******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/duxl-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:1796214-1796294 1.0000 80 chrV:18737805-18737885 1.0000 80 chrX:2000614-2000694 1.0000 80 chrV:17315214-17315294 1.0000 80 chrX:1682725-1682805 1.0000 80 chrII:1736518-1736598 1.0000 80 chrII:3370216-3370296 1.0000 80 chrII:1848295-1848375 1.0000 80 chrX:1977867-1977947 1.0000 80 chrII:1892602-1892682 1.0000 80 chrX:1989735-1989815 1.0000 80 chrII:3423070-3423150 1.0000 80 chrII:2503846-2503926 1.0000 80 chrII:3616778-3616858 1.0000 80 chrV:3905985-3906065 1.0000 80 chrV:18782899-18782979 1.0000 80 chrV:20380510-20380590 1.0000 80 chrII:2708040-2708120 1.0000 80 chrX:1871140-1871220 1.0000 80 chrX:1938080-1938160 1.0000 80 chrV:17159375-17159455 1.0000 80 chrI:12173523-12173603 1.0000 80 chrX:14584500-14584580 1.0000 80 chrV:17258415-17258495 1.0000 80 chrIV:1904397-1904477 1.0000 80 chrII:3303761-3303841 1.0000 80 chrV:3841584-3841664 1.0000 80 chrII:10496367-10496447 1.0000 80 chrV:18776453-18776533 1.0000 80 chrII:2502755-2502835 1.0000 80 chrV:17538454-17538534 1.0000 80 chrX:1961031-1961111 1.0000 80 chrIV:8597635-8597715 1.0000 80 chrIII:10815453-10815533 1.0000 80 chrII:1683962-1684042 1.0000 80 chrX:1914446-1914526 1.0000 80 chrII:2734897-2734977 1.0000 80 chrX:5852250-5852330 1.0000 80 chrII:1949310-1949390 1.0000 80 chrII:3743853-3743933 1.0000 80 chrII:7775600-7775680 1.0000 80 chrV:3410232-3410312 1.0000 80 chrII:13636726-13636806 1.0000 80 chrII:1661582-1661662 1.0000 80 chrIV:15648391-15648471 1.0000 80 chrX:1489698-1489778 1.0000 80 chrII:1663692-1663772 1.0000 80 chrV:17345064-17345144 1.0000 80 chrII:3129162-3129242 1.0000 80 chrIII:3699446-3699526 1.0000 80 chrI:6498910-6498990 1.0000 80 chrII:3311413-3311493 1.0000 80 chrV:19767847-19767927 1.0000 80 chrIII:7812353-7812433 1.0000 80 chrX:2219197-2219277 1.0000 80 chrM:4363-4443 1.0000 80 chrII:10496907-10496987 1.0000 80 chrX:403134-403214 1.0000 80 chrII:7775019-7775099 1.0000 80 chrI:6497544-6497624 1.0000 80 chrV:12743841-12743921 1.0000 80 chrV:2826988-2827068 1.0000 80 chrI:10516807-10516887 1.0000 80 chrX:1405684-1405764 1.0000 80 chrX:6662117-6662197 1.0000 80 chrIII:4654108-4654188 1.0000 80 chrIII:4096513-4096593 1.0000 80 chrIII:7736170-7736250 1.0000 80 chrV:17542502-17542582 1.0000 80 chrV:14368897-14368977 1.0000 80 chrX:4526622-4526702 1.0000 80 chrII:7348215-7348295 1.0000 80 chrII:1851890-1851970 1.0000 80 chrII:2504583-2504663 1.0000 80 chrX:17214602-17214682 1.0000 80 chrI:2686367-2686447 1.0000 80 chrX:15778145-15778225 1.0000 80 chrII:8480574-8480654 1.0000 80 chrV:667659-667739 1.0000 80 chrV:4187039-4187119 1.0000 80 chrX:5348647-5348727 1.0000 80 chrX:10668011-10668091 1.0000 80 chrX:1939432-1939512 1.0000 80 chrV:10210226-10210306 1.0000 80 chrV:11820212-11820292 1.0000 80 chrV:4029792-4029872 1.0000 80 chrX:1961473-1961553 1.0000 80 chrIII:7977461-7977541 1.0000 80 chrIV:14094359-14094439 1.0000 80 chrX:1965000-1965080 1.0000 80 chrV:16640602-16640682 1.0000 80 chrX:13349930-13350010 1.0000 80 chrV:4688728-4688808 1.0000 80 chrIV:1891664-1891744 1.0000 80 chrIV:15559246-15559326 1.0000 80 chrX:4208673-4208753 1.0000 80 chrV:8039341-8039421 1.0000 80 chrIII:9626778-9626858 1.0000 80 chrIII:346185-346265 1.0000 80 chrV:18412501-18412581 1.0000 80 chrX:1492321-1492401 1.0000 80 chrX:1339034-1339114 1.0000 80 chrIII:2294890-2294970 1.0000 80 chrX:11059957-11060037 1.0000 80 chrII:8745051-8745131 1.0000 80 chrX:16695359-16695439 1.0000 80 chrIII:8833431-8833511 1.0000 80 chrI:6499799-6499879 1.0000 80 chrV:20383230-20383310 1.0000 80 chrV:18780182-18780262 1.0000 80 chrX:14137005-14137085 1.0000 80 chrX:6088847-6088927 1.0000 80 chrX:1011674-1011754 1.0000 80 chrI:2875099-2875179 1.0000 80 chrX:16930378-16930458 1.0000 80 chrIV:201092-201172 1.0000 80 chrII:11617400-11617480 1.0000 80 chrX:8386687-8386767 1.0000 80 chrV:725516-725596 1.0000 80 chrV:17317936-17318016 1.0000 80 chrIII:5875746-5875826 1.0000 80 chrV:13370400-13370480 1.0000 80 chrIV:8537744-8537824 1.0000 80 chrI:7017835-7017915 1.0000 80 chrII:1842997-1843077 1.0000 80 chrIII:13724617-13724697 1.0000 80 chrX:1445753-1445833 1.0000 80 chrX:3113518-3113598 1.0000 80 chrIII:5504921-5505001 1.0000 80 chrII:5619359-5619439 1.0000 80 chrV:6223756-6223836 1.0000 80 chrIV:7578245-7578325 1.0000 80 chrX:1371021-1371101 1.0000 80 chrV:12320600-12320680 1.0000 80 chrI:7018906-7018986 1.0000 80 chrV:17067846-17067926 1.0000 80 chrII:1820070-1820150 1.0000 80 chrI:9382488-9382568 1.0000 80 chrIII:344452-344532 1.0000 80 chrV:16645708-16645788 1.0000 80 chrV:6019221-6019301 1.0000 80 chrIII:1249327-1249407 1.0000 80 chrIII:7466133-7466213 1.0000 80 chrI:5416337-5416417 1.0000 80 chrX:10756343-10756423 1.0000 80 chrX:8945201-8945281 1.0000 80 chrII:1664409-1664489 1.0000 80 chrII:3000691-3000771 1.0000 80 chrV:16040632-16040712 1.0000 80 chrIV:7105261-7105341 1.0000 80 chrIII:2031370-2031450 1.0000 80 chrIII:9770104-9770184 1.0000 80 chrX:13730331-13730411 1.0000 80 chrV:19047083-19047163 1.0000 80 chrM:8669-8749 1.0000 80 chrV:6221379-6221459 1.0000 80 chrII:1519982-1520062 1.0000 80 chrX:11924325-11924405 1.0000 80 chrIV:16167480-16167560 1.0000 80 chrV:7434111-7434191 1.0000 80 chrM:5266-5346 1.0000 80 chrIV:8817354-8817434 1.0000 80 chrX:2144263-2144343 1.0000 80 chrX:12730229-12730309 1.0000 80 chrIII:9814122-9814202 1.0000 80 chrV:9338621-9338701 1.0000 80 chrI:7080573-7080653 1.0000 80 chrII:10499369-10499449 1.0000 80 chrII:4859122-4859202 1.0000 80 chrIV:5317334-5317414 1.0000 80 chrIV:13389398-13389478 1.0000 80 chrX:9090694-9090774 1.0000 80 chrII:3268024-3268104 1.0000 80 chrV:7437608-7437688 1.0000 80 