------------------------------- Motif DVGCGCGH MEME-1 Description -------------------------------------------------------------------------------- Simplified A 23::::13 pos.-specific C 131a:923 probability G 339:a161 matrix T 31::::13 bits 2.2 ** 2.0 ** 1.8 **** 1.6 **** Relative 1.3 **** Entropy 1.1 **** (8.6 bits) 0.9 **** 0.7 **** 0.4 ***** 0.2 ******* 0.0 -------- Multilevel TCGCGCGA consensus GA C sequence AG T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DVGCGCGH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:2916249-2916329 6 4.73e-06 CTTCT GCGCGCGC ATTCAAATTT chrV:10813880-10813960 44 4.73e-06 TGCATCTGGT GCGCGCGC CGTTCAAAAT chrI:14560364-14560444 16 4.73e-06 AACACCTTCT GCGCGCGC ATTCAAATTT chrII:2032441-2032521 54 4.73e-06 AAATTTGAAT GCGCGCGC AGAAGGTGTT chrV:15059717-15059797 21 1.09e-05 CAGCAAGGTT TCGCGCGC TCGCTCCGTA chrIV:17461479-17461559 25 1.09e-05 ATTTTGGGTT TCGCGCGC TCGTTCAAAC chrIV:12854892-12854972 9 1.09e-05 TTTGAATT TCGCGCGC AAAAAGTGCC chrIII:4878418-4878498 27 1.09e-05 AAATTTGTCT TCGCGCGC TACTCGAAAC chrIV:5188206-5188286 11 1.09e-05 ATTTTTAATT TCGCGCGC AAAAAAAGTT chrIII:10248581-10248661 23 1.09e-05 GAGTTGAATC TCGCGCGC TCTCCTGTTT chrV:18086934-18087014 18 1.09e-05 AATTCGAATT TCGCGCGC ATTTCACCGT chrI:9585240-9585320 34 1.72e-05 AAACTTTCAA GCGCGCGA AAATAGTAAT chrI:10591701-10591781 53 1.72e-05 GCACTCATTT GCGCGCGA AATTCAAATT chrIII:6710168-6710248 58 1.72e-05 ACTAATAAAT GCGCGCGA ATTTTAAAAA chrIV:12334870-12334950 57 1.72e-05 TTGAAAAATT GCGCGCGA AAGTTTCAAG chrI:5138057-5138137 52 1.72e-05 TTTCCAGGGA GCGCGCGA AACACATGCA chrI:3908555-3908635 49 3.03e-05 AGTGCGCATT GGGCGCGC ACACCGAATA chrIII:5190345-5190425 20 3.03e-05 TATTTGAATT TCGCGCGA AAATGAGTGT chrI:15035926-15036006 36 3.03e-05 CCGAAATAAC GGGCGCGC GTGTTGTTTA chrV:156527-156607 43 3.03e-05 ACACTAAACA GGGCGCGC TAACGACACT chrII:2504558-2504638 72 5.54e-05 CGTGCCAATG GAGCGCGC T chrIII:12739092-12739172 53 5.54e-05 ttgttcgatg gagcgcgc ttgctttatt chrIII:8809720-8809800 19 5.54e-05 TTTATCTACG GAGCGCGC TTGCGACAGT chrI:3466844-3466924 51 5.54e-05 TTGTGCGATG GAGCGCGC TTGCTATTTT chrV:11733660-11733740 26 5.54e-05 ATTGTCATTG GAGCGCGC TTTCCCCAAC chrIII:491247-491327 60 5.54e-05 CGTGCcggtg gagcgcgc ttgcattttt chrIII:11565760-11565840 49 5.54e-05 ATTATCGGTG GAGCGCGC ATGCTTTTTT chrIII:12278916-12278996 73 5.54e-05 aatttttttt tggcgcgc chrIV:773085-773165 49 5.54e-05 gagtccagtg gagcgcgc ttgcattttt chrII:11132697-11132777 28 7.83e-05 TTTAGCAATG GGGCGCGA TTGCAGTGTT chrI:12183241-12183321 19 7.83e-05 GAAATAACGC TAGCGCGC TTTGTTTATC chrV:14734485-14734565 42 7.83e-05 ATATGAGGTT TCGCGCGT GGTGTGCGGT chrIII:5448353-5448433 24 1.04e-04 TTTTTTAGGT TGGCGCGA GTTTTTGCAA chrIV:12209164-12209244 22 1.04e-04 ACGGTAAACA ACGCGCGA TTCGTAATCT chrIII:2769228-2769308 43 1.04e-04 TGTTGTTTTT TGGCGCGA ATATTGAATG chrIV:11142615-11142695 49 1.04e-04 GTCAAATTTC ACGCGCGA AATTTAAACA chrIII:9228344-9228424 28 1.04e-04 TAATAGAGGA ACGCGCGA AAACGAGACG chrIV:1309971-1310051 58 1.04e-04 TTTTAAAAAT TGGCGCGA ACGCGCAGGT chrIII:5405778-5405858 18 1.04e-04 CTCTGTTGAC ACGCGCGA GAAAGACGAG chrI:3741265-3741345 54 1.04e-04 CACACATTTT TGGCGCGA GTTTTGAAAA chrII:2919247-2919327 37 1.04e-04 CGCCGGAAGT GAGCGCGA GATTCAAGTT chrIII:7074131-7074211 51 1.04e-04 AGAACCATTT ACGCGCGA AGTTTGAATA chrIV:6369673-6369753 35 1.04e-04 AAACTCATTT TGGCGCGA AATTCAAATT chrIII:7952269-7952349 44 1.32e-04 TCCATAAAAC TAGCGCGA ATTCAAAAAA chrIV:4471082-4471162 4 1.32e-04 GCA GGGCGCGT TGTGCCACTC chrIII:12152301-12152381 52 1.32e-04 TTTATCAACA GGGCGCGT TTGCACTTTT chrIII:9614363-9614443 52 1.32e-04 GTGTACAACA GGGCGCGT TTGCATTATT chrIV:2670816-2670896 50 1.32e-04 GCGTGTTGTT TAGCGCGA GCTTTTTTCC chrIII:9542972-9543052 63 1.65e-04 CGTAACGATA GAGCGCGT TTACATCATT chrIV:3694822-3694902 11 1.65e-04 GTAAAAATGC AAGCGCGC TCTACCGCAC chrV:8221306-8221386 12 1.65e-04 CGAAATAACA GAGCGCGT GTTGTTTAGC chrI:3228068-3228148 24 1.65e-04 TTGTCCATTG GAGCGCGT TTGTTGTCCG chrI:4788562-4788642 70 1.65e-04 CGTATCAATA GAGCGCGT TGT chrIV:13206038-13206118 53 1.65e-04 GAGGTCAATG GAGCGCGT TTGCTCTCAC chrV:19405506-19405586 30 1.65e-04 gaatccgatg gagcgcgt ttgAGAAAAT chrIV:9104503-9104583 39 1.65e-04 GTTAGCAATG GAGCGCGT TTACGTTCTT chrV:5204333-5204413 27 1.65e-04 AATTTGAATT ACGCGCGT ATATCAGTGT chrII:8940497-8940577 56 1.65e-04 AAAAGAATCG GAGCGCGT TTGCAACAGG chrV:4339648-4339728 24 1.65e-04 aaaaacgagc aagcgcgc tccatcgcta chrIII:5587092-5587172 38 1.65e-04 CTGTCAGATG GAGCGCGT TTGGTGCATG chrIV:2902112-2902192 53 1.65e-04 TTGTCCAATG GAGCGCGT TTGCGCAACT chrIII:1207999-1208079 25 1.65e-04 GCAATAATGC AAGCGCGC TCCACTGTAC chrI:3865993-3866073 64 1.65e-04 TTGTACAACG GAGCGCGT TTGGTTAGA chrI:7940752-7940832 27 1.65e-04 CATTCAAAAC TGGCGCGT CTTTGCGCTG chrIII:12377423-12377503 28 1.65e-04 ATGTTCAATG GAGCGCGT TTGCCTAGCA chrIV:9403952-9404032 12 1.65e-04 AAGTGCGGTG GAGCGCGT TTGCACCGGA chrIV:15382699-15382779 23 1.65e-04 taattcgtac aagcgcgc tccatcgata chrII:2638216-2638296 59 1.65e-04 ATGTGCGGTG GAGCGCGT TTGCTTATTT chrV:12271614-12271694 70 1.95e-04 AGAAAGACGG CCGCGCGA AAG chrIII:5989545-5989625 13 1.95e-04 CAACGTTTTC CCGCGCGA AATATATTAG chrI:4302354-4302434 15 1.95e-04 AATTTAAAAT TAGCGCGT GAAAATGGCG chrI:7643292-7643372 20 1.95e-04 CGGAGTGTCG TAGCGCGT GTTGTTTAAC chrV:6838756-6838836 59 2.17e-04 ACGATAAACA AAGCGCGA AGGGTTATTT chrI:8082928-8083008 70 2.17e-04 TTAATGCACA CGGCGCGC AAG chrV:13437635-13437715 46 2.17e-04 AAAATGACGG AAGCGCGA ATTGTTTAGT chrIII:2331368-2331448 63 2.17e-04 AGTTATGCAA TCGCGCCC CATCGCACCC chrI:2306856-2306936 46 2.50e-04 GAAACGATTC CCGCGCGT GCGCAAACAT chrV:19119381-19119461 41 2.50e-04 ACGGTAAACA AGGCGCGT TGGCGGGATT chrIV:9777700-9777780 63 2.89e-04 GCAATTGCAA CGGCGCGA ATTTCGAAAT chrI:13628652-13628732 37 2.89e-04 AGGTGGGTCT CGGCGCGA TAGTTTGACA chrIV:9525108-9525188 20 2.89e-04 CGGAGTGTCG TTGCGCGC CTTGTTTATC chrI:9226836-9226916 24 2.89e-04 TTTTGAACGC TCGCGCCA CAATGTCATA chrI:4747525-4747605 68 2.89e-04 GTCACGCATT TCGCGCCA AGTAC chrI:10565992-10566072 10 2.89e-04 TTCTGCCTT TCGCGCCA ACACGAGAGA chrII:2204242-2204322 48 2.89e-04 CACTTCTTTT CGGCGCGA GGTTTGAATT chrV:9645653-9645733 50 2.89e-04 CCTATTGAAA CGGCGCGA AATTTTAAAC chrI:1895078-1895158 64 2.89e-04 CGGAGTGTCG TTGCGCGC CGTAAATCC chrV:965038-965118 47 3.35e-04 AACAAACCAA ACGCGCCC ATTGGACAAA chrI:8852322-8852402 50 3.35e-04 CTAACGAAAA CAGCGCGA AACTTAAAAA chrII:8276252-8276332 18 3.35e-04 TATTTAAATC ACGCGCCC TTTTTTTCGC chrI:3600860-3600940 27 3.35e-04 TGGGAGGAAA ACGCGCCC CATCGCACTT chrIV:8869798-8869878 15 3.35e-04 GATAAACAGC ACGCGCCC GCGTTAAAGC chrII:9169630-9169710 34 3.81e-04 TCGCAACGCA CGGCGCGT CTTCAAATTT chrI:6970268-6970348 61 3.81e-04 ATTTTCAAAA CGGCGCGT ATTTCGAATG chrII:11440335-11440415 55 3.81e-04 TGTCGTTTCT TTGCGCGA GTTCGAATTA chrIII:10642948-10643028 73 4.30e-04 TGTACGCAGA GAGCGCCA chrII:7807073-7807153 38 4.30e-04 CGAAATTTCT TGGCGCCA AAAGTAAAAT chrIII:7068814-7068894 47 4.30e-04 CACAGACAAT TGGCGCCA GATTCAAACG chrIV:10242870-10242950 21 4.30e-04 GATTCCACCT TGGCGCCA AAAAGTTTCA chrII:12678600-12678680 44 4.30e-04 GCTAAACAAC ACGCGCCA CCGAAATATC chrV:6043432-6043512 30 4.30e-04 GAATTTGAAC ACGCGCCA ATTTGAGGTC chrIV:1177841-1177921 63 4.30e-04 GATATCCCGC CAGCGCGT GTTGTTTATC chrIV:11125763-11125843 19 4.30e-04 GAAATTTTGA ATGCGCGC CGAAAGTTGT chrIV:5731760-5731840 22 4.86e-04 GATTACGACT TTGCGCGT TGTTTATCGT chrII:386106-386186 46 4.86e-04 AAGTCCGCAA TTGCGCGT CAGGTGTTGC chrIII:10320933-10321013 43 4.86e-04 GTGTACGCAG TTGCGCGT CACGGTGTTC chrIII:6889519-6889599 46 4.86e-04 ACTTGTTTGT TTGCGCGT CAGGTGTGGT chrIII:2401303-2401383 26 5.69e-04 GGTAAAGAAC ACGCGCCT GCGGGATTCC chrIV:6548763-6548843 33 5.69e-04 AGATAGCATC TCGCGCTC CATTGCTACG chrII:14413202-14413282 25 5.69e-04 CGAATTACAA Tcgcgctc caacggttcg chrII:9706361-9706441 49 5.69e-04 CAGACGTTAA TGGCGCCT CGTTCAAATT chrIV:2613290-2613370 13 5.69e-04 TCACCCCATT TGGCGCGG TGTGCGATGG chrIV:7165870-7165950 44 5.69e-04 GCTAAACAAC ACGCGCCT TTTGGCAACA chrI:6038162-6038242 34 5.69e-04 AATTCAAATT TCGCGCTC TTTCGAAGAC chrI:719961-720041 18 5.69e-04 CCCCGAGCAA TCGCGCTC CACCGGACTA chrV:5596547-5596627 21 5.69e-04 AACTTCGATG GAGCGCGG TTGCATGCCG chrI:4829885-4829965 64 5.69e-04 TTTCTCAAAG GAGCGCGG TGACATACA chrIII:9947165-9947245 61 6.32e-04 GTTTGCGGCC TAGCGCGG AAGGTGAAAA chrIII:13341045-13341125 40 6.32e-04 GCGCCAGTCG CCGCGCCA AGGCGCCTAG chrII:11022173-11022253 18 7.03e-04 TATTTGAATC TCGCGCTA AATTGAGAAA chrIV:874832-874912 51 7.03e-04 TTTGTCAATG GGGCGCTC TTGCATTTCC chrI:3438938-3439018 22 7.03e-04 AAGTCCGTGA ATGCGCGT GCGGTGCAAC chrIII:9848768-9848848 28 7.03e-04 AATTTGAATT TCGCGCTA AAATAAGATT chrIV:3011814-3011894 46 7.03e-04 AAAGatgcaa gggcgctc cactggacaa chrII:6974185-6974265 26 7.03e-04 TTGACGAGCA ATGCGCGT CAAATATGCT chrIII:8628535-8628615 26 7.03e-04 GAGTGTGCAA ATGCGCGT AATGGTGTAC chrIII:2805243-2805323 51 7.03e-04 TTTCTCAATG GGGCGCAC TTGCATTTCT chrI:13840030-13840110 72 7.03e-04 TTTGCGTACA AAGCGCCA C chrII:13083902-13083982 14 7.03e-04 AATTTGAAAC AAGCGCCA AAAAGTGGCG chrII:9108637-9108717 37 7.03e-04 ACAAATAAAA AAGCGCCA TGTTCAAACA chrIII:9089599-9089679 18 7.03e-04 TGACTAAACT GGGCGCAC GCGGGATATC chrII:8158145-8158225 64 8.33e-04 ACTTTGATTT TCGCGGGA CCTGCGATT chrIV:3213550-3213630 49 8.33e-04 CCCATTGCAA ACGCGCTC CGTTGGCAAT chrI:443566-443646 62 8.33e-04 atgttcgatg gagcgcac ttgaattatt chrII:6536100-6536180 39 8.33e-04 TTTCTCAGTG GAGCGCAC TTGCATTCAT chrIII:2477472-2477552 24 8.33e-04 AAAAATGCAA GTGCGCCC CACCGCACCG chrII:8566237-8566317 18 8.33e-04 AATGTGGCAA GTGCGCCC CCTCGCACTA chrIII:1533249-1533329 22 8.33e-04 GCCAATGCAA ACGCGCTC CATTGAGAAA chrII:11106487-11106567 52 8.33e-04 TTCTAGGCTC TCCCGCGC TATTATACTC chrIV:9386184-9386264 44 8.33e-04 AAGTGCAACG GAGCGCAC TTGCACGAAT chrV:8302696-8302776 21 8.33e-04 ACGCTAAACA AGGCGCGG TGTGGAATAA chrI:10185768-10185848 22 8.33e-04 ATATGCAGTG GAGCGCAC TTAATGCGCC chrI:12426864-12426944 29 8.33e-04 GGTTTTGCAA ACGCGCTC CGTTAAACAC chrII:6321170-6321250 32 8.33e-04 GAGTAAGCAA ACGCGCTC TGTCGAGACT chrI:3605759-3605839 26 8.33e-04 GATTATTGGT TCGCGGGA GGTGAGGTGT chrIII:3070167-3070247 27 8.33e-04 CGATTCCAAT TCCCGCGC ATTAGAATTA chrI:5871988-5872068 29 8.33e-04 TACGCAAACA CCGCGCCT GTTTTTGGCG chrIV:4357440-4357520 51 8.33e-04 atgtgcgatg gagcgcac ttgccaaatt chrIV:992130-992210 57 8.33e-04 TCCGGTGCAA ACGCGCTC CACCGcactt chrV:14456770-14456850 45 8.33e-04 TCGTGCGATA GAGCGCAC CCGCAATAAA chrII:14234553-14234633 34 9.58e-04 GTCAATTCAC CGGCGCCA ATTCGAATTT chrV:8248-8328 42 9.58e-04 GTCTGCGGAA TTGCGCCC CCCTTTAAAC chrIII:4986962-4987042 48 9.58e-04 CGAGAGAAAA AAGCGCGG AAGTTCAAAA chrII:10714387-10714467 62 9.58e-04 TGTGTGCACA AAGCGCGG GGATTTGAAT chrV:14991002-14991082 35 9.58e-04 CACTCCACTA TTGCGCCC GCGTGTTGTT chrIV:7478280-7478360 38 9.58e-04 CACTTGGAAA TTGCGCCC TGCTGACACT chrI:13572085-13572165 65 1.09e-03 ACGGTAAACA ACGCGCAA CGCGGGAT chrI:13367727-13367807 65 1.09e-03 ATTGGGGGTT GGGCGGGA ATTTGAAC chrV:5939671-5939751 51 1.09e-03 AAATCCCCTA CTGCGCGT TGTTTATTCT chrIII:9794125-9794205 25 1.24e-03 CGTCTCTTTA CCGCGCAC ACTGTTTCGT chrIV:4031227-4031307 57 1.24e-03 AGTCATGGGT TGGCGGGA ATTTGAATTT chrI:2830388-2830468 61 1.24e-03 GAGGGGAAAG ACGCGGGA AATTTGAATT chrV:9930766-9930846 21 1.24e-03 GTGAAACATG ACCCGCGC ACCAATGTTG chrV:8031308-8031388 53 1.24e-03 TTTCGCGACA GGGCGCAT TTGCTTCGTC chrV:6593842-6593922 49 1.24e-03 CCACCGCACA TGGCGGGA AGGTTTCAAT chrIII:6968441-6968521 58 1.24e-03 AAAAGAAAAC ACGCGGGA GACTCGATTA chrII:4828215-4828295 33 1.24e-03 AAATTTGAAC ACCCGCGC ATTTTTGTGT chrV:14645957-14646037 23 1.24e-03 TTAAAAAACT GAGCGGGA AAAGCAAATT chrI:13161930-13162010 21 1.24e-03 GTGAAAGCAA CCGCGCTC CATTGAACAA chrII:10783359-10783439 20 1.24e-03 AATCAGCTGT TCGCGCCG GTTTCGGTGC chrI:3910669-3910749 34 1.24e-03 CTCAAACACA ACGCGGGA ATTCAAAACA chrI:5189986-5190066 40 1.24e-03 TTGCGTATTT CGGCGCCT CACTCAAAAA chrIII:9393450-9393530 70 1.42e-03 GTACACCATC ACGCGCAT TTG chrIV:12079041-12079121 46 1.42e-03 TGTTTCCATA GAGCGCAT TTACACTCTT chrIII:6615209-6615289 48 1.42e-03 TTTGTCAACG GAGCGCAT TTGCATTTCC chrI:348381-348461 16 1.42e-03 GATTCAAAAG TGGCGCTT GTGTCGCTCA chrIII:6869441-6869521 37 1.42e-03 ATTAGCGGTG GAGCGCAT CTGCTCTGCC chrV:12246257-12246337 19 1.42e-03 GTTAAACAAC ACGCGCTT GCGGAACTTC chrV:12184465-12184545 28 1.42e-03 GATAAACTAC ACGCGCAT CGTTATATCG chrIII:5499116-5499196 11 1.57e-03 ATTTGAATTT ccgcgcaa acgatgctcc chrIII:12528178-12528258 60 1.57e-03 CATCACATTT TGCCGCGA ATTCTTTCTT chrII:9242975-9243055 8 1.57e-03 TAAACTT CCGCGCAA