******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/dve-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:6185732-6185812 1.0000 80 chrI:10382050-10382130 1.0000 80 chrX:8720028-8720108 1.0000 80 chrIII:10196960-10197040 1.0000 80 chrX:6445397-6445477 1.0000 80 chrII:7815096-7815176 1.0000 80 chrIII:9689547-9689627 1.0000 80 chrX:8756111-8756191 1.0000 80 chrIV:10811001-10811081 1.0000 80 chrV:5192623-5192703 1.0000 80 chrV:19051539-19051619 1.0000 80 chrIV:2798526-2798606 1.0000 80 chrIV:10796845-10796925 1.0000 80 chrI:2761073-2761153 1.0000 80 chrX:15408667-15408747 1.0000 80 chrIV:5666318-5666398 1.0000 80 chrII:5203079-5203159 1.0000 80 chrX:3842694-3842774 1.0000 80 chrV:13530861-13530941 1.0000 80 chrII:8739148-8739228 1.0000 80 chrIV:8952359-8952439 1.0000 80 chrIV:12199865-12199945 1.0000 80 chrV:6476196-6476276 1.0000 80 chrX:2754684-2754764 1.0000 80 chrIV:4482707-4482787 1.0000 80 chrX:6674483-6674563 1.0000 80 chrIV:13327228-13327308 1.0000 80 chrII:12823604-12823684 1.0000 80 chrX:2320699-2320779 1.0000 80 chrX:11481146-11481226 1.0000 80 chrV:1456781-1456861 1.0000 80 chrIV:17174241-17174321 1.0000 80 chrIV:10881391-10881471 1.0000 80 chrX:8932550-8932630 1.0000 80 chrIV:13728011-13728091 1.0000 80 chrV:384653-384733 1.0000 80 chrX:6274435-6274515 1.0000 80 chrIII:9035185-9035265 1.0000 80 chrV:9791529-9791609 1.0000 80 chrX:2107598-2107678 1.0000 80 chrX:8714064-8714144 1.0000 80 chrX:6530768-6530848 1.0000 80 chrIII:8733851-8733931 1.0000 80 chrX:8428515-8428595 1.0000 80 chrII:8074210-8074290 1.0000 80 chrIII:11881721-11881801 1.0000 80 chrX:2841964-2842044 1.0000 80 chrX:4248609-4248689 1.0000 80 chrII:14043395-14043475 1.0000 80 chrIV:11289120-11289200 1.0000 80 chrX:6517586-6517666 1.0000 80 chrI:9401858-9401938 1.0000 80 chrIII:5291463-5291543 1.0000 80 chrX:3952867-3952947 1.0000 80 chrII:4943013-4943093 1.0000 80 chrIV:10795835-10795915 1.0000 80 chrV:10432756-10432836 1.0000 80 chrX:9415909-9415989 1.0000 80 chrX:9850417-9850497 1.0000 80 chrI:14051961-14052041 1.0000 80 chrV:2324452-2324532 1.0000 80 chrIII:13626882-13626962 1.0000 80 chrI:6119664-6119744 1.0000 80 chrII:8226611-8226691 1.0000 80 chrX:2695393-2695473 1.0000 80 chrII:9468556-9468636 1.0000 80 chrIV:4821976-4822056 1.0000 80 chrIII:13526404-13526484 1.0000 80 chrX:8567369-8567449 1.0000 80 chrV:16075454-16075534 1.0000 80 chrII:5557304-5557384 1.0000 80 chrI:10586825-10586905 1.0000 80 chrI:7553042-7553122 1.0000 80 chrV:2327316-2327396 1.0000 80 chrX:8719003-8719083 1.0000 80 chrIII:9582393-9582473 1.0000 80 chrV:10280244-10280324 1.0000 80 chrIII:6180450-6180530 1.0000 80 chrII:14616523-14616603 1.0000 80 chrIII:2870360-2870440 1.0000 80 chrX:9858242-9858322 1.0000 80 chrX:17064986-17065066 1.0000 80 chrV:13740053-13740133 1.0000 80 chrI:10753133-10753213 1.0000 80 chrX:13415869-13415949 1.0000 80 chrIV:8151922-8152002 1.0000 80 chrIV:17171938-17172018 1.0000 80 chrIII:8326293-8326373 1.0000 80 chrIV:6500974-6501054 1.0000 80 chrI:12949897-12949977 1.0000 80 chrI:5207780-5207860 1.0000 80 chrIV:13057556-13057636 1.0000 80 chrX:4215695-4215775 1.0000 80 chrI:9386038-9386118 1.0000 80 chrII:13079024-13079104 1.0000 80 chrIII:6872702-6872782 1.0000 80 chrIII:6088111-6088191 1.0000 80 chrV:8905806-8905886 1.0000 80 chrV:5560034-5560114 1.0000 80 chrV:1176404-1176484 1.0000 80 chrII:7166898-7166978 1.0000 80 chrIII:10822693-10822773 1.0000 80 chrX:651781-651861 1.0000 80 chrX:3829785-3829865 1.0000 80 chrII:12425954-12426034 1.0000 80 chrX:5468025-5468105 1.0000 80 chrX:11408133-11408213 1.0000 80 chrIII:9857232-9857312 1.0000 80 chrIV:9802882-9802962 1.0000 80 chrX:10074368-10074448 1.0000 80 chrII:14811597-14811677 1.0000 80 chrIV:8450702-8450782 1.0000 80 chrIV:6093634-6093714 1.0000 80 chrII:4770029-4770109 1.0000 80 chrX:4974634-4974714 1.0000 80 chrIII:1002661-1002741 1.0000 80 chrX:3115917-3115997 1.0000 80 chrX:7725762-7725842 1.0000 80 chrIII:5267695-5267775 1.0000 80 chrV:13745041-13745121 1.0000 80 chrX:10477782-10477862 1.0000 80 chrIV:6818543-6818623 1.0000 80 chrII:5281329-5281409 1.0000 80 chrIV:6576125-6576205 1.0000 80 chrII:4966749-4966829 1.0000 80 chrI:5408479-5408559 1.0000 80 chrV:9202859-9202939 1.0000 80 chrII:9291786-9291866 1.0000 80 chrIII:3370180-3370260 1.0000 80 chrX:6427321-6427401 1.0000 80 chrII:5748550-5748630 1.0000 80 chrII:9931622-9931702 1.0000 80 chrV:13377268-13377348 1.0000 80 chrI:5388629-5388709 1.0000 80 chrI:6988497-6988577 1.0000 80 chrIV:2711414-2711494 1.0000 80 chrV:6399111-6399191 1.0000 80 chrV:16278091-16278171 1.0000 80 chrIV:10236264-10236344 1.0000 80 chrI:12184997-12185077 1.0000 80 chrIV:5350945-5351025 1.0000 80 chrIII:3253883-3253963 1.0000 80 chrIV:8949209-8949289 1.0000 80 chrIV:6432513-6432593 1.0000 80 chrV:13891656-13891736 1.0000 80 chrX:11992383-11992463 1.0000 80 chrX:8824635-8824715 1.0000 80 chrIII:7758730-7758810 1.0000 80 chrII:7290122-7290202 1.0000 80 chrX:10916373-10916453 1.0000 80 chrIII:11026796-11026876 1.0000 80 chrIV:10059375-10059455 1.0000 80 chrX:3102380-3102460 1.0000 80 chrX:13685868-13685948 1.0000 80 chrV:13986991-13987071 1.0000 80 chrIV:14561843-14561923 1.0000 80 chrV:18782921-18783001 1.0000 80 chrI:1919366-1919446 1.0000 80 chrIII:9714893-9714973 1.0000 80 chrV:4720127-4720207 1.0000 80 chrII:6026803-6026883 1.0000 80 chrV:13529306-13529386 1.0000 80 chrII:12518145-12518225 1.0000 80 chrIV:5659600-5659680 1.0000 80 chrII:2805072-2805152 1.0000 80 chrIII:1602864-1602944 1.0000 80 chrII:10594933-10595013 1.0000 80 chrI:10532458-10532538 1.0000 80 chrIV:14413557-14413637 1.0000 80 chrV:12937231-12937311 1.0000 80 chrII:13665408-13665488 1.0000 80 chrV:10399487-10399567 1.0000 80 chrI:6416931-6417011 1.0000 80 chrI:5431432-5431512 1.0000 80 chrII:4604276-4604356 1.0000 80 chrII:2415619-2415699 1.0000 80 chrII:7558195-7558275 1.0000 80 chrX:17502419-17502499 1.0000 80 chrIV:12842289-12842369 1.0000 80 chrII:5561552-5561632 1.0000 80 chrX:16679268-16679348 1.0000 80 chrIV:9668236-9668316 1.0000 80 chrIV:7520445-7520525 1.0000 80 chrIII:1388521-1388601 1.0000 80 chrV:6489052-6489132 1.0000 80 chrV:20165979-20166059 1.0000 80 chrV:16043837-16043917 1.0000 80 chrI:5587638-5587718 1.0000 80 chrIII:11087589-11087669 1.0000 80 chrIII:3834987-3835067 1.0000 80 chrIV:13346227-13346307 1.0000 80 chrV:14852125-14852205 1.0000 80 chrX:6338616-6338696 1.0000 80 chrV:8383821-8383901 1.0000 80 chrIV:6880580-6880660 1.0000 80 chrV:2875601-2875681 1.0000 80 chrX:12197504-12197584 1.0000 80 chrX:16677790-16677870 1.0000 80 chrX:6257083-6257163 1.0000 80 chrII:6701657-6701737 1.0000 80 chrI:4161221-4161301 1.0000 80 chrI:13381560-13381640 1.0000 80 chrX:17375993-17376073 1.0000 80 chrI:6418813-6418893 1.0000 80 chrX:7316869-7316949 1.0000 80 chrIII:11822557-11822637 1.0000 80 chrX:12780798-12780878 1.0000 80 chrV:10936840-10936920 1.0000 80 chrX:1046593-1046673 1.0000 80 chrIII:14844-14924 1.0000 80 chrX:5109299-5109379 1.0000 80 chrIV:9401912-9401992 1.0000 80 chrIII:6169064-6169144 1.0000 80 chrX:13060165-13060245 1.0000 80 chrII:9740689-9740769 1.0000 80 chrV:16726117-16726197 1.0000 80 chrII:3953075-3953155 1.0000 80 chrIV:6802255-6802335 1.0000 80 chrIV:7180498-7180578 1.0000 80 chrI:7174279-7174359 1.0000 80 chrIII:7154653-7154733 1.0000 80 chrIII:13732826-13732906 1.0000 80 chrI:3113682-3113762 1.0000 80 chrV:10750796-10750876 1.0000 80 chrII:5751523-5751603 1.0000 80 chrII:8484737-8484817 1.0000 80 chrV:15354846-15354926 1.0000 80 chrV:8270055-8270135 1.0000 80 