chrII:8746662-8746742 1.0000 80 chrII:1239755-1239835 1.0000 80 chrIII:7737745-7737825 1.0000 80 chrM:1829-1909 1.0000 80 chrII:7810255-7810335 1.0000 80 chrX:1845607-1845687 1.0000 80 chrI:7029316-7029396 1.0000 80 chrIV:2765248-2765328 1.0000 80 chrX:6089994-6090074 1.0000 80 chrX:15146523-15146603 1.0000 80 chrV:18710100-18710180 1.0000 80 chrI:14646245-14646325 1.0000 80 chrI:5103289-5103369 1.0000 80 chrX:1798691-1798771 1.0000 80 chrIV:7344158-7344238 1.0000 80 chrII:13853081-13853161 1.0000 80 chrIII:10354933-10355013 1.0000 80 chrV:14028265-14028345 1.0000 80 chrX:17420036-17420116 1.0000 80 chrIV:11081502-11081582 1.0000 80 chrII:9211824-9211904 1.0000 80 chrIII:7370401-7370481 1.0000 80 chrX:4471731-4471811 1.0000 80 chrV:14009777-14009857 1.0000 80 chrV:11122569-11122649 1.0000 80 chrII:11731377-11731457 1.0000 80 chrI:6316784-6316864 1.0000 80 chrII:10559816-10559896 1.0000 80 chrX:13782241-13782321 1.0000 80 chrII:9886251-9886331 1.0000 80 chrX:16617810-16617890 1.0000 80 chrX:6794193-6794273 1.0000 80 chrII:1659867-1659947 1.0000 80 chrX:4453258-4453338 1.0000 80 chrI:13384665-13384745 1.0000 80 chrIV:4665421-4665501 1.0000 80 chrV:16780614-16780694 1.0000 80 chrII:10391960-10392040 1.0000 80 chrIII:7534926-7535006 1.0000 80 chrV:635800-635880 1.0000 80 chrV:17547261-17547341 1.0000 80 chrX:432371-432451 1.0000 80 chrX:7536687-7536767 1.0000 80 chrIV:294907-294987 1.0000 80 chrIII:10817866-10817946 1.0000 80 chrIII:11627964-11628044 1.0000 80 chrIII:2173037-2173117 1.0000 80 chrV:6051086-6051166 1.0000 80 chrIV:3234435-3234515 1.0000 80 chrIII:2433095-2433175 1.0000 80 chrIV:5375100-5375180 1.0000 80 chrIII:7792390-7792470 1.0000 80 chrII:5856309-5856389 1.0000 80 chrII:14605199-14605279 1.0000 80 chrX:7824980-7825060 1.0000 80 chrIII:8450749-8450829 1.0000 80 chrX:16619296-16619376 1.0000 80 chrIII:5196427-5196507 1.0000 80 chrIV:1892773-1892853 1.0000 80 chrX:1799295-1799375 1.0000 80 chrV:7775192-7775272 1.0000 80 chrIII:12876029-12876109 1.0000 80 chrV:13466443-13466523 1.0000 80 chrX:6253939-6254019 1.0000 80 chrIII:6373874-6373954 1.0000 80 chrII:1241064-1241144 1.0000 80 chrI:12534568-12534648 1.0000 80 chrIII:8794291-8794371 1.0000 80 chrIV:10387509-10387589 1.0000 80 chrII:5545622-5545702 1.0000 80 chrM:3307-3387 1.0000 80 chrI:3163801-3163881 1.0000 80 chrIV:2604153-2604233 1.0000 80 chrX:17545611-17545691 1.0000 80 chrIV:2230913-2230993 1.0000 80 chrX:7340467-7340547 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_duxl-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/duxl-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.286 C 0.211 G 0.222 T 0.281 Background letter frequencies (from file dataset with add-one prior applied): A 0.286 C 0.211 G 0.222 T 0.281 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTCTCTCW MEME-1 width = 8 sites = 29 llr = 254 E-value = 2.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTCTCW MEME-1 Description -------------------------------------------------------------------------------- Simplified A :2:::1:4 pos.-specific C a1a:8:9: probability G :::::::: matrix T :7:a2916 bits 2.2 * * 2.0 * * 1.8 * ** * 1.6 * ***** Relative 1.3 * ***** Entropy 1.1 * ***** (12.6 bits) 0.9 * ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:5416337-5416417 51 1.24e-05 TTTCTCTGTG CTCTCTCT TTCTTACGCA chrII:2504583-2504663 9 1.24e-05 CTCCCGCA CTCTCTCT GCGTCTCACG chrX:1961031-1961111 62 1.24e-05 AAAAACGGCA CTCTCTCT TACTGCAAAG chrV:20380510-20380590 10 1.24e-05 tgtctctcg ctctctct catttctctg chrII:3370216-3370296 2 1.24e-05 C CTCTCTCT AACCACCTGC chrIV:2765248-2765328 19 2.49e-05 ctcctccacg ctctctca ccctgcaaac chrV:20383230-20383310 60 2.49e-05 TCTGCCACGt ctctctca tttccttgtt chrV:3905985-3906065 4 2.49e-05 AAA ctctctca ctctcccact chrX:1977867-1977947 69 2.49e-05 ACCTCTCACA CTCTCTCA CTCC chrII:1848295-1848375 60 2.49e-05 CTGTCGTGCA CTCTCTCA CGTCAATTTG chrX:1682725-1682805 69 2.49e-05 ctttctctac ctctctca ctct chrX:2000614-2000694 63 2.49e-05 GCCTCTCCTC CTCTCTCA CTTATCCAAA chrX:7340467-7340547 62 3.75e-05 TTTTTGCCCG CACTCTCT CCACGCGCCT chrIV:1891664-1891744 47 3.75e-05 CTCACTCACT CACTCTCT TTTGTCTGTG chrI:12534568-12534648 31 5.03e-05 CTTCTATGCT CACTCTCA CATTCTGCGT chrI:6316784-6316864 58 5.03e-05 AGATAATTAG CACTCTCA AAAATGTGAT chrX:17420036-17420116 34 5.03e-05 GATCGTACGA CACTCTCA GATAGTCTAT chrIII:2294890-2294970 56 6.68e-05 CTCTGAGTCT CTCTTTCT TGGTCTATTT chrX:1405684-1405764 8 6.68e-05 CAAATTC CTCTTTCT CCCTCGTGTC chrV:3410232-3410312 67 6.68e-05 TTGACCAGTT CTCTTTCT CCGCTG chrIII:346185-346265 52 7.61e-05 CATCGCAAGA CCCTCTCT GTCTCTCGTT chrX:1371021-1371101 11 9.28e-05 AGATAGTAGA CTCTTTCA AATGTTACAA chrII:3000691-3000771 7 1.02e-04 ACATGC CCCTCTCA TTTCTCTACG chrIII:9626778-9626858 33 1.19e-04 TCGATGAAGG CTCTCTTT GATCGTAGTT chrV:8039341-8039421 53 1.19e-04 TCATTTTGAT CTCTCTTT TTTCCTTCTC chrX:1871140-1871220 59 1.31e-04 CACTACCTTT CTCTCACT CCTCTATCTT chrII:2708040-2708120 56 1.31e-04 ATGCCTGCGT CTCTCACT TGTCGACGCC chrII:1892602-1892682 57 1.48e-04 TTCTCTGCTT CTCTCTTA CCTCTCAGTG chrIV:10387509-10387589 42 1.78e-04 ACACCTAATC CACTTTCT TTAAAATTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:5416337-5416417 1.2e-05 50_[+1]_22 chrII:2504583-2504663 1.2e-05 8_[+1]_64 chrX:1961031-1961111 1.2e-05 61_[+1]_11 chrV:20380510-20380590 1.2e-05 9_[+1]_63 chrII:3370216-3370296 1.2e-05 1_[+1]_71 chrIV:2765248-2765328 2.5e-05 18_[+1]_54 chrV:20383230-20383310 2.5e-05 59_[+1]_13 chrV:3905985-3906065 2.5e-05 3_[+1]_69 chrX:1977867-1977947 2.5e-05 68_[+1]_4 chrII:1848295-1848375 2.5e-05 59_[+1]_13 chrX:1682725-1682805 2.5e-05 68_[+1]_4 chrX:2000614-2000694 2.5e-05 62_[+1]_10 chrX:7340467-7340547 3.8e-05 61_[+1]_11 chrIV:1891664-1891744 3.8e-05 46_[+1]_26 