AAACCAACAA chrIII:10907849-10907929 60 1.57e-03 GAGAATCTGC AGGCGCAA GCCGAATCGG chrIII:3921818-3921898 25 1.57e-03 CCGCTATGTT TTGCGCGG AAGTTTAAAT chrII:15208301-15208381 50 1.69e-03 AATTTTGAAC ACGCGCCG GCGTTCGGTG chrI:9962095-9962175 42 1.69e-03 ACTTGCGTAC AGGCGGGA GAGCGAAAAC chrV:1893053-1893133 29 1.69e-03 AATTCGAAAC TGGCGCCG CCGAGGATGA chrI:6626878-6626958 71 1.69e-03 CCTTGCATTT TAGCGGGT AT chrI:9150328-9150408 11 1.83e-03 TCAAGTGTGG TGCCGCGT ACGTGATTGC chrIII:9912638-9912718 25 1.83e-03 AAATTCAAAC TGCCGCGT TTCTTTTTGC chrIV:11371815-11371895 24 1.83e-03 CAGGGAGTAA GTGCGCTC CTTTGCACTC chrIV:7632665-7632745 30 1.83e-03 TTCTGAATTT TGCCGCGT ATTTGTTTCC chrI:5937102-5937182 47 1.83e-03 CATTGCATTT TGCCGCGT TAATTTTTTA chrIII:8614660-8614740 22 1.83e-03 TTTAATGCAA GTGCGCTC TATCGAAATT chrV:15395073-15395153 28 1.83e-03 AGAAATGCAA GTGCGCTC TGCCGAACAA chrII:11599910-11599990 24 1.83e-03 AATAATGGTA GTGCGCTC CATTGAGAAC chrIII:5959188-5959268 63 1.98e-03 TTGTCCCGCT TACCGCGT CATTCAAATA chrV:7955334-7955414 49 2.12e-03 CCACGACACA AAGCGGGT AAATTGTCGT chrI:534291-534371 54 2.12e-03 TTGCGTACCT CGGCGGGA ATTTAAAGAG chrIII:6009045-6009125 13 2.27e-03 GCGGCAAATT AAGCGCCG TTGGTGCAAT chrV:16499176-16499256 51 2.27e-03 AACAGGCCCT GTGCGGGA AAAGAGAAAT chrII:12185015-12185095 55 2.27e-03 TAAAGAATTT CAGCGGGA AAAATTAATT chrI:10173222-10173302 73 2.43e-03 CGCCACAAAT CGCCGCGA chrIII:9776088-9776168 69 2.43e-03 GAAGGTGCTA ATGCGCTC TAGC chrV:10661601-10661681 3 2.57e-03 AT TGCCGCCC TACAGAAAAT chrI:509971-510051 48 2.57e-03 CGGAGTCCGA GGGCGCTG ATTGGTCGTG chrII:5501455-5501535 30 2.57e-03 CGACCACAAC TGGCGGCA ATTTCGAACG chrIII:11974581-11974661 41 2.57e-03 TTGAATGGGG TGGCGGCA GCTAGGCCGT chrI:9581601-9581681 52 2.57e-03 GACAGACAGA TGGCGGCA ATTCAAATAA chrIII:11580669-11580749 59 2.57e-03 AAAATATTGA TGGCGGCA GTTTAAATAC chrI:4451096-4451176 28 2.77e-03 TAGTCCAAGG GAGCGCAG TTGCATTGGC chrV:15578516-15578596 15 2.94e-03 CACTCCAATG TTGCGCCG GAGCCTTGTT chrII:6245456-6245536 18 3.08e-03 AACTTAAACA TTCCGCGT AAATTTGTGT chrIII:12534053-12534133 23 3.08e-03 aatttgaacc taccgcca aatgatttta chrI:14839825-14839905 25 3.08e-03 CGATTTGAAA TACCGCCA ACAAAATTGT chrI:5319323-5319403 24 3.27e-03 GTTCGCTCTA TCGCGGAA ACATTTGTTA chrI:4788974-4789054 67 3.48e-03 AGAACACTTT CCCCGCCA CCTGAT chrII:1437711-1437791 21 3.48e-03 CAACACGTTA CTGCGGGA TTTCGGAGTG chrIV:7946619-7946699 40 3.66e-03 CATTTAAATT TCCCGCAA ATAGAAAACA chrIII:9747320-9747400 60 3.66e-03 CCCCCCTTTT CGGCGGCA GTGGAAATGA chrIV:10697725-10697805 69 3.66e-03 AATTCGTTTT TCGCGGTT TTTC chrIII:4058061-4058141 50 3.89e-03 ACTTTTTCAT TGGCGGAA ACTTAAACTG chrIV:8112782-8112862 16 4.15e-03 AATTCAAATG TCCCGCTT TTAAAACCTT chrV:12450599-12450679 16 4.42e-03 ATATTTGAAC ACCCGCTA ATTGCCAACT chrV:20704160-20704240 47 4.85e-03 CGTCTCTTCA AACCGCAC ACTCTCTCAC chrIV:1239876-1239956 17 5.08e-03 GGTACCAGAA TACCGCAT TTGACGACAC chrI:14163339-14163419 55 5.45e-03 ACGAGAGAGT GTGCGGAA CGAGGAGACG chrV:3743349-3743429 40 5.85e-03 CGATTTAAAT CTCCGCCA AAAATCGGTG chrIII:9571037-9571117 41 6.01e-03 CAGGCGGAGT GGGCGGAG TTCGGACACG chrI:7559634-7559714 27 6.22e-03 TATTTGAATT ATCCGCTC AAATGTCTTA chrIII:5483858-5483938 62 6.22e-03 CACTTTTTTT TGGCGGAG GTTTAAATGA chrIII:4785884-4785964 51 6.72e-03 AAACAAATTT TCCCGGTC GTTTGAATGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DVGCGCGH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:2916249-2916329 4.7e-06 5_[+1]_67 chrV:10813880-10813960 4.7e-06 43_[+1]_29 chrI:14560364-14560444 4.7e-06 15_[+1]_57 chrII:2032441-2032521 4.7e-06 53_[+1]_19 chrV:15059717-15059797 1.1e-05 20_[+1]_52 chrIV:17461479-17461559 1.1e-05 24_[+1]_48 chrIV:12854892-12854972 1.1e-05 8_[+1]_64 chrIII:4878418-4878498 1.1e-05 26_[+1]_46 chrIV:5188206-5188286 1.1e-05 10_[+1]_62 chrIII:10248581-10248661 1.1e-05 22_[+1]_50 chrV:18086934-18087014 1.1e-05 17_[+1]_55 chrI:9585240-9585320 1.7e-05 33_[+1]_39 chrI:10591701-10591781 1.7e-05 52_[+1]_20 chrIII:6710168-6710248 1.7e-05 57_[+1]_15 chrIV:12334870-12334950 1.7e-05 56_[+1]_16 chrI:5138057-5138137 1.7e-05 51_[+1]_21 chrI:3908555-3908635 3e-05 48_[+1]_24 chrIII:5190345-5190425 3e-05 19_[+1]_53 chrI:15035926-15036006 3e-05 35_[+1]_37 chrV:156527-156607 3e-05 42_[+1]_30 chrII:2504558-2504638 5.5e-05 71_[+1]_1 chrIII:12739092-12739172 5.5e-05 52_[+1]_20 chrIII:8809720-8809800 5.5e-05 18_[+1]_54 chrI:3466844-3466924 5.5e-05 50_[+1]_22 chrV:11733660-11733740 5.5e-05 25_[+1]_47 chrIII:491247-491327 5.5e-05 59_[+1]_13 chrIII:11565760-11565840 5.5e-05 48_[+1]_24 chrIII:12278916-12278996 5.5e-05 72_[+1] chrIV:773085-773165 5.5e-05 48_[+1]_24 chrII:11132697-11132777 7.8e-05 27_[+1]_45 chrI:12183241-12183321 7.8e-05 18_[+1]_54 chrV:14734485-14734565 7.8e-05 41_[+1]_31 chrIII:5448353-5448433 0.0001 23_[+1]_49 chrIV:12209164-12209244 0.0001 21_[+1]_51 chrIII:2769228-2769308 0.0001 42_[+1]_30 chrIV:11142615-11142695 0.0001 48_[+1]_24 chrIII:9228344-9228424 0.0001 27_[+1]_45 chrIV:1309971-1310051 0.0001 57_[+1]_15 chrIII:5405778-5405858 0.0001 17_[+1]_55 chrI:3741265-3741345 0.0001 53_[+1]_19 chrII:2919247-2919327 0.0001 36_[+1]_36 chrIII:7074131-7074211 0.0001 50_[+1]_22 chrIV:6369673-6369753 0.0001 34_[+1]_38 chrIII:7952269-7952349 0.00013 43_[+1]_29 chrIV:4471082-4471162 0.00013 3_[+1]_69 chrIII:12152301-12152381 0.00013 51_[+1]_21 chrIII:9614363-9614443 0.00013 51_[+1]_21 chrIV:2670816-2670896 0.00013 49_[+1]_23 chrIII:9542972-9543052 0.00017 62_[+1]_10 chrIV:3694822-3694902 0.00017 10_[+1]_62 chrV:8221306-8221386 0.00017 11_[+1]_61 chrI:3228068-3228148 0.00017 23_[+1]_49 chrI:4788562-4788642 0.00017 69_[+1]_3 chrIV:13206038-13206118 0.00017 52_[+1]_20 chrV:19405506-19405586 0.00017 29_[+1]_43 chrIV:9104503-9104583 0.00017 38_[+1]_34 chrV:5204333-5204413 0.00017 26_[+1]_46 chrII:8940497-8940577 0.00017 55_[+1]_17 chrV:4339648-4339728 0.00017 23_[+1]_49 chrIII:5587092-5587172 0.00017 37_[+1]_35 chrIV:2902112-2902192 0.00017 52_[+1]_20 chrIII:1207999-1208079 0.00017 24_[+1]_48 chrI:3865993-3866073 0.00017 63_[+1]_9 chrI:7940752-7940832 0.00017 26_[+1]_46 chrIII:12377423-12377503 0.00017 27_[+1]_45 chrIV:9403952-9404032 0.00017 11_[+1]_61 chrIV:15382699-15382779 0.00017 22_[+1]_50 chrII:2638216-2638296 0.00017 58_[+1]_14 chrV:12271614-12271694 0.0002 69_[+1]_3 chrIII:5989545-5989625 0.0002 12_[+1]_60 chrI:4302354-4302434 0.0002 14_[+1]_58 chrI:7643292-7643372 0.0002 19_[+1]_53 chrV:6838756-6838836 0.00022 58_[+1]_14 chrI:8082928-8083008 0.00022 69_[+1]_3 chrV:13437635-13437715 0.00022 45_[+1]_27 chrIII:2331368-2331448 0.00022 62_[+1]_10 chrI:2306856-2306936 0.00025 45_[+1]_27 chrV:19119381-19119461 0.00025 40_[+1]_32 chrIV:9777700-9777780 0.00029 62_[+1]_10 chrI:13628652-13628732 0.00029 36_[+1]_36 chrIV:9525108-9525188 0.00029 19_[+1]_53 chrI:9226836-9226916 0.00029 23_[+1]_49 chrI:4747525-4747605 0.00029 67_[+1]_5 chrI:10565992-10566072 0.00029 9_[+1]_63 chrII:2204242-2204322 0.00029 47_[+1]_25 chrV:9645653-9645733 0.00029 49_[+1]_23 chrI:1895078-1895158 0.00029 63_[+1]_9 chrV:965038-965118 0.00033 46_[+1]_26 chrI:8852322-8852402 0.00033 49_[+1]_23 chrII:8276252-8276332 0.00033 17_[+1]_55 chrI:3600860-3600940 0.00033 26_[+1]_46 chrIV:8869798-8869878 0.00033 14_[+1]_58 chrII:9169630-9169710 0.00038 33_[+1]_39 chrI:6970268-6970348 0.00038 60_[+1]_12 chrII:11440335-11440415 0.00038 54_[+1]_18 chrIII:10642948-10643028 0.00043 72_[+1] chrII:7807073-7807153 0.00043 37_[+1]_35 chrIII:7068814-7068894 0.00043 46_[+1]_26 chrIV:10242870-10242950 0.00043 20_[+1]_52 chrII:12678600-12678680 0.00043 43_[+1]_29 chrV:6043432-6043512 0.00043 29_[+1]_43 chrIV:1177841-1177921 0.00043 62_[+1]_10 chrIV:11125763-11125843 0.00043 18_[+1]_54 chrIV:5731760-5731840 0.00049 21_[+1]_51 chrII:386106-386186 0.00049 45_[+1]_27 chrIII:10320933-10321013 0.00049 42_[+1]_30 chrIII:6889519-6889599 0.00049 45_[+1]_27 chrIII:2401303-2401383 0.00057 25_[+1]_47 chrIV:6548763-6548843 0.00057 32_[+1]_40 chrII:14413202-14413282 0.00057 24_[+1]_48 chrII:9706361-9706441 0.00057 48_[+1]_24 chrIV:2613290-2613370 0.00057 12_[+1]_60 chrIV:7165870-7165950 0.00057 43_[+1]_29 chrI:6038162-6038242 0.00057 33_[+1]_39 chrI:719961-720041 0.00057 17_[+1]_55 chrV:5596547-5596627 0.00057 20_[+1]_52 chrI:4829885-4829965 0.00057 63_[+1]_9 chrIII:9947165-9947245 0.00063 60_[+1]_12 chrIII:13341045-13341125 0.00063 39_[+1]_33 chrII:11022173-11022253 0.0007 17_[+1]_55 chrIV:874832-874912 0.0007 50_[+1]_22 chrI:3438938-3439018 0.0007 21_[+1]_51 chrIII:9848768-9848848 0.0007 27_[+1]_45 chrIV:3011814-3011894 0.0007 45_[+1]_27 chrII:6974185-6974265 0.0007 25_[+1]_47 chrIII:8628535-8628615 0.0007 25_[+1]_47 chrIII:2805243-2805323 0.0007 50_[+1]_22 chrI:13840030-13840110 0.0007 71_[+1]_1 chrII:13083902-13083982 0.0007 13_[+1]_59 chrII:9108637-9108717 0.0007 36_[+1]_36 chrIII:9089599-9089679 0.0007 17_[+1]_55 chrII:8158145-8158225 0.00083 63_[+1]_9 chrIV:3213550-3213630 0.00083 48_[+1]_24 chrI:443566-443646 0.00083 61_[+1]_11 chrII:6536100-6536180 0.00083 38_[+1]_34 chrIII:2477472-2477552 0.00083 23_[+1]_49 chrII:8566237-8566317 0.00083 17_[+1]_55 chrIII:1533249-1533329 0.00083 21_[+1]_51 chrII:11106487-11106567 0.00083 51_[+1]_21 chrIV:9386184-9386264 0.00083 43_[+1]_29 chrV:8302696-8302776 0.00083 20_[+1]_52 chrI:10185768-10185848 0.00083 21_[+1]_51 chrI:12426864-12426944 0.00083 28_[+1]_44 chrII:6321170-6321250 0.00083 31_[+1]_41 chrI:3605759-3605839 0.00083 25_[+1]_47 chrIII:3070167-3070247 0.00083 26_[+1]_46 chrI:5871988-5872068 0.00083 28_[+1]_44 chrIV:4357440-4357520 0.00083 50_[+1]_22 chrIV:992130-992210 0.00083 56_[+1]_16 chrV:14456770-14456850 0.00083 44_[+1]_28 chrII:14234553-14234633 0.00096 33_[+1]_39 chrV:8248-8328 0.00096 41_[+1]_31 chrIII:4986962-4987042 0.00096 47_[+1]_25 chrII:10714387-10714467 0.00096 61_[+1]_11 chrV:14991002-14991082 0.00096 34_[+1]_38 chrIV:7478280-7478360 0.00096 37_[+1]_35 chrI:13572085-13572165 0.0011 64_[+1]_8 chrI:13367727-13367807 0.0011 64_[+1]_8 chrV:5939671-5939751 0.0011 50_[+1]_22 chrIII:9794125-9794205 0.0012 24_[+1]_48 chrIV:4031227-4031307 0.0012 56_[+1]_16 chrI:2830388-2830468 0.0012 60_[+1]_12 chrV:9930766-9930846 0.0012 20_[+1]_52 chrV:8031308-8031388 0.0012 52_[+1]_20 chrV:6593842-6593922 0.0012 48_[+1]_24 chrIII:6968441-6968521 0.0012 57_[+1]_15 chrII:4828215-4828295 0.0012 32_[+1]_40 chrV:14645957-14646037 0.0012 22_[+1]_50 chrI:13161930-13162010 0.0012 20_[+1]_52 chrII:10783359-10783439 0.0012 19_[+1]_53 chrI:3910669-3910749 0.0012 33_[+1]_39 chrI:5189986-5190066 0.0012 39_[+1]_33 chrIII:9393450-9393530 0.0014 69_[+1]_3 chrIV:12079041-12079121 0.0014 45_[+1]_27 chrIII:6615209-6615289 0.0014 47_[+1]_25 chrI:348381-348461 0.0014 15_[+1]_57 chrIII:6869441-6869521 0.0014 36_[+1]_36 chrV:12246257-12246337 0.0014 18_[+1]_54 chrV:12184465-12184545 0.0014 27_[+1]_45 chrIII:5499116-5499196 0.0016 10_[+1]_62 chrIII:12528178-12528258 0.0016 59_[+1]_13 chrII:9242975-9243055 0.0016 7_[+1]_65 chrIII:10907849-10907929 0.0016 59_[+1]_13 chrIII:3921818-3921898 0.0016 24_[+1]_48 chrII:15208301-15208381 0.0017 49_[+1]_23 chrI:9962095-9962175 0.0017 41_[+1]_31 chrV:1893053-1893133 0.0017 28_[+1]_44 chrI:6626878-6626958 0.0017 70_[+1]_2 chrI:9150328-9150408 0.0018 10_[+1]_62 chrIII:9912638-9912718 0.0018 24_[+1]_48 chrIV:11371815-11371895 0.0018 23_[+1]_49 chrIV:7632665-7632745 0.0018 29_[+1]_43 chrI:5937102-5937182 0.0018 46_[+1]_26 chrIII:8614660-8614740 0.0018 21_[+1]_51 chrV:15395073-15395153 0.0018 27_[+1]_45 chrII:11599910-11599990 0.0018 23_[+1]_49 chrIII:5959188-5959268 0.002 62_[+1]_10 chrV:7955334-7955414 0.0021 48_[+1]_24 chrI:534291-534371 0.0021 53_[+1]_19 chrIII:6009045-6009125 0.0023 12_[+1]_60 chrV:16499176-16499256 0.0023 50_[+1]_22 chrII:12185015-12185095 0.0023 54_[+1]_18 chrI:10173222-10173302 0.0024 72_[+1] chrIII:9776088-9776168 0.0024 68_[+1]_4 chrV:10661601-10661681 0.0026 2_[+1]_70 chrI:509971-510051 0.0026 47_[+1]_25 chrII:5501455-5501535 0.0026 29_[+1]_43 chrIII:11974581-11974661 0.0026 40_[+1]_32 chrI:9581601-9581681 0.0026 51_[+1]_21 chrIII:11580669-11580749 0.0026 58_[+1]_14 chrI:4451096-4451176 0.0028 27_[+1]_45 chrV:15578516-15578596 0.0029 14_[+1]_58 chrII:6245456-6245536 0.0031 17_[+1]_55 chrIII:12534053-12534133 0.0031 22_[+1]_50 chrI:14839825-14839905 0.0031 24_[+1]_48 chrI:5319323-5319403 0.0033 23_[+1]_49 chrI:4788974-4789054 0.0035 66_[+1]_6 chrII:1437711-1437791 0.0035 20_[+1]_52 chrIV:7946619-7946699 0.0037 39_[+1]_33 chrIII:9747320-9747400 0.0037 