chrX:15494303-15494383 1.0000 80 chrII:8567010-8567090 1.0000 80 chrX:4698467-4698547 1.0000 80 chrIII:154334-154414 1.0000 80 chrIII:8657117-8657197 1.0000 80 chrIV:3548478-3548558 1.0000 80 chrV:18578426-18578506 1.0000 80 chrIII:12325425-12325505 1.0000 80 chrX:9364210-9364290 1.0000 80 chrX:13767412-13767492 1.0000 80 chrX:3576418-3576498 1.0000 80 chrV:12638940-12639020 1.0000 80 chrIV:4821153-4821233 1.0000 80 chrIII:2760903-2760983 1.0000 80 chrV:13012022-13012102 1.0000 80 chrX:6607741-6607821 1.0000 80 chrIII:9850167-9850247 1.0000 80 chrV:10693894-10693974 1.0000 80 chrV:10802217-10802297 1.0000 80 chrI:9428834-9428914 1.0000 80 chrIV:12400172-12400252 1.0000 80 chrII:12980385-12980465 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_dve-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/dve-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.321 C 0.18 G 0.186 T 0.313 Background letter frequencies (from file dataset with add-one prior applied): A 0.321 C 0.18 G 0.186 T 0.313 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ACTGATAA MEME-1 width = 8 sites = 71 llr = 589 E-value = 5.7e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTGATAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 81::a:aa pos.-specific C :7:::::: probability G 21:a:::: matrix T :1a::a:: bits 2.5 2.2 * 2.0 * 1.7 *** * Relative 1.5 ****** Entropy 1.2 ****** (12.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACTGATAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGATAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:12400172-12400252 40 3.48e-05 AGAACCCCCT ACTGATAA GCAAATGATA chrX:4698467-4698547 34 3.48e-05 TTGTCTAGCT ACTGATAA GCAACTAGAT chrII:5751523-5751603 63 3.48e-05 TGAAAATGGC ACTGATAA GATGACAAGT chrIV:6802255-6802335 68 3.48e-05 TTTTTTGAAA ACTGATAA TGTGT chrI:5587638-5587718 36 3.48e-05 CTGATAAGCG ACTGATAA GCATCCAATT chrII:10594933-10595013 3 3.48e-05 TA ACTGATAA CGTTTGATGC chrX:13685868-13685948 62 3.48e-05 CACAGGTGAA ACTGATAA AAAGGCCGGA chrIII:3253883-3253963 21 3.48e-05 CGAACCACAA ACTGATAA GCTATCAGTA chrIV:5350945-5351025 39 3.48e-05 AATAATTGAA ACTGATAA GAAATTATGG chrI:5388629-5388709 52 3.48e-05 CATGTTGATT ACTGATAA CTTCTATAAG chrX:6427321-6427401 26 3.48e-05 GTAAACTTTC ACTGATAA ACTATGCAGA chrI:5408479-5408559 72 3.48e-05 ATGGTAGAAA ACTGATAA A chrII:4966749-4966829 49 3.48e-05 GCTTTACTCC ACTGATAA TGAGATATCA chrX:10477782-10477862 62 3.48e-05 GTGCATAACT ACTGATAA CAGATCGAAT chrII:4770029-4770109 5 3.48e-05 GTGT ACTGATAA CCAATTTTTC chrX:5468025-5468105 1 3.48e-05 . ACTGATAA GACTTTTTGA chrII:12425954-12426034 10 3.48e-05 TGTGGTCTC ACTGATAA GGGTACAGTG chrII:13079024-13079104 30 3.48e-05 ACTTTTGCCT ACTGATAA GGAAGTGGCG chrIV:17171938-17172018 64 3.48e-05 TGGAAGGAAT ACTGATAA TGATAATGA chrIV:8151922-8152002 73 3.48e-05 AGAAATTGTG ACTGATAA chrX:9858242-9858322 28 3.48e-05 AGCTATTTTT ACTGATAA GCTACTCGTC chrV:2327316-2327396 17 3.48e-05 ACCACAAAGT ACTGATAA GAAGAGTGAT chrI:10586825-10586905 5 3.48e-05 AAAA ACTGATAA GAAGGAGAGC chrX:2695393-2695473 18 3.48e-05 ATGTCAGAAT ACTGATAA CTGTGAAGAG chrX:9415909-9415989 60 3.48e-05 GAAGACACAT ACTGATAA GAAATGAAGA chrIII:5291463-5291543 44 3.48e-05 ACTGTGATAT ACTGATAA GGAACTCTCT chrX:6530768-6530848 2 3.48e-05 A ACTGATAA AAGAACGGTT chrIV:13327228-13327308 28 3.48e-05 AATATTTGAC ACTGATAA TGTCAAACGG chrIV:4482707-4482787 54 3.48e-05 TGCACACAAA ACTGATAA ACCCCCGACG chrV:13530861-13530941 58 3.48e-05 ACACAATTAA ACTGATAA GAAAAATGAA chrIV:5666318-5666398 43 3.48e-05 AAGCGAGCTT ACTGATAA AGCCCAAAAA chrIV:2798526-2798606 20 3.48e-05 AATAGAAATA ACTGATAA GAATATGGTT chrX:9364210-9364290 2 5.50e-05 C GCTGATAA ACGGATTTTG chrIII:154334-154414 40 5.50e-05 CACTCTATCA GCTGATAA CCCGTTCTTC chrIII:14844-14924 12 5.50e-05 GAGTAGTGGA GCTGATAA CGATTTTCTC chrI:5431432-5431512 47 5.50e-05 GAATCTTGTA GCTGATAA GATACTGCAC chrI:1919366-1919446 43 5.50e-05 TAAATTCTGT GCTGATAA TGATAATTTG chrV:13745041-13745121 31 5.50e-05 AGCAGAACAA GCTGATAA GGAAACACGG chrIII:8733851-8733931 58 5.50e-05 GACGATAGCT GCTGATAA GAAATGAAAA chrIV:13728011-13728091 48 5.50e-05 TGGACTTTAT GCTGATAA GAGGAAAAAG chrII:12980385-12980465 19 1.16e-04 CTTATCACCT ATTGATAA GGATAAAATA chrV:10693894-10693974 4 1.16e-04 AAA ATTGATAA AACTTAAAAG chrII:3953075-3953155 68 1.16e-04 ATAAAAGAAC ATTGATAA TAATG chrX:12197504-12197584 45 1.16e-04 CTTTCATTCA ATTGATAA AACTGACATC chrV:16075454-16075534 22 1.16e-04 TATGAACATT ATTGATAA GTGGAAGTGG chrIV:4821976-4822056 69 1.16e-04 TATTACCTTG ATTGATAA AATA chrX:8428515-8428595 19 1.16e-04 TACAACTGAC ATTGATAA GAGAGAGCAT chrX:8932550-8932630 16 1.16e-04 TTGGCAGTTC ATTGATAA GATAAAATGC chrX:8720028-8720108 71 1.16e-04 TTTTTATGGT ATTGATAA GC chrIV:4821153-4821233 29 2.14e-04 AGCTTGAACT AGTGATAA GCGGAGGTTT chrIV:10059375-10059455 63 2.14e-04 TACACGTGGC AATGATAA CAACTTATCT chrIV:6432513-6432593 63 2.14e-04 CAAAAGAGAG AATGATAA GAGGATGATA chrIV:6093634-6093714 43 2.14e-04 TCAGTTGGTG AGTGATAA GAGCGAGACA chrX:3829785-3829865 73 2.14e-04 GTTCATCCTC AATGATAA chrV:10280244-10280324 58 2.14e-04 CTGCCGGCAA AATGATAA CAGATGATAA chrI:9401858-9401938 44 2.14e-04 AAAAAAACAG AATGATAA ACAAGCGAAG chrV:9791529-9791609 32 2.14e-04 GCGAAACTGT AATGATAA CTGATCGTAC chrIV:12199865-12199945 53 2.14e-04 TGGCGACAAA AATGATAA GCTTGAATCA chrII:9291786-9291866 48 2.34e-04 CTTATCGGCA ACTGATGA TTGGTGATAA chrIII:10196960-10197040 57 2.34e-04 CTTACACGTC ACTGATGA TAAAACGTTA chrIV:6185732-6185812 60 2.34e-04 ACTCAAAAAC ACTGATGA CGATATGACA chrX:13767412-13767492 36 3.05e-04 TTCAAACATT ACAGATAA GACGCTGATA chrX:8719003-8719083 61 3.05e-04 TGGCATTTCG ACAGATAA GGACACATGT chrX:6674483-6674563 63 3.05e-04 TTTTAAACTT ACAGATAA CGATCATTTT chrI:10382050-10382130 3 3.05e-04 CT GTTGATAA GAGTGACGGC chrIV:9401912-9401992 43 3.39e-04 CCACCAATTT TCTGATAA AAACGTTTTC chrIII:3370180-3370260 70 3.39e-04 AAAAAGTTAC TCTGATAA GAT chrIII:7758730-7758810 5 3.72e-04 TTTG ACTCATAA AATGTGATTT chrIII:6088111-6088191 49 3.72e-04 ATCTTATCTC ACTCATAA GTGTTTTCTT chrII:5557304-5557384 18 4.29e-04 TTGTCTTTTA GGTGATAA GAGGTTCAGG chrIII:13626882-13626962 55 4.29e-04 ACGGGGTTCA GGTGATAA GGCTTTTTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGATAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:12400172-12400252 3.5e-05 39_[+1]_33 chrX:4698467-4698547 3.5e-05 33_[+1]_39 chrII:5751523-5751603 3.5e-05 62_[+1]_10 chrIV:6802255-6802335 3.5e-05 67_[+1]_5 chrI:5587638-5587718 3.5e-05 35_[+1]_37 chrII:10594933-10595013 3.5e-05 2_[+1]_70 chrX:13685868-13685948 3.5e-05 61_[+1]_11 chrIII:3253883-3253963 3.5e-05 20_[+1]_52 chrIV:5350945-5351025 3.5e-05 38_[+1]_34 chrI:5388629-5388709 3.5e-05 51_[+1]_21 chrX:6427321-6427401 3.5e-05 25_[+1]_47 chrI:5408479-5408559 3.5e-05 71_[+1]_1 chrII:4966749-4966829 3.5e-05 48_[+1]_24 chrX:10477782-10477862 3.5e-05 61_[+1]_11 chrII:4770029-4770109 3.5e-05 4_[+1]_68 chrX:5468025-5468105 3.5e-05 [+1]_72 chrII:12425954-12426034 3.5e-05 9_[+1]_63 chrII:13079024-13079104 3.5e-05 29_[+1]_43 chrIV:17171938-17172018 3.5e-05 63_[+1]_9 chrIV:8151922-8152002 3.5e-05 72_[+1] chrX:9858242-9858322 3.5e-05 27_[+1]_45 chrV:2327316-2327396 3.5e-05 16_[+1]_56 chrI:10586825-10586905 3.5e-05 4_[+1]_68 chrX:2695393-2695473 3.5e-05 17_[+1]_55 chrX:9415909-9415989 3.5e-05 59_[+1]_13 chrIII:5291463-5291543 3.5e-05 43_[+1]_29 chrX:6530768-6530848 3.5e-05 1_[+1]_71 chrIV:13327228-13327308 3.5e-05 27_[+1]_45 chrIV:4482707-4482787 3.5e-05 53_[+1]_19 chrV:13530861-13530941 3.5e-05 57_[+1]_15 chrIV:5666318-5666398 3.5e-05 42_[+1]_30 chrIV:2798526-2798606 3.5e-05 19_[+1]_53 chrX:9364210-9364290 5.5e-05 1_[+1]_71 