chrI:12534568-12534648 5e-05 30_[+1]_42 chrI:6316784-6316864 5e-05 57_[+1]_15 chrX:17420036-17420116 5e-05 33_[+1]_39 chrIII:2294890-2294970 6.7e-05 55_[+1]_17 chrX:1405684-1405764 6.7e-05 7_[+1]_65 chrV:3410232-3410312 6.7e-05 66_[+1]_6 chrIII:346185-346265 7.6e-05 51_[+1]_21 chrX:1371021-1371101 9.3e-05 10_[+1]_62 chrII:3000691-3000771 0.0001 6_[+1]_66 chrIII:9626778-9626858 0.00012 32_[+1]_40 chrV:8039341-8039421 0.00012 52_[+1]_20 chrX:1871140-1871220 0.00013 58_[+1]_14 chrII:2708040-2708120 0.00013 55_[+1]_17 chrII:1892602-1892682 0.00015 56_[+1]_16 chrIV:10387509-10387589 0.00018 41_[+1]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTCTCW width=8 seqs=29 chrI:5416337-5416417 ( 51) CTCTCTCT 1 chrII:2504583-2504663 ( 9) CTCTCTCT 1 chrX:1961031-1961111 ( 62) CTCTCTCT 1 chrV:20380510-20380590 ( 10) CTCTCTCT 1 chrII:3370216-3370296 ( 2) CTCTCTCT 1 chrIV:2765248-2765328 ( 19) CTCTCTCA 1 chrV:20383230-20383310 ( 60) CTCTCTCA 1 chrV:3905985-3906065 ( 4) CTCTCTCA 1 chrX:1977867-1977947 ( 69) CTCTCTCA 1 chrII:1848295-1848375 ( 60) CTCTCTCA 1 chrX:1682725-1682805 ( 69) CTCTCTCA 1 chrX:2000614-2000694 ( 63) CTCTCTCA 1 chrX:7340467-7340547 ( 62) CACTCTCT 1 chrIV:1891664-1891744 ( 47) CACTCTCT 1 chrI:12534568-12534648 ( 31) CACTCTCA 1 chrI:6316784-6316864 ( 58) CACTCTCA 1 chrX:17420036-17420116 ( 34) CACTCTCA 1 chrIII:2294890-2294970 ( 56) CTCTTTCT 1 chrX:1405684-1405764 ( 8) CTCTTTCT 1 chrV:3410232-3410312 ( 67) CTCTTTCT 1 chrIII:346185-346265 ( 52) CCCTCTCT 1 chrX:1371021-1371101 ( 11) CTCTTTCA 1 chrII:3000691-3000771 ( 7) CCCTCTCA 1 chrIII:9626778-9626858 ( 33) CTCTCTTT 1 chrV:8039341-8039421 ( 53) CTCTCTTT 1 chrX:1871140-1871220 ( 59) CTCTCACT 1 chrII:2708040-2708120 ( 56) CTCTCACT 1 chrII:1892602-1892682 ( 57) CTCTCTTA 1 chrIV:10387509-10387589 ( 42) CACTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.2675 E= 2.4e-003 -1150 225 -1150 -1150 -47 -161 -1150 136 -1150 225 -1150 -1150 -1150 -1150 -1150 183 -1150 197 -1150 -71 -205 -1150 -1150 173 -1150 209 -1150 -144 65 -1150 -1150 97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.4e-003 0.000000 1.000000 0.000000 0.000000 0.206897 0.068966 0.000000 0.724138 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.827586 0.000000 0.172414 0.068966 0.000000 0.000000 0.931034 0.000000 0.896552 0.000000 0.103448 0.448276 0.000000 0.000000 0.551724 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCW MEME-1 regular expression -------------------------------------------------------------------------------- C[TA]CTCTC[TA] -------------------------------------------------------------------------------- Time 5.37 secs. ******************************************************************************** ******************************************************************************** MOTIF ACGCAGAC MEME-2 width = 8 sites = 20 llr = 201 E-value = 4.3e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACGCAGAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 9:::a:9: pos.-specific C :a:a:::7 probability G 2:a::a13 matrix T ::::::1: bits 2.2 *** * 2.0 *** * 1.8 ***** 1.6 ***** Relative 1.3 ******** Entropy 1.1 ******** (14.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACGCAGAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGCAGAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:14646245-14646325 13 1.08e-05 gggagaagag acgcagac atctcatctg chrX:1965000-1965080 60 1.08e-05 CAATTGAGAG ACGCAGAC GGAAAACCCT chrV:2826988-2827068 38 1.08e-05 GAATGAGGAG ACGCAGAC ACAAAAACAG chrX:403134-403214 68 1.08e-05 TCTAACAGAA ACGCAGAC ATTGA chrII:1663692-1663772 37 1.08e-05 GTACTCAGAG ACGCAGAC GGCAAAATCA chrII:3743853-3743933 32 1.08e-05 TCCACTGGAG ACGCAGAC AGTTGGTGGA chrV:17538454-17538534 27 1.08e-05 AAAATTGCAA ACGCAGAC AGAAAAAGAT chrII:3303761-3303841 33 1.08e-05 ATAGTGGAGA ACGCAGAC AAATTGAGAT chrII:2708040-2708120 17 1.08e-05 GAGGGTGGAG ACGCAGAC GTAAAAAACA chrII:3423070-3423150 9 1.08e-05 agagagag aCGCAGAC TATGATGCTC chrV:635800-635880 55 2.22e-05 CTCGCTGGAC ACGCAGAG TGTGAGAGAC chrV:16040632-16040712 24 2.22e-05 CCAGCCGAAT ACGCAGAG TGCACAGTTT chrII:3129162-3129242 68 2.22e-05 ATCAGAAGAG ACGCAGAG ATGGA chrX:1938080-1938160 58 2.22e-05 CCTGGCagag acgcagag gagacaacca chrV:18782899-18782979 31 2.22e-05 TTGAGAAGAG ACGCAGAG AAAAGTGTTC chrII:1664409-1664489 17 3.06e-05 TCATGTTTCG GCGCAGAC GGGCTCTTGT chrII:2502755-2502835 12 3.06e-05 GTCGTAGAGA GCGCAGAC TAGGGGTGTA chrX:1845607-1845687 25 3.95e-05 ggagaagaga gcgcagag agatgagagg chrII:3616778-3616858 22 4.79e-05 CACATTTGAG ACGCAGGC AGGCAGCCAG chrX:1961031-1961111 14 5.85e-05 TAGTGTGTCG ACGCAGTC GTGAAGAGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGCAGAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:14646245-14646325 1.1e-05 12_[+2]_60 chrX:1965000-1965080 1.1e-05 59_[+2]_13 chrV:2826988-2827068 1.1e-05 37_[+2]_35 chrX:403134-403214 1.1e-05 67_[+2]_5 chrII:1663692-1663772 1.1e-05 36_[+2]_36 chrII:3743853-3743933 1.1e-05 31_[+2]_41 chrV:17538454-17538534 1.1e-05 26_[+2]_46 chrII:3303761-3303841 1.1e-05 32_[+2]_40 chrII:2708040-2708120 1.1e-05 16_[+2]_56 chrII:3423070-3423150 1.1e-05 8_[+2]_64 chrV:635800-635880 2.2e-05 54_[+2]_18 chrV:16040632-16040712 2.2e-05 23_[+2]_49 chrII:3129162-3129242 2.2e-05 67_[+2]_5 chrX:1938080-1938160 2.2e-05 57_[+2]_15 chrV:18782899-18782979 2.2e-05 30_[+2]_42 chrII:1664409-1664489 3.1e-05 16_[+2]_56 chrII:2502755-2502835 3.1e-05 11_[+2]_61 chrX:1845607-1845687 3.9e-05 24_[+2]_48 chrII:3616778-3616858 4.8e-05 21_[+2]_51 chrX:1961031-1961111 5.9e-05 13_[+2]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGCAGAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACGCAGAC width=8 seqs=20 chrI:14646245-14646325 ( 13) ACGCAGAC 1 chrX:1965000-1965080 ( 