59_[+1]_13 chrIV:10697725-10697805 0.0037 68_[+1]_4 chrIII:4058061-4058141 0.0039 49_[+1]_23 chrIV:8112782-8112862 0.0042 15_[+1]_57 chrV:12450599-12450679 0.0044 15_[+1]_57 chrV:20704160-20704240 0.0049 46_[+1]_26 chrIV:1239876-1239956 0.0051 16_[+1]_56 chrI:14163339-14163419 0.0055 54_[+1]_18 chrV:3743349-3743429 0.0058 39_[+1]_33 chrIII:9571037-9571117 0.006 40_[+1]_32 chrI:7559634-7559714 0.0062 26_[+1]_46 chrIII:5483858-5483938 0.0062 61_[+1]_11 chrIII:4785884-4785964 0.0067 50_[+1]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DVGCGCGH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DVGCGCGH width=8 seqs=232 chrIV:2916249-2916329 ( 6) GCGCGCGC 1 chrV:10813880-10813960 ( 44) GCGCGCGC 1 chrI:14560364-14560444 ( 16) GCGCGCGC 1 chrII:2032441-2032521 ( 54) GCGCGCGC 1 chrV:15059717-15059797 ( 21) TCGCGCGC 1 chrIV:17461479-17461559 ( 25) TCGCGCGC 1 chrIV:12854892-12854972 ( 9) TCGCGCGC 1 chrIII:4878418-4878498 ( 27) TCGCGCGC 1 chrIV:5188206-5188286 ( 11) TCGCGCGC 1 chrIII:10248581-10248661 ( 23) TCGCGCGC 1 chrV:18086934-18087014 ( 18) TCGCGCGC 1 chrI:9585240-9585320 ( 34) GCGCGCGA 1 chrI:10591701-10591781 ( 53) GCGCGCGA 1 chrIII:6710168-6710248 ( 58) GCGCGCGA 1 chrIV:12334870-12334950 ( 57) GCGCGCGA 1 chrI:5138057-5138137 ( 52) GCGCGCGA 1 chrI:3908555-3908635 ( 49) GGGCGCGC 1 chrIII:5190345-5190425 ( 20) TCGCGCGA 1 chrI:15035926-15036006 ( 36) GGGCGCGC 1 chrV:156527-156607 ( 43) GGGCGCGC 1 chrII:2504558-2504638 ( 72) GAGCGCGC 1 chrIII:12739092-12739172 ( 53) GAGCGCGC 1 chrIII:8809720-8809800 ( 19) GAGCGCGC 1 chrI:3466844-3466924 ( 51) GAGCGCGC 1 chrV:11733660-11733740 ( 26) GAGCGCGC 1 chrIII:491247-491327 ( 60) GAGCGCGC 1 chrIII:11565760-11565840 ( 49) GAGCGCGC 1 chrIII:12278916-12278996 ( 73) TGGCGCGC 1 chrIV:773085-773165 ( 49) GAGCGCGC 1 chrII:11132697-11132777 ( 28) GGGCGCGA 1 chrI:12183241-12183321 ( 19) TAGCGCGC 1 chrV:14734485-14734565 ( 42) TCGCGCGT 1 chrIII:5448353-5448433 ( 24) TGGCGCGA 1 chrIV:12209164-12209244 ( 22) ACGCGCGA 1 chrIII:2769228-2769308 ( 43) TGGCGCGA 1 chrIV:11142615-11142695 ( 49) ACGCGCGA 1 chrIII:9228344-9228424 ( 28) ACGCGCGA 1 chrIV:1309971-1310051 ( 58) TGGCGCGA 1 chrIII:5405778-5405858 ( 18) ACGCGCGA 1 chrI:3741265-3741345 ( 54) TGGCGCGA 1 chrII:2919247-2919327 ( 37) GAGCGCGA 1 chrIII:7074131-7074211 ( 51) ACGCGCGA 1 chrIV:6369673-6369753 ( 35) TGGCGCGA 1 chrIII:7952269-7952349 ( 44) TAGCGCGA 1 chrIV:4471082-4471162 ( 4) GGGCGCGT 1 chrIII:12152301-12152381 ( 52) GGGCGCGT 1 chrIII:9614363-9614443 ( 52) GGGCGCGT 1 chrIV:2670816-2670896 ( 50) TAGCGCGA 1 chrIII:9542972-9543052 ( 63) GAGCGCGT 1 chrIV:3694822-3694902 ( 11) AAGCGCGC 1 chrV:8221306-8221386 ( 12) GAGCGCGT 1 chrI:3228068-3228148 ( 24) GAGCGCGT 1 chrI:4788562-4788642 ( 70) GAGCGCGT 1 chrIV:13206038-13206118 ( 53) GAGCGCGT 1 chrV:19405506-19405586 ( 30) GAGCGCGT 1 chrIV:9104503-9104583 ( 39) GAGCGCGT 1 chrV:5204333-5204413 ( 27) ACGCGCGT 1 chrII:8940497-8940577 ( 56) GAGCGCGT 1 chrV:4339648-4339728 ( 24) AAGCGCGC 1 chrIII:5587092-5587172 ( 38) GAGCGCGT 1 chrIV:2902112-2902192 ( 53) GAGCGCGT 1 chrIII:1207999-1208079 ( 25) AAGCGCGC 1 chrI:3865993-3866073 ( 64) GAGCGCGT 1 chrI:7940752-7940832 ( 27) TGGCGCGT 1 chrIII:12377423-12377503 ( 28) GAGCGCGT 1 chrIV:9403952-9404032 ( 12) GAGCGCGT 1 chrIV:15382699-15382779 ( 23) AAGCGCGC 1 chrII:2638216-2638296 ( 59) GAGCGCGT 1 chrV:12271614-12271694 ( 70) CCGCGCGA 1 chrIII:5989545-5989625 ( 13) CCGCGCGA 1 chrI:4302354-4302434 ( 15) TAGCGCGT 1 chrI:7643292-7643372 ( 20) TAGCGCGT 1 chrV:6838756-6838836 ( 59) AAGCGCGA 1 chrI:8082928-8083008 ( 70) CGGCGCGC 1 chrV:13437635-13437715 ( 46) AAGCGCGA 1 chrIII:2331368-2331448 ( 63) TCGCGCCC 1 chrI:2306856-2306936 ( 46) CCGCGCGT 1 chrV:19119381-19119461 ( 41) AGGCGCGT 1 chrIV:9777700-9777780 ( 63) CGGCGCGA 1 chrI:13628652-13628732 ( 37) CGGCGCGA 1 chrIV:9525108-9525188 ( 20) TTGCGCGC 1 chrI:9226836-9226916 ( 24) TCGCGCCA 1 chrI:4747525-4747605 ( 68) TCGCGCCA 1 chrI:10565992-10566072 ( 10) TCGCGCCA 1 chrII:2204242-2204322 ( 48) CGGCGCGA 1 chrV:9645653-9645733 ( 50) CGGCGCGA 1 chrI:1895078-1895158 ( 64) TTGCGCGC 1 chrV:965038-965118 ( 47) ACGCGCCC 1 chrI:8852322-8852402 ( 50) CAGCGCGA 1 chrII:8276252-8276332 ( 18) ACGCGCCC 1 chrI:3600860-3600940 ( 27) ACGCGCCC 1 chrIV:8869798-8869878 ( 15) ACGCGCCC 1 chrII:9169630-9169710 ( 34) CGGCGCGT 1 chrI:6970268-6970348 ( 61) CGGCGCGT 1 chrII:11440335-11440415 ( 55) TTGCGCGA 1 chrIII:10642948-10643028 ( 73) GAGCGCCA 1 chrII:7807073-7807153 ( 38) TGGCGCCA 1 chrIII:7068814-7068894 ( 47) TGGCGCCA 1 chrIV:10242870-10242950 ( 21) TGGCGCCA 1 chrII:12678600-12678680 ( 44) ACGCGCCA 1 chrV:6043432-6043512 ( 30) ACGCGCCA 1 chrIV:1177841-1177921 ( 63) CAGCGCGT 1 chrIV:11125763-11125843 ( 19) ATGCGCGC 1 chrIV:5731760-5731840 ( 22) TTGCGCGT 1 chrII:386106-386186 ( 46) TTGCGCGT 1 chrIII:10320933-10321013 ( 43) TTGCGCGT 1 chrIII:6889519-6889599 ( 46) TTGCGCGT 1 chrIII:2401303-2401383 ( 26) ACGCGCCT 1 chrIV:6548763-6548843 ( 33) TCGCGCTC 1 chrII:14413202-14413282 ( 25) TCGCGCTC 1 chrII:9706361-9706441 ( 49) TGGCGCCT 1 chrIV:2613290-2613370 ( 13) TGGCGCGG 1 chrIV:7165870-7165950 ( 44) ACGCGCCT 1 chrI:6038162-6038242 ( 34) TCGCGCTC 1 chrI:719961-720041 ( 18) TCGCGCTC 1 chrV:5596547-5596627 ( 21) GAGCGCGG 1 chrI:4829885-4829965 ( 64) GAGCGCGG 1 chrIII:9947165-9947245 ( 61) TAGCGCGG 1 chrIII:13341045-13341125 ( 40) CCGCGCCA 1 chrII:11022173-11022253 ( 18) TCGCGCTA 1 chrIV:874832-874912 ( 51) GGGCGCTC 1 chrI:3438938-3439018 ( 22) ATGCGCGT 1 chrIII:9848768-9848848 ( 28) TCGCGCTA 1 chrIV:3011814-3011894 ( 46) GGGCGCTC 1 chrII:6974185-6974265 ( 26) ATGCGCGT 1 chrIII:8628535-8628615 ( 26) ATGCGCGT 1 chrIII:2805243-2805323 ( 51) GGGCGCAC 1 chrI:13840030-13840110 ( 72) AAGCGCCA 1 chrII:13083902-13083982 ( 14) AAGCGCCA 1 chrII:9108637-9108717 ( 37) AAGCGCCA 1 chrIII:9089599-9089679 ( 18) GGGCGCAC 1 chrII:8158145-8158225 ( 64) TCGCGGGA 1 chrIV:3213550-3213630 ( 49) ACGCGCTC 1 chrI:443566-443646 ( 62) GAGCGCAC 1 chrII:6536100-6536180 ( 39) GAGCGCAC 1 chrIII:2477472-2477552 ( 24) GTGCGCCC 1 chrII:8566237-8566317 ( 18) GTGCGCCC 1 chrIII:1533249-1533329 ( 22) ACGCGCTC 1 chrII:11106487-11106567 ( 52) TCCCGCGC 1 chrIV:9386184-9386264 ( 44) GAGCGCAC 1 chrV:8302696-8302776 ( 21) AGGCGCGG 1 chrI:10185768-10185848 ( 22) GAGCGCAC 1 chrI:12426864-12426944 ( 29) ACGCGCTC 1 chrII:6321170-6321250 ( 32) ACGCGCTC 1 chrI:3605759-3605839 ( 26) TCGCGGGA 1 chrIII:3070167-3070247 ( 27) TCCCGCGC 1 chrI:5871988-5872068 ( 29) CCGCGCCT 1 chrIV:4357440-4357520 ( 51) GAGCGCAC 1 chrIV:992130-992210 ( 57) ACGCGCTC 1 chrV:14456770-14456850 ( 45) GAGCGCAC 1 chrII:14234553-14234633 ( 34) CGGCGCCA 1 chrV:8248-8328 ( 42) TTGCGCCC 1 chrIII:4986962-4987042 ( 48) AAGCGCGG 1 chrII:10714387-10714467 ( 62) AAGCGCGG 1 chrV:14991002-14991082 ( 35) TTGCGCCC 1 chrIV:7478280-7478360 ( 38) TTGCGCCC 1 chrI:13572085-13572165 ( 65) ACGCGCAA 1 chrI:13367727-13367807 ( 65) GGGCGGGA 1 chrV:5939671-5939751 ( 51) CTGCGCGT 1 chrIII:9794125-9794205 ( 25) CCGCGCAC 1 chrIV:4031227-4031307 ( 57) TGGCGGGA 1 chrI:2830388-2830468 ( 61) ACGCGGGA 1 chrV:9930766-9930846 ( 21) ACCCGCGC 1 chrV:8031308-8031388 ( 53) GGGCGCAT 1 chrV:6593842-6593922 ( 49) TGGCGGGA 1 chrIII:6968441-6968521 ( 58) ACGCGGGA 1 chrII:4828215-4828295 ( 33) ACCCGCGC 1 chrV:14645957-14646037 ( 23) GAGCGGGA 1 chrI:13161930-13162010 ( 21) CCGCGCTC 1 chrII:10783359-10783439 ( 20) TCGCGCCG 1 chrI:3910669-3910749 ( 34) ACGCGGGA 1 chrI:5189986-5190066 ( 40) CGGCGCCT 1 chrIII:9393450-9393530 ( 70) ACGCGCAT 1 chrIV:12079041-12079121 ( 46) GAGCGCAT 1 chrIII:6615209-6615289 ( 48) GAGCGCAT 1 chrI:348381-348461 ( 16) TGGCGCTT 1 chrIII:6869441-6869521 ( 37) GAGCGCAT 1 chrV:12246257-12246337 ( 19) ACGCGCTT 1 chrV:12184465-12184545 ( 28) ACGCGCAT 1 chrIII:5499116-5499196 ( 11) CCGCGCAA 1 chrIII:12528178-12528258 ( 60) TGCCGCGA 1 chrII:9242975-9243055 ( 8) CCGCGCAA 1 chrIII:10907849-10907929 ( 60) AGGCGCAA 1 chrIII:3921818-3921898 ( 25) TTGCGCGG 1 chrII:15208301-15208381 ( 50) ACGCGCCG 1 chrI:9962095-9962175 ( 42) AGGCGGGA 1 chrV:1893053-1893133 ( 29) TGGCGCCG 1 chrI:6626878-6626958 ( 71) TAGCGGGT 1 chrI:9150328-9150408 ( 11) TGCCGCGT 1 chrIII:9912638-9912718 ( 25) TGCCGCGT 1 chrIV:11371815-11371895 ( 24) GTGCGCTC 1 chrIV:7632665-7632745 ( 30) TGCCGCGT 1 chrI:5937102-5937182 ( 47) TGCCGCGT 1 chrIII:8614660-8614740 ( 22) GTGCGCTC 1 chrV:15395073-15395153 ( 28) GTGCGCTC 1 chrII:11599910-11599990 ( 24) GTGCGCTC 1 chrIII:5959188-5959268 ( 63) TACCGCGT 1 chrV:7955334-7955414 ( 49) AAGCGGGT 1 chrI:534291-534371 ( 54) CGGCGGGA 1 chrIII:6009045-6009125 ( 13) AAGCGCCG 1 chrV:16499176-16499256 ( 51) GTGCGGGA 1 chrII:12185015-12185095 ( 55) CAGCGGGA 1 chrI:10173222-10173302 ( 73) CGCCGCGA 1 chrIII:9776088-9776168 ( 69) ATGCGCTC 1 chrV:10661601-10661681 ( 3) TGCCGCCC 1 chrI:509971-510051 ( 48) GGGCGCTG 1 chrII:5501455-5501535 ( 30) TGGCGGCA 1 chrIII:11974581-11974661 ( 41) TGGCGGCA 1 chrI:9581601-9581681 ( 52) TGGCGGCA 1 chrIII:11580669-11580749 ( 59) TGGCGGCA 1 chrI:4451096-4451176 ( 28) GAGCGCAG 1 chrV:15578516-15578596 ( 15) TTGCGCCG 1 chrII:6245456-6245536 ( 18) TTCCGCGT 1 chrIII:12534053-12534133 ( 23) TACCGCCA 1 chrI:14839825-14839905 ( 25) TACCGCCA 1 chrI:5319323-5319403 ( 24) TCGCGGAA 1 chrI:4788974-4789054 ( 67) CCCCGCCA 1 chrII:1437711-1437791 ( 21) CTGCGGGA 1 chrIV:7946619-7946699 ( 40) TCCCGCAA 1 chrIII:9747320-9747400 ( 60) CGGCGGCA 1 chrIV:10697725-10697805 ( 69) TCGCGGTT 1 chrIII:4058061-4058141 ( 50) TGGCGGAA 1 chrIV:8112782-8112862 ( 16) TCCCGCTT 1 chrV:12450599-12450679 ( 16) ACCCGCTA 1 chrV:20704160-20704240 ( 47) AACCGCAC 1 chrIV:1239876-1239956 ( 17) TACCGCAT 1 chrI:14163339-14163419 ( 55) GTGCGGAA 1 chrV:3743349-3743429 ( 40) CTCCGCCA 1 chrIII:9571037-9571117 ( 41) GGGCGGAG 1 chrI:7559634-7559714 ( 27) ATCCGCTC 1 chrIII:5483858-5483938 ( 62) TGGCGGAG 1 chrIII:4785884-4785964 ( 51) TCCCGGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DVGCGCGH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 6.92657 E= 2.9e-119 -29 -82 44 30 -2 66 22 -113 -1450 -104 203 -1450 -1450 223 -1450 -1450 -1450 -1450 219 -1450 -1450 205 -86 -1450 -124 -16 139 -129 28 62 -158 -16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DVGCGCGH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 232 E= 2.9e-119 0.232759 0.120690 0.297414 0.349138 0.280172 0.336207 0.254310 0.129310 0.000000 0.103448 0.896552 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.879310 0.120690 0.000000 0.120690 0.189655 0.573276 0.116379 0.344828 0.327586 0.073276 0.254310 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DVGCGCGH MEME-1 regular expression -------------------------------------------------------------------------------- [TGA][CAG]GCGCG[ACT] -------------------------------------------------------------------------------- Time 5.50 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTYRAAT MEME-2 width = 8 sites = 185 llr = 1290 E-value = 3.0e-129 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTYRAAT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 6:::5aa2 pos.