chrIII:154334-154414 5.5e-05 39_[+1]_33 chrIII:14844-14924 5.5e-05 11_[+1]_61 chrI:5431432-5431512 5.5e-05 46_[+1]_26 chrI:1919366-1919446 5.5e-05 42_[+1]_30 chrV:13745041-13745121 5.5e-05 30_[+1]_42 chrIII:8733851-8733931 5.5e-05 57_[+1]_15 chrIV:13728011-13728091 5.5e-05 47_[+1]_25 chrII:12980385-12980465 0.00012 18_[+1]_54 chrV:10693894-10693974 0.00012 3_[+1]_69 chrII:3953075-3953155 0.00012 67_[+1]_5 chrX:12197504-12197584 0.00012 44_[+1]_28 chrV:16075454-16075534 0.00012 21_[+1]_51 chrIV:4821976-4822056 0.00012 68_[+1]_4 chrX:8428515-8428595 0.00012 18_[+1]_54 chrX:8932550-8932630 0.00012 15_[+1]_57 chrX:8720028-8720108 0.00012 70_[+1]_2 chrIV:4821153-4821233 0.00021 28_[+1]_44 chrIV:10059375-10059455 0.00021 62_[+1]_10 chrIV:6432513-6432593 0.00021 62_[+1]_10 chrIV:6093634-6093714 0.00021 42_[+1]_30 chrX:3829785-3829865 0.00021 72_[+1] chrV:10280244-10280324 0.00021 57_[+1]_15 chrI:9401858-9401938 0.00021 43_[+1]_29 chrV:9791529-9791609 0.00021 31_[+1]_41 chrIV:12199865-12199945 0.00021 52_[+1]_20 chrII:9291786-9291866 0.00023 47_[+1]_25 chrIII:10196960-10197040 0.00023 56_[+1]_16 chrIV:6185732-6185812 0.00023 59_[+1]_13 chrX:13767412-13767492 0.0003 35_[+1]_37 chrX:8719003-8719083 0.0003 60_[+1]_12 chrX:6674483-6674563 0.0003 62_[+1]_10 chrI:10382050-10382130 0.0003 2_[+1]_70 chrIV:9401912-9401992 0.00034 42_[+1]_30 chrIII:3370180-3370260 0.00034 69_[+1]_3 chrIII:7758730-7758810 0.00037 4_[+1]_68 chrIII:6088111-6088191 0.00037 48_[+1]_24 chrII:5557304-5557384 0.00043 17_[+1]_55 chrIII:13626882-13626962 0.00043 54_[+1]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGATAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTGATAA width=8 seqs=71 chrIV:12400172-12400252 ( 40) ACTGATAA 1 chrX:4698467-4698547 ( 34) ACTGATAA 1 chrII:5751523-5751603 ( 63) ACTGATAA 1 chrIV:6802255-6802335 ( 68) ACTGATAA 1 chrI:5587638-5587718 ( 36) ACTGATAA 1 chrII:10594933-10595013 ( 3) ACTGATAA 1 chrX:13685868-13685948 ( 62) ACTGATAA 1 chrIII:3253883-3253963 ( 21) ACTGATAA 1 chrIV:5350945-5351025 ( 39) ACTGATAA 1 chrI:5388629-5388709 ( 52) ACTGATAA 1 chrX:6427321-6427401 ( 26) ACTGATAA 1 chrI:5408479-5408559 ( 72) ACTGATAA 1 chrII:4966749-4966829 ( 49) ACTGATAA 1 chrX:10477782-10477862 ( 62) ACTGATAA 1 chrII:4770029-4770109 ( 5) ACTGATAA 1 chrX:5468025-5468105 ( 1) ACTGATAA 1 chrII:12425954-12426034 ( 10) ACTGATAA 1 chrII:13079024-13079104 ( 30) ACTGATAA 1 chrIV:17171938-17172018 ( 64) ACTGATAA 1 chrIV:8151922-8152002 ( 73) ACTGATAA 1 chrX:9858242-9858322 ( 28) ACTGATAA 1 chrV:2327316-2327396 ( 17) ACTGATAA 1 chrI:10586825-10586905 ( 5) ACTGATAA 1 chrX:2695393-2695473 ( 18) ACTGATAA 1 chrX:9415909-9415989 ( 60) ACTGATAA 1 chrIII:5291463-5291543 ( 44) ACTGATAA 1 chrX:6530768-6530848 ( 2) ACTGATAA 1 chrIV:13327228-13327308 ( 28) ACTGATAA 1 chrIV:4482707-4482787 ( 54) ACTGATAA 1 chrV:13530861-13530941 ( 58) ACTGATAA 1 chrIV:5666318-5666398 ( 43) ACTGATAA 1 chrIV:2798526-2798606 ( 20) ACTGATAA 1 chrX:9364210-9364290 ( 2) GCTGATAA 1 chrIII:154334-154414 ( 40) GCTGATAA 1 chrIII:14844-14924 ( 12) GCTGATAA 1 chrI:5431432-5431512 ( 47) GCTGATAA 1 chrI:1919366-1919446 ( 43) GCTGATAA 1 chrV:13745041-13745121 ( 31) GCTGATAA 1 chrIII:8733851-8733931 ( 58) GCTGATAA 1 chrIV:13728011-13728091 ( 48) GCTGATAA 1 chrII:12980385-12980465 ( 19) ATTGATAA 1 chrV:10693894-10693974 ( 4) ATTGATAA 1 chrII:3953075-3953155 ( 68) ATTGATAA 1 chrX:12197504-12197584 ( 45) ATTGATAA 1 chrV:16075454-16075534 ( 22) ATTGATAA 1 chrIV:4821976-4822056 ( 69) ATTGATAA 1 chrX:8428515-8428595 ( 19) ATTGATAA 1 chrX:8932550-8932630 ( 16) ATTGATAA 1 chrX:8720028-8720108 ( 71) ATTGATAA 1 chrIV:4821153-4821233 ( 29) AGTGATAA 1 chrIV:10059375-10059455 ( 63) AATGATAA 1 chrIV:6432513-6432593 ( 63) AATGATAA 1 chrIV:6093634-6093714 ( 43) AGTGATAA 1 chrX:3829785-3829865 ( 73) AATGATAA 1 chrV:10280244-10280324 ( 58) AATGATAA 1 chrI:9401858-9401938 ( 44) AATGATAA 1 chrV:9791529-9791609 ( 32) AATGATAA 1 chrIV:12199865-12199945 ( 53) AATGATAA 1 chrII:9291786-9291866 ( 48) ACTGATGA 1 chrIII:10196960-10197040 ( 57) ACTGATGA 1 chrIV:6185732-6185812 ( 60) ACTGATGA 1 chrX:13767412-13767492 ( 36) ACAGATAA 1 chrX:8719003-8719083 ( 61) ACAGATAA 1 chrX:6674483-6674563 ( 63) ACAGATAA 1 chrI:10382050-10382130 ( 3) GTTGATAA 1 chrIV:9401912-9401992 ( 43) TCTGATAA 1 chrIII:3370180-3370260 ( 70) TCTGATAA 1 chrIII:7758730-7758810 ( 5) ACTCATAA 1 chrIII:6088111-6088191 ( 49) ACTCATAA 1 chrII:5557304-5557384 ( 18) GGTGATAA 1 chrIII:13626882-13626962 ( 55) GGTGATAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGATAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.83776 E= 5.7e-040 135 -1279 -27 -347 -170 197 -173 -115 -292 -1279 -1279 161 -1279 -267 238 -1279 164 -1279 -1279 -1279 -1279 -1279 -1279 168 158 -1279 -214 -1279 164 -1279 -1279 -1279 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGATAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 71 E= 5.7e-040 0.816901 0.000000 0.154930 0.028169 0.098592 0.704225 0.056338 0.140845 0.042254 0.000000 0.000000 0.957746 0.000000 0.028169 0.971831 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.957746 0.000000 0.042254 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGATAA MEME-1 regular expression -------------------------------------------------------------------------------- ACTGATAA -------------------------------------------------------------------------------- Time 9.58 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTTATCA MEME-2 width = 8 sites = 75 llr = 589 E-value = 3.1e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::a::8 pos.-specific C 26::::a: probability G 12:::::1 matrix T 61aa:a:1 bits 2.5 * 2.2 * 2.0 * 1.7 **** Relative 1.5 ***** Entropy 1.2 ***** (11.3 bits) 1.0 ****** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTTATCA consensus CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:12980385-12980465 8 3.20e-05 TTGTTCT TCTTATCA CCTATTGATA chrII:8484737-8484817 67 3.20e-05 CTTGTGAGTT TCTTATCA TCTCAT chrV:10750796-10750876 27 3.20e-05 AGCTCTTTTC TCTTATCA GACGGAAAGG chrI:7174279-7174359 34 3.20e-05 CATTTTTCCA TCTTATCA CCAAACTTGT chrII:9740689-9740769 11 3.20e-05 TTTGATAATT TCTTATCA GTTGATTACA chrII:5561552-5561632 58 3.20e-05 TTGTCTCTCC TCTTATCA CTAGACACTT chrIII:9714893-9714973 1 3.20e-05 . TCTTATCA CAAGACGAAT chrIV:10059375-10059455 7 3.20e-05 ACGTTT TCTTATCA ATATTTATCT chrIV:10236264-10236344 23 3.20e-05 ACTTCCACTT TCTTATCA ATTTTCAAGC chrV:13377268-13377348 23 3.20e-05 TATCAGCTTT TCTTATCA GTTGGAGTTT chrIII:1002661-1002741 30 3.20e-05 AAACTTGACG TCTTATCA GTGATTCTGA chrII:4770029-4770109 47 3.20e-05 GATTGACAGC TCTTATCA GGGAGGGTGT chrIII:10822693-10822773 70 3.20e-05 AGTGTGAAAT TCTTATCA TAG chrIII:6088111-6088191 25 3.20e-05 GGTACACATT TCTTATCA GTAATTATCT chrX:13415869-13415949 41 3.20e-05 AGTATCACTA TCTTATCA ACTCAGTCCT chrV:2324452-2324532 2 3.20e-05 T TCTTATCA GTACTTTGTG chrIV:13728011-13728091 68 3.20e-05 GGAAAAAGTC TCTTATCA GTTGT chrII:12823604-12823684 43 3.20e-05 AACATTTTGT TCTTATCA CTCATCATCC chrIV:8952359-8952439 51 3.20e-05 ATCATTCATT TCTTATCA GTAGTTTCAG chrX:13060165-13060245 37 5.05e-05 AACAACAATT CCTTATCA TTCTACACTG chrII:4604276-4604356 3 5.05e-05 AA CCTTATCA ATAGAAATGT chrIII:7758730-7758810 65 5.05e-05 CACCGTCCAT CCTTATCA ATGGCTCT chrI:12184997-12185077 37 5.05e-05 AGCACTTTCA CCTTATCA GTAGATCATT chrX:4974634-4974714 32 5.05e-05 TGTCAATCAA CCTTATCA AAAGCACATT chrIV:8450702-8450782 32 5.05e-05 TACTATATCA CCTTATCA TCATTACGTC chrI:12949897-12949977 63 5.05e-05 TTGATTTGAA CCTTATCA ACAGTAAAAT chrX:8567369-8567449 