60) ACGCAGAC 1 chrV:2826988-2827068 ( 38) ACGCAGAC 1 chrX:403134-403214 ( 68) ACGCAGAC 1 chrII:1663692-1663772 ( 37) ACGCAGAC 1 chrII:3743853-3743933 ( 32) ACGCAGAC 1 chrV:17538454-17538534 ( 27) ACGCAGAC 1 chrII:3303761-3303841 ( 33) ACGCAGAC 1 chrII:2708040-2708120 ( 17) ACGCAGAC 1 chrII:3423070-3423150 ( 9) ACGCAGAC 1 chrV:635800-635880 ( 55) ACGCAGAG 1 chrV:16040632-16040712 ( 24) ACGCAGAG 1 chrII:3129162-3129242 ( 68) ACGCAGAG 1 chrX:1938080-1938160 ( 58) ACGCAGAG 1 chrV:18782899-18782979 ( 31) ACGCAGAG 1 chrII:1664409-1664489 ( 17) GCGCAGAC 1 chrII:2502755-2502835 ( 12) GCGCAGAC 1 chrX:1845607-1845687 ( 25) GCGCAGAG 1 chrII:3616778-3616858 ( 22) ACGCAGGC 1 chrX:1961031-1961111 ( 14) ACGCAGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGCAGAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7763 E= 4.3e-007 157 -1097 -56 -1097 -1097 225 -1097 -1097 -1097 -1097 217 -1097 -1097 225 -1097 -1097 180 -1097 -1097 -1097 -1097 -1097 217 -1097 165 -1097 -215 -249 -1097 173 44 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGCAGAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 4.3e-007 0.850000 0.000000 0.150000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.900000 0.000000 0.050000 0.050000 0.000000 0.700000 0.300000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGCAGAC MEME-2 regular expression -------------------------------------------------------------------------------- ACGCAGA[CG] -------------------------------------------------------------------------------- Time 9.05 secs. ******************************************************************************** ******************************************************************************** MOTIF CYCTTYTY MEME-3 width = 8 sites = 25 llr = 216 E-value = 5.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCTTYTY MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a4a:36:6 probability G :::::::: matrix T :6:a74a4 bits 2.2 * * 2.0 * * 1.8 * ** * 1.6 * ** * Relative 1.3 * ** * Entropy 1.1 ******** (12.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTTCTC consensus C CT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTTYTY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:13466443-13466523 23 1.24e-05 AACTCTGGAA CTCTTCTC GTACATCCAT chrII:1239755-1239835 67 1.24e-05 AGCCGGGTGT CTCTTCTC AAGGAG chrV:4688728-4688808 14 1.24e-05 TCTCGGGATG CTCTTCTC GCAAATACTC chrV:4187039-4187119 34 1.24e-05 TTTACCTCTC CTCTTCTC CTTCATTTTA chrII:3129162-3129242 9 2.16e-05 GACGAGTT CCCTTCTC ATGTACCGAG chrII:1519982-1520062 16 3.09e-05 GCCTGCCCCA CTCTCCTC TACGCCCATG chrX:2000614-2000694 55 3.09e-05 CTTTCTCTGC CTCTCCTC CTCTCTCACT chrIV:2765248-2765328 7 7.08e-05 gtctcc ccctcctc cacgctctct chrIV:8537744-8537824 71 7.08e-05 TCCTCCTTTT CTCTTCTT TT chrII:8745051-8745131 4 7.08e-05 TGT CTCTTTTC CATTGATCCT chrIII:2294890-2294970 38 7.08e-05 TATTTACCTT CTCTTCTT CTCTGAGTCT chrV:10210226-10210306 61 7.08e-05 TATTACCGTA CTCTTCTT CTTCCTCTAT chrI:6497544-6497624 65 7.08e-05 TGAAAATGAA CTCTTCTT TGCGGATA chrX:403134-403214 11 7.08e-05 GGGATCAAAT CCCTCCTC GCGCGAAATA chrII:1683962-1684042 14 7.08e-05 TTCTCTGAAC CTCTTTTC TCTCATTTTC chrII:3370216-3370296 22 7.08e-05 CCACCTGCGT CTCTTCTT CTCGGCCGTC chrI:5416337-5416417 11 9.55e-05 CCCACTTTTC CCCTTTTC ACCGCCGAAG chrIV:15559246-15559326 15 9.55e-05 CTATTGGTCG CCCTTTTC CGCAGTCATA chrIV:8597635-8597715 27 1.20e-04 TTTCTCTACG CTCTCCTT TCCAGCATAT chrX:2144263-2144343 52 1.61e-04 AGTTTTATTT CTCTTTTT CTGGAGTCAG chrV:20380510-20380590 47 1.61e-04 ttcctctagt ccctctTC CTCACCGTTC chrII:1736518-1736598 26 1.61e-04 CTCTGTCTAT CCCTCTTC TGATTGCGTG chrX:7340467-7340547 48 1.77e-04 CCTACACTCT CCCTTTTT TGCCCGCACT chrX:1492321-1492401 37 1.77e-04 GTGCATATAT CCCTTTTT CCTATTTGGC chrX:1682725-1682805 55 1.94e-04 CTATTTCGCG ctctcttt ctctacctct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTTYTY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:13466443-13466523 1.2e-05 22_[+3]_50 chrII:1239755-1239835 1.2e-05 66_[+3]_6 chrV:4688728-4688808 1.2e-05 13_[+3]_59 chrV:4187039-4187119 1.2e-05 33_[+3]_39 chrII:3129162-3129242 2.2e-05 8_[+3]_64 chrII:1519982-1520062 3.1e-05 15_[+3]_57 chrX:2000614-2000694 3.1e-05 54_[+3]_18 chrIV:2765248-2765328 7.1e-05 6_[+3]_66 chrIV:8537744-8537824 7.1e-05 70_[+3]_2 chrII:8745051-8745131 7.1e-05 3_[+3]_69 chrIII:2294890-2294970 7.1e-05 37_[+3]_35 chrV:10210226-10210306 7.1e-05 60_[+3]_12 chrI:6497544-6497624 7.1e-05 64_[+3]_8 chrX:403134-403214 7.1e-05 10_[+3]_62 chrII:1683962-1684042 7.1e-05 13_[+3]_59 chrII:3370216-3370296 7.1e-05 21_[+3]_51 chrI:5416337-5416417 9.6e-05 10_[+3]_62 chrIV:15559246-15559326 9.6e-05 14_[+3]_58 chrIV:8597635-8597715 0.00012 26_[+3]_46 chrX:2144263-2144343 0.00016 51_[+3]_21 chrV:20380510-20380590 0.00016 46_[+3]_26 chrII:1736518-1736598 0.00016 25_[+3]_47 chrX:7340467-7340547 0.00018 47_[+3]_25 chrX:1492321-1492401 0.00018 36_[+3]_36 chrX:1682725-1682805 0.00019 54_[+3]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTTYTY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCTTYTY width=8 seqs=25 chrV:13466443-13466523 ( 23) CTCTTCTC 1 chrII:1239755-1239835 ( 67) CTCTTCTC 1 chrV:4688728-4688808 ( 14) CTCTTCTC 1 chrV:4187039-4187119 ( 34) CTCTTCTC 1 chrII:3129162-3129242 ( 9) CCCTTCTC 1 chrII:1519982-1520062 ( 16) CTCTCCTC 1 chrX:2000614-2000694 ( 55) CTCTCCTC 1 chrIV:2765248-2765328 ( 7) CCCTCCTC 1 chrIV:8537744-8537824 ( 71) CTCTTCTT 1 chrII:8745051-8745131 ( 4) CTCTTTTC 1 chrIII:2294890-2294970 ( 38) CTCTTCTT 1 chrV:10210226-10210306 ( 61) CTCTTCTT 1 chrI:6497544-6497624 ( 65) CTCTTCTT 1 chrX:403134-403214 ( 11) CCCTCCTC 1 chrII:1683962-1684042 ( 14) CTCTTTTC 1 chrII:3370216-3370296 ( 22) CTCTTCTT 1 chrI:5416337-5416417 ( 11) CCCTTTTC 1 