-specific C :::5:::2 probability G 2:::5::: matrix T 2aa5:::5 bits 2.2 2.0 1.8 ** ** 1.6 ** ** Relative 1.3 ** ** Entropy 1.1 *** ** (10.1 bits) 0.9 ****** 0.7 ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATTTAAAT consensus CG A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTYRAAT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:13572085-13572165 36 2.47e-05 AATCGCGGAA ATTCGAAT GGTGTAGATT chrV:17538685-17538765 64 2.47e-05 AATGGGGGAA ATTCGAAT TTTACCAGC chrII:14234553-14234633 42 2.47e-05 ACCGGCGCCA ATTCGAAT TTTGAAAGGT chrI:2306856-2306936 27 2.47e-05 AGGGCTGACA ATTCGAAT GGAAACGATT chrIII:8809720-8809800 54 2.47e-05 GGTAGTTCAA ATTCGAAT GCCTGCTCGT chrI:10185768-10185848 67 2.47e-05 AACGCTCGAG ATTCGAAT TCAATT chrV:15578516-15578596 68 2.47e-05 TTAGCGGTTA ATTCGAAT ATTAA chrV:9645653-9645733 9 2.47e-05 TCGAATAT ATTCGAAT TTGCATTGCA chrIV:2902112-2902192 16 2.47e-05 AAATCTGAAA ATTCGAAT TTGAACACCC chrV:18086934-18087014 9 2.47e-05 TTCTTCCA ATTCGAAT TTCGCGCGCA chrIII:1207999-1208079 68 2.47e-05 TGGGCGCGGA ATTCGAAT TTGAA chrX:1845654-1845734 43 5.69e-05 TGGCAGCGAA ATTCAAAT TTTGATCATT chrIV:2916249-2916329 14 5.69e-05 CTGCGCGCGC ATTCAAAT TTAGTTTTTT chrI:10591701-10591781 62 5.69e-05 TGCGCGCGAA ATTCAAAT TAGATTAACG chrIV:1239876-1239956 69 5.69e-05 AAGTTATTGA ATTCAAAT ATTG chrIV:8112782-8112862 7 5.69e-05 AATTAA ATTCAAAT GTCCCGCTTT chrIII:9228344-9228424 73 5.69e-05 CTCCATCGGA ATTCAAAT chrI:6038162-6038242 25 5.69e-05 TAAACCCTCA ATTCAAAT TTCGCGCTCT chrIII:5959188-5959268 72 5.69e-05 TTACCGCGTC ATTCAAAT A chrIV:6369673-6369753 44 5.69e-05 TTGGCGCGAA ATTCAAAT TAGATAAACA chrII:6321170-6321250 63 5.69e-05 TTTAGCGGGT ATTCAAAT TCAAAACCCA chrI:3600860-3600940 60 5.69e-05 ATTGGCGGGG ATTCAAAt cagtaatttt chrI:9581601-9581681 60 5.69e-05 GATGGCGGCA ATTCAAAT AAGGAAAAAT chrV:5596547-5596627 59 5.69e-05 TTCGGCGGCA ATTCAAAT ATGAATTTTT chrIII:2331368-2331448 24 5.69e-05 TGAAAATTCA ATTCAAAT CCGTGTGATT chrII:10350627-10350707 69 5.69e-05 TTGGAGCGAA ATTCAAAT CTTG chrI:14560364-14560444 24 5.69e-05 CTGCGCGCGC ATTCAAAT TTAGTTTTTT chrII:10579024-10579104 8 5.69e-05 CACTAGA ATTCAAAT TGCCTCTCAC chrIII:12377423-12377503 60 5.69e-05 TTTCGCGGCA ATTCAAAT TAGAATTTTT chrI:5138057-5138137 8 5.69e-05 TATTCAA ATTCAAAT TTGCCGCCAT chrI:14163339-14163419 17 5.69e-05 GCTTATTCAA ATTCAAAT CTCGCACCAA chrIII:5499116-5499196 1 8.99e-05 . ATTTGAAT TTccgcgcaa chrII:11022173-11022253 9 8.99e-05 AAAACTAT ATTTGAAT CTCGCGCTAA chrI:443566-443646 28 8.99e-05 taaaattcca atttgaat tccctccaag chrIV:4031227-4031307 65 8.99e-05 GTTGGCGGGA ATTTGAAT TTTTACAA chrI:2830388-2830468 70 8.99e-05 GACGCGGGAA ATTTGAAT TCG chrIII:9848768-9848848 19 8.99e-05 CGTTTATCTA ATTTGAAT TTCGCGCTAA chrIII:5190345-5190425 11 8.99e-05 AAGTACATTT ATTTGAAT TTCGCGCGAA chrIII:12739092-12739172 20 8.99e-05 cctaattcct atttgaat ttccgccaat chrII:10714387-10714467 72 8.99e-05 AAGCGCGGGG ATTTGAAT T chrII:11106487-11106567 70 8.99e-05 TATTATACTC ATTTGAAT TTA chrI:7559634-7559714 18 8.99e-05 TGGATATTTT ATTTGAAT TATCCGCTCA chrII:9319515-9319595 33 8.99e-05 GTTGCTGTTA ATTTGAAT ATCCTCCTTA chrV:5204333-5204413 18 8.99e-05 AAAAAACTAA ATTTGAAT TACGCGCGTA chrI:1895078-1895158 20 8.99e-05 ATATTTCCCA ATTTGAAT ACCCGCCAAT chrIII:8614660-8614740 61 8.99e-05 AATGGCGGAG ATTTGAAT AAAGGTTTTC chrI:7643292-7643372 52 8.99e-05 ACCCGAGGTT ATTTGAAT TTGGATTTTA chrV:15395073-15395153 53 8.99e-05 CAAGCGGCAG ATTTGAAT GCGATTTCTG chrIV:1177841-1177921 33 8.99e-05 ACTCCCGCGC ATTTGAAT TAACGACACT chrII:2032441-2032521 46 8.99e-05 AAAAAACTAA ATTTGAAT GCGCGCGCAG chrIV:3213550-3213630 16 1.33e-04 AGTTTTTTCA ATTTAAAT TCCGCTCGCA chrII:2504558-2504638 10 1.33e-04 ATTATTTTA ATTTAAAT AATAAATTCT chrIII:2769228-2769308 10 1.33e-04 TGTATTAAA ATTTAAAT TTCGCGCCGA chrIV:7946619-7946699 31 1.33e-04 AGACAAGAGC ATTTAAAT TTCCCGCAAA chrI:4788562-4788642 7 1.33e-04 AGTCAA ATTTAAAT TTAAAACTTC chrIII:13439565-13439645 73 1.33e-04 TTTGGCGAAA ATTTAAAT chrI:12183241-12183321 67 1.33e-04 AAGAGAGGGA ATTTAAAT ATAGTT chrII:6974185-6974265 64 1.33e-04 AACCGCGGTT ATTTAAAT GTGAAATTT chrII:8276252-8276332 9 1.33e-04 AAAAAGAT ATTTAAAT CACGCGCCCT chrV:156527-156607 73 1.33e-04 GTTTCTGGCT ATTTAAAT chrI:12426864-12426944 62 1.33e-04 TTGGCGGGGT ATTTAAAT ATTGATCCTT chrV:3743349-3743429 32 1.33e-04 AAAAAAATCG ATTTAAAT CTCCGCCAAA chrIII:3921818-3921898 54 1.33e-04 ACAGTTTCCA ATTTAAAT CTGAATTCAA chrII:14413202-14413282 68 1.76e-04 aaacttgaaa attcaaac atttt chrV:15059717-15059797 4 1.76e-04 CTC ATTCAAAC AGCAAGGTTT chrIII:9912638-9912718 17 1.76e-04 AAAATATTAA ATTCAAAC TGCCGCGTTT chrIII:7068814-7068894 56 1.76e-04 TTGGCGCCAG ATTCAAAC GATAATATCT chrII:10783359-10783439 2 1.76e-04 G ATTCAAAC AATCAGCTGT chrIV:992130-992210 24 1.76e-04 AAAAAACTAA ATTCAAAC TTCCCTCCGC chrIV:6548763-6548843 2 2.25e-04 A ATTTGAAC TCCCTCTATT chrI:13367727-13367807 73 2.25e-04 TTGGGCGGGA ATTTGAAC chrIII:6615209-6615289 16 2.25e-04 TCGCTTATAA ATTTGAAC GTCCCGCGTT chrIII:9776088-9776168 42 2.25e-04 CGTGGCGGCA ATTTGAAC TTTTATCGAG chrI:13840030-13840110 7 2.25e-04 TTTCTA ATTCGAAA TTCGCGGTGG chrII:4828215-4828295 25 2.25e-04 AAAAAATAAA ATTTGAAC ACCCGCGCAT chrIII:6889519-6889599 23 2.25e-04 AAAGAATAAA ATTCGAAA ATCGCACTTG chrIII:12152301-12152381 9 2.25e-04 ATTCTTCA ATTTGAAC TTCCCGCTAT chrIII:5587092-5587172 5 2.25e-04 TGGA ATTTGAAC ATCCACGCTT chrIII:12534053-12534133 14 2.25e-04 gtcgaattca atttgaac ctaccgccaa chrV:13437635-13437715 5 2.25e-04 ACAC ATTCGAAA GTCGCGCCTT chrV:1893053-1893133 20 2.25e-04 ACTGGTTTCA ATTCGAAA CTGGCGCCGC chrIV:4357440-4357520 17 2.25e-04 CGaaattctt atttgaac ttccgcgcaa chrV:6043432-6043512 22 2.25e-04 AAAAACTCGA ATTTGAAC ACGCGCCAAT chrV:12450599-12450679 8 2.25e-04 AATTCAT ATTTGAAC ACCCGCTAAT chrV:15569862-15569942 20 3.09e-04 TAGCTTTAAA ATTCAAAA TTCCCTCCAA chrIII:7952269-7952349 52 3.09e-04 ACTAGCGCGA ATTCAAAA AAAGACGCTC chrI:2010514-2010594 32 3.09e-04 AGGAAAACAA ATTCAAAA AAATGCGAAA chrII:11440335-11440415 63 3.09e-04 CTTTGCGCGA GTTCGAAT TATTTTTTTT chrIV:11142615-11142695 58 3.09e-04 CACGCGCGAA ATTTAAAC AATAGTTTTT chrI:348381-348461 7 3.09e-04 AAATAG ATTCAAAA GTGGCGCTTG chrI:5937102-5937182 64 3.09e-04 TTAATTTTTT ATTTAAAC GGCTTGCAT chrI:4747525-4747605 12 3.09e-04 TAAATTTTCT ATTCAAAA ACATGTTCGC chrI:10633210-10633290 68 3.09e-04 AGAGAGCGAG ATTCAAAA GACAA chrIII:10093251-10093331 66 3.09e-04 TTGCGAGGCA ATTCAAAA ATGATTT chrI:7940752-7940832 18 3.09e-04 ACAGAAATGC ATTCAAAA CTGGCGCGTC chrI:3910669-3910749 42 3.09e-04 CAACGCGGGA ATTCAAAA CAGGGGTTTT chrI:4451096-4451176 59 3.66e-04 AAAAATAATA ATTTGAAA AGAGCAACTT chrIV:2890663-2890743 6 3.66e-04 ATTTC ATTTGAAA TTCCCTCCAA chrI:9585240-9585320 50 3.66e-04 GAAAATAGTA ATTTGAAA TTGAATACGA chrIV:9525108-9525188 61 3.66e-04 TCGGCGCGTA GTTCAAAT TTAGGTAGTG chrI:8018589-8018669 49 3.66e-04 GAACCCTAAT ATTTGAAA CTCCTCCAAT chrII:8566237-8566317 51 3.66e-04 ATAGGAGGGT GTTCAAAT GAGGAAAAGT chrII:11132697-11132777 60 3.66e-04 AACCGGGGAA GTTCAAAT CTATTTATTT chrIV:7632665-7632745 12 3.66e-04 GAATAATAGT GTTCAAAT TTCTGAATTT chrIV:9104503-9104583 19 3.66e-04 AAAAACTAAT GTTCAAAT GAGTTAGCAA chrV:8302696-8302776 70 3.66e-04 TTAAGCGGGT GTTCAAAT AGG chrII:9706361-9706441 58 3.66e-04 ATGGCGCCTC GTTCAAAT TTTATATTTT chrIII:2805243-2805323 18 3.66e-04 TGAAAACTAA ATTTGAAA CACCCGCGCA chrIII:491247-491327 3 3.66e-04 AA ATTTGAAA TCCCTCCAAA chrV:4339648-4339728 59 3.66e-04 ttggcgggag gttcaaat cggaattcga chrII:13083902-13083982 5 3.66e-04 CTAA ATTTGAAA CAAGCGCCAA chrI:5871988-5872068 51 3.66e-04 TTGGCGCAAA ATTTGAAA CACATTTTTT chrII:12678600-12678680 6 3.66e-04 CCCCT ATTTGAAA AACCACCCTT chrI:3865993-3866073 32 3.66e-04 TGGGAGCTAA ATTTGAAA GTGGCGGTTT chrI:14839825-14839905 17 3.66e-04 AAAAATTCCG ATTTGAAA TACCGCCAAC chrV:14456770-14456850 10 3.66e-04 GGAAAATCA ATTTGAAA TACAATGATT chrIII:9089599-9089679 64 3.66e-04 AAACGCGGGC GTTCAAAT TAGAGTTTT chrIV:15382699-15382779 58 3.66e-04 ttggcgggag gttcaaat tggaattcat chrII:2638216-2638296 11 3.66e-04 ACTGATATTT ATTTGAAA TTTAAAGCTT chrI:13628652-13628732 65 4.59e-04 GACCCGCGAA GTTTGAAT TAGGAAAT chrIV:3694822-3694902 54 4.59e-04 AAGCGTGTCT TTTCGAAT AAAACGGCAG chrI:6970268-6970348 70 4.59e-04 ACGGCGCGTA TTTCGAAT GTA chrIII:4785884-4785964 59 4.59e-04 TTTCCCGGTC GTTTGAAT GTAGTCGGAC chrIII:5405778-5405858 71 4.59e-04 TTTTGCGGTA GTTTGAAT TT chrII:2204242-2204322 57 4.59e-04 TCGGCGCGAG GTTTGAAT TGGGAAACCT chrI:4302354-4302434 6 4.59e-04 TCAAA ATTTAAAA TTAGCGCGTG chrIII:11974581-11974661 29 4.59e-04 GAAATGTCTC GTTTGAAT GGGGTGGCGG chrV:14645957-14646037 11 4.59e-04 AAGTTTTAAA ATTTAAAA AACTGAGCGG chrIII:7074131-7074211 60 4.59e-04 TACGCGCGAA GTTTGAAT AGGACTTTCT chrIII:2401303-2401383 73 5.25e-04 TTACGCGGTA GTTTAAAT chrIV:12209164-12209244 71 5.25e-04 TGTGGCGGTT TTTCAAAT TT chrIV:4471082-4471162 37 5.25e-04 GTGGCGCCAA TTTCAAAT TTAATTAATT chrV:5939671-5939751 9 5.25e-04 CTTTTCTA TTTCAAAT TCCCTCTAAA chrIII:9614363-9614443 20 5.25e-04 CGGTAAACTG GTTTAAAT TCCAATTTCG chrIII:11580669-11580749 67 5.25e-04 GATGGCGGCA GTTTAAAT ACTGAC chrIV:2275740-2275820 35 5.25e-04 AATGGAGGGA GTTTAAAT TTGGGTTTTC chrIII:5483858-5483938 70 5.25e-04 TTTGGCGGAG GTTTAAAT GAG chrV:12184465-12184545 66 5.25e-04 AGTGGCGGAT TTTCAAAT AAATTTT chrIV:9403952-9404032 45 5.25e-04 GCGGAGGGAA GTTTAAAT TTAGTTTTTT chrV:6593842-6593922 66 5.57e-04 AAGGTTTCAA TTTTGAAT CACCACG chrI:8082928-8083008 9 5.57e-04 AAACTGAT TTTTGAAT CACCGCCAAC chrV:12246257-12246337 67 5.57e-04 TGCGCTCTAT TTTTGAAT CGGAAA chrI:719961-720041 52 5.57e-04 ACACCGCGAA TTTTGAAT TACATCCCTC chrIV:13206038-13206118 11 6.14e-04 ACACACGAAT GTTCGAAC GTTTGTTTTT chrIV:5731760-5731840 67 6.33e-04 AAAGGAGGGA GTTCAAAC TTGGAT chrIV:17461479-17461559 35 6.33e-04 TCGCGCGCTC GTTCAAAC GCGTACGCAA chrII:9108637-9108717 46 6.33e-04 AAAGCGCCAT GTTCAAAC ACGAGTTTCG chrIII:5448353-5448433 71 6.90e-04 AAATCTGAAT TTTCGAAC AT chrIII:2477472-2477552 67 6.90e-04 GAAAATCGAA TTTCGAAC TGATTT chrII:5501455-5501535 39 6.90e-04 CTGGCGGCAA TTTCGAAC GTGCATGCCA chrII:6536100-6536180 6 7.63e-04 TTACA TTTCAAAC CACGCGCTCA chrV:10813880-10813960 53 7.63e-04 TGCGCGCGCC GTTCAAAA TGTATCGTTT chrIII:4986962-4987042 58 7.63e-04 AAGCGCGGAA GTTCAAAA CAAAAAAAAA chrV:10031547-10031627 67 7.63e-04 AAGAGAGGGA GTTCAAAA ATTAGT chrI:3466844-3466924 18 7.63e-04 TGGAAACTAA TTTCAAAC GACGCGCGCA chrIV:10242870-10242950 34 7.63e-04 CGCCAAAAAG TTTCAAAC GCGGGGCCTA chrV:11733660-11733740 60 7.63e-04 AAAGTTAATT TTTCAAAC ATCATTCAGA chrIII:11565760-11565840 17 7.63e-04 AAAACCCCCA TTTCAAAC TCCCGCGCTC chrIV:9777700-9777780 72 8.38e-04 ACGGCGCGAA TTTCGAAA T chrI:9226836-9226916 14 8.38e-04 AAAATTTATG TTTTGAAC GCTCGCGCCA chrIII:1533249-1533329 56 8.38e-04 GTTGGCGGGT GTTTGAAA TGGAAATTCT chrII:15208301-15208381 42 8.38e-04 AAAAATCAAA TTTTGAAC ACGCGCCGGC chrIV:7165870-7165950 62 8.38e-04 TTTGGCAACA TTTCGAAA TATAATGTAA chrV:14734485-14734565 25 8.38e-04 TAAAATTTTT GTTTGAAA TATGAGGTTT chrIV:12334870-12334950 45 8.38e-04 GCGGAGTCTT GTTTGAAA AATTGCGCGC chrI:4829885-4829965 32 8.38e-04 TGGCGTTCTT TTTTGAAC ATAGCGCCGT chrIV:874832-874912 18 9.35e-04 AAAAAACTAA TTTTAAAC TCCCGCCGTC chrIV:12079041-12079121 14 9.35e-04 TAGAAATTAA TTTTAAAC TAGTTCTCAT chrV:6838756-6838836 12 9.35e-04 AAAAATTATT TTTTAAAC TGTCCCCAAA chrI:13161930-13162010 54 9.35e-04 TTGCGCGGTT TTTCAAAA TTGAATACCT chrII:1437711-1437791 62 9.35e-04 TTCGGCGGAG TTTCAAAA GCAGAAATTG chrII:11599910-11599990 55 9.35e-04 ATGCGCGGAC TTTCAAAA AAGAGGGGTT chrI:3741265-3741345 63 9.68e-04 TTGGCGCGAG TTTTGAAA ACAGCTCCTG chrIII:6710168-6710248 67 1.01e-03 TGCGCGCGAA TTTTAAAA ATAGAT chrIV:11371815-11371895 66 1.01e-03 AAGTGAAAGT TTTTAAAA GAGTAGT chrIV:1309971-1310051 48 1.01e-03 TGTTTAGCGC TTTTAAAA ATTGGCGCGA chrI:5319323-5319403 49 1.01e-03 TTAGAGGGTG TTTTAAAA GCAGTTCTGT chrIV:8869798-8869878 71 1.01e-03 AATATTTAAT TTTTAAAA AA chrII:9169630-9169710 42 1.05e-03 CACGGCGCGT CTTCAAAT TTGGGTTTTT chrIV:9386184-9386264 70 1.11e-03 ATCACGTCTT CTTTAAAT TCA chrIII:6009045-6009125 63 1.18e-03 ACGAGCAAAA CTTTGAAC AAGGTTTATT chrIII:10907849-10907929 16 1.18e-03 AACACGTGCT CTTCGAAA TTGCAAAACC chrV:8248-8328 52 1.23e-03 TTGCGCCCCC CTTTAAAC AAAACAGCGG chrIII:3070167-3070247 19 1.33e-03 GAATATTCCG ATTCCAAT TCCCGCGCAT chrV:8221306-8221386 62 1.35e-03 AGCAAAATTC ATTCAAAG TGACTGCCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTYRAAT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:13572085-13572165 2.5e-05 35_[+2]_37 chrV:17538685-17538765 2.5e-05 63_[+2]_9 chrII:14234553-14234633 2.5e-05 41_[+2]_31 chrI:2306856-2306936 2.5e-05 26_[+2]_46 chrIII:8809720-8809800 2.5e-05 53_[+2]_19 chrI:10185768-10185848 2.5e-05 66_[+2]_6 chrV:15578516-15578596 2.5e-05 67_[+2]_5 chrV:9645653-9645733 2.5e-05 8_[+2]_64 chrIV:2902112-2902192 2.5e-05 15_[+2]_57 chrV:18086934-18087014 2.5e-05 8_[+2]_64 chrIII:1207999-1208079 2.5e-05 67_[+2]_5 chrX:1845654-1845734 5.7e-05 42_[+2]_30 chrIV:2916249-2916329 5.7e-05 13_[+2]_59 chrI:10591701-10591781 5.7e-05 61_[+2]_11 chrIV:1239876-1239956 5.7e-05 68_[+2]_4 chrIV:8112782-8112862 5.7e-05 6_[+2]_66 chrIII:9228344-9228424 5.7e-05 72_[+2] chrI:6038162-6038242 5.7e-05 24_[+2]_48 chrIII:5959188-5959268 5.7e-05 71_[+2]_1 chrIV:6369673-6369753 5.7e-05 43_[+2]_29 chrII:6321170-6321250 5.7e-05 62_[+2]_10 chrI:3600860-3600940 5.7e-05 59_[+2]_13 chrI:9581601-9581681 5.7e-05 59_[+2]_13 chrV:5596547-5596627 5.7e-05 58_[+2]_14 chrIII:2331368-2331448 5.7e-05 23_[+2]_49 chrII:10350627-10350707 5.7e-05 68_[+2]_4 chrI:14560364-14560444 5.7e-05 23_[+2]_49 chrII:10579024-10579104 5.7e-05 7_[+2]_65 chrIII:12377423-12377503 5.7e-05 59_[+2]_13 chrI:5138057-5138137 5.7e-05 7_[+2]_65 chrI:14163339-14163419 5.7e-05 16_[+2]_56 chrIII:5499116-5499196 9e-05 [+2]_72 chrII:11022173-11022253 9e-05 8_[+2]_64 chrI:443566-443646 9e-05 27_[+2]_45 chrIV:4031227-4031307 9e-05 64_[+2]_8 chrI:2830388-2830468 9e-05 69_[+2]_3 chrIII:9848768-9848848 9e-05 18_[+2]_54 