1 5.05e-05 . CCTTATCA GTTAAAGAAG chrI:14051961-14052041 43 5.05e-05 CTTTTCTCAT CCTTATCA CCACTTAATT chrIV:7180498-7180578 40 8.36e-05 GACGTCCATT TGTTATCA TTACAATTAT chrI:10532458-10532538 8 8.36e-05 GACACTT TGTTATCA TTTGTCATTT chrII:12518145-12518225 13 8.36e-05 CTTTCCAACT TGTTATCA CTAGTTTTAT chrV:6399111-6399191 66 8.36e-05 ATTCCATTAT TGTTATCA GTTTGAC chrX:17064986-17065066 63 8.36e-05 AAGAATTTTT TGTTATCA GTAAAATTTT chrIV:11289120-11289200 21 8.36e-05 CCCATCAAAA TGTTATCA ATTTATCACT chrX:2320699-2320779 24 8.36e-05 TGAGCGTTTT TGTTATCA GGGAGAACTA chrII:8739148-8739228 59 8.36e-05 ATAAAATAAA TGTTATCA AAATGGGAGT chrX:3576418-3576498 62 1.21e-04 TCTCTTAATT TCTTATCG CTTCGTTACA chrX:12780798-12780878 73 1.21e-04 GACACTGTTA TCTTATCG chrIII:11087589-11087669 44 1.21e-04 CGGCCGCCAT TCTTATCG CCATTTCTTT chrI:5587638-5587718 59 1.21e-04 CAATTTTCCT GCTTATCA ATCAAATACC chrV:6489052-6489132 27 1.21e-04 TTATTCAAAC TCTTATCG ATATTTCTAT chrX:16679268-16679348 51 1.21e-04 TTTTTTTAAT GCTTATCA GTGTTAAATG chrV:12937231-12937311 24 1.21e-04 CTGAAATTCT TCTTATCG TGAATGAACA chrII:9291786-9291866 37 1.21e-04 CATGCGCGAC TCTTATCG GCAACTGATG chrI:5207780-5207860 72 1.21e-04 CCTTTTGACA GCTTATCA C chrX:3842694-3842774 28 1.21e-04 AGCTTATCAC TCTTATCG CGAAGCTATT chrI:9428834-9428914 26 1.40e-04 TCGTTATCAT CGTTATCA TTCGAACCGT chrIII:154334-154414 12 1.40e-04 GACCCCGCAT CGTTATCA TATTACACAA chrX:3102380-3102460 31 1.40e-04 AAAGTGGAAA CGTTATCA GTCAATAAAC chrX:15494303-15494383 53 1.51e-04 TATCAGATAG CCTTATCG ACGTCTAGAA chrI:6418813-6418893 49 2.07e-04 CTATGTATTT TTTTATCA ATTTCCGAAT chrIII:3834987-3835067 56 2.07e-04 AGCCATCAGT TTTTATCA GTTTTATGAG chrII:2415619-2415699 24 2.07e-04 AGACGGTTTT TTTTATCA GTTTTTGATC chrII:5748550-5748630 63 2.07e-04 GAGTACGCTG TTTTATCA GTTCCAACCA chrIII:6872702-6872782 73 2.07e-04 TCCATTGATC TTTTATCA chrIV:6880580-6880660 44 2.77e-04 GTGGAGCCTT TGTTATCG GCACCAGTAA chrV:13986991-13987071 15 2.77e-04 CTTAAATTTA TCTTATCT TTTTATGTGT chrV:9202859-9202939 38 2.77e-04 CGGATTTGTC TCTTATCT TACAGTTTAC chrII:7166898-7166978 40 2.77e-04 TTTTTGACTT TCTTATCT TTTCACCAAT chrX:8428515-8428595 37 2.77e-04 GAGAGAGCAT GGTTATCA ATATCTTTCC chrV:1456781-1456861 56 2.77e-04 GTGGACGGCC GGTTATCA ATGGGCTCTA chrII:7815096-7815176 60 2.77e-04 CGACAAAAAT GGTTATCA AAAGGAGCTG chrII:9931622-9931702 61 3.20e-04 AAGTACATGG CTTTATCA TGTAATCACG chrI:10753133-10753213 46 3.20e-04 TGCCAGGCGT CTTTATCA ATTGCCTGCT chrII:9468556-9468636 10 3.49e-04 AAATACAAT CCTTATCT GCAACTAATT chrX:6517586-6517666 41 3.82e-04 AGAATTTTAG ACTTATCA ATGGCTTAAA chrV:5192623-5192703 26 3.82e-04 TCTGTCTTTA ACTTATCA GTGTATATAC chrX:8932550-8932630 38 4.01e-04 AAATGCACAG TCGTATCA TGTCACGGGA chrV:13891656-13891736 52 4.98e-04 CACCCCACTT GTTTATCA GATGTTTCAA chrIV:10881391-10881471 43 4.98e-04 AGCGAGATCA TGTTATCT CAGGTCATCG chrV:6476196-6476276 66 4.98e-04 CAACTCTTTG TTTTATCG AAAAAAG chrV:13530861-13530941 5 4.98e-04 ATAT GTTTATCA TTGGAGTTTT chrIV:6185732-6185812 30 4.98e-04 GCAGAAGCGC TGTTATCT TTTGAATTTT chrIII:7154653-7154733 6 5.39e-04 AAAGA CCGTATCA TATCTAAAAG chrII:13665408-13665488 32 6.10e-04 TACTATTATC AGTTATCA CCAAAAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:12980385-12980465 3.2e-05 7_[+2]_65 chrII:8484737-8484817 3.2e-05 66_[+2]_6 chrV:10750796-10750876 3.2e-05 26_[+2]_46 chrI:7174279-7174359 3.2e-05 33_[+2]_39 chrII:9740689-9740769 3.2e-05 10_[+2]_62 chrII:5561552-5561632 3.2e-05 57_[+2]_15 chrIII:9714893-9714973 3.2e-05 [+2]_72 chrIV:10059375-10059455 3.2e-05 6_[+2]_66 chrIV:10236264-10236344 3.2e-05 22_[+2]_50 chrV:13377268-13377348 3.2e-05 22_[+2]_50 chrIII:1002661-1002741 3.2e-05 29_[+2]_43 chrII:4770029-4770109 3.2e-05 46_[+2]_26 chrIII:10822693-10822773 3.2e-05 69_[+2]_3 chrIII:6088111-6088191 3.2e-05 24_[+2]_48 chrX:13415869-13415949 3.2e-05 40_[+2]_32 chrV:2324452-2324532 3.2e-05 1_[+2]_71 chrIV:13728011-13728091 3.2e-05 67_[+2]_5 chrII:12823604-12823684 3.2e-05 42_[+2]_30 chrIV:8952359-8952439 3.2e-05 50_[+2]_22 chrX:13060165-13060245 5e-05 36_[+2]_36 chrII:4604276-4604356 5e-05 2_[+2]_70 chrIII:7758730-7758810 5e-05 64_[+2]_8 chrI:12184997-12185077 5e-05 36_[+2]_36 chrX:4974634-4974714 5e-05 31_[+2]_41 chrIV:8450702-8450782 5e-05 31_[+2]_41 chrI:12949897-12949977 5e-05 62_[+2]_10 chrX:8567369-8567449 5e-05 [+2]_72 chrI:14051961-14052041 5e-05 42_[+2]_30 chrIV:7180498-7180578 8.4e-05 39_[+2]_33 chrI:10532458-10532538 8.4e-05 7_[+2]_65 chrII:12518145-12518225 8.4e-05 12_[+2]_60 chrV:6399111-6399191 8.4e-05 65_[+2]_7 chrX:17064986-17065066 8.4e-05 62_[+2]_10 chrIV:11289120-11289200 8.4e-05 20_[+2]_52 chrX:2320699-2320779 8.4e-05 23_[+2]_49 chrII:8739148-8739228 8.4e-05 58_[+2]_14 chrX:3576418-3576498 0.00012 61_[+2]_11 chrX:12780798-12780878 0.00012 72_[+2] chrIII:11087589-11087669 0.00012 43_[+2]_29 chrI:5587638-5587718 0.00012 58_[+2]_14 chrV:6489052-6489132 0.00012 26_[+2]_46 chrX:16679268-16679348 0.00012 50_[+2]_22 chrV:12937231-12937311 0.00012 23_[+2]_49 chrII:9291786-9291866 0.00012 36_[+2]_36 chrI:5207780-5207860 0.00012 71_[+2]_1 chrX:3842694-3842774 0.00012 27_[+2]_45 chrI:9428834-9428914 0.00014 25_[+2]_47 chrIII:154334-154414 0.00014 11_[+2]_61 chrX:3102380-3102460 0.00014 30_[+2]_42 chrX:15494303-15494383 0.00015 52_[+2]_20 chrI:6418813-6418893 0.00021 48_[+2]_24 chrIII:3834987-3835067 0.00021 55_[+2]_17 chrII:2415619-2415699 0.00021 23_[+2]_49 chrII:5748550-5748630 0.00021 62_[+2]_10 chrIII:6872702-6872782 0.00021 72_[+2] chrIV:6880580-6880660 0.00028 43_[+2]_29 chrV:13986991-13987071 0.00028 14_[+2]_58 chrV:9202859-9202939 0.00028 37_[+2]_35 chrII:7166898-7166978 0.00028 39_[+2]_33 chrX:8428515-8428595 0.00028 36_[+2]_36 chrV:1456781-1456861 0.00028 55_[+2]_17 chrII:7815096-7815176 0.00028 59_[+2]_13 chrII:9931622-9931702 0.00032 60_[+2]_12 chrI:10753133-10753213 0.00032 45_[+2]_27 chrII:9468556-9468636 0.00035 9_[+2]_63 chrX:6517586-6517666 0.00038 40_[+2]_32 chrV:5192623-5192703 0.00038 25_[+2]_47 chrX:8932550-8932630 0.0004 37_[+2]_35 chrV:13891656-13891736 0.0005 51_[+2]_21 chrIV:10881391-10881471 0.0005 42_[+2]_30 chrV:6476196-6476276 0.0005 65_[+2]_7 chrV:13530861-13530941 0.0005 4_[+2]_68 chrIV:6185732-6185812 0.0005 29_[+2]_43 chrIII:7154653-7154733 0.00054 5_[+2]_67 chrII:13665408-13665488 0.00061 31_[+2]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTTATCA width=8 seqs=75 chrII:12980385-12980465 ( 8) TCTTATCA 1 chrII:8484737-8484817 ( 67) TCTTATCA 1 chrV:10750796-10750876 ( 27) TCTTATCA 1 chrI:7174279-7174359 ( 34) TCTTATCA 1 chrII:9740689-9740769 ( 11) TCTTATCA 1 chrII:5561552-5561632 ( 58) TCTTATCA 1 chrIII:9714893-9714973 ( 1) TCTTATCA 1 chrIV:10059375-10059455 ( 7) TCTTATCA 1 chrIV:10236264-10236344 ( 23) TCTTATCA 1 chrV:13377268-13377348 ( 23) TCTTATCA 1 chrIII:1002661-1002741 ( 30) TCTTATCA 1 chrII:4770029-4770109 ( 47) TCTTATCA 1 chrIII:10822693-10822773 ( 70) TCTTATCA 1 chrIII:6088111-6088191 ( 25) TCTTATCA 1 chrX:13415869-13415949 ( 41) TCTTATCA 1 chrV:2324452-2324532 ( 2) TCTTATCA 1 chrIV:13728011-13728091 ( 68) TCTTATCA 1 chrII:12823604-12823684 ( 43) TCTTATCA 1 chrIV:8952359-8952439 ( 51) TCTTATCA 1 chrX:13060165-13060245 ( 37) CCTTATCA 1 chrII:4604276-4604356 ( 3) CCTTATCA 1 chrIII:7758730-7758810 ( 65) CCTTATCA 1 chrI:12184997-12185077 ( 37) CCTTATCA 1 chrX:4974634-4974714 ( 32) CCTTATCA 1 chrIV:8450702-8450782 ( 32) CCTTATCA 1 chrI:12949897-12949977 ( 63) CCTTATCA 1 chrX:8567369-8567449 ( 1) CCTTATCA 1 chrI:14051961-14052041 ( 43) CCTTATCA 1 chrIV:7180498-7180578 ( 40) TGTTATCA 1 chrI:10532458-10532538 ( 8) TGTTATCA 1 chrII:12518145-12518225 ( 13) TGTTATCA 1 chrV:6399111-6399191 ( 66) TGTTATCA 1 chrX:17064986-17065066 ( 63) TGTTATCA 1 chrIV:11289120-11289200 ( 21) TGTTATCA 1 chrX:2320699-2320779 ( 24) TGTTATCA 1 chrII:8739148-8739228 ( 59) TGTTATCA 1 chrX:3576418-3576498 ( 62) TCTTATCG 1 chrX:12780798-12780878 ( 73) TCTTATCG 1 chrIII:11087589-11087669 ( 44) TCTTATCG 1 chrI:5587638-5587718 ( 59) GCTTATCA 1 chrV:6489052-6489132 ( 27) TCTTATCG 1 chrX:16679268-16679348 ( 51) GCTTATCA 1 chrV:12937231-12937311 ( 24) TCTTATCG 1 chrII:9291786-9291866 ( 37) TCTTATCG 1 chrI:5207780-5207860 ( 72) GCTTATCA 1 chrX:3842694-3842774 ( 28) TCTTATCG 1 chrI:9428834-9428914 ( 26) CGTTATCA 1 chrIII:154334-154414 ( 12) CGTTATCA 1 chrX:3102380-3102460 ( 31) CGTTATCA 1 chrX:15494303-15494383 ( 53) CCTTATCG 1 chrI:6418813-6418893 ( 49) TTTTATCA 1 chrIII:3834987-3835067 ( 56) TTTTATCA 1 chrII:2415619-2415699 ( 24) TTTTATCA 1 chrII:5748550-5748630 ( 63) TTTTATCA 1 chrIII:6872702-6872782 ( 73) TTTTATCA 1 chrIV:6880580-6880660 ( 44) TGTTATCG 1 chrV:13986991-13987071 ( 15) TCTTATCT 1 chrV:9202859-9202939 ( 38) TCTTATCT 1 chrII:7166898-7166978 ( 40) TCTTATCT 1 chrX:8428515-8428595 ( 37) GGTTATCA 1 chrV:1456781-1456861 ( 56) GGTTATCA 1 chrII:7815096-7815176 ( 60) GGTTATCA 1 chrII:9931622-9931702 ( 61) CTTTATCA 1 chrI:10753133-10753213 ( 46) CTTTATCA 1 chrII:9468556-9468636 ( 10) CCTTATCT 1 chrX:6517586-6517666 ( 41) ACTTATCA 1 chrV:5192623-5192703 ( 26) ACTTATCA 1 chrX:8932550-8932630 ( 38) TCGTATCA 1 chrV:13891656-13891736 ( 52) GTTTATCA 1 chrIV:10881391-10881471 ( 43) TGTTATCT 1 chrV:6476196-6476276 ( 66) TTTTATCG 1 chrV:13530861-13530941 ( 5) GTTTATCA 1 chrIV:6185732-6185812 ( 30) TGTTATCT 1 chrIII:7154653-7154733 ( 6) CCGTATCA 1 chrII:13665408-13665488 ( 32) AGTTATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.3564 E= 3.1e-031 -300 33 -80 100 -1287 180 37 -123 -1287 -1287 -280 164 -1287 -1287 -1287 168 164 -1287 -1287 -1287 -1287 -1287 -1287 168 -1287 247 -1287 -1287 129 -1287 -48 -197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 3.1e-031 0.040000 0.226667 0.106667 0.626667 0.000000 0.626667 0.240000 0.133333 0.000000 0.000000 0.026667 0.973333 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.786667 0.000000 0.133333 0.080000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 regular expression -------------------------------------------------------------------------------- [TC][CG]TTATCA -------------------------------------------------------------------------------- Time 13.55 secs. ******************************************************************************** ******************************************************************************** MOTIF RTCACGTG MEME-3 width = 8 sites = 36 llr = 313 E-value = 1.3e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTCACGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5::a:32: pos.-specific C :2a:a::: probability G 42:::71a matrix T :6::::8: bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 *** * Relative 1.5 *** * Entropy 1.2 **** * (12.5 bits) 1.0 **** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATCACGTG consensus GG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTCACGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6169064-6169144 40 6.56e-06 ATCGAGATGC GTCACGTG CTGGTCAGCT chrIV:12842289-12842369 7 6.56e-06 GAAATG GTCACGTG TAATAGCCTC chrII:8074210-8074290 54 6.56e-06 CAATCAACAA GTCACGTG TCAAAATTAT chrIII:8733851-8733931 21 6.56e-06 CTACTTTTAT GTCACGTG GGGTCTGAAC chrV:18578426-18578506 63 1.79e-05 GCCTAAAATT ATCACGTG GCGCCTATTT chrX:15494303-15494383 10 1.79e-05 AGCAGCCAT ATCACGTG TTGACACATA chrV:8270055-8270135 47 1.79e-05 CATCTTGATC ATCACGTG CCCAATAGCC chrIII:5267695-5267775 35 1.79e-05 AGAAGATATA ATCACGTG TGTCAATCGA chrII:4943013-4943093 25 1.79e-05 TAAGACATAA ATCACGTG ATTCACAGCT chrX:5468025-5468105 39 2.18e-05 ACGTGCAAGT GGCACGTG CAGTCCGATA chrV:16075454-16075534 57 2.18e-05 TATTTTTTGT GGCACGTG ATTCACTAGT chrI:9401858-9401938 70 2.18e-05 AGTGAGAGAG GGCACGTG TTT chrIV:12199865-12199945 9 3.23e-05 TCAAAAGG AGCACGTG ATGGAGTCCC chrIV:9668236-9668316 71 3.88e-05 AGTTCACAAA ACCACGTG AC chrIV:14413557-14413637 18 3.88e-05 ATGGCGGGTT ACCACGTG ATTCGGGAAT chrIII:11026796-11026876 32 3.88e-05 GCCCGAGCCA ACCACGTG AGCTCCGCGA chrV:12638940-12639020 69 5.01e-05 TGTGGCACAA GTCACATG TTCA chrIV:13346227-13346307 22 5.01e-05 TAATGTTTGT GTCACATG ATTCATCCTC chrIV:2798526-2798606 55 5.01e-05 TACTGAATAT GTCACATG ACGCATCATA chrX:13415869-13415949 10 5.68e-05 ACGAAGTAG GTCACGAG CATCTTCCGA chrX:8932550-8932630 47 6.07e-05 GTCGTATCAT GTCACGGG AAACATGAGC chrV:16278091-16278171 48 8.02e-05 CAAAATGTGC ATCACATG TGTGAACGAC chrIV:10795835-10795915 48 8.02e-05 CACACTTTTC ATCACATG AATTATTGTT chrIV:10811001-10811081 26 8.02e-05 TTTCATAGGT ATCACATG ATAGCAACAT chrX:7316869-7316949 57 9.18e-05 ATATTTAGTG ATCACGAG GTCTTGTGTT chrV:10399487-10399567 9 9.18e-05 TCAAATTT ATCACGAG AATTTGGTTG chrII:9931622-9931702 73 9.18e-05 TTATCATGTA ATCACGAG chrX:6517586-6517666 25 9.18e-05 ATCGTAATCA ATCACGAG AATTTTAGAC chrIV:14561843-14561923 24 1.05e-04 AACTGATATT GGCACATG ACAAATTGAA chrX:9415909-9415989 38 1.05e-04 AAAGTTGTTG GGCACATG ATGTGAAGAC chrV:10802217-10802297 68 1.18e-04 GTCATAATCT GCCACATG ACTGT chrV:18782921-18783001 49 1.18e-04 CGCTGCTCCT GGCACGGG CTCGGAGAAC chrI:5388629-5388709 38 1.34e-04 ACTGGTAAAG AGCACATG TTGATTACTG chrX:8719003-8719083 25 1.65e-04 TATAGAACAT ACCACGAG GACACATAAA chrX:6607741-6607821 73 1.75e-04 TATCACTTCA CTCACGTG chrIII:13626882-13626962 42 1.75e-04 CGCAGACCTC ACCACGGG GTTCAGGTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTCACGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6169064-6169144 6.6e-06 39_[+3]_33 chrIV:12842289-12842369 6.6e-06 6_[+3]_66 chrII:8074210-8074290 6.6e-06 53_[+3]_19 chrIII:8733851-8733931 6.6e-06 20_[+3]_52 chrV:18578426-18578506 1.8e-05 62_[+3]_10 chrX:15494303-15494383 1.8e-05 9_[+3]_63 chrV:8270055-8270135 1.8e-05 46_[+3]_26 chrIII:5267695-5267775 1.8e-05 34_[+3]_38 chrII:4943013-4943093 1.8e-05 24_[+3]_48 chrX:5468025-5468105 2.2e-05 38_[+3]_34 chrV:16075454-16075534 2.2e-05 56_[+3]_16 chrI:9401858-9401938 2.2e-05 69_[+3]_3 chrIV:12199865-12199945 3.2e-05 8_[+3]_64 chrIV:9668236-9668316 3.9e-05 70_[+3]_2 chrIV:14413557-14413637 3.9e-05 17_[+3]_55 chrIII:11026796-11026876 3.9e-05 31_[+3]_41 chrV:12638940-12639020 5e-05 68_[+3]_4 chrIV:13346227-13346307 5e-05 21_[+3]_51 chrIV:2798526-2798606 5e-05 54_[+3]_18 chrX:13415869-13415949 5.7e-05 9_[+3]_63 chrX:8932550-8932630 6.1e-05 46_[+3]_26 chrV:16278091-16278171 8e-05 47_[+3]_25 chrIV:10795835-10795915 8e-05 47_[+3]_25 chrIV:10811001-10811081 8e-05 25_[+3]_47 chrX:7316869-7316949 9.2e-05 56_[+3]_16 chrV:10399487-10399567 9.2e-05 8_[+3]_64 chrII:9931622-9931702 9.2e-05 72_[+3] chrX:6517586-6517666 9.2e-05 24_[+3]_48 chrIV:14561843-14561923 0.00011 23_[+3]_49 chrX:9415909-9415989 0.00011 37_[+3]_35 chrV:10802217-10802297 0.00012 67_[+3]_5 chrV:18782921-18783001 0.00012 48_[+3]_24 chrI:5388629-5388709 0.00013 37_[+3]_35 chrX:8719003-8719083 0.00016 24_[+3]_48 chrX:6607741-6607821 0.00017 72_[+3] chrIII:13626882-13626962 0.00017 41_[+3]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTCACGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTCACGTG width=8 seqs=36 chrIII:6169064-6169144 ( 40) GTCACGTG 1 chrIV:12842289-12842369 ( 7) GTCACGTG 1 chrII:8074210-8074290 ( 54) GTCACGTG 1 chrIII:8733851-8733931 ( 21) GTCACGTG 1 chrV:18578426-18578506 ( 63) ATCACGTG 1 chrX:15494303-15494383 ( 10) ATCACGTG 1 chrV:8270055-8270135 ( 47) ATCACGTG 1 