chrIV:15559246-15559326 ( 15) CCCTTTTC 1 chrIV:8597635-8597715 ( 27) CTCTCCTT 1 chrX:2144263-2144343 ( 52) CTCTTTTT 1 chrV:20380510-20380590 ( 47) CCCTCTTC 1 chrII:1736518-1736598 ( 26) CCCTCTTC 1 chrX:7340467-7340547 ( 48) CCCTTTTT 1 chrX:1492321-1492401 ( 37) CCCTTTTT 1 chrX:1682725-1682805 ( 55) CTCTCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTTYTY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.4326 E= 5.5e+002 -1129 225 -1129 -1129 -1129 77 -1129 119 -1129 225 -1129 -1129 -1129 -1129 -1129 183 -1129 60 -1129 127 -1129 151 -1129 51 -1129 -1129 -1129 183 -1129 151 -1129 51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTTYTY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 5.5e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.360000 0.000000 0.640000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.320000 0.000000 0.680000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.600000 0.000000 0.400000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTTYTY MEME-3 regular expression -------------------------------------------------------------------------------- C[TC]CT[TC][CT]T[CT] -------------------------------------------------------------------------------- Time 12.69 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGAARAR MEME-4 width = 8 sites = 44 llr = 337 E-value = 3.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAARAR MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a2994a5 pos.-specific C :::1:::: probability G a:6:16:5 matrix T ::2::::: bits 2.2 * 2.0 * 1.8 * * 1.6 ** * * Relative 1.3 ** ** * Entropy 1.1 ** **** (11.0 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAAGAA consensus A A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAARAR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:14646245-14646325 5 1.63e-05 gcgg gagaagag acgcagacat chrIV:2765248-2765328 61 1.63e-05 tctcggcggg gagaagag ctataaaaaa chrX:1845607-1845687 16 1.63e-05 AAagagacgg gagaagag agcgcagaga chrX:11059957-11060037 12 1.63e-05 CGAAAATGAA GAGAAGAG GGGGAGCTTG chrV:11820212-11820292 12 1.63e-05 GTTTTCAAGT GAGAAGAG ACCATTGAAT chrV:3841584-3841664 10 1.63e-05 GCCACAGGA GAGAAGAG GTGGAGGGGA chrV:18782899-18782979 23 1.63e-05 GTCAAGAATT GAGAAGAG ACGCAGAGAA chrV:17315214-17315294 3 1.63e-05 GG GAGAAGAG AGTGAGGGAA chrIII:7792390-7792470 45 3.72e-05 TCGCCATGGA GAGAAGAA GGAAGGGCGC chrIV:14094359-14094439 64 3.72e-05 TAATCCAAAG GAGAAGAA CTGCATTGT chrIII:10817866-10817946 43 8.51e-05 TAAAAATGAT GAGAAAAA TCTATTTTAG chrV:6221379-6221459 55 8.51e-05 ACAATCGAGA GAGAAAAA TCGGCAAAAA chrX:10756343-10756423 66 8.51e-05 AGAAATAGGT GAGAAAAA GATTACT chrII:1820070-1820150 26 8.51e-05 TAGAGGTTTA GAGAAAAA AAGGAAACGG chrX:14137005-14137085 54 8.51e-05 GATACTCATG GAGAAAAA GATAATATAC chrV:17345064-17345144 34 8.51e-05 TAAACGGTGA GAGAAAAA TAATGTGAAA chrII:1892602-1892682 31 8.51e-05 CAAGACGCCA GAGAAAAA GACGAAAATT chrIV:11081502-11081582 12 1.33e-04 CACAGAGAGG GAAAAGAA ACACATGGTT chrV:12320600-12320680 14 1.33e-04 TACAGTACTG GAAAAGAA TCTTCTGATA chrII:8745051-8745131 65 1.33e-04 TGGGGGTTAA GAAAAGAA GAGAATAA chrV:18737805-18737885 65 1.33e-04 ATTGGGGACG GAAAAGAA AATTGTTG chrV:11122569-11122649 36 1.54e-04 ATCGAATCAA GATAAGAG ACAACGCGTC chrX:16695359-16695439 35 1.54e-04 GGAAACAGAT GATAAGAG ACTGTTGTCT chrIV:7105261-7105341 25 2.20e-04 CCGTAAAGTT GAAAAAAG ATGAAGGTCA chrII:1851890-1851970 73 2.20e-04 CAAGCTTCTT GATAAGAA chrX:1405684-1405764 32 2.20e-04 TGTCTCTTCA GAGAGGAG ACAGCATAAA chrII:3311413-3311493 65 2.20e-04 ACGTATAACT GATAAGAA AAGTGATT chrII:1949310-1949390 58 2.20e-04 CAAGATTCTT GATAAGAA ATACTTTGTG chrIII:7737745-7737825 31 2.71e-04 ACGTACGTAG GAAAAAAA CTAGTAACTT chrIII:9814122-9814202 57 2.71e-04 GGAGAACAAA GAGAGGAA TCAATTGTTG chrIII:344452-344532 25 2.71e-04 AGAAATGGGG GAAAAAAA GGATAATGTA chrII:5619359-5619439 40 2.71e-04 AAACAAACGG GAAAAAAA ATCGGGATCA chrX:1445753-1445833 30 2.71e-04 CTAGAGGATA GAAAAAAA AATAGGCCAC chrIV:15559246-15559326 34 2.71e-04 GCAGTCATAG GAAAAAAA CCAAAGTGCT chrII:13853081-13853161 61 2.97e-04 AAGTTACAAA GATAAAAG TAAACTTTTA chrX:13349930-13350010 42 2.97e-04 AATGCACAAG GATAAAAG CCAGAAGGTG chrX:6088847-6088927 55 3.48e-04 CTACTACAAT GAGAGAAG TTTTAGTTTT chrIII:9626778-9626858 62 3.48e-04 GTCGTATTTG GAGAGAAG CGATTCGAAT chrIV:1904397-1904477 53 3.48e-04 TGAGAGGTGG GAGAGAAG CGATAAGGAG chrIII:1249327-1249407 58 3.60e-04 CTGAGCGGGA GAGCAGAG ACCTATAGAG chrV:17159375-17159455 37 3.60e-04 ACGGGTAGAG GAGCAGAG ATAGGGAATG chrIII:7370401-7370481 67 4.09e-04 TGACATAATC GGGAAGAG TGTCCG chrII:14605199-14605279 70 4.24e-04 AATCGTCAAG GAGCAAAG CTT chrM:1829-1909 23 4.40e-04 GTCATTTATT GGGAAGAA GACAAAATCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAARAR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:14646245-14646325 1.6e-05 4_[+4]_68 chrIV:2765248-2765328 1.6e-05 60_[+4]_12 chrX:1845607-1845687 1.6e-05 15_[+4]_57 chrX:11059957-11060037 1.6e-05 11_[+4]_61 chrV:11820212-11820292 1.6e-05 11_[+4]_61 chrV:3841584-3841664 1.6e-05 9_[+4]_63 chrV:18782899-18782979 1.6e-05 22_[+4]_50 chrV:17315214-17315294 1.6e-05 2_[+4]_70 chrIII:7792390-7792470 3.7e-05 44_[+4]_28 chrIV:14094359-14094439 3.7e-05 63_[+4]_9 chrIII:10817866-10817946 8.5e-05 42_[+4]_30 chrV:6221379-6221459 8.5e-05 54_[+4]_18 chrX:10756343-10756423 8.5e-05 65_[+4]_7 chrII:1820070-1820150 8.5e-05 25_[+4]_47 chrX:14137005-14137085 8.5e-05 53_[+4]_19 chrV:17345064-17345144 8.5e-05 33_[+4]_39 chrII:1892602-1892682 8.5e-05 30_[+4]_42 chrIV:11081502-11081582 0.00013 11_[+4]_61 chrV:12320600-12320680 0.00013 13_[+4]_59 chrII:8745051-8745131 0.00013 64_[+4]_8 chrV:18737805-18737885 0.00013 64_[+4]_8 chrV:11122569-11122649 0.00015 35_[+4]_37 chrX:16695359-16695439 0.00015 34_[+4]_38 chrIV:7105261-7105341 