chrIII:5190345-5190425 9e-05 10_[+2]_62 chrIII:12739092-12739172 9e-05 19_[+2]_53 chrII:10714387-10714467 9e-05 71_[+2]_1 chrII:11106487-11106567 9e-05 69_[+2]_3 chrI:7559634-7559714 9e-05 17_[+2]_55 chrII:9319515-9319595 9e-05 32_[+2]_40 chrV:5204333-5204413 9e-05 17_[+2]_55 chrI:1895078-1895158 9e-05 19_[+2]_53 chrIII:8614660-8614740 9e-05 60_[+2]_12 chrI:7643292-7643372 9e-05 51_[+2]_21 chrV:15395073-15395153 9e-05 52_[+2]_20 chrIV:1177841-1177921 9e-05 32_[+2]_40 chrII:2032441-2032521 9e-05 45_[+2]_27 chrIV:3213550-3213630 0.00013 15_[+2]_57 chrII:2504558-2504638 0.00013 9_[+2]_63 chrIII:2769228-2769308 0.00013 9_[+2]_63 chrIV:7946619-7946699 0.00013 30_[+2]_42 chrI:4788562-4788642 0.00013 6_[+2]_66 chrIII:13439565-13439645 0.00013 72_[+2] chrI:12183241-12183321 0.00013 66_[+2]_6 chrII:6974185-6974265 0.00013 63_[+2]_9 chrII:8276252-8276332 0.00013 8_[+2]_64 chrV:156527-156607 0.00013 72_[+2] chrI:12426864-12426944 0.00013 61_[+2]_11 chrV:3743349-3743429 0.00013 31_[+2]_41 chrIII:3921818-3921898 0.00013 53_[+2]_19 chrII:14413202-14413282 0.00018 67_[+2]_5 chrV:15059717-15059797 0.00018 3_[+2]_69 chrIII:9912638-9912718 0.00018 16_[+2]_56 chrIII:7068814-7068894 0.00018 55_[+2]_17 chrII:10783359-10783439 0.00018 1_[+2]_71 chrIV:992130-992210 0.00018 23_[+2]_49 chrIV:6548763-6548843 0.00023 1_[+2]_71 chrI:13367727-13367807 0.00023 72_[+2] chrIII:6615209-6615289 0.00023 15_[+2]_57 chrIII:9776088-9776168 0.00023 41_[+2]_31 chrI:13840030-13840110 0.00023 6_[+2]_66 chrII:4828215-4828295 0.00023 24_[+2]_48 chrIII:6889519-6889599 0.00023 22_[+2]_50 chrIII:12152301-12152381 0.00023 8_[+2]_64 chrIII:5587092-5587172 0.00023 4_[+2]_68 chrIII:12534053-12534133 0.00023 13_[+2]_59 chrV:13437635-13437715 0.00023 4_[+2]_68 chrV:1893053-1893133 0.00023 19_[+2]_53 chrIV:4357440-4357520 0.00023 16_[+2]_56 chrV:6043432-6043512 0.00023 21_[+2]_51 chrV:12450599-12450679 0.00023 7_[+2]_65 chrV:15569862-15569942 0.00031 19_[+2]_53 chrIII:7952269-7952349 0.00031 51_[+2]_21 chrI:2010514-2010594 0.00031 31_[+2]_41 chrII:11440335-11440415 0.00031 62_[+2]_10 chrIV:11142615-11142695 0.00031 57_[+2]_15 chrI:348381-348461 0.00031 6_[+2]_66 chrI:5937102-5937182 0.00031 63_[+2]_9 chrI:4747525-4747605 0.00031 11_[+2]_61 chrI:10633210-10633290 0.00031 67_[+2]_5 chrIII:10093251-10093331 0.00031 65_[+2]_7 chrI:7940752-7940832 0.00031 17_[+2]_55 chrI:3910669-3910749 0.00031 41_[+2]_31 chrI:4451096-4451176 0.00037 58_[+2]_14 chrIV:2890663-2890743 0.00037 5_[+2]_67 chrI:9585240-9585320 0.00037 49_[+2]_23 chrIV:9525108-9525188 0.00037 60_[+2]_12 chrI:8018589-8018669 0.00037 48_[+2]_24 chrII:8566237-8566317 0.00037 50_[+2]_22 chrII:11132697-11132777 0.00037 59_[+2]_13 chrIV:7632665-7632745 0.00037 11_[+2]_61 chrIV:9104503-9104583 0.00037 18_[+2]_54 chrV:8302696-8302776 0.00037 69_[+2]_3 chrII:9706361-9706441 0.00037 57_[+2]_15 chrIII:2805243-2805323 0.00037 17_[+2]_55 chrIII:491247-491327 0.00037 2_[+2]_70 chrV:4339648-4339728 0.00037 58_[+2]_14 chrII:13083902-13083982 0.00037 4_[+2]_68 chrI:5871988-5872068 0.00037 50_[+2]_22 chrII:12678600-12678680 0.00037 5_[+2]_67 chrI:3865993-3866073 0.00037 31_[+2]_41 chrI:14839825-14839905 0.00037 16_[+2]_56 chrV:14456770-14456850 0.00037 9_[+2]_63 chrIII:9089599-9089679 0.00037 63_[+2]_9 chrIV:15382699-15382779 0.00037 57_[+2]_15 chrII:2638216-2638296 0.00037 10_[+2]_62 chrI:13628652-13628732 0.00046 64_[+2]_8 chrIV:3694822-3694902 0.00046 53_[+2]_19 chrI:6970268-6970348 0.00046 69_[+2]_3 chrIII:4785884-4785964 0.00046 58_[+2]_14 chrIII:5405778-5405858 0.00046 70_[+2]_2 chrII:2204242-2204322 0.00046 56_[+2]_16 chrI:4302354-4302434 0.00046 5_[+2]_67 chrIII:11974581-11974661 0.00046 28_[+2]_44 chrV:14645957-14646037 0.00046 10_[+2]_62 chrIII:7074131-7074211 0.00046 59_[+2]_13 chrIII:2401303-2401383 0.00052 72_[+2] chrIV:12209164-12209244 0.00052 70_[+2]_2 chrIV:4471082-4471162 0.00052 36_[+2]_36 chrV:5939671-5939751 0.00052 8_[+2]_64 chrIII:9614363-9614443 0.00052 19_[+2]_53 chrIII:11580669-11580749 0.00052 66_[+2]_6 chrIV:2275740-2275820 0.00052 34_[+2]_38 chrIII:5483858-5483938 0.00052 69_[+2]_3 chrV:12184465-12184545 0.00052 65_[+2]_7 chrIV:9403952-9404032 0.00052 44_[+2]_28 chrV:6593842-6593922 0.00056 65_[+2]_7 chrI:8082928-8083008 0.00056 8_[+2]_64 chrV:12246257-12246337 0.00056 66_[+2]_6 chrI:719961-720041 0.00056 51_[+2]_21 chrIV:13206038-13206118 0.00061 10_[+2]_62 chrIV:5731760-5731840 0.00063 66_[+2]_6 chrIV:17461479-17461559 0.00063 34_[+2]_38 chrII:9108637-9108717 0.00063 45_[+2]_27 chrIII:5448353-5448433 0.00069 70_[+2]_2 chrIII:2477472-2477552 0.00069 66_[+2]_6 chrII:5501455-5501535 0.00069 38_[+2]_34 chrII:6536100-6536180 0.00076 5_[+2]_67 chrV:10813880-10813960 0.00076 52_[+2]_20 chrIII:4986962-4987042 0.00076 57_[+2]_15 chrV:10031547-10031627 0.00076 66_[+2]_6 chrI:3466844-3466924 0.00076 17_[+2]_55 chrIV:10242870-10242950 0.00076 33_[+2]_39 chrV:11733660-11733740 0.00076 59_[+2]_13 chrIII:11565760-11565840 0.00076 16_[+2]_56 chrIV:9777700-9777780 0.00084 71_[+2]_1 chrI:9226836-9226916 0.00084 13_[+2]_59 chrIII:1533249-1533329 0.00084 55_[+2]_17 chrII:15208301-15208381 0.00084 41_[+2]_31 chrIV:7165870-7165950 0.00084 61_[+2]_11 chrV:14734485-14734565 0.00084 24_[+2]_48 chrIV:12334870-12334950 0.00084 44_[+2]_28 chrI:4829885-4829965 0.00084 31_[+2]_41 chrIV:874832-874912 0.00094 17_[+2]_55 chrIV:12079041-12079121 0.00094 13_[+2]_59 chrV:6838756-6838836 0.00094 11_[+2]_61 chrI:13161930-13162010 0.00094 53_[+2]_19 chrII:1437711-1437791 0.00094 61_[+2]_11 chrII:11599910-11599990 0.00094 54_[+2]_18 chrI:3741265-3741345 0.00097 62_[+2]_10 chrIII:6710168-6710248 0.001 66_[+2]_6 chrIV:11371815-11371895 0.001 65_[+2]_7 chrIV:1309971-1310051 0.001 47_[+2]_25 chrI:5319323-5319403 0.001 48_[+2]_24 chrIV:8869798-8869878 0.001 70_[+2]_2 chrII:9169630-9169710 0.0011 41_[+2]_31 chrIV:9386184-9386264 0.0011 69_[+2]_3 chrIII:6009045-6009125 0.0012 62_[+2]_10 chrIII:10907849-10907929 0.0012 15_[+2]_57 chrV:8248-8328 0.0012 51_[+2]_21 chrIII:3070167-3070247 0.0013 18_[+2]_54 chrV:8221306-8221386 0.0014 61_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTYRAAT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTYRAAT width=8 seqs=185 chrI:13572085-13572165 ( 36) ATTCGAAT 1 chrV:17538685-17538765 ( 64) ATTCGAAT 1 chrII:14234553-14234633 ( 42) ATTCGAAT 1 chrI:2306856-2306936 ( 27) ATTCGAAT 1 chrIII:8809720-8809800 ( 54) ATTCGAAT 1 chrI:10185768-10185848 ( 67) ATTCGAAT 1 chrV:15578516-15578596 ( 68) ATTCGAAT 1 chrV:9645653-9645733 ( 9) ATTCGAAT 1 chrIV:2902112-2902192 ( 16) ATTCGAAT 1 chrV:18086934-18087014 ( 9) ATTCGAAT 1 chrIII:1207999-1208079 ( 68) ATTCGAAT 1 chrX:1845654-1845734 ( 43) ATTCAAAT 1 chrIV:2916249-2916329 ( 14) ATTCAAAT 1 chrI:10591701-10591781 ( 62) ATTCAAAT 1 chrIV:1239876-1239956 ( 69) ATTCAAAT 1 chrIV:8112782-8112862 ( 7) ATTCAAAT 1 chrIII:9228344-9228424 ( 73) ATTCAAAT 1 chrI:6038162-6038242 ( 25) ATTCAAAT 1 chrIII:5959188-5959268 ( 72) ATTCAAAT 1 chrIV:6369673-6369753 ( 44) ATTCAAAT 1 chrII:6321170-6321250 ( 63) ATTCAAAT 1 chrI:3600860-3600940 ( 60) ATTCAAAT 1 chrI:9581601-9581681 ( 60) ATTCAAAT 1 chrV:5596547-5596627 ( 59) ATTCAAAT 1 chrIII:2331368-2331448 ( 24) ATTCAAAT 1 chrII:10350627-10350707 ( 69) ATTCAAAT 1 chrI:14560364-14560444 ( 24) ATTCAAAT 1 chrII:10579024-10579104 ( 8) ATTCAAAT 1 chrIII:12377423-12377503 ( 60) ATTCAAAT 1 chrI:5138057-5138137 ( 8) ATTCAAAT 1 chrI:14163339-14163419 ( 17) ATTCAAAT 1 chrIII:5499116-5499196 ( 1) ATTTGAAT 1 chrII:11022173-11022253 ( 9) ATTTGAAT 1 chrI:443566-443646 ( 28) ATTTGAAT 1 chrIV:4031227-4031307 ( 65) ATTTGAAT 1 chrI:2830388-2830468 ( 70) ATTTGAAT 1 chrIII:9848768-9848848 ( 19) ATTTGAAT 1 chrIII:5190345-5190425 ( 11) ATTTGAAT 1 chrIII:12739092-12739172 ( 20) ATTTGAAT 1 chrII:10714387-10714467 ( 72) ATTTGAAT 1 chrII:11106487-11106567 ( 70) ATTTGAAT 1 chrI:7559634-7559714 ( 18) ATTTGAAT 1 chrII:9319515-9319595 ( 33) ATTTGAAT 1 chrV:5204333-5204413 ( 18) ATTTGAAT 1 chrI:1895078-1895158 ( 20) ATTTGAAT 1 chrIII:8614660-8614740 ( 61) ATTTGAAT 1 chrI:7643292-7643372 ( 52) ATTTGAAT 1 chrV:15395073-15395153 ( 53) ATTTGAAT 1 chrIV:1177841-1177921 ( 33) ATTTGAAT 1 chrII:2032441-2032521 ( 46) ATTTGAAT 1 chrIV:3213550-3213630 ( 16) ATTTAAAT 1 chrII:2504558-2504638 ( 10) ATTTAAAT 1 chrIII:2769228-2769308 ( 10) ATTTAAAT 1 chrIV:7946619-7946699 ( 31) ATTTAAAT 1 chrI:4788562-4788642 ( 7) ATTTAAAT 1 chrIII:13439565-13439645 ( 73) ATTTAAAT 1 chrI:12183241-12183321 ( 67) ATTTAAAT 1 chrII:6974185-6974265 ( 64) ATTTAAAT 1 chrII:8276252-8276332 ( 9) ATTTAAAT 1 chrV:156527-156607 ( 73) ATTTAAAT 1 chrI:12426864-12426944 ( 62) ATTTAAAT 1 chrV:3743349-3743429 ( 32) ATTTAAAT 1 chrIII:3921818-3921898 ( 54) ATTTAAAT 1 chrII:14413202-14413282 ( 68) ATTCAAAC 1 chrV:15059717-15059797 ( 4) ATTCAAAC 1 chrIII:9912638-9912718 ( 17) ATTCAAAC 1 chrIII:7068814-7068894 ( 56) ATTCAAAC 1 chrII:10783359-10783439 ( 2) ATTCAAAC 1 chrIV:992130-992210 ( 24) ATTCAAAC 1 chrIV:6548763-6548843 ( 2) ATTTGAAC 1 chrI:13367727-13367807 ( 73) ATTTGAAC 1 chrIII:6615209-6615289 ( 16) ATTTGAAC 1 chrIII:9776088-9776168 ( 42) ATTTGAAC 1 chrI:13840030-13840110 ( 7) ATTCGAAA 1 chrII:4828215-4828295 ( 25) ATTTGAAC 1 chrIII:6889519-6889599 ( 23) ATTCGAAA 1 chrIII:12152301-12152381 ( 9) ATTTGAAC 1 chrIII:5587092-5587172 ( 5) ATTTGAAC 1 chrIII:12534053-12534133 ( 14) ATTTGAAC 1 chrV:13437635-13437715 ( 5) ATTCGAAA 1 chrV:1893053-1893133 ( 20) ATTCGAAA 1 chrIV:4357440-4357520 ( 17) ATTTGAAC 1 chrV:6043432-6043512 ( 22) ATTTGAAC 1 chrV:12450599-12450679 ( 8) ATTTGAAC 1 chrV:15569862-15569942 ( 20) ATTCAAAA 1 chrIII:7952269-7952349 ( 52) ATTCAAAA 1 chrI:2010514-2010594 ( 32) ATTCAAAA 1 chrII:11440335-11440415 ( 63) GTTCGAAT 1 chrIV:11142615-11142695 ( 58) ATTTAAAC 1 chrI:348381-348461 ( 7) ATTCAAAA 1 chrI:5937102-5937182 ( 64) ATTTAAAC 1 chrI:4747525-4747605 ( 12) ATTCAAAA 1 chrI:10633210-10633290 ( 68) ATTCAAAA 1 chrIII:10093251-10093331 ( 66) ATTCAAAA 1 chrI:7940752-7940832 ( 18) ATTCAAAA 1 chrI:3910669-3910749 ( 42) ATTCAAAA 1 chrI:4451096-4451176 ( 59) ATTTGAAA 1 chrIV:2890663-2890743 ( 6) ATTTGAAA 1 chrI:9585240-9585320 ( 50) ATTTGAAA 1 chrIV:9525108-9525188 ( 61) GTTCAAAT 1 chrI:8018589-8018669 ( 49) ATTTGAAA 1 chrII:8566237-8566317 ( 51) GTTCAAAT 1 chrII:11132697-11132777 ( 60) GTTCAAAT 1 chrIV:7632665-7632745 ( 12) GTTCAAAT 1 chrIV:9104503-9104583 ( 19) GTTCAAAT 1 chrV:8302696-8302776 ( 70) GTTCAAAT 1 chrII:9706361-9706441 ( 58) GTTCAAAT 1 chrIII:2805243-2805323 ( 18) ATTTGAAA 1 chrIII:491247-491327 ( 3) ATTTGAAA 1 chrV:4339648-4339728 ( 59) GTTCAAAT 1 chrII:13083902-13083982 ( 5) ATTTGAAA 1 chrI:5871988-5872068 ( 51) ATTTGAAA 1 chrII:12678600-12678680 ( 6) ATTTGAAA 1 chrI:3865993-3866073 ( 32) ATTTGAAA 1 chrI:14839825-14839905 ( 17) ATTTGAAA 1 chrV:14456770-14456850 ( 10) ATTTGAAA 1 chrIII:9089599-9089679 ( 64) GTTCAAAT 1 chrIV:15382699-15382779 ( 58) GTTCAAAT 1 chrII:2638216-2638296 ( 11) ATTTGAAA 1 chrI:13628652-13628732 ( 65) GTTTGAAT 1 chrIV:3694822-3694902 ( 54) TTTCGAAT 1 chrI:6970268-6970348 ( 70) TTTCGAAT 1 chrIII:4785884-4785964 ( 59) GTTTGAAT 1 chrIII:5405778-5405858 ( 71) GTTTGAAT 1 chrII:2204242-2204322 ( 57) GTTTGAAT 1 chrI:4302354-4302434 ( 6) ATTTAAAA 1 chrIII:11974581-11974661 ( 29) GTTTGAAT 1 chrV:14645957-14646037 ( 11) ATTTAAAA 1 chrIII:7074131-7074211 ( 60) GTTTGAAT 1 chrIII:2401303-2401383 ( 73) GTTTAAAT 1 chrIV:12209164-12209244 ( 71) TTTCAAAT 1 chrIV:4471082-4471162 ( 37) TTTCAAAT 1 chrV:5939671-5939751 ( 9) TTTCAAAT 1 chrIII:9614363-9614443 ( 20) GTTTAAAT 1 chrIII:11580669-11580749 ( 67) GTTTAAAT 1 chrIV:2275740-2275820 ( 35) GTTTAAAT 1 chrIII:5483858-5483938 ( 70) GTTTAAAT 1 chrV:12184465-12184545 ( 66) TTTCAAAT 1 chrIV:9403952-9404032 ( 45) GTTTAAAT 1 chrV:6593842-6593922 ( 66) TTTTGAAT 1 chrI:8082928-8083008 ( 9) TTTTGAAT 1 chrV:12246257-12246337 ( 67) TTTTGAAT 1 chrI:719961-720041 ( 52) TTTTGAAT 1 chrIV:13206038-13206118 ( 11) GTTCGAAC 1 chrIV:5731760-5731840 ( 67) GTTCAAAC 1 chrIV:17461479-17461559 ( 35) GTTCAAAC 1 chrII:9108637-9108717 ( 46) GTTCAAAC 1 chrIII:5448353-5448433 ( 71) TTTCGAAC 1 chrIII:2477472-2477552 ( 67) TTTCGAAC 1 chrII:5501455-5501535 ( 39) TTTCGAAC 1 chrII:6536100-6536180 ( 6) TTTCAAAC 1 chrV:10813880-10813960 ( 53) GTTCAAAA 1 chrIII:4986962-4987042 ( 58) GTTCAAAA 1 chrV:10031547-10031627 ( 67) GTTCAAAA 1 chrI:3466844-3466924 ( 18) TTTCAAAC 1 chrIV:10242870-10242950 ( 34) TTTCAAAC 1 chrV:11733660-11733740 ( 60) TTTCAAAC 