chrIII:5267695-5267775 ( 35) ATCACGTG 1 chrII:4943013-4943093 ( 25) ATCACGTG 1 chrX:5468025-5468105 ( 39) GGCACGTG 1 chrV:16075454-16075534 ( 57) GGCACGTG 1 chrI:9401858-9401938 ( 70) GGCACGTG 1 chrIV:12199865-12199945 ( 9) AGCACGTG 1 chrIV:9668236-9668316 ( 71) ACCACGTG 1 chrIV:14413557-14413637 ( 18) ACCACGTG 1 chrIII:11026796-11026876 ( 32) ACCACGTG 1 chrV:12638940-12639020 ( 69) GTCACATG 1 chrIV:13346227-13346307 ( 22) GTCACATG 1 chrIV:2798526-2798606 ( 55) GTCACATG 1 chrX:13415869-13415949 ( 10) GTCACGAG 1 chrX:8932550-8932630 ( 47) GTCACGGG 1 chrV:16278091-16278171 ( 48) ATCACATG 1 chrIV:10795835-10795915 ( 48) ATCACATG 1 chrIV:10811001-10811081 ( 26) ATCACATG 1 chrX:7316869-7316949 ( 57) ATCACGAG 1 chrV:10399487-10399567 ( 9) ATCACGAG 1 chrII:9931622-9931702 ( 73) ATCACGAG 1 chrX:6517586-6517666 ( 25) ATCACGAG 1 chrIV:14561843-14561923 ( 24) GGCACATG 1 chrX:9415909-9415989 ( 38) GGCACATG 1 chrV:10802217-10802297 ( 68) GCCACATG 1 chrV:18782921-18783001 ( 49) GGCACGGG 1 chrI:5388629-5388709 ( 38) AGCACATG 1 chrX:8719003-8719083 ( 25) ACCACGAG 1 chrX:6607741-6607821 ( 73) CTCACGTG 1 chrIII:13626882-13626962 ( 42) ACCACGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTCACGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.8321 E= 1.3e-008 72 -269 125 -1181 -1181 -11 25 97 -1181 247 -1181 -1181 164 -1181 -1181 -1181 -1181 247 -1181 -1181 -21 -1181 195 -1181 -94 -1181 -116 126 -1181 -1181 242 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTCACGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.3e-008 0.527778 0.027778 0.444444 0.000000 0.000000 0.166667 0.222222 0.611111 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.277778 0.000000 0.722222 0.000000 0.166667 0.000000 0.083333 0.750000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTCACGTG MEME-3 regular expression -------------------------------------------------------------------------------- [AG][TG]CAC[GA]TG -------------------------------------------------------------------------------- Time 17.12 secs. ******************************************************************************** ******************************************************************************** MOTIF AGWGASAG MEME-4 width = 8 sites = 31 llr = 254 E-value = 4.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGWGASAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 7:5:9:a: pos.-specific C :2:::3:: probability G :8:a15:a matrix T 3:5::2:: bits 2.5 * * 2.2 * * 2.0 * * 1.7 * * ** Relative 1.5 * * ** Entropy 1.2 * ** ** (11.8 bits) 1.0 * ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGAG consensus T T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGASAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:3548478-3548558 1 1.27e-05 . agagagag agaggattag chrII:3953075-3953155 31 1.27e-05 TGCgatagag agagagag aaagagagag chrII:7558195-7558275 67 1.27e-05 AAAGGAAGAG AGAGAGAG AAAGAT chrIV:6500974-6501054 21 1.27e-05 AACGAGAAAG AGAGAGAG ACGTACTCTC chrI:2761073-2761153 23 1.27e-05 AGACGCAGAG AGAGAGAG AACACGACGC chrIV:10796845-10796925 12 1.27e-05 TGAATCGATA AGAGAGAG ACTCTTTCGT chrIII:8326293-8326373 29 2.51e-05 ATTTTTGGTG AGTGAGAG GTATGATAAC chrI:9401858-9401938 60 2.51e-05 AAACAAGCGA AGTGAGAG AGGGCACGTG chrX:2841964-2842044 70 2.51e-05 aaaatcataa aGTGAGAG ATA chrV:10750796-10750876 11 3.74e-05 TAGGAGGTTT AGAGACAG CTCTTTTCTC chrIII:9035185-9035265 72 4.94e-05 CAGATGAAAA AGTGACAG T chrX:11481146-11481226 28 4.94e-05 AAGTGTCATA AGTGACAG GGGCGTTTTG chrX:6674483-6674563 18 4.94e-05 AACTCGGTAG AGTGACAG TCTATGATCG chrII:10594933-10595013 66 6.18e-05 GTGTAGATGG TGAGAGAG TGCAGAG chrIII:7154653-7154733 42 7.39e-05 ACGAAAAACA TGTGAGAG AATTAAAAAG chrV:8270055-8270135 23 9.75e-05 CTTCTCAACC TGTGACAG TACAAACATC chrV:13986991-13987071 69 9.75e-05 TCTAAATGAA TGTGACAG TTCT chrII:12425954-12426034 41 9.75e-05 CCCCCTCAAC TGTGACAG AGAAGACTAC chrX:12780798-12780878 7 1.10e-04 TAGATT ACAGAGAG GAGAGCCCAC chrIV:4821976-4822056 19 1.10e-04 GAGATAGGAT ACAGAGAG AAAAATGGGA chrI:4161221-4161301 21 1.64e-04 AAAGTGACTC AGTGATAG AGTGTGTGGG chrII:12518145-12518225 32 1.64e-04 TAGTTTTATG AGTGATAG TACATTTCTG chrI:10753133-10753213 5 1.88e-04 ACAT ACTGACAG TCTTTGATCA chrX:2754684-2754764 48 1.88e-04 TGGGAAAAAA ACTGACAG CTTTATTACT chrIV:9668236-9668316 55 2.07e-04 GAACTTTGGC TCAGAGAG TTCACAAAAC chrX:2320699-2320779 50 2.07e-04 TACAATTAAA TCAGAGAG TGAGATAGTG chrIII:9689547-9689627 59 2.26e-04 ATTTGTGGAG AGTGGGAG TGGTAGGTCA chrIV:5659600-5659680 11 2.47e-04 ACATTCTACA TGAGATAG TTGGGATTAA chrX:11408133-11408213 68 2.47e-04 ATTGAGAAAG TGAGATAG ATAAA chrX:4215695-4215775 2 2.47e-04 A TGAGATAG CAGTATTCTT chrIV:8450702-8450782 53 2.86e-04 TTACGTCGCC AGAGGCAG TTTTTGTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGASAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:3548478-3548558 1.3e-05 [+4]_72 chrII:3953075-3953155 1.3e-05 30_[+4]_42 chrII:7558195-7558275 1.3e-05 66_[+4]_6 chrIV:6500974-6501054 1.3e-05 20_[+4]_52 chrI:2761073-2761153 1.3e-05 22_[+4]_50 chrIV:10796845-10796925 1.3e-05 11_[+4]_61 chrIII:8326293-8326373 2.5e-05 28_[+4]_44 chrI:9401858-9401938 2.5e-05 59_[+4]_13 chrX:2841964-2842044 2.5e-05 69_[+4]_3 chrV:10750796-10750876 3.7e-05 10_[+4]_62 chrIII:9035185-9035265 4.9e-05 71_[+4]_1 chrX:11481146-11481226 4.9e-05 27_[+4]_45 chrX:6674483-6674563 4.9e-05 17_[+4]_55 chrII:10594933-10595013 6.2e-05 65_[+4]_7 chrIII:7154653-7154733 7.4e-05 41_[+4]_31 chrV:8270055-8270135 9.8e-05 22_[+4]_50 chrV:13986991-13987071 9.8e-05 68_[+4]_4 chrII:12425954-12426034 9.8e-05 40_[+4]_32 chrX:12780798-12780878 0.00011 6_[+4]_66 chrIV:4821976-4822056 0.00011 18_[+4]_54 chrI:4161221-4161301 0.00016 20_[+4]_52 chrII:12518145-12518225 0.00016 31_[+4]_41 chrI:10753133-10753213 0.00019 4_[+4]_68 chrX:2754684-2754764 0.00019 47_[+4]_25 chrIV:9668236-9668316 0.00021 54_[+4]_18 chrX:2320699-2320779 0.00021 49_[+4]_23 chrIII:9689547-9689627 0.00023 58_[+4]_14 chrIV:5659600-5659680 0.00025 10_[+4]_62 chrX:11408133-11408213 0.00025 67_[+4]_5 chrX:4215695-4215775 0.00025 1_[+4]_71 chrIV:8450702-8450782 0.00029 52_[+4]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGASAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGWGASAG width=8 seqs=31 chrIV:3548478-3548558 ( 1) AGAGAGAG 1 chrII:3953075-3953155 ( 31) AGAGAGAG 1 chrII:7558195-7558275 ( 67) AGAGAGAG 1 chrIV:6500974-6501054 ( 21) AGAGAGAG 1 chrI:2761073-2761153 ( 23) AGAGAGAG 1 chrIV:10796845-10796925 ( 12) AGAGAGAG 1 chrIII:8326293-8326373 ( 29) AGTGAGAG 1 chrI:9401858-9401938 ( 60) AGTGAGAG 1 chrX:2841964-2842044 ( 70) AGTGAGAG 1 chrV:10750796-10750876 ( 11) AGAGACAG 1 chrIII:9035185-9035265 ( 72) AGTGACAG 1 chrX:11481146-11481226 ( 28) AGTGACAG 1 chrX:6674483-6674563 ( 18) AGTGACAG 1 chrII:10594933-10595013 ( 66) TGAGAGAG 1 chrIII:7154653-7154733 ( 42) TGTGAGAG 1 chrV:8270055-8270135 ( 23) TGTGACAG 1 chrV:13986991-13987071 ( 69) TGTGACAG 1 chrII:12425954-12426034 ( 41) TGTGACAG 1 chrX:12780798-12780878 ( 7) ACAGAGAG 1 chrIV:4821976-4822056 ( 19) ACAGAGAG 1 chrI:4161221-4161301 ( 21) AGTGATAG 1 chrII:12518145-12518225 ( 32) AGTGATAG 1 chrI:10753133-10753213 ( 5) ACTGACAG 1 chrX:2754684-2754764 ( 48) ACTGACAG 1 chrIV:9668236-9668316 ( 55) TCAGAGAG 1 chrX:2320699-2320779 ( 50) TCAGAGAG 1 chrIII:9689547-9689627 ( 59) AGTGGGAG 1 chrIV:5659600-5659680 ( 11) TGAGATAG 1 chrX:11408133-11408213 ( 68) TGAGATAG 1 chrX:4215695-4215775 ( 2) TGAGATAG 1 chrIV:8450702-8450782 ( 53) AGAGGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGASAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4993 E= 4.2e+003 108 -1160 -1160 4 -1160 10 211 -1160 69 -1160 -1160 63 -1160 -1160 242 -1160 154 -1160 -153 -1160 -1160 84 147 -96 164 -1160 -1160 -1160 -1160 -1160 242 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGASAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 4.2e+003 0.677419 0.000000 0.000000 0.322581 0.000000 0.193548 0.806452 0.000000 0.516129 0.000000 0.000000 0.483871 0.000000 0.000000 1.000000 0.000000 0.935484 0.000000 0.064516 0.000000 0.000000 0.322581 0.516129 0.161290 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGASAG MEME-4 regular expression -------------------------------------------------------------------------------- [AT]G[AT]GA[GC]AG -------------------------------------------------------------------------------- Time 20.55 secs. ******************************************************************************** ******************************************************************************** MOTIF MAACCCCC MEME-5 width = 8 sites = 8 llr = 85 E-value = 4.