0.00022 24_[+4]_48 chrII:1851890-1851970 0.00022 72_[+4] chrX:1405684-1405764 0.00022 31_[+4]_41 chrII:3311413-3311493 0.00022 64_[+4]_8 chrII:1949310-1949390 0.00022 57_[+4]_15 chrIII:7737745-7737825 0.00027 30_[+4]_42 chrIII:9814122-9814202 0.00027 56_[+4]_16 chrIII:344452-344532 0.00027 24_[+4]_48 chrII:5619359-5619439 0.00027 39_[+4]_33 chrX:1445753-1445833 0.00027 29_[+4]_43 chrIV:15559246-15559326 0.00027 33_[+4]_39 chrII:13853081-13853161 0.0003 60_[+4]_12 chrX:13349930-13350010 0.0003 41_[+4]_31 chrX:6088847-6088927 0.00035 54_[+4]_18 chrIII:9626778-9626858 0.00035 61_[+4]_11 chrIV:1904397-1904477 0.00035 52_[+4]_20 chrIII:1249327-1249407 0.00036 57_[+4]_15 chrV:17159375-17159455 0.00036 36_[+4]_36 chrIII:7370401-7370481 0.00041 66_[+4]_6 chrII:14605199-14605279 0.00042 69_[+4]_3 chrM:1829-1909 0.00044 22_[+4]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAARAR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAARAR width=8 seqs=44 chrI:14646245-14646325 ( 5) GAGAAGAG 1 chrIV:2765248-2765328 ( 61) GAGAAGAG 1 chrX:1845607-1845687 ( 16) GAGAAGAG 1 chrX:11059957-11060037 ( 12) GAGAAGAG 1 chrV:11820212-11820292 ( 12) GAGAAGAG 1 chrV:3841584-3841664 ( 10) GAGAAGAG 1 chrV:18782899-18782979 ( 23) GAGAAGAG 1 chrV:17315214-17315294 ( 3) GAGAAGAG 1 chrIII:7792390-7792470 ( 45) GAGAAGAA 1 chrIV:14094359-14094439 ( 64) GAGAAGAA 1 chrIII:10817866-10817946 ( 43) GAGAAAAA 1 chrV:6221379-6221459 ( 55) GAGAAAAA 1 chrX:10756343-10756423 ( 66) GAGAAAAA 1 chrII:1820070-1820150 ( 26) GAGAAAAA 1 chrX:14137005-14137085 ( 54) GAGAAAAA 1 chrV:17345064-17345144 ( 34) GAGAAAAA 1 chrII:1892602-1892682 ( 31) GAGAAAAA 1 chrIV:11081502-11081582 ( 12) GAAAAGAA 1 chrV:12320600-12320680 ( 14) GAAAAGAA 1 chrII:8745051-8745131 ( 65) GAAAAGAA 1 chrV:18737805-18737885 ( 65) GAAAAGAA 1 chrV:11122569-11122649 ( 36) GATAAGAG 1 chrX:16695359-16695439 ( 35) GATAAGAG 1 chrIV:7105261-7105341 ( 25) GAAAAAAG 1 chrII:1851890-1851970 ( 73) GATAAGAA 1 chrX:1405684-1405764 ( 32) GAGAGGAG 1 chrII:3311413-3311493 ( 65) GATAAGAA 1 chrII:1949310-1949390 ( 58) GATAAGAA 1 chrIII:7737745-7737825 ( 31) GAAAAAAA 1 chrIII:9814122-9814202 ( 57) GAGAGGAA 1 chrIII:344452-344532 ( 25) GAAAAAAA 1 chrII:5619359-5619439 ( 40) GAAAAAAA 1 chrX:1445753-1445833 ( 30) GAAAAAAA 1 chrIV:15559246-15559326 ( 34) GAAAAAAA 1 chrII:13853081-13853161 ( 61) GATAAAAG 1 chrX:13349930-13350010 ( 42) GATAAAAG 1 chrX:6088847-6088927 ( 55) GAGAGAAG 1 chrIII:9626778-9626858 ( 62) GAGAGAAG 1 chrIV:1904397-1904477 ( 53) GAGAGAAG 1 chrIII:1249327-1249407 ( 58) GAGCAGAG 1 chrV:17159375-17159455 ( 37) GAGCAGAG 1 chrIII:7370401-7370481 ( 67) GGGAAGAG 1 chrII:14605199-14605279 ( 70) GAGCAAAG 1 chrM:1829-1909 ( 23) GGGAAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAARAR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 3.0e+003 -1210 -1210 217 -1210 174 -1210 -228 -1210 -33 -1210 147 -82 170 -163 -1210 -1210 163 -1210 -96 -1210 59 -1210 136 -1210 180 -1210 -1210 -1210 87 -1210 111 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAARAR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 3.0e+003 0.000000 0.000000 1.000000 0.000000 0.954545 0.000000 0.045455 0.000000 0.227273 0.000000 0.613636 0.159091 0.931818 0.068182 0.000000 0.000000 0.886364 0.000000 0.113636 0.000000 0.431818 0.000000 0.568182 0.000000 1.000000 0.000000 0.000000 0.000000 0.522727 0.000000 0.477273 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAARAR MEME-4 regular expression -------------------------------------------------------------------------------- GA[GA]AA[GA]A[AG] -------------------------------------------------------------------------------- Time 16.30 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTGYGYC MEME-5 width = 8 sites = 11 llr = 112 E-value = 5.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTGYGYC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a::6:4a probability G :::a:a:: matrix T a:a:4:6: bits 2.2 * * * * 2.0 * * * * 1.8 **** * * 1.6 **** * * Relative 1.3 **** * * Entropy 1.1 ******** (14.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTGCGTC consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGYGYC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:12534568-12534648 42 1.03e-05 ACTCTCACAT TCTGCGTC TCCGCCGCGT chrIV:1892773-1892853 1 1.03e-05 . TCTGCGTC CAATCAGCGT chrV:3841584-3841664 47 1.03e-05 TCTTATAGAC TCTGCGTC TCACCCTCTG chrII:1736518-1736598 66 1.03e-05 GTCTCCGCCG TCTGCGTC TCTATGA chrX:1796214-1796294 46 1.03e-05 GAACAACTTT TCTGCGTC TCCTCATGCA chrV:17547261-17547341 41 1.80e-05 TCTCGTTATG TCTGCGCC TCTATACGAA chrII:1519982-1520062 1 1.80e-05 . TCTGCGCC TGCCCCACTC chrV:20383230-20383310 37 3.17e-05 GTTGGAAAAA TCTGTGTC TCGTGTCTGC chrII:3423070-3423150 51 3.17e-05 GCACTCACAC TCTGTGTC GGTTTATTGT chrI:10516807-10516887 18 4.19e-05 TTCCGAGGTT TCTGTGCC GCCAAGTACT chrII:1949310-1949390 24 4.19e-05 ACAGTCGATA TCTGTGCC TGGTCGGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGYGYC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:12534568-12534648 1e-05 41_[+5]_31 chrIV:1892773-1892853 1e-05 [+5]_72 chrV:3841584-3841664 1e-05 46_[+5]_26 chrII:1736518-1736598 1e-05 65_[+5]_7 chrX:1796214-1796294 1e-05 45_[+5]_27 chrV:17547261-17547341 1.8e-05 40_[+5]_32 chrII:1519982-1520062 1.8e-05 [+5]_72 chrV:20383230-20383310 3.2e-05 36_[+5]_36 chrII:3423070-3423150 3.2e-05 50_[+5]_22 chrI:10516807-10516887 4.2e-05 17_[+5]_55 chrII:1949310-1949390 4.2e-05 23_[+5]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGYGYC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTGYGYC width=8 seqs=11 chrI:12534568-12534648 ( 42) TCTGCGTC 1 chrIV:1892773-1892853 ( 1) TCTGCGTC 1 chrV:3841584-3841664 ( 47) TCTGCGTC 1 chrII:1736518-1736598 ( 66) TCTGCGTC 1 chrX:1796214-1796294 ( 46) TCTGCGTC 1 chrV:17547261-17547341 ( 41) TCTGCGCC 1 chrII:1519982-1520062 ( 1) TCTGCGCC 1 chrV:20383230-20383310 ( 37) TCTGTGTC 1 chrII:3423070-3423150 ( 51) TCTGTGTC 1 chrI:10516807-10516887 ( 18) TCTGTGCC 1 chrII:1949310-1949390 ( 24) TCTGTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGYGYC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 5.4e+002 -1010 -1010 -1010 183 -1010 225 -1010 -1010 -1010 -1010 -1010 183 -1010 -1010 217 -1010 -1010 159 -1010 37 -1010 -1010 217 -1010 -1010 79 -1010 118 -1010 225 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGYGYC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 5.4e+002 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.636364 0.000000 0.363636 0.000000 0.000000 1.000000 0.000000 0.000000 0.363636 0.000000 0.636364 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGYGYC MEME-5 regular expression -------------------------------------------------------------------------------- TCTG[CT]G[TC]C -------------------------------------------------------------------------------- Time 19.83 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1796214-1796294 1.03e-03 45_[+5(1.03e-05)]_27 chrV:18737805-18737885 2.79e-01 80 chrX:2000614-2000694 2.08e-04 54_[+3(3.09e-05)]_[+1(2.49e-05)]_10 chrV:17315214-17315294 3.07e-02 2_[+4(1.63e-05)]_70 chrX:1682725-1682805 1.55e-03 56_[+1(6.68e-05)]_4_[+1(2.49e-05)]_\ 4 chrII:1736518-1736598 7.53e-04 65_[+5(1.03e-05)]_7 chrII:3370216-3370296 1.59e-04 1_[+1(1.24e-05)]_12_[+3(7.08e-05)]_\ 51 chrII:1848295-1848375 1.15e-01 59_[+1(2.49e-05)]_13 chrX:1977867-1977947 6.48e-03 48_[+1(6.68e-05)]_12_[+1(2.49e-05)]_\ 4 chrII:1892602-1892682 1.69e-04 30_[+4(8.51e-05)]_42 chrX:1989735-1989815 6.48e-01 80 chrII:3423070-3423150 1.53e-05 8_[+2(1.08e-05)]_34_[+5(3.17e-05)]_\ 22 chrII:2503846-2503926 6.73e-01 80 chrII:3616778-3616858 1.01e-01 21_[+2(4.79e-05)]_51 chrV:3905985-3906065 7.71e-03 3_[+1(2.49e-05)]_69 chrV:18782899-18782979 3.39e-04 22_[+4(1.63e-05)]_[+2(2.22e-05)]_42 chrV:20380510-20380590 6.21e-04 9_[+1(1.24e-05)]_63 chrII:2708040-2708120 3.86e-05 16_[+2(1.08e-05)]_56 chrX:1871140-1871220 1.42e-02 80 chrX:1938080-1938160 3.72e-02 57_[+2(2.22e-05)]_15 chrV:17159375-17159455 2.43e-01 80 chrI:12173523-12173603 9.41e-01 80 chrX:14584500-14584580 9.92e-01 80 chrV:17258415-17258495 1.96e-01 80 chrIV:1904397-1904477 2.71e-02 80 chrII:3303761-3303841 8.74e-02 32_[+2(1.08e-05)]_40 chrV:3841584-3841664 9.47e-05 9_[+4(1.63e-05)]_29_[+5(1.03e-05)]_\ 26 chrII:10496367-10496447 2.35e-01 80 chrV:18776453-18776533 9.53e-01 80 chrII:2502755-2502835 9.83e-02 11_[+2(3.06e-05)]_61 chrV:17538454-17538534 3.28e-02 26_[+2(1.08e-05)]_46 chrX:1961031-1961111 1.28e-04 13_[+2(5.85e-05)]_40_[+1(1.24e-05)]_\ 11 chrIV:8597635-8597715 6.41e-02 80 chrIII:10815453-10815533 1.32e-01 80 chrII:1683962-1684042 1.76e-02 13_[+3(7.08e-05)]_59 chrX:1914446-1914526 3.56e-01 80 chrII:2734897-2734977 1.65e-01 80 chrX:5852250-5852330 4.96e-01 80 chrII:1949310-1949390 2.25e-02 23_[+5(4.19e-05)]_49 chrII:3743853-3743933 1.29e-02 31_[+2(1.08e-05)]_41 chrII:7775600-7775680 5.96e-01 80 chrV:3410232-3410312 7.03e-03 66_[+1(6.68e-05)]_6 chrII:13636726-13636806 2.02e-01 80 chrII:1661582-1661662 2.05e-01 80 chrIV:15648391-15648471 2.85e-01 80 chrX:1489698-1489778 7.61e-01 80 chrII:1663692-1663772 2.18e-02 36_[+2(1.08e-05)]_36 chrV:17345064-17345144 1.62e-01 33_[+4(8.51e-05)]_39 chrII:3129162-3129242 1.11e-04 8_[+3(2.16e-05)]_10_[+2(4.79e-05)]_\ 33_[+2(2.22e-05)]_5 chrIII:3699446-3699526 7.21e-01 80 chrI:6498910-6498990 9.91e-01 80 chrII:3311413-3311493 4.54e-03 80 chrV:19767847-19767927 2.73e-01 80 chrIII:7812353-7812433 2.09e-01 80 chrX:2219197-2219277 7.38e-02 80 chrM:4363-4443 7.52e-01 80 chrII:10496907-10496987 3.82e-01 80 chrX:403134-403214 1.90e-03 10_[+3(7.08e-05)]_49_[+2(1.08e-05)]_\ 5 chrII:7775019-7775099 5.79e-01 80 chrI:6497544-6497624 1.36e-01 64_[+3(7.08e-05)]_8 chrV:12743841-12743921 6.92e-01 80 chrV:2826988-2827068 4.14e-02 37_[+2(1.08e-05)]_35 chrI:10516807-10516887 7.60e-02 17_[+5(4.19e-05)]_55 chrX:1405684-1405764 2.56e-03 7_[+1(6.68e-05)]_65 chrX:6662117-6662197 3.00e-01 80 chrIII:4654108-4654188 7.67e-01 80 chrIII:4096513-4096593 2.16e-01 80 chrIII:7736170-7736250 8.12e-02 80 chrV:17542502-17542582 1.63e-01 80 chrV:14368897-14368977 5.83e-01 80 chrX:4526622-4526702 7.22e-01 80 chrII:7348215-7348295 9.55e-01 80 chrII:1851890-1851970 8.31e-02 80 chrII:2504583-2504663 2.04e-04 13_[+5(1.03e-05)]_59 chrX:17214602-17214682 1.30e-01 80 chrI:2686367-2686447 6.36e-01 80 chrX:15778145-15778225 9.14e-01 80 chrII:8480574-8480654 6.26e-01 80 chrV:667659-667739 4.77e-01 80 chrV:4187039-4187119 9.34e-03 33_[+3(1.24e-05)]_39 chrX:5348647-5348727 2.75e-01 80 chrX:10668011-10668091 3.35e-01 80 chrX:1939432-1939512 8.73e-01 80 chrV:10210226-10210306 5.87e-02 60_[+3(7.08e-05)]_12 chrV:11820212-11820292 1.29e-01 11_[+4(1.63e-05)]_61 chrV:4029792-4029872 5.28e-01 80 chrX:1961473-1961553 1.12e-01 80 chrIII:7977461-7977541 3.41e-01 80 chrIV:14094359-14094439 3.07e-02 63_[+4(3.72e-05)]_9 chrX:1965000-1965080 7.08e-02 59_[+2(1.08e-05)]_13 chrV:16640602-16640682 8.33e-02 80 chrX:13349930-13350010 2.74e-01 80 chrV:4688728-4688808 1.12e-02 13_[+3(1.24e-05)]_59 chrIV:1891664-1891744 6.83e-04 46_[+1(3.75e-05)]_26 chrIV:15559246-15559326 2.58e-03 14_[+3(9.55e-05)]_58 chrX:4208673-4208753 1.38e-01 80 chrV:8039341-8039421 6.93e-03 80 chrIII:9626778-9626858 2.94e-03 80 chrIII:346185-346265 1.70e-02 51_[+1(7.61e-05)]_21 chrV:18412501-18412581 9.56e-01 80 chrX:1492321-1492401 3.02e-02 80 chrX:1339034-1339114 2.15e-01 80 chrIII:2294890-2294970 3.47e-04 37_[+3(7.08e-05)]_1_[+5(8.52e-05)]_\ 1_[+1(6.68e-05)]_17 