1 chrIII:11565760-11565840 ( 17) TTTCAAAC 1 chrIV:9777700-9777780 ( 72) TTTCGAAA 1 chrI:9226836-9226916 ( 14) TTTTGAAC 1 chrIII:1533249-1533329 ( 56) GTTTGAAA 1 chrII:15208301-15208381 ( 42) TTTTGAAC 1 chrIV:7165870-7165950 ( 62) TTTCGAAA 1 chrV:14734485-14734565 ( 25) GTTTGAAA 1 chrIV:12334870-12334950 ( 45) GTTTGAAA 1 chrI:4829885-4829965 ( 32) TTTTGAAC 1 chrIV:874832-874912 ( 18) TTTTAAAC 1 chrIV:12079041-12079121 ( 14) TTTTAAAC 1 chrV:6838756-6838836 ( 12) TTTTAAAC 1 chrI:13161930-13162010 ( 54) TTTCAAAA 1 chrII:1437711-1437791 ( 62) TTTCAAAA 1 chrII:11599910-11599990 ( 55) TTTCAAAA 1 chrI:3741265-3741345 ( 63) TTTTGAAA 1 chrIII:6710168-6710248 ( 67) TTTTAAAA 1 chrIV:11371815-11371895 ( 66) TTTTAAAA 1 chrIV:1309971-1310051 ( 48) TTTTAAAA 1 chrI:5319323-5319403 ( 49) TTTTAAAA 1 chrIV:8869798-8869878 ( 71) TTTTAAAA 1 chrII:9169630-9169710 ( 42) CTTCAAAT 1 chrIV:9386184-9386264 ( 70) CTTTAAAT 1 chrIII:6009045-6009125 ( 63) CTTTGAAC 1 chrIII:10907849-10907929 ( 16) CTTCGAAA 1 chrV:8248-8328 ( 52) CTTTAAAC 1 chrIII:3070167-3070247 ( 19) ATTCCAAT 1 chrV:8221306-8221386 ( 62) ATTCAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTYRAAT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.68591 E= 3.0e-129 109 -298 -30 -58 -1418 -1418 -1418 182 -1418 -1418 -1418 182 -1418 121 -1418 84 90 -529 109 -1418 181 -1418 -1418 -1418 181 -1418 -1418 -1418 -20 -1 -534 92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTYRAAT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 185 E= 3.0e-129 0.605405 0.027027 0.178378 0.189189 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.491892 0.000000 0.508108 0.529730 0.005405 0.464865 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.248649 0.210811 0.005405 0.535135 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTYRAAT MEME-2 regular expression -------------------------------------------------------------------------------- ATT[TC][AG]AA[TAC] -------------------------------------------------------------------------------- Time 8.89 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGAGYGT MEME-3 width = 8 sites = 24 llr = 237 E-value = 1.4e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGAGYGT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::9:::: pos.-specific C 9::::31: probability G :aa:a:9: matrix T 1::1:7:a bits 2.2 ** * 2.0 ** * 1.8 *** * * 1.6 *** * ** Relative 1.3 ***** ** Entropy 1.1 ******** (14.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGGAGTGT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGYGT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:2401303-2401383 43 1.13e-05 TGCGGGATTC CGGAGTGT CGTTGTATGT chrIV:12209164-12209244 40 1.13e-05 TTCGTAATCT CGGAGTGT CGTTGCTTGA chrI:4958325-4958405 18 1.13e-05 AATGTTACTG CGGAGTGT CGTAGTGTTG chrIV:9525108-9525188 10 1.13e-05 ACTGGGCAA CGGAGTGT CGTTGCGCGC chrII:11440335-11440415 40 1.13e-05 CCCGTTATTT CGGAGTGT CGTTTCTTTG chrIII:6968441-6968521 37 1.13e-05 AGCGAAAGAA CGGAGTGT CGTAAAAGAA chrI:6038162-6038242 59 1.13e-05 GACGGGATAT CGGAGTGT CGTTGTTTAT chrI:1895078-1895158 54 1.13e-05 TGCGGAATAG CGGAGTGT CGTTGCGCGC chrII:12185015-12185095 13 1.13e-05 CGGAGTCTGG CGGAGTGT CGTACTGCGT chrI:7643292-7643372 10 1.13e-05 AAAAGAGAA CGGAGTGT CGTAGCGCGT chrV:12184465-12184545 44 1.13e-05 ATCGTTATAT CGGAGTGT CGTAAGTGGC chrII:1437711-1437791 32 1.13e-05 TGCGGGATTT CGGAGTGT CGTTTGCCTG chrV:19119381-19119461 60 1.97e-05 GGCGGGATTT CGGAGCGT CGTTGCGTGG chrIII:4878418-4878498 56 1.97e-05 AAAAGTGCAG CGGAGCGT GTTTGCATTA chrII:12678600-12678680 61 1.97e-05 ACCGAAATAT CGGAGCGT CGTTGTCTCA chrI:14839825-14839905 52 1.97e-05 TGCGTTATTT CGGAGCGT CGTTGCACAA chrIV:8869798-8869878 32 1.97e-05 CGCGTTAAAG CGGAGCGT CGTAGTGGCG chrI:14101166-14101246 25 3.07e-05 ACTGAAAAGG CGGAGTCT AGCCGGGGGG chrV:20704160-20704240 10 3.07e-05 GCGGGATAT CGGAGTCT CGTTAGCCTT chrIII:9089599-9089679 35 3.07e-05 CGCGGGATAT CGGAGTCT CGTACCCGAC chrIII:9947165-9947245 28 5.01e-05 TCGTCGTTTT CGGTGTGT TCGACGTAGA chrIII:3070167-3070247 65 7.35e-05 GATATTCCGC CGGTGCGT GTTGTTTA chrII:6245456-6245536 40 8.48e-05 TTGTGTTCGC TGGAGCGT GCTTGTTGCT chrIII:12534053-12534133 45 8.48e-05 attttagcga tggagcgt gcttgctcgt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGYGT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:2401303-2401383 1.1e-05 42_[+3]_30 chrIV:12209164-12209244 1.1e-05 39_[+3]_33 chrI:4958325-4958405 1.1e-05 17_[+3]_55 chrIV:9525108-9525188 1.1e-05 9_[+3]_63 chrII:11440335-11440415 1.1e-05 39_[+3]_33 chrIII:6968441-6968521 1.1e-05 36_[+3]_36 chrI:6038162-6038242 1.1e-05 58_[+3]_14 chrI:1895078-1895158 1.1e-05 53_[+3]_19 chrII:12185015-12185095 1.1e-05 12_[+3]_60 chrI:7643292-7643372 1.1e-05 9_[+3]_63 chrV:12184465-12184545 1.1e-05 43_[+3]_29 chrII:1437711-1437791 1.1e-05 31_[+3]_41 chrV:19119381-19119461 2e-05 59_[+3]_13 chrIII:4878418-4878498 2e-05 55_[+3]_17 chrII:12678600-12678680 2e-05 60_[+3]_12 chrI:14839825-14839905 2e-05 51_[+3]_21 chrIV:8869798-8869878 2e-05 31_[+3]_41 chrI:14101166-14101246 3.1e-05 24_[+3]_48 chrV:20704160-20704240 3.1e-05 9_[+3]_63 chrIII:9089599-9089679 3.1e-05 34_[+3]_38 chrIII:9947165-9947245 5e-05 27_[+3]_45 chrIII:3070167-3070247 7.4e-05 64_[+3]_8 chrII:6245456-6245536 8.5e-05 39_[+3]_33 chrIII:12534053-12534133 8.5e-05 44_[+3]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGYGT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGAGYGT width=8 seqs=24 chrIII:2401303-2401383 ( 43) CGGAGTGT 1 chrIV:12209164-12209244 ( 40) CGGAGTGT 1 chrI:4958325-4958405 ( 18) CGGAGTGT 1 chrIV:9525108-9525188 ( 10) CGGAGTGT 1 chrII:11440335-11440415 ( 40) CGGAGTGT 1 chrIII:6968441-6968521 ( 37) CGGAGTGT 1 chrI:6038162-6038242 ( 59) CGGAGTGT 1 chrI:1895078-1895158 ( 54) CGGAGTGT 1 chrII:12185015-12185095 ( 13) CGGAGTGT 1 chrI:7643292-7643372 ( 10) CGGAGTGT 1 chrV:12184465-12184545 ( 44) CGGAGTGT 1 chrII:1437711-1437791 ( 32) CGGAGTGT 1 chrV:19119381-19119461 ( 60) CGGAGCGT 1 chrIII:4878418-4878498 ( 56) CGGAGCGT 1 chrII:12678600-12678680 ( 61) CGGAGCGT 1 chrI:14839825-14839905 ( 52) CGGAGCGT 1 chrIV:8869798-8869878 ( 32) CGGAGCGT 1 chrI:14101166-14101246 ( 25) CGGAGTCT 1 chrV:20704160-20704240 ( 10) CGGAGTCT 1 chrIII:9089599-9089679 ( 35) CGGAGTCT 1 chrIII:9947165-9947245 ( 28) CGGTGTGT 1 chrIII:3070167-3070247 ( 65) CGGTGCGT 1 chrII:6245456-6245536 ( 40) TGGAGCGT 1 chrIII:12534053-12534133 ( 45) TGGAGCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGYGT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.2272 E= 1.4e-010 -1123 211 -1123 -177 -1123 -1123 219 -1123 -1123 -1123 219 -1123 169 -1123 -1123 -177 -1123 -1123 219 -1123 -1123 65 -1123 123 -1123 -77 200 -1123 -1123 -1123 -1123 182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGYGT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.4e-010 0.000000 0.916667 0.000000 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.916667 0.000000 0.000000 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAGYGT MEME-3 regular expression -------------------------------------------------------------------------------- CGGAG[TC]GT -------------------------------------------------------------------------------- Time 13.01 secs. ******************************************************************************** ******************************************************************************** MOTIF GTKTTTKC MEME-4 width = 8 sites = 49 llr = 388 E-value = 5.4e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTKTTTKC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 2::::::: pos.-specific C 1::::1:a probability G 6:3::17: matrix T 1a7aa93: bits 2.2 2.0 * 1.8 * ** * 1.6 * ** * Relative 1.3 * ** * Entropy 1.1 ******* (11.4 bits) 0.9 ******* 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTTTTTGC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTKTTTKC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5448353-5448433 32 1.89e-05 GTTGGCGCGA GTTTTTGC AATGCAAACG chrIII:2769228-2769308 66 1.89e-05 GAATGGCCTA GTTTTTGC AATTCGG chrV:12246257-12246337 52 1.89e-05 ATCGTATTTT GTTTTTGC GCTCTATTTT chrIII:12528178-12528258 34 3.34e-05 TGACGTGACG GTGTTTGC AGACGCCGCA chrIV:8112782-8112862 59 3.34e-05 TGTCGTCACT GTGTTTGC ACAAGAAATT chrIII:9947165-9947245 49 3.34e-05 ACGTAGAACG GTGTTTGC GGCCTAGCGC chrIV:11142615-11142695 21 3.34e-05 GTCATTTGTG GTGTTTGC GTATTTTTGG chrIII:4785884-4785964 23 3.34e-05 TTCCGTTGCG GTGTTTGC GTATTGGTGA chrIV:7632665-7632745 66 3.34e-05 TTGCGTCTCG GTGTTTGC ACACTTT chrI:13840030-13840110 59 3.34e-05 GTCAGATTTG GTGTTTGC GTACAAAGCG chrII:4828215-4828295 58 3.34e-05 TGTCTGCACT GTGTTTGC GGACAAAACA chrIV:12334870-12334950 29 3.34e-05 TTCCGTCGCA GTGTTTGC GGAGTCTTGT chrIV:2275740-2275820 2 3.34e-05 G GTGTTTGC GTACTACACA chrI:534291-534371 40 3.34e-05 TTACGTCGTG GTGTTTGC GTACCTCGGC chrIV:3213550-3213630 7 5.79e-05 TGTTTA GTTTTTTC AATTTAAATT chrIV:2916249-2916329 25 5.79e-05 TTCAAATTTA GTTTTTTC TTTCTTCCAA chrII:14234553-14234633 58 5.79e-05 ATTTTGAAAG GTTTTTTC ATTAAAAAAT chrII:9169630-9169710 54 5.79e-05 TCAAATTTGG GTTTTTTC TGTTTTCCTC chrII:2919247-2919327 61 5.79e-05 AGTTTCGAGG GTTTTTTC TGTAAATTTT chrIII:5587092-5587172 55 5.79e-05 TTTGGTGCAT GTTTTTTC AGCGGTTTTT chrIII:1207999-1208079 50 5.79e-05 TACAATTTCA GTTTTTTC TGGGCGCGGA chrI:14560364-14560444 35 5.79e-05 TTCAAATTTA GTTTTTTC TTGCTTCCAA chrIV:9403952-9404032 56 5.79e-05 TTTAAATTTA GTTTTTTC GTGGAATTTT chrI:4451096-4451176 8 1.20e-04 GCTTCTG CTTTTTGC ATTAGTCCAA chrIII:9912638-9912718 35 1.20e-04 TGCCGCGTTT CTTTTTGC CAGTGTGTCT chrV:5204333-5204413 71 1.20e-04 TGCATTTTCT ATTTTTGC TG chrIII:10093251-10093331 52 1.20e-04 TTGCCACGAG CTTTTTGC GAGGCAATTC chrIII:12377423-12377503 7 1.20e-04 TGGAAG ATTTTTGC ATGATGTTCA chrII:2638216-2638296 73 1.20e-04 GCGTTTGCTT ATTTTTGC chrV:12271614-12271694 19 1.77e-04 TTTCTGGGCA TTTTTTGC ATTAAAAAAT chrIV:7165870-7165950 2 1.77e-04 A ATGTTTGC AACGACACTC chrI:5871988-5872068 63 1.77e-04 TTGAAACACA TTTTTTGC ATTTCTCAAT chrI:5189986-5190066 26 1.77e-04 TGACGTGCAG ATGTTTGC GTATTTCGGC chrII:14413202-14413282 47 2.25e-04 ggttcgtttg gttttggc ggcaaacttg chrIII:9228344-9228424 3 2.25e-04 TA GTTTTCGC GCCTAGGTAA chrIII:10320933-10321013 65 2.25e-04 GTGTTCACAC GTTTTGGC TCGAGCTT chrII:8940497-8940577 29 2.25e-04 ATCAACATGC TTGTTTGC AATCAACAGA chrV:17538685-17538765 21 2.81e-04 CCGAGGTTTG CTTTTTTC ACAGCCATCT chrI:9150328-9150408 69 2.81e-04 TTGAAATTGA ATTTTTTC AGCG chrIV:4471082-4471162 73 2.81e-04 AATTTTCGAT ATTTTTTC chrIV:3011814-3011894 25 2.81e-04 CTCCAAAATC ATTTTTTC TGAAAAGatg chrIV:2670816-2670896 59 2.81e-04 TTAGCGCGAG CTTTTTTC CGCGGGAATT chrIII:11565760-11565840 60 2.81e-04 AGCGCGCATG CTTTTTTC GTTTTTCTTG chrIII:7952269-7952349 1 3.03e-04 . GTGTTGGC AAAGCTGTGA chrV:10031547-10031627 34 3.03e-04 TAAAGACAAG GTGTTCGC ACAATGCAGC chrII:6245456-6245536 32 3.03e-04 GCGTAAATTT GTGTTCGC TGGAGCGTGC chrII:7807073-7807153 66 3.77e-04 GTGGACCGGT TTTTTTTC AATTTCT chrII:8276252-8276332 26 3.77e-04 TCACGCGCCC TTTTTTTC GCATGTGGAT chrI:4958325-4958405 35 4.87e-04 TCGTAGTGTT GTTTTTGG AGGAATATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTKTTTKC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5448353-5448433 1.9e-05 31_[+4]_41 chrIII:2769228-2769308 1.9e-05 65_[+4]_7 chrV:12246257-12246337 1.9e-05 51_[+4]_21 chrIII:12528178-12528258 3.3e-05 33_[+4]_39 chrIV:8112782-8112862 3.3e-05 58_[+4]_14 chrIII:9947165-9947245 3.3e-05 48_[+4]_24 chrIV:11142615-11142695 3.3e-05 20_[+4]_52 chrIII:4785884-4785964 3.3e-05 22_[+4]_50 chrIV:7632665-7632745 3.3e-05 65_[+4]_7 chrI:13840030-13840110 3.3e-05 58_[+4]_14 chrII:4828215-4828295 3.3e-05 57_[+4]_15 chrIV:12334870-12334950 3.3e-05 28_[+4]_44 chrIV:2275740-2275820 3.3e-05 1_[+4]_71 chrI:534291-534371 3.3e-05 39_[+4]_33 chrIV:3213550-3213630 5.8e-05 6_[+4]_66 chrIV:2916249-2916329 5.8e-05 24_[+4]_48 chrII:14234553-14234633 5.8e-05 57_[+4]_15 chrII:9169630-9169710 5.8e-05 53_[+4]_19 chrII:2919247-2919327 5.8e-05 60_[+4]_12 chrIII:5587092-5587172 5.8e-05 54_[+4]_18 chrIII:1207999-1208079 5.8e-05 49_[+4]_23 chrI:14560364-14560444 5.8e-05 34_[+4]_38 chrIV:9403952-9404032 5.8e-05 55_[+4]_17 chrI:4451096-4451176 0.00012 7_[+4]_65 chrIII:9912638-9912718 0.00012 34_[+4]_38 chrV:5204333-5204413 0.00012 70_[+4]_2 chrIII:10093251-10093331 0.00012 51_[+4]_21 chrIII:12377423-12377503 0.00012 6_[+4]_66 chrII:2638216-2638296 0.00012 72_[+4] chrV:12271614-12271694 0.00018 18_[+4]_54 chrIV:7165870-7165950 0.00018 1_[+4]_71 