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAACCCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 48a::::: pos.-specific C 53:aaaa9 probability G 1::::::1 matrix T :::::::: bits 2.5 **** 2.2 **** 2.0 ***** 1.7 ****** Relative 1.5 ****** Entropy 1.2 ****** (15.2 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAACCCCC consensus AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACCCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:19051539-19051619 16 3.50e-06 ACTCCGGCTC CAACCCCC CTCCTCCTTT chrIII:13732826-13732906 31 5.47e-06 CTCCGTCCCC CCACCCCC GCCATGCGAA chrIII:11026796-11026876 10 5.47e-06 CGAGCTTTT CCACCCCC AGCTGCCCGA chrX:6338616-6338696 27 1.17e-05 GTAGTGTCCC AAACCCCC CGATAAGATA chrIV:14561843-14561923 56 1.17e-05 CGTCAGCTTA AAACCCCC GTGTTGCTCA chrX:11992383-11992463 17 1.17e-05 GAAGACATAT AAACCCCC ATCGAAGGGC chrIV:12400172-12400252 31 1.53e-05 AACCTTGGGA GAACCCCC TACTGATAAG chrI:10382050-10382130 54 2.25e-05 GTACCTGGGA CAACCCCG TTTGGAACTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACCCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:19051539-19051619 3.5e-06 15_[+5]_57 chrIII:13732826-13732906 5.5e-06 30_[+5]_42 chrIII:11026796-11026876 5.5e-06 9_[+5]_63 chrX:6338616-6338696 1.2e-05 26_[+5]_46 chrIV:14561843-14561923 1.2e-05 55_[+5]_17 chrX:11992383-11992463 1.2e-05 16_[+5]_56 chrIV:12400172-12400252 1.5e-05 30_[+5]_42 chrI:10382050-10382130 2.2e-05 53_[+5]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACCCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAACCCCC width=8 seqs=8 chrV:19051539-19051619 ( 16) CAACCCCC 1 chrIII:13732826-13732906 ( 31) CCACCCCC 1 chrIII:11026796-11026876 ( 10) CCACCCCC 1 chrX:6338616-6338696 ( 27) AAACCCCC 1 chrIV:14561843-14561923 ( 56) AAACCCCC 1 chrX:11992383-11992463 ( 17) AAACCCCC 1 chrIV:12400172-12400252 ( 31) GAACCCCC 1 chrI:10382050-10382130 ( 54) CAACCCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACCCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.4773 E= 4.8e+003 22 147 -57 -965 122 47 -965 -965 164 -965 -965 -965 -965 247 -965 -965 -965 247 -965 -965 -965 247 -965 -965 -965 247 -965 -965 -965 228 -57 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACCCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.8e+003 0.375000 0.500000 0.125000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACCCCC MEME-5 regular expression -------------------------------------------------------------------------------- [CA][AC]ACCCCC -------------------------------------------------------------------------------- Time 23.95 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:6185732-6185812 1.38e-02 80 chrI:10382050-10382130 2.03e-03 53_[+5(2.25e-05)]_19 chrX:8720028-8720108 3.24e-02 80 chrIII:10196960-10197040 4.35e-01 80 chrX:6445397-6445477 4.44e-01 80 chrII:7815096-7815176 1.56e-01 80 chrIII:9689547-9689627 2.17e-01 80 chrX:8756111-8756191 9.62e-01 80 chrIV:10811001-10811081 3.43e-02 25_[+3(8.02e-05)]_47 chrV:5192623-5192703 1.26e-01 80 chrV:19051539-19051619 7.78e-03 15_[+5(3.50e-06)]_57 chrIV:2798526-2798606 3.96e-03 19_[+1(3.48e-05)]_27_[+3(5.01e-05)]_\ 18 chrIV:10796845-10796925 1.12e-02 11_[+4(1.27e-05)]_61 chrI:2761073-2761153 4.13e-02 18_[+4(1.27e-05)]_54 chrX:15408667-15408747 5.85e-01 80 chrIV:5666318-5666398 2.65e-03 42_[+1(3.48e-05)]_30 chrII:5203079-5203159 7.75e-01 80 chrX:3842694-3842774 1.76e-01 80 chrV:13530861-13530941 1.83e-02 57_[+1(3.48e-05)]_15 chrII:8739148-8739228 4.93e-02 58_[+2(8.36e-05)]_14 chrIV:8952359-8952439 3.24e-02 50_[+2(3.20e-05)]_22 chrIV:12199865-12199945 5.49e-03 8_[+3(3.23e-05)]_50_[+3(8.02e-05)]_\ 6 chrV:6476196-6476276 2.70e-01 80 chrX:2754684-2754764 4.32e-02 80 chrIV:4482707-4482787 1.01e-03 59_[+5(1.17e-05)]_13 chrX:6674483-6674563 1.97e-02 17_[+4(4.94e-05)]_55 chrIV:13327228-13327308 7.63e-02 27_[+1(3.48e-05)]_45 chrII:12823604-12823684 3.10e-02 42_[+2(3.20e-05)]_9_[+2(5.05e-05)]_\ 13 chrX:2320699-2320779 3.60e-02 23_[+2(8.36e-05)]_49 chrX:11481146-11481226 5.32e-02 27_[+4(4.94e-05)]_45 chrV:1456781-1456861 7.07e-02 80 chrIV:17174241-17174321 6.35e-01 80 chrIV:10881391-10881471 8.85e-02 80 chrX:8932550-8932630 1.76e-03 46_[+3(6.07e-05)]_26 chrIV:13728011-13728091 5.63e-03 47_[+1(5.50e-05)]_12_[+2(3.20e-05)]_\ 5 chrV:384653-384733 1.72e-01 80 chrX:6274435-6274515 3.59e-01 80 chrIII:9035185-9035265 1.41e-02 71_[+4(4.94e-05)]_1 chrV:9791529-9791609 8.53e-02 80 chrX:2107598-2107678 5.49e-01 80 chrX:8714064-8714144 3.80e-01 80 chrX:6530768-6530848 1.32e-02 1_[+1(3.48e-05)]_49_[+1(3.48e-05)]_\ 14 chrIII:8733851-8733931 2.12e-03 20_[+3(6.56e-06)]_29_[+1(5.50e-05)]_\ 15 chrX:8428515-8428595 1.69e-04 25_[+4(1.27e-05)]_47 chrII:8074210-8074290 7.83e-02 53_[+3(6.56e-06)]_19 chrIII:11881721-11881801 2.95e-01 80 chrX:2841964-2842044 3.37e-02 69_[+4(2.51e-05)]_3 chrX:4248609-4248689 5.68e-01 80 chrII:14043395-14043475 5.13e-01 80 chrIV:11289120-11289200 2.94e-02 20_[+2(8.36e-05)]_52 chrX:6517586-6517666 1.50e-02 24_[+3(9.18e-05)]_48 chrI:9401858-9401938 1.77e-04 59_[+4(2.51e-05)]_2_[+3(2.18e-05)]_\ 3 chrIII:5291463-5291543 8.66e-02 43_[+1(3.48e-05)]_29 chrX:3952867-3952947 5.89e-01 80 chrII:4943013-4943093 2.52e-02 24_[+3(1.79e-05)]_48 chrIV:10795835-10795915 1.05e-01 47_[+3(8.02e-05)]_25 chrV:10432756-10432836 1.54e-01 80 chrX:9415909-9415989 4.82e-03 59_[+1(3.48e-05)]_13 chrX:9850417-9850497 6.75e-01 80 chrI:14051961-14052041 1.66e-02 42_[+2(5.05e-05)]_30 chrV:2324452-2324532 1.76e-01 1_[+2(3.20e-05)]_71 chrIII:13626882-13626962 2.65e-02 80 chrI:6119664-6119744 7.18e-01 80 chrII:8226611-8226691 7.67e-01 80 chrX:2695393-2695473 6.20e-03 17_[+1(3.48e-05)]_55 chrII:9468556-9468636 1.73e-01 80 chrIV:4821976-4822056 1.22e-02 80 chrIII:13526404-13526484 3.92e-01 80 chrX:8567369-8567449 2.21e-02 [+2(5.05e-05)]_72 chrV:16075454-16075534 3.71e-03 56_[+3(2.18e-05)]_16 chrII:5557304-5557384 1.10e-01 80 chrI:10586825-10586905 7.09e-02 4_[+1(3.48e-05)]_68 chrI:7553042-7553122 1.69e-01 80 chrV:2327316-2327396 1.41e-02 16_[+1(3.48e-05)]_56 chrX:8719003-8719083 1.82e-02 80 chrIII:9582393-9582473 4.16e-01 80 chrV:10280244-10280324 3.88e-01 80 chrIII:6180450-6180530 8.11e-01 80 chrII:14616523-14616603 1.71e-01 80 chrIII:2870360-2870440 2.09e-01 80 chrX:9858242-9858322 6.51e-02 27_[+1(3.48e-05)]_45 chrX:17064986-17065066 1.89e-01 62_[+2(8.36e-05)]_10 chrV:13740053-13740133 9.28e-01 80 chrI:10753133-10753213 8.81e-03 80 chrX:13415869-13415949 4.66e-03 9_[+3(5.68e-05)]_23_[+2(3.20e-05)]_\ 32 chrIV:8151922-8152002 3.47e-02 