chrX:11059957-11060037 1.17e-01 11_[+4(1.63e-05)]_61 chrII:8745051-8745131 3.09e-03 3_[+3(7.08e-05)]_69 chrX:16695359-16695439 7.90e-02 80 chrIII:8833431-8833511 3.05e-01 80 chrI:6499799-6499879 5.92e-01 80 chrV:20383230-20383310 6.18e-04 36_[+5(3.17e-05)]_15_[+1(2.49e-05)]_\ 13 chrV:18780182-18780262 1.05e-01 80 chrX:14137005-14137085 8.31e-02 53_[+4(8.51e-05)]_19 chrX:6088847-6088927 2.30e-01 80 chrX:1011674-1011754 7.39e-01 80 chrI:2875099-2875179 3.11e-01 80 chrX:16930378-16930458 9.44e-02 80 chrIV:201092-201172 9.26e-01 80 chrII:11617400-11617480 7.70e-01 80 chrX:8386687-8386767 8.67e-01 80 chrV:725516-725596 3.95e-01 80 chrV:17317936-17318016 4.81e-01 80 chrIII:5875746-5875826 8.75e-01 80 chrV:13370400-13370480 1.52e-01 80 chrIV:8537744-8537824 2.37e-02 70_[+3(7.08e-05)]_2 chrI:7017835-7017915 3.64e-01 80 chrII:1842997-1843077 1.52e-01 80 chrIII:13724617-13724697 4.46e-01 80 chrX:1445753-1445833 3.27e-01 80 chrX:3113518-3113598 8.52e-01 80 chrIII:5504921-5505001 3.04e-01 80 chrII:5619359-5619439 5.01e-01 80 chrV:6223756-6223836 9.89e-01 80 chrIV:7578245-7578325 9.98e-01 80 chrX:1371021-1371101 8.10e-03 10_[+1(9.28e-05)]_62 chrV:12320600-12320680 2.85e-01 80 chrI:7018906-7018986 6.75e-01 80 chrV:17067846-17067926 2.00e-01 80 chrII:1820070-1820150 2.38e-01 25_[+4(8.51e-05)]_47 chrI:9382488-9382568 2.89e-01 80 chrIII:344452-344532 5.78e-01 80 chrV:16645708-16645788 6.69e-01 80 chrV:6019221-6019301 3.51e-01 80 chrIII:1249327-1249407 1.16e-01 80 chrIII:7466133-7466213 9.44e-01 80 chrI:5416337-5416417 6.85e-04 10_[+3(9.55e-05)]_32_[+1(1.24e-05)]_\ 22 chrX:10756343-10756423 2.96e-01 65_[+4(8.51e-05)]_7 chrX:8945201-8945281 7.33e-02 80 chrII:1664409-1664489 4.69e-02 16_[+2(3.06e-05)]_56 chrII:3000691-3000771 2.87e-03 80 chrV:16040632-16040712 8.88e-03 23_[+2(2.22e-05)]_49 chrIV:7105261-7105341 5.35e-01 80 chrIII:2031370-2031450 5.82e-01 80 chrIII:9770104-9770184 7.58e-01 80 chrX:13730331-13730411 5.67e-01 80 chrV:19047083-19047163 1.31e-02 80 chrM:8669-8749 9.81e-01 80 chrV:6221379-6221459 2.35e-01 54_[+4(8.51e-05)]_18 chrII:1519982-1520062 1.51e-04 [+5(1.80e-05)]_7_[+3(3.09e-05)]_57 chrX:11924325-11924405 1.21e-01 80 chrIV:16167480-16167560 6.44e-01 80 chrV:7434111-7434191 3.45e-01 80 chrM:5266-5346 9.70e-01 80 chrIV:8817354-8817434 8.05e-01 80 chrX:2144263-2144343 3.32e-02 80 chrX:12730229-12730309 1.42e-01 80 chrIII:9814122-9814202 1.37e-01 80 chrV:9338621-9338701 1.94e-01 80 chrI:7080573-7080653 8.84e-01 80 chrII:10499369-10499449 5.69e-01 80 chrII:4859122-4859202 8.83e-01 80 chrIV:5317334-5317414 6.48e-01 80 chrIV:13389398-13389478 2.14e-01 80 chrX:9090694-9090774 3.83e-01 80 chrII:3268024-3268104 5.16e-01 80 chrV:7437608-7437688 3.42e-01 80 chrII:8746662-8746742 9.91e-01 80 chrII:1239755-1239835 1.96e-03 66_[+3(1.24e-05)]_6 chrIII:7737745-7737825 4.38e-01 80 chrM:1829-1909 1.48e-01 80 chrII:7810255-7810335 4.92e-01 80 chrX:1845607-1845687 2.54e-03 15_[+4(1.63e-05)]_1_[+2(3.95e-05)]_\ 48 chrI:7029316-7029396 1.78e-01 80 chrIV:2765248-2765328 1.40e-05 6_[+3(7.08e-05)]_4_[+1(2.49e-05)]_\ 34_[+4(1.63e-05)]_12 chrX:6089994-6090074 8.21e-01 80 chrX:15146523-15146603 3.99e-01 80 chrV:18710100-18710180 9.81e-01 80 chrI:14646245-14646325 3.84e-04 4_[+4(1.63e-05)]_[+2(1.08e-05)]_60 chrI:5103289-5103369 9.59e-01 80 chrX:1798691-1798771 2.47e-01 80 chrIV:7344158-7344238 3.58e-01 80 chrII:13853081-13853161 4.33e-01 80 chrIII:10354933-10355013 2.29e-01 80 chrV:14028265-14028345 8.70e-01 80 chrX:17420036-17420116 1.76e-02 33_[+1(5.03e-05)]_39 chrIV:11081502-11081582 5.09e-03 80 chrII:9211824-9211904 5.53e-01 80 chrIII:7370401-7370481 5.52e-01 80 chrX:4471731-4471811 8.83e-01 80 chrV:14009777-14009857 8.18e-01 80 chrV:11122569-11122649 1.16e-01 80 chrII:11731377-11731457 7.87e-01 80 chrI:6316784-6316864 7.02e-02 57_[+1(5.03e-05)]_15 chrII:10559816-10559896 9.75e-01 80 chrX:13782241-13782321 5.76e-01 80 chrII:9886251-9886331 7.72e-01 80 chrX:16617810-16617890 2.86e-01 80 chrX:6794193-6794273 6.28e-01 80 chrII:1659867-1659947 7.60e-01 80 chrX:4453258-4453338 4.55e-01 80 chrI:13384665-13384745 4.53e-01 80 chrIV:4665421-4665501 4.66e-01 80 chrV:16780614-16780694 1.42e-01 80 chrII:10391960-10392040 6.77e-01 80 chrIII:7534926-7535006 4.92e-01 80 chrV:635800-635880 6.38e-02 54_[+2(2.22e-05)]_18 chrV:17547261-17547341 2.01e-02 40_[+5(1.80e-05)]_32 chrX:432371-432451 7.15e-01 80 chrX:7536687-7536767 8.05e-01 80 chrIV:294907-294987 5.81e-01 80 chrIII:10817866-10817946 1.97e-01 42_[+4(8.51e-05)]_30 chrIII:11627964-11628044 7.02e-01 80 chrIII:2173037-2173117 7.16e-02 80 chrV:6051086-6051166 5.60e-01 80 chrIV:3234435-3234515 2.87e-01 80 chrIII:2433095-2433175 2.27e-01 80 chrIV:5375100-5375180 5.01e-01 80 chrIII:7792390-7792470 2.98e-02 44_[+4(3.72e-05)]_28 chrII:5856309-5856389 9.72e-01 80 chrII:14605199-14605279 1.16e-01 80 chrX:7824980-7825060 3.01e-01 80 chrIII:8450749-8450829 9.83e-01 80 chrX:16619296-16619376 8.42e-01 80 chrIII:5196427-5196507 9.41e-01 80 chrIV:1892773-1892853 2.06e-02 [+5(1.03e-05)]_72 chrX:1799295-1799375 4.87e-01 80 chrV:7775192-7775272 4.88e-01 80 chrIII:12876029-12876109 6.08e-01 80 chrV:13466443-13466523 3.74e-02 22_[+3(1.24e-05)]_50 chrX:6253939-6254019 7.52e-01 80 chrIII:6373874-6373954 9.57e-01 80 chrII:1241064-1241144 9.83e-01 80 chrI:12534568-12534648 1.24e-03 30_[+1(5.03e-05)]_3_[+5(1.03e-05)]_\ 31 chrIII:8794291-8794371 6.02e-02 80 chrIV:10387509-10387589 2.22e-01 80 chrII:5545622-5545702 9.71e-01 80 chrM:3307-3387 5.47e-01 80 chrI:3163801-3163881 9.10e-01 80 chrIV:2604153-2604233 7.55e-01 80 chrX:17545611-17545691 7.91e-01 80 chrIV:2230913-2230993 2.13e-01 80 chrX:7340467-7340547 4.54e-04 61_[+1(3.75e-05)]_11 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************