chrI:5871988-5872068 0.00018 62_[+4]_10 chrI:5189986-5190066 0.00018 25_[+4]_47 chrII:14413202-14413282 0.00022 46_[+4]_26 chrIII:9228344-9228424 0.00022 2_[+4]_70 chrIII:10320933-10321013 0.00022 64_[+4]_8 chrII:8940497-8940577 0.00022 28_[+4]_44 chrV:17538685-17538765 0.00028 20_[+4]_52 chrI:9150328-9150408 0.00028 68_[+4]_4 chrIV:4471082-4471162 0.00028 72_[+4] chrIV:3011814-3011894 0.00028 24_[+4]_48 chrIV:2670816-2670896 0.00028 58_[+4]_14 chrIII:11565760-11565840 0.00028 59_[+4]_13 chrIII:7952269-7952349 0.0003 [+4]_72 chrV:10031547-10031627 0.0003 33_[+4]_39 chrII:6245456-6245536 0.0003 31_[+4]_41 chrII:7807073-7807153 0.00038 65_[+4]_7 chrII:8276252-8276332 0.00038 25_[+4]_47 chrI:4958325-4958405 0.00049 34_[+4]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTKTTTKC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTKTTTKC width=8 seqs=49 chrIII:5448353-5448433 ( 32) GTTTTTGC 1 chrIII:2769228-2769308 ( 66) GTTTTTGC 1 chrV:12246257-12246337 ( 52) GTTTTTGC 1 chrIII:12528178-12528258 ( 34) GTGTTTGC 1 chrIV:8112782-8112862 ( 59) GTGTTTGC 1 chrIII:9947165-9947245 ( 49) GTGTTTGC 1 chrIV:11142615-11142695 ( 21) GTGTTTGC 1 chrIII:4785884-4785964 ( 23) GTGTTTGC 1 chrIV:7632665-7632745 ( 66) GTGTTTGC 1 chrI:13840030-13840110 ( 59) GTGTTTGC 1 chrII:4828215-4828295 ( 58) GTGTTTGC 1 chrIV:12334870-12334950 ( 29) GTGTTTGC 1 chrIV:2275740-2275820 ( 2) GTGTTTGC 1 chrI:534291-534371 ( 40) GTGTTTGC 1 chrIV:3213550-3213630 ( 7) GTTTTTTC 1 chrIV:2916249-2916329 ( 25) GTTTTTTC 1 chrII:14234553-14234633 ( 58) GTTTTTTC 1 chrII:9169630-9169710 ( 54) GTTTTTTC 1 chrII:2919247-2919327 ( 61) GTTTTTTC 1 chrIII:5587092-5587172 ( 55) GTTTTTTC 1 chrIII:1207999-1208079 ( 50) GTTTTTTC 1 chrI:14560364-14560444 ( 35) GTTTTTTC 1 chrIV:9403952-9404032 ( 56) GTTTTTTC 1 chrI:4451096-4451176 ( 8) CTTTTTGC 1 chrIII:9912638-9912718 ( 35) CTTTTTGC 1 chrV:5204333-5204413 ( 71) ATTTTTGC 1 chrIII:10093251-10093331 ( 52) CTTTTTGC 1 chrIII:12377423-12377503 ( 7) ATTTTTGC 1 chrII:2638216-2638296 ( 73) ATTTTTGC 1 chrV:12271614-12271694 ( 19) TTTTTTGC 1 chrIV:7165870-7165950 ( 2) ATGTTTGC 1 chrI:5871988-5872068 ( 63) TTTTTTGC 1 chrI:5189986-5190066 ( 26) ATGTTTGC 1 chrII:14413202-14413282 ( 47) GTTTTGGC 1 chrIII:9228344-9228424 ( 3) GTTTTCGC 1 chrIII:10320933-10321013 ( 65) GTTTTGGC 1 chrII:8940497-8940577 ( 29) TTGTTTGC 1 chrV:17538685-17538765 ( 21) CTTTTTTC 1 chrI:9150328-9150408 ( 69) ATTTTTTC 1 chrIV:4471082-4471162 ( 73) ATTTTTTC 1 chrIV:3011814-3011894 ( 25) ATTTTTTC 1 chrIV:2670816-2670896 ( 59) CTTTTTTC 1 chrIII:11565760-11565840 ( 60) CTTTTTTC 1 chrIII:7952269-7952349 ( 1) GTGTTGGC 1 chrV:10031547-10031627 ( 34) GTGTTCGC 1 chrII:6245456-6245536 ( 32) GTGTTCGC 1 chrII:7807073-7807153 ( 66) TTTTTTTC 1 chrII:8276252-8276332 ( 26) TTTTTTTC 1 chrI:4958325-4958405 ( 35) GTTTTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTKTTTKC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.65557 E= 5.4e-007 -80 -80 148 -147 -1226 -1226 -1226 182 -1226 -1226 66 120 -1226 -1226 -1226 182 -1226 -1226 -1226 182 -1226 -180 -184 163 -1226 -1226 158 29 -1226 220 -342 -1226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTKTTTKC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 5.4e-007 0.163265 0.122449 0.612245 0.102041 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.346939 0.653061 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.061224 0.061224 0.877551 0.000000 0.000000 0.653061 0.346939 0.000000 0.979592 0.020408 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTKTTTKC MEME-4 regular expression -------------------------------------------------------------------------------- GT[TG]TTT[GT]C -------------------------------------------------------------------------------- Time 16.14 secs. ******************************************************************************** ******************************************************************************** MOTIF CVCTCCRA MEME-5 width = 8 sites = 51 llr = 393 E-value = 9.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CVCTCCRA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :3::::56 pos.-specific C 74a:aa:2 probability G :4:2::5: matrix T 3::8:::2 bits 2.2 * ** 2.0 * ** 1.8 * ** 1.6 * ** Relative 1.3 * * ** Entropy 1.1 * **** (11.1 bits) 0.9 * ***** 0.7 * ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCTCCAA consensus TG G G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCTCCRA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:5731760-5731840 4 2.59e-05 CGA CGCTCCGA GATTACGACT chrV:15569862-15569942 30 2.59e-05 ATTCAAAATT CCCTCCAA AAGTGTACAA chrIV:2890663-2890743 16 2.59e-05 ATTTGAAATT CCCTCCAA AACGATGCGA chrI:443566-443646 37 2.59e-05 aatttgaatt ccctccaa gatttcaatg chrII:386106-386186 18 2.59e-05 CCTTGCATTT CCCTCCAA AACGACATTC chrV:8031308-8031388 31 2.59e-05 TTTTAATCTT CCCTCCAA TTAGTTTCGC chrV:156527-156607 14 2.59e-05 CGTTTAAATT CCCTCCAA TTTTCGCCCT chrI:4302354-4302434 35 2.59e-05 AAATGGCGAG CGCTCCGA GACCCCAGGA chrIII:491247-491327 12 2.59e-05 AATTTGAAAT CCCTCCAA AAAATAGTCT chrIII:3921818-3921898 3 2.59e-05 GA CGCTCCGA TCTCCCGCTA chrIV:1309971-1310051 13 4.67e-05 CGCACTACGA CACTCCGA AATCCCGCCG chrV:5939671-5939751 34 4.67e-05 AAAACAACGA CACTCCGA AATCCCCTAC chrIII:3070167-3070247 49 4.67e-05 GAATTAACGA CACTCCGA TATTCCGCCG chrIV:1177841-1177921 47 4.67e-05 GAATTAACGA CACTCCGA TATCCCGCCA chrIV:3011814-3011894 13 6.02e-05 ATGGAGAAAA CACTCCAA AATCATTTTT chrV:15578516-15578596 5 6.02e-05 ACGT CACTCCAA TGTTGCGCCG chrIV:992130-992210 34 6.60e-05 ATTCAAACTT CCCTCCGC TTTTCTCCGG chrIII:5448353-5448433 50 9.33e-05 AATGCAAACG CGCTCCAC CGCAAATCTG chrII:11022173-11022253 44 9.33e-05 AATGCAACCG CGCTCCAC TGGACAATTG chrIII:11974581-11974661 13 9.33e-05 AAAGGACTCT CCCGCCGA AATGTCTCGT chrIV:2902112-2902192 31 9.33e-05 AATTTGAACA CCCGCCGA AAAGTTGTCC chrV:8221306-8221386 45 1.15e-04 CGCTCAACAA CCCGCCAA GCAAAATTCA chrIII:2769228-2769308 20 1.15e-04 ATTTAAATTT CGCGCCGA AAAAGTGTTG chrI:1895078-1895158 29 1.15e-04 AATTTGAATA CCCGCCAA TTGAGCGTGC chrIII:2331368-2331448 43 1.15e-04 CGTGTGATTT CCCGCCAA CGAGTTATGC chrI:9585240-9585320 69 1.51e-04 TGAATACGAG CGCGCCAA ACTC chrV:15059717-15059797 30 1.51e-04 TTCGCGCGCT CGCTCCGT AAACACCATG chrIII:4058061-4058141 29 1.51e-04 GTGGCAAGTA CGCTCCGT CGCACTTTTT chrIII:5499116-5499196 23 1.86e-04 gcgcaaacga tgctccga aataacgcat chrI:8018589-8018669 58 1.86e-04 TATTTGAAAC TCCTCCAA TTTGGGGTAC chrIII:9228344-9228424 61 1.86e-04 CAAACAAACG CGCTCCAT CGGAATTCAA chrIV:9386184-9386264 15 1.86e-04 CATTTGAGTT TCCTCCAA AATGAGACAA chrI:10633210-10633290 39 1.86e-04 GATGCAAACA CGCTCCAT GGTGACAAGA chrIV:2670816-2670896 20 1.86e-04 ATTACAACGA TGCTCCGA AATTCCGCCA chrIV:7165870-7165950 15 2.08e-04 TTTGCAACGA CACTCCGC TATCCCGCTT chrV:14991002-14991082 25 2.18e-04 GATCTTACGA CACTCCAC TATTGCGCCC chrV:6043432-6043512 51 2.26e-04 TGAGGTCAAG CACGCCGA CTACAGACAA chrI:12183241-12183321 3 2.78e-04 GA TACTCCGA AATAACGCTA chrV:13437635-13437715 30 3.07e-04 CTTACAACGA TACTCCAA AATGACGGAA chrIV:874832-874912 27 3.45e-04 ATTTTAAACT CCCGCCGT CGAAATTTTG chrI:348381-348461 40 3.45e-04 CTCAGCGGTC TCCTCCAC TTGCACACTA chrV:6593842-6593922 35 3.77e-04 AGAGCAACCG TGCTCCAC CGCACATGGC chrII:2204242-2204322 26 3.77e-04 TGCGCAAGCG TGCTCCAC CGCACACTTC chrIII:12739092-12739172 29 4.14e-04 tatttgaatt tccgccaa tttgatttgt chrII:9169630-9169710 67 4.54e-04 TTTTCTGTTT TCCTCCAT CTTCCG chrII:9242975-9243055 29 4.54e-04 CCAACAACGA TGCTCCGT TCTCCCTGTG chrI:10565992-10566072 46 4.54e-04 CCGCGACGCG CACGCCGC GAATTGTCAG chrII:10350627-10350707 15 4.54e-04 AAGACTACGA TGCTCCGT TATTTTGGCT chrII:9706361-9706441 27 4.76e-04 TGTGCAACCA TGCTCCAT TGGACAGACG chrI:13628652-13628732 11 5.08e-04 TTTAAAGGCG CACGCCGT AAATCGACAG chrIV:5188206-5188286 46 5.08e-04 CTCGGCCGTG TACTCCAC TCGGACAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCTCCRA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:5731760-5731840 2.6e-05 3_[+5]_69 chrV:15569862-15569942 2.6e-05 29_[+5]_43 chrIV:2890663-2890743 2.6e-05 15_[+5]_57 chrI:443566-443646 2.6e-05 36_[+5]_36 chrII:386106-386186 2.6e-05 17_[+5]_55 chrV:8031308-8031388 2.6e-05 30_[+5]_42 chrV:156527-156607 2.6e-05 13_[+5]_59 chrI:4302354-4302434 2.6e-05 34_[+5]_38 chrIII:491247-491327 2.6e-05 11_[+5]_61 chrIII:3921818-3921898 2.6e-05 2_[+5]_70 chrIV:1309971-1310051 4.7e-05 12_[+5]_60 chrV:5939671-5939751 4.7e-05 33_[+5]_39 chrIII:3070167-3070247 4.7e-05 48_[+5]_24 chrIV:1177841-1177921 4.7e-05 46_[+5]_26 chrIV:3011814-3011894 6e-05 12_[+5]_60 chrV:15578516-15578596 6e-05 4_[+5]_68 chrIV:992130-992210 6.6e-05 33_[+5]_39 chrIII:5448353-5448433 9.3e-05 49_[+5]_23 chrII:11022173-11022253 9.3e-05 43_[+5]_29 chrIII:11974581-11974661 9.3e-05 12_[+5]_60 chrIV:2902112-2902192 9.3e-05 30_[+5]_42 chrV:8221306-8221386 0.00012 44_[+5]_28 chrIII:2769228-2769308 0.00012 19_[+5]_53 chrI:1895078-1895158 0.00012 28_[+5]_44 chrIII:2331368-2331448 0.00012 42_[+5]_30 chrI:9585240-9585320 0.00015 68_[+5]_4 chrV:15059717-15059797 0.00015 29_[+5]_43 chrIII:4058061-4058141 0.00015 28_[+5]_44 chrIII:5499116-5499196 0.00019 22_[+5]_50 chrI:8018589-8018669 0.00019 57_[+5]_15 chrIII:9228344-9228424 0.00019 60_[+5]_12 chrIV:9386184-9386264 0.00019 14_[+5]_58 chrI:10633210-10633290 0.00019 38_[+5]_34 chrIV:2670816-2670896 0.00019 19_[+5]_53 chrIV:7165870-7165950 0.00021 14_[+5]_58 chrV:14991002-14991082 0.00022 24_[+5]_48 chrV:6043432-6043512 0.00023 50_[+5]_22 chrI:12183241-12183321 0.00028 2_[+5]_70 chrV:13437635-13437715 0.00031 29_[+5]_43 chrIV:874832-874912 0.00034 26_[+5]_46 chrI:348381-348461 0.00034 39_[+5]_33 chrV:6593842-6593922 0.00038 34_[+5]_38 chrII:2204242-2204322 0.00038 25_[+5]_47 chrIII:12739092-12739172 0.00041 28_[+5]_44 chrII:9169630-9169710 0.00045 66_[+5]_6 chrII:9242975-9243055 0.00045 28_[+5]_44 chrI:10565992-10566072 0.00045 45_[+5]_27 chrII:10350627-10350707 0.00045 14_[+5]_58 chrII:9706361-9706441 0.00048 26_[+5]_46 chrI:13628652-13628732 0.00051 10_[+5]_62 chrIV:5188206-5188286 0.00051 45_[+5]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCTCCRA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CVCTCCRA width=8 seqs=51 chrIV:5731760-5731840 ( 4) CGCTCCGA 1 chrV:15569862-15569942 ( 30) CCCTCCAA 1 chrIV:2890663-2890743 ( 16) CCCTCCAA 1 chrI:443566-443646 ( 37) CCCTCCAA 1 chrII:386106-386186 ( 18) CCCTCCAA 1 chrV:8031308-8031388 ( 31) CCCTCCAA 1 chrV:156527-156607 ( 14) CCCTCCAA 1 chrI:4302354-4302434 ( 35) CGCTCCGA 1 chrIII:491247-491327 ( 12) CCCTCCAA 1 chrIII:3921818-3921898 ( 3) CGCTCCGA 1 chrIV:1309971-1310051 ( 13) CACTCCGA 1 chrV:5939671-5939751 ( 34) CACTCCGA 1 chrIII:3070167-3070247 ( 49) CACTCCGA 1 chrIV:1177841-1177921 ( 47) CACTCCGA 1 chrIV:3011814-3011894 ( 13) CACTCCAA 1 chrV:15578516-15578596 ( 5) CACTCCAA 1 chrIV:992130-992210 ( 34) CCCTCCGC 1 chrIII:5448353-5448433 ( 50) CGCTCCAC 1 chrII:11022173-11022253 ( 44) CGCTCCAC 1 chrIII:11974581-11974661 ( 13) CCCGCCGA 1 chrIV:2902112-2902192 ( 31) CCCGCCGA 1 chrV:8221306-8221386 ( 45) CCCGCCAA 1 chrIII:2769228-2769308 ( 20) CGCGCCGA 1 chrI:1895078-1895158 ( 29) CCCGCCAA 1 chrIII:2331368-2331448 ( 43) CCCGCCAA 1 chrI:9585240-9585320 ( 69) CGCGCCAA 1 chrV:15059717-15059797 ( 30) CGCTCCGT 1 chrIII:4058061-4058141 ( 29) CGCTCCGT 1 chrIII:5499116-5499196 ( 23) TGCTCCGA 1 chrI:8018589-8018669 ( 58) TCCTCCAA 1 chrIII:9228344-9228424 ( 61) CGCTCCAT 1 chrIV:9386184-9386264 ( 15) TCCTCCAA 1 chrI:10633210-10633290 ( 39) CGCTCCAT 1 chrIV:2670816-2670896 ( 20) TGCTCCGA 1 chrIV:7165870-7165950 ( 15) CACTCCGC 1 chrV:14991002-14991082 ( 25) CACTCCAC 1 chrV:6043432-6043512 ( 51) CACGCCGA 1 chrI:12183241-12183321 ( 3) TACTCCGA 1 chrV:13437635-13437715 ( 30) TACTCCAA 1 chrIV:874832-874912 ( 27) CCCGCCGT 1 chrI:348381-348461 ( 40) TCCTCCAC 1 chrV:6593842-6593922 ( 35) TGCTCCAC 1 chrII:2204242-2204322 ( 26) TGCTCCAC 1 chrIII:12739092-12739172 ( 29) TCCGCCAA 1 chrII:9169630-9169710 ( 67) TCCTCCAT 1 chrII:9242975-9243055 ( 29) TGCTCCGT 1 chrI:10565992-10566072 ( 46) CACGCCGC 1 chrII:10350627-10350707 ( 15) TGCTCCGT 1 chrII:9706361-9706441 ( 27) TGCTCCAT 1 chrI:13628652-13628732 ( 11) CACGCCGT 1 chrIV:5188206-5188286 ( 46) TACTCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCTCCRA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.63023 E= 9.1e-004 -1232 173 -1232 5 -5 81 69 -1232 -1232 223 -1232 -1232 -1232 -1232 10 143 -1232 223 -1232 -1232 -1232 223 -1232 -1232 95 -1232 104 -1232 109 -12 -1232 -53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCTCCRA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 9.1e-004 0.000000 0.705882 0.000000 0.294118 0.274510 0.372549 0.352941 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.235294 0.764706 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.549020 0.000000 0.450980 0.000000 0.607843 0.196078 0.000000 0.196078 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCTCCRA MEME-5 regular expression -------------------------------------------------------------------------------- [CT][CGA]C[TG]CC[AG]A -------------------------------------------------------------------------------- Time 19.16 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:11599910-11599990 7.48e-03 80 chrI:14163339-14163419 1.25e-02 10_[+2(5.69e-05)]_62 chrIV:10697725-10697805 3.78e-01 80 chrII:2638216-2638296 4.25e-04 80 chrII:1437711-1437791 4.98e-03 31_[+3(1.13e-05)]_41 chrIV:15382699-15382779 5.14e-03 80 chrV:12450599-12450679 3.81e-02 80 chrII:2032441-2032521 7.39e-04 45_[+2(8.99e-05)]_[+1(4.73e-06)]_19 chrIII:9089599-9089679 1.46e-03 34_[+3(3.07e-05)]_38 chrIV:8869798-8869878 2.12e-03 31_[+3(1.97e-05)]_41 chrIV:9403952-9404032 5.02e-04 55_[+4(5.79e-05)]_17 chrV:14456770-14456850 7.81e-02 80 chrV:12184465-12184545 3.64e-03 43_[+3(1.13e-05)]_29 chrIV:11125763-11125843 4.05e-03 80 chrI:5138057-5138137 2.36e-04 1_[+2(5.69e-05)]_42_[+1(1.72e-05)]_\ 21 chrIV:992130-992210 4.34e-04 33_[+5(6.60e-05)]_18_[+5(9.33e-05)]_\ 13 chrI:14839825-14839905 6.46e-04 51_[+3(1.97e-05)]_21 chrIV:773085-773165 4.80e-03 48_[+1(5.54e-05)]_24 chrIV:1177841-1177921 1.26e-04 32_[+2(8.99e-05)]_6_[+5(4.67e-05)]_\ 26 chrI:534291-534371 4.90e-03 39_[+4(3.34e-05)]_33 chrI:4829885-4829965 1.99e-02 80 chrIII:12278916-12278996 2.94e-03 72_[+1(5.54e-05)] chrV:15395073-15395153 1.95e-02 52_[+2(8.99e-05)]_20 chrI:5189986-5190066 5.30e-03 80 chrI:3910669-3910749 1.88e-01 80 chrI:7643292-7643372 1.16e-04 9_[+3(1.13e-05)]_34_[+2(8.99e-05)]_\ 21 chrV:6043432-6043512 6.78e-03 80 chrI:6626878-6626958 2.87e-01 80 chrII:10783359-10783439 1.26e-03 80 chrIII:5483858-5483938 3.68e-02 80 chrIII:11565760-11565840 3.61e-04 48_[+1(5.54e-05)]_24 chrIII:12377423-12377503 6.88e-05 59_[+2(5.69e-05)]_13 chrI:7940752-7940832 4.52e-03 80 chrIV:2275740-2275820 1.09e-02 1_[+4(3.34e-05)]_71 chrIII:8614660-8614740 1.66e-02 60_[+2(8.99e-05)]_12 chrII:12185015-12185095 1.58e-02 2_[+3(3.07e-05)]_2_[+3(1.13e-05)]_\ 60 chrIV:4357440-4357520 1.02e-02 80 chrIII:3921818-3921898 3.86e-04 2_[+5(2.59e-05)]_70 chrIV:2670816-2670896 1.20e-03 80 chrII:9108637-9108717 9.06e-02 80 chrII:10579024-10579104 1.19e-01 7_[+2(5.69e-05)]_65 chrI:14560364-14560444 3.01e-06 15_[+1(4.73e-06)]_[+2(5.69e-05)]_3_\ [+4(5.79e-05)]_38 chrI:3865993-3866073 2.60e-03 80 chrII:12678600-12678680 6.67e-05 60_[+3(1.97e-05)]_12 chrII:10350627-10350707 8.85e-04 68_[+2(5.69e-05)]_4 chrIII:2331368-2331448 2.29e-04 23_[+2(5.69e-05)]_49 chrIII:10093251-10093331 1.11e-02 80 chrIII:1207999-1208079 5.92e-06 29_[+5(9.33e-05)]_12_[+4(5.79e-05)]_\ 10_[+2(2.47e-05)]_5 chrI:5871988-5872068 5.02e-03 80 chrIII:11580669-11580749 1.52e-01 80 chrV:5596547-5596627 1.65e-03 58_[+2(5.69e-05)]_14 chrIV:7478280-7478360 2.52e-01 80 chrIII:9614363-9614443 5.04e-04 80 chrV:1893053-1893133 1.38e-02 80 chrV:3743349-3743429 2.66e-02 80 chrV:13437635-13437715 8.18e-04 80 chrV:18086934-18087014 8.04e-05 8_[+2(2.47e-05)]_1_[+1(1.09e-05)]_\ 55 chrI:9581601-9581681 1.23e-01 59_[+2(5.69e-05)]_13 chrIII:3070167-3070247 2.06e-04 48_[+5(4.67e-05)]_8_[+3(7.35e-05)]_\ 8 chrI:1895078-1895158 7.47e-06 19_[+2(8.99e-05)]_26_[+3(1.13e-05)]_\ 19 chrIII:4058061-4058141 5.93e-02 80 chrIII:12534053-12534133 7.82e-04 44_[+3(8.48e-05)]_28 chrI:719961-720041 1.01e-02 20_[+5(9.33e-05)]_52 chrI:13161930-13162010 8.84e-03 80 chrI:10633210-10633290 5.61e-02 80 chrI:4788974-4789054 2.56e-01 80 chrI:3605759-3605839 8.29e-02 80 chrIV:2902112-2902192 1.99e-05 15_[+2(2.47e-05)]_7_[+5(9.33e-05)]_\ 42 chrI:3600860-3600940 1.23e-02 59_[+2(5.69e-05)]_13 chrII:13083902-13083982 7.91e-03 80 chrIII:5587092-5587172 3.02e-04 54_[+4(5.79e-05)]_18 chrV:12246257-12246337 2.20e-04 51_[+4(1.89e-05)]_21 chrIV:12334870-12334950 1.38e-06 35_[+3(3.07e-05)]_13_[+1(1.72e-05)]_\ 16 chrV:4339648-4339728 5.24e-03 80 chrV:14734485-14734565 9.49e-03 41_[+1(7.83e-05)]_31 chrII:6245456-6245536 4.52e-03 39_[+3(8.48e-05)]_33 chrII:6321170-6321250 9.59e-03 62_[+2(5.69e-05)]_10 chrI:12426864-12426944 2.49e-04 80 chrIII:12152301-12152381 4.65e-03 80 chrIV:6369673-6369753 8.39e-04 43_[+2(5.69e-05)]_29 chrIII:6869441-6869521 1.69e-01 80 chrIII:9571037-9571117 1.10e-01 80 chrIII:7074131-7074211 1.00e-02 80 chrII:8940497-8940577 3.48e-03 80 chrIII:6889519-6889599 2.63e-04 80 chrV:14645957-14646037 4.74e-03 80 chrIII:491247-491327 3.16e-05 11_[+5(2.59e-05)]_40_[+1(5.54e-05)]_\ 13 chrI:5319323-5319403 1.20e-01 80 chrII:2919247-2919327 1.01e-03 60_[+4(5.79e-05)]_12 chrIII:11974581-11974661 3.47e-03 12_[+5(9.33e-05)]_60 chrV:11733660-11733740 6.99e-03 25_[+1(5.54e-05)]_47 chrI:4302354-4302434 2.20e-04 34_[+5(2.59e-05)]_38 chrIV:10242870-10242950 8.19e-03 80 chrIII:5959188-5959268 4.42e-02 71_[+2(5.69e-05)]_1 chrII:5501455-5501535 1.64e-01 80 chrII:4828215-4828295 1.31e-03 57_[+4(3.34e-05)]_15 chrV:156527-156607 1.09e-05 13_[+5(2.59e-05)]_21_[+1(3.03e-05)]_\ 30 chrV:9645653-9645733 2.29e-03 8_[+2(2.47e-05)]_64 chrV:15578516-15578596 8.22e-06 4_[+5(6.02e-05)]_8_[+3(3.89e-05)]_\ 39_[+2(2.47e-05)]_5 chrI:13840030-13840110 3.99e-04 32_[+4(5.79e-05)]_18_[+4(3.34e-05)]_\ 14 chrV:5204333-5204413 9.73e-04 17_[+2(8.99e-05)]_55 chrI:3741265-3741345 3.50e-03 80 chrI:8082928-8083008 8.15e-03 80 chrI:6038162-6038242 6.51e-05 24_[+2(5.69e-05)]_26_[+3(1.13e-05)]_\ 14 chrIII:2805243-2805323 2.45e-02 80 chrIII:9747320-9747400 1.08e-01 80 chrIV:7165870-7165950 1.13e-03 80 chrV:5939671-5939751 1.38e-03 33_[+5(4.67e-05)]_39 chrII:2204242-2204322 1.28e-03 80 chrI:10185768-10185848 4.87e-03 66_[+2(2.47e-05)]_6 chrIII:5405778-5405858 6.85e-03 80 chrI:9962095-9962175 5.13e-01 80 chrIII:8628535-8628615 2.07e-01 80 chrI:509971-510051 1.73e-01 80 chrI:15035926-15036006 3.62e-02 35_[+1(3.03e-05)]_37 chrIII:10248581-10248661 6.93e-03 22_[+1(1.09e-05)]_17_[+1(5.54e-05)]_\ 25 chrII:8276252-8276332 2.59e-03 80 chrIV:2613290-2613370 4.88e-02 80 chrI:3466844-3466924 6.75e-03 26_[+1(5.54e-05)]_16_[+1(5.54e-05)]_\ 22 chrIII:9776088-9776168 3.91e-02 80 chrII:9706361-9706441 4.58e-03 80 chrIII:6968441-6968521 2.80e-02 36_[+3(1.13e-05)]_36 chrII:9319515-9319595 1.51e-01 32_[+2(8.99e-05)]_40 chrI:10565992-10566072 2.63e-02 80 chrIV:5188206-5188286 3.45e-03 10_[+1(1.09e-05)]_62 chrV:8302696-8302776 1.91e-02 80 chrI:7559634-7559714 2.46e-02 17_[+2(8.99e-05)]_55 chrI:4747525-4747605 1.32e-04 80 chrI:5937102-5937182 5.00e-02 80 chrII:6974185-6974265 3.48e-02 80 chrIV:3011814-3011894 4.33e-03 12_[+5(6.02e-05)]_28_[+5(9.33e-05)]_\ 24 chrIV:9104503-9104583 4.45e-03 80 chrIV:9386184-9386264 1.84e-03 80 chrIII:4878418-4878498 3.85e-06 26_[+1(1.09e-05)]_21_[+3(1.97e-05)]_\ 17 chrIII:8809720-8809800 6.53e-05 18_[+1(5.54e-05)]_27_[+2(2.47e-05)]_\ 19 chrII:11106487-11106567 7.30e-03 69_[+2(8.99e-05)]_3 chrIII:10320933-10321013 3.09e-03 80 chrII:15208301-15208381 1.23e-02 80 chrV:6593842-6593922 2.36e-02 80 chrIV:7632665-7632745 1.40e-03 65_[+4(3.34e-05)]_7 chrI:12183241-12183321 1.51e-03 18_[+1(7.83e-05)]_54 chrIII:7068814-7068894 5.43e-02 80 chrI:348381-348461 1.45e-02 80 chrIII:6615209-6615289 4.40e-03 80 chrV:10031547-10031627 5.74e-02 80 chrIV:1309971-1310051 8.60e-04 12_[+5(4.67e-05)]_60 chrIII:9228344-9228424 3.65e-05 72_[+2(5.69e-05)] chrV:19405506-19405586 5.40e-02 80 chrIII:4785884-4785964 1.71e-03 22_[+4(3.34e-05)]_50 chrV:7955334-7955414 4.78e-01 80 chrV:14991002-14991082 8.16e-03 80 chrV:8031308-8031388 1.48e-02 30_[+5(2.59e-05)]_42 chrIV:13206038-13206118 1.12e-03 80 chrIV:11371815-11371895 1.56e-01 80 chrII:386106-386186 7.76e-03 17_[+5(2.59e-05)]_55 chrIII:10907849-10907929 2.81e-01 80 chrV:9930766-9930846 1.64e-02 38_[+3(9.57e-05)]_34 chrIV:11142615-11142695 9.25e-05 20_[+4(3.34e-05)]_52 chrII:11132697-11132777 4.49e-03 27_[+1(7.83e-05)]_45 chrIII:1533249-1533329 2.17e-03 80 chrII:11440335-11440415 1.06e-04 39_[+3(1.13e-05)]_33 chrIII:13341045-13341125 5.15e-02 80 chrIII:13439565-13439645 6.54e-02 80 chrI:13367727-13367807 1.36e-01 80 chrII:8566237-8566317 4.50e-02 80 chrI:4788562-4788642 5.89e-03 80 chrI:2010514-2010594 2.14e-01 80 chrIII:5989545-5989625 1.60e-02 80 chrIII:9912638-9912718 2.28e-03 80 chrIII:2477472-2477552 3.89e-02 80 chrI:9226836-9226916 8.19e-04 80 chrII:10714387-10714467 3.99e-02 71_[+2(8.99e-05)]_1 chrV:12271614-12271694 4.31e-03 80 chrI:8852322-8852402 2.29e-01 80 chrIII:12739092-12739172 1.41e-04 19_[+2(8.99e-05)]_25_[+1(5.54e-05)]_\ 20 chrIV:7946619-7946699 1.19e-01 80 chrV:20704160-20704240 5.81e-03 9_[+3(3.07e-05)]_63 chrIII:4986962-4987042 7.39e-02 80 chrI:14101166-14101246 3.43e-02 24_[+3(3.07e-05)]_48 chrI:8018589-8018669 7.15e-02 80 chrIII:6710168-6710248 1.69e-02 57_[+1(1.72e-05)]_15 chrIII:2769228-2769308 5.45e-06 65_[+4(1.89e-05)]_7 chrIII:5190345-5190425 3.80e-04 10_[+2(8.99e-05)]_1_[+1(3.03e-05)]_\ 53 chrV:16499176-16499256 4.13e-01 80 chrIII:9947165-9947245 7.86e-04 27_[+3(5.01e-05)]_13_[+4(3.34e-05)]_\ 24 chrV:8248-8328 3.17e-02 80 chrII:9242975-9243055 1.44e-01 80 chrIV:12854892-12854972 2.11e-02 8_[+1(1.09e-05)]_64 chrV:19119381-19119461 7.50e-03 59_[+3(1.97e-05)]_13 chrIV:8112782-8112862 2.43e-03 6_[+2(5.69e-05)]_44_[+4(3.34e-05)]_\ 14 chrIII:9848768-9848848 2.02e-02 18_[+2(8.99e-05)]_54 chrI:2830388-2830468 4.96e-02 69_[+2(8.99e-05)]_3 chrV:6838756-6838836 2.05e-02 80 chrV:965038-965118 5.88e-02 80 chrIV:17461479-17461559 3.14e-03 24_[+1(1.09e-05)]_48 chrIII:6009045-6009125 1.80e-01 80 chrIV:1239876-1239956 3.93e-02 68_[+2(5.69e-05)]_4 chrV:10813880-10813960 5.43e-05 43_[+1(4.73e-06)]_29 chrI:6970268-6970348 1.44e-02 80 chrIV:12079041-12079121 1.13e-01 80 chrI:3438938-3439018 2.66e-01 80 chrIV:874832-874912 4.41e-03 80 chrII:9169630-9169710 5.42e-05 53_[+4(5.79e-05)]_19 chrI:2306856-2306936 6.56e-03 26_[+2(2.47e-05)]_46 chrV:15059717-15059797 1.17e-04 20_[+1(1.09e-05)]_52 chrII:6536100-6536180 1.46e-02 80 chrII:14234553-14234633 1.86e-04 41_[+2(2.47e-05)]_8_[+4(5.79e-05)]_\ 15 chrI:10591701-10591781 1.05e-03 52_[+1(1.72e-05)]_1_[+2(5.69e-05)]_\ 11 chrIV:4471082-4471162 9.45e-04 80 chrIV:4031227-4031307 8.13e-03 64_[+2(8.99e-05)]_8 chrI:443566-443646 1.97e-04 27_[+2(8.99e-05)]_1_[+5(2.59e-05)]_\ 36 chrII:11022173-11022253 1.36e-03 8_[+2(8.99e-05)]_27_[+5(9.33e-05)]_\ 29 chrIII:7952269-7952349 3.82e-03 80 chrI:3228068-3228148 1.30e-02 80 chrIII:9794125-9794205 1.54e-01 80 chrII:2504558-2504638 1.95e-03 71_[+1(5.54e-05)]_1 chrI:10173222-10173302 2.51e-01 80 chrIV:2916249-2916329 1.27e-05 5_[+1(4.73e-06)]_[+2(5.69e-05)]_3_\ [+4(5.79e-05)]_48 chrV:10661601-10661681 8.96e-01 80 chrIV:9525108-9525188 3.80e-04 9_[+3(1.13e-05)]_63 chrI:9585240-9585320 9.38e-04 33_[+1(1.72e-05)]_24_[+1(5.54e-05)]_\ 7 chrI:4958325-4958405 3.36e-03 17_[+3(1.13e-05)]_55 chrV:8221306-8221386 2.97e-03 80 chrI:9150328-9150408 3.12e-02 80 chrIII:9393450-9393530 3.90e-01 80 chrII:7807073-7807153 1.13e-02 80 chrIV:2890663-2890743 2.10e-02 15_[+5(2.59e-05)]_57 chrIII:12528178-12528258 5.21e-03 33_[+4(3.34e-05)]_39 chrIV:3694822-3694902 3.90e-04 80 chrV:17538685-17538765 3.69e-03 63_[+2(2.47e-05)]_9 chrIV:12209164-12209244 9.08e-05 39_[+3(1.13e-05)]_33 chrI:4451096-4451176 6.59e-03 80 chrV:15569862-15569942 2.09e-02 29_[+5(2.59e-05)]_13_[+5(4.67e-05)]_\ 22 chrI:10622859-10622939 9.68e-01 80 chrIII:5448353-5448433 1.74e-05 31_[+4(1.89e-05)]_10_[+5(9.33e-05)]_\ 23 chrIII:5499116-5499196 4.23e-03 [+2(8.99e-05)]_72 chrI:13628652-13628732 7.94e-03 80 chrIV:3213550-3213630 7.80e-05 6_[+4(5.79e-05)]_66 chrII:8158145-8158225 1.02e-01 80 chrIV:9777700-9777780 1.16e-02 80 chrI:13572085-13572165 9.77e-03 35_[+2(2.47e-05)]_37 chrX:1845654-1845734 1.85e-01 42_[+2(5.69e-05)]_30 chrI:2773944-2774024 5.87e-01 80 chrII:14413202-14413282 2.00e-05 27_[+5(3.63e-05)]_45 chrIV:6548763-6548843 6.15e-03 80 chrI:3908555-3908635 5.15e-02 48_[+1(3.03e-05)]_24 chrIII:2401303-2401383 9.01e-04 42_[+3(1.13e-05)]_30 chrIII:9542972-9543052 1.98e-01 80 chrIV:5731760-5731840 1.81e-03 3_[+5(2.59e-05)]_69 chrIII:10642948-10643028 1.32e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************