72_[+1(3.48e-05)] chrIV:17171938-17172018 3.49e-02 63_[+1(3.48e-05)]_9 chrIII:8326293-8326373 1.29e-02 28_[+4(2.51e-05)]_44 chrIV:6500974-6501054 3.04e-02 18_[+4(1.27e-05)]_54 chrI:12949897-12949977 4.93e-02 62_[+2(5.05e-05)]_10 chrI:5207780-5207860 8.72e-02 80 chrIV:13057556-13057636 7.04e-01 80 chrX:4215695-4215775 3.78e-01 80 chrI:9386038-9386118 3.27e-02 80 chrII:13079024-13079104 4.05e-02 29_[+1(3.48e-05)]_43 chrIII:6872702-6872782 1.30e-01 80 chrIII:6088111-6088191 1.12e-02 24_[+2(3.20e-05)]_48 chrV:8905806-8905886 4.40e-01 80 chrV:5560034-5560114 1.99e-01 80 chrV:1176404-1176484 5.51e-02 80 chrII:7166898-7166978 3.24e-01 80 chrIII:10822693-10822773 7.81e-02 69_[+2(3.20e-05)]_3 chrX:651781-651861 8.22e-01 80 chrX:3829785-3829865 2.65e-02 80 chrII:12425954-12426034 4.65e-03 9_[+1(3.48e-05)]_23_[+4(9.75e-05)]_\ 32 chrX:5468025-5468105 1.58e-03 [+1(3.48e-05)]_30_[+3(2.18e-05)]_34 chrX:11408133-11408213 5.80e-02 80 chrIII:9857232-9857312 6.66e-01 80 chrIV:9802882-9802962 5.24e-01 80 chrX:10074368-10074448 7.71e-01 80 chrII:14811597-14811677 8.62e-01 80 chrIV:8450702-8450782 1.77e-03 31_[+2(5.05e-05)]_25_[+2(8.36e-05)]_\ 8 chrIV:6093634-6093714 4.83e-02 80 chrII:4770029-4770109 3.20e-04 4_[+1(3.48e-05)]_34_[+2(3.20e-05)]_\ 26 chrX:4974634-4974714 7.27e-02 31_[+2(5.05e-05)]_41 chrIII:1002661-1002741 3.91e-02 29_[+2(3.20e-05)]_43 chrX:3115917-3115997 1.22e-01 80 chrX:7725762-7725842 9.45e-01 80 chrIII:5267695-5267775 5.14e-03 34_[+3(1.79e-05)]_38 chrV:13745041-13745121 1.09e-01 30_[+1(5.50e-05)]_42 chrX:10477782-10477862 3.67e-02 61_[+1(3.48e-05)]_11 chrIV:6818543-6818623 1.92e-01 80 chrII:5281329-5281409 1.03e-01 80 chrIV:6576125-6576205 9.74e-02 [+4(1.27e-05)]_[+4(1.27e-05)]_\ [+4(1.27e-05)]_[+4(1.27e-05)]_[+4(1.27e-05)]_6_[+4(1.27e-05)]_2_\ [+4(3.74e-05)]_16 chrII:4966749-4966829 5.57e-03 48_[+1(3.48e-05)]_24 chrI:5408479-5408559 1.17e-01 71_[+1(3.48e-05)]_1 chrV:9202859-9202939 3.02e-01 80 chrII:9291786-9291866 3.68e-03 80 chrIII:3370180-3370260 1.30e-01 80 chrX:6427321-6427401 1.57e-01 25_[+1(3.48e-05)]_47 chrII:5748550-5748630 3.65e-01 80 chrII:9931622-9931702 2.63e-02 72_[+3(9.18e-05)] chrV:13377268-13377348 6.49e-03 22_[+2(3.20e-05)]_50 chrI:5388629-5388709 9.64e-03 51_[+1(3.48e-05)]_21 chrI:6988497-6988577 4.09e-01 80 chrIV:2711414-2711494 7.34e-01 80 chrV:6399111-6399191 1.97e-02 65_[+2(8.36e-05)]_7 chrV:16278091-16278171 2.52e-01 47_[+3(8.02e-05)]_25 chrIV:10236264-10236344 4.20e-02 22_[+2(3.20e-05)]_50 chrI:12184997-12185077 1.65e-01 36_[+2(5.05e-05)]_36 chrIV:5350945-5351025 3.38e-02 38_[+1(3.48e-05)]_34 chrIII:3253883-3253963 3.28e-02 20_[+1(3.48e-05)]_52 chrIV:8949209-8949289 8.94e-01 80 chrIV:6432513-6432593 7.08e-02 80 chrV:13891656-13891736 1.06e-02 80 chrX:11992383-11992463 7.84e-03 16_[+5(1.17e-05)]_56 chrX:8824635-8824715 8.43e-02 80 chrIII:7758730-7758810 1.60e-02 64_[+2(5.05e-05)]_8 chrII:7290122-7290202 7.66e-01 80 chrX:10916373-10916453 3.82e-01 80 chrIII:11026796-11026876 1.37e-03 9_[+5(5.47e-06)]_14_[+3(3.88e-05)]_\ 41 chrIV:10059375-10059455 1.10e-02 6_[+2(3.20e-05)]_66 chrX:3102380-3102460 3.06e-02 80 chrX:13685868-13685948 1.18e-02 61_[+1(3.48e-05)]_11 chrV:13986991-13987071 1.36e-02 68_[+4(9.75e-05)]_4 chrIV:14561843-14561923 9.71e-04 55_[+5(1.17e-05)]_17 chrV:18782921-18783001 1.42e-01 80 chrI:1919366-1919446 1.31e-01 42_[+1(5.50e-05)]_30 chrIII:9714893-9714973 6.36e-03 [+2(3.20e-05)]_72 chrV:4720127-4720207 3.12e-01 80 chrII:6026803-6026883 9.83e-01 80 chrV:13529306-13529386 2.96e-01 80 chrII:12518145-12518225 4.15e-03 12_[+2(8.36e-05)]_60 chrIV:5659600-5659680 1.76e-01 80 chrII:2805072-2805152 2.13e-01 80 chrIII:1602864-1602944 5.40e-01 80 chrII:10594933-10595013 6.46e-03 2_[+1(3.48e-05)]_55_[+4(6.18e-05)]_\ 7 chrI:10532458-10532538 5.94e-02 7_[+2(8.36e-05)]_65 chrIV:14413557-14413637 2.40e-02 17_[+3(3.88e-05)]_55 chrV:12937231-12937311 3.78e-02 80 chrII:13665408-13665488 1.07e-01 80 chrV:10399487-10399567 9.15e-02 8_[+3(9.18e-05)]_64 chrI:6416931-6417011 6.94e-01 80 chrI:5431432-5431512 3.80e-03 46_[+1(5.50e-05)]_26 chrII:4604276-4604356 3.03e-01 2_[+2(5.05e-05)]_70 chrII:2415619-2415699 2.93e-01 80 chrII:7558195-7558275 6.37e-02 62_[+4(1.27e-05)]_10 chrX:17502419-17502499 9.31e-01 80 chrIV:12842289-12842369 3.62e-02 6_[+3(6.56e-06)]_66 chrII:5561552-5561632 1.61e-02 57_[+2(3.20e-05)]_15 chrX:16679268-16679348 2.24e-01 80 chrIV:9668236-9668316 1.76e-03 70_[+3(3.88e-05)]_2 chrIV:7520445-7520525 2.26e-01 80 chrIII:1388521-1388601 6.65e-01 80 chrV:6489052-6489132 1.89e-01 80 chrV:20165979-20166059 2.63e-01 80 chrV:16043837-16043917 3.02e-01 80 chrI:5587638-5587718 7.23e-03 24_[+1(3.48e-05)]_3_[+1(3.48e-05)]_\ 37 chrIII:11087589-11087669 1.67e-01 80 chrIII:3834987-3835067 1.94e-01 80 chrIV:13346227-13346307 3.94e-02 21_[+3(5.01e-05)]_51 chrV:14852125-14852205 3.93e-01 80 chrX:6338616-6338696 1.46e-03 26_[+5(1.17e-05)]_46 chrV:8383821-8383901 8.90e-01 80 chrIV:6880580-6880660 9.39e-02 80 chrV:2875601-2875681 9.07e-01 80 chrX:12197504-12197584 1.75e-01 80 chrX:16677790-16677870 4.57e-01 80 chrX:6257083-6257163 7.78e-01 80 chrII:6701657-6701737 6.94e-01 80 chrI:4161221-4161301 1.50e-01 80 chrI:13381560-13381640 1.19e-01 27_[+4(1.27e-05)]_[+4(1.27e-05)]_\ [+4(1.27e-05)]_[+4(1.27e-05)]_[+4(1.27e-05)]_[+4(1.27e-05)]_5 chrX:17375993-17376073 6.52e-01 80 chrI:6418813-6418893 1.95e-01 80 chrX:7316869-7316949 1.75e-01 56_[+3(9.18e-05)]_16 chrIII:11822557-11822637 1.33e-01 80 chrX:12780798-12780878 3.27e-03 80 chrV:10936840-10936920 9.06e-01 80 chrX:1046593-1046673 5.24e-02 80 chrIII:14844-14924 1.30e-01 11_[+1(5.50e-05)]_61 chrX:5109299-5109379 6.80e-01 80 chrIV:9401912-9401992 6.98e-02 80 chrIII:6169064-6169144 1.30e-02 39_[+3(6.56e-06)]_33 chrX:13060165-13060245 1.44e-01 36_[+2(5.05e-05)]_36 chrII:9740689-9740769 1.23e-02 10_[+2(3.20e-05)]_62 chrV:16726117-16726197 1.07e-01 80 chrII:3953075-3953155 3.48e-03 26_[+4(1.27e-05)]_6_[+4(1.27e-05)]_\ 32 chrIV:6802255-6802335 8.98e-02 67_[+1(3.48e-05)]_5 chrIV:7180498-7180578 1.80e-01 39_[+2(8.36e-05)]_33 chrI:7174279-7174359 5.05e-02 33_[+2(3.20e-05)]_39 chrIII:7154653-7154733 1.89e-02 41_[+4(7.39e-05)]_31 chrIII:13732826-13732906 3.39e-02 30_[+5(5.47e-06)]_42 chrI:3113682-3113762 3.77e-01 80 chrV:10750796-10750876 2.48e-03 10_[+4(3.74e-05)]_8_[+2(3.20e-05)]_\ 46 chrII:5751523-5751603 2.31e-02 62_[+1(3.48e-05)]_10 chrII:8484737-8484817 4.53e-02 66_[+2(3.20e-05)]_6 chrV:15354846-15354926 8.10e-01 80 chrV:8270055-8270135 2.97e-03 22_[+4(9.75e-05)]_16_[+3(1.79e-05)]_\ 26 chrX:15494303-15494383 8.37e-05 9_[+3(1.79e-05)]_63 chrII:8567010-8567090 4.03e-01 80 chrX:4698467-4698547 3.20e-02 33_[+1(3.48e-05)]_39 chrIII:154334-154414 1.29e-03 39_[+1(5.50e-05)]_33 chrIII:8657117-8657197 3.34e-02 80 chrIV:3548478-3548558 1.25e-02 [+4(1.27e-05)]_44_[+4(2.51e-05)]_20 chrV:18578426-18578506 2.79e-03 62_[+3(1.79e-05)]_10 chrIII:12325425-12325505 4.85e-01 80 chrX:9364210-9364290 7.19e-02 1_[+1(5.50e-05)]_71 chrX:13767412-13767492 2.22e-01 80 chrX:3576418-3576498 3.12e-01 80 chrV:12638940-12639020 1.29e-01 68_[+3(5.01e-05)]_4 chrIV:4821153-4821233 1.91e-01 80 chrIII:2760903-2760983 3.88e-01 80 chrV:13012022-13012102 5.19e-01 80 chrX:6607741-6607821 6.55e-02 80 chrIII:9850167-9850247 4.33e-01 80 chrV:10693894-10693974 1.20e-01 80 chrV:10802217-10802297 7.33e-02 80 chrI:9428834-9428914 3.42e-01 80 chrIV:12400172-12400252 4.24e-04 14_[+1(5.50e-05)]_8_[+5(1.53e-05)]_\ 1_[+1(3.48e-05)]_33 chrII:12980385-12980465 3.34e-03 7_[+2(3.20e-05)]_65 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************