******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/dsc-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:8001709-8001789 1.0000 80 chrV:11625113-11625193 1.0000 80 chrII:2965374-2965454 1.0000 80 chrX:14797564-14797644 1.0000 80 chrII:4150370-4150450 1.0000 80 chrI:1230153-1230233 1.0000 80 chrV:19802956-19803036 1.0000 80 chrV:11004253-11004333 1.0000 80 chrI:4900444-4900524 1.0000 80 chrIV:73334-73414 1.0000 80 chrIV:2117427-2117507 1.0000 80 chrII:7336703-7336783 1.0000 80 chrX:8571263-8571343 1.0000 80 chrIV:3680125-3680205 1.0000 80 chrV:9105060-9105140 1.0000 80 chrI:5890685-5890765 1.0000 80 chrII:8797836-8797916 1.0000 80 chrIV:9431212-9431292 1.0000 80 chrX:4938096-4938176 1.0000 80 chrV:8556114-8556194 1.0000 80 chrX:8591259-8591339 1.0000 80 chrIII:11669167-11669247 1.0000 80 chrX:13212680-13212760 1.0000 80 chrX:3727988-3728068 1.0000 80 chrII:6033300-6033380 1.0000 80 chrX:7385805-7385885 1.0000 80 chrIII:10025091-10025171 1.0000 80 chrIV:4559116-4559196 1.0000 80 chrV:9183877-9183957 1.0000 80 chrI:7944123-7944203 1.0000 80 chrI:5962172-5962252 1.0000 80 chrV:10286014-10286094 1.0000 80 chrX:6992757-6992837 1.0000 80 chrX:5260548-5260628 1.0000 80 chrV:6645957-6646037 1.0000 80 chrX:11597052-11597132 1.0000 80 chrI:8687224-8687304 1.0000 80 chrV:5304504-5304584 1.0000 80 chrV:7943137-7943217 1.0000 80 chrV:6392923-6393003 1.0000 80 chrX:9167067-9167147 1.0000 80 chrIII:3687355-3687435 1.0000 80 chrI:9052733-9052813 1.0000 80 chrV:1307872-1307952 1.0000 80 chrX:6221253-6221333 1.0000 80 chrIII:7832595-7832675 1.0000 80 chrX:5382917-5382997 1.0000 80 chrX:16117353-16117433 1.0000 80 chrV:10464312-10464392 1.0000 80 chrI:14969254-14969334 1.0000 80 chrX:4296091-4296171 1.0000 80 chrX:4942566-4942646 1.0000 80 chrX:3937628-3937708 1.0000 80 chrX:9719222-9719302 1.0000 80 chrV:8341863-8341943 1.0000 80 chrV:15545417-15545497 1.0000 80 chrIV:3853717-3853797 1.0000 80 chrX:8204634-8204714 1.0000 80 chrI:2105356-2105436 1.0000 80 chrIII:8988224-8988304 1.0000 80 chrII:5341721-5341801 1.0000 80 chrIII:8535604-8535684 1.0000 80 chrIV:10978312-10978392 1.0000 80 chrX:9597485-9597565 1.0000 80 chrV:11811495-11811575 1.0000 80 chrII:6162488-6162568 1.0000 80 chrX:8353688-8353768 1.0000 80 chrI:3644942-3645022 1.0000 80 chrX:12928917-12928997 1.0000 80 chrIV:10064102-10064182 1.0000 80 chrIV:9812539-9812619 1.0000 80 chrIII:4647515-4647595 1.0000 80 chrX:12079987-12080067 1.0000 80 chrV:4868847-4868927 1.0000 80 chrIII:6654074-6654154 1.0000 80 chrIV:11567601-11567681 1.0000 80 chrX:3709927-3710007 1.0000 80 chrIV:81128-81208 1.0000 80 chrX:5618260-5618340 1.0000 80 chrIII:5407206-5407286 1.0000 80 chrX:1116543-1116623 1.0000 80 chrIII:6155924-6156004 1.0000 80 chrII:10680270-10680350 1.0000 80 chrIII:26713-26793 1.0000 80 chrV:10065827-10065907 1.0000 80 chrII:1528643-1528723 1.0000 80 chrIV:8136680-8136760 1.0000 80 chrIII:7835843-7835923 1.0000 80 chrII:6789372-6789452 1.0000 80 chrII:10899161-10899241 1.0000 80 chrIV:10528451-10528531 1.0000 80 chrIII:12847072-12847152 1.0000 80 chrIII:8371738-8371818 1.0000 80 chrX:4653093-4653173 1.0000 80 chrIV:15280378-15280458 1.0000 80 chrIV:5157064-5157144 1.0000 80 chrIV:9481095-9481175 1.0000 80 chrV:6795740-6795820 1.0000 80 chrII:5067126-5067206 1.0000 80 chrI:2017602-2017682 1.0000 80 chrV:4864485-4864565 1.0000 80 chrV:8471073-8471153 1.0000 80 chrV:8168531-8168611 1.0000 80 chrV:6769592-6769672 1.0000 80 chrIV:11569967-11570047 1.0000 80 chrX:6988251-6988331 1.0000 80 chrII:5123529-5123609 1.0000 80 chrV:211530-211610 1.0000 80 chrIII:3569924-3570004 1.0000 80 chrI:3419292-3419372 1.0000 80 chrI:10757529-10757609 1.0000 80 chrII:4906066-4906146 1.0000 80 chrII:3915270-3915350 1.0000 80 chrX:14454632-14454712 1.0000 80 chrV:4459433-4459513 1.0000 80 chrV:6245899-6245979 1.0000 80 chrII:4658405-4658485 1.0000 80 chrII:11317116-11317196 1.0000 80 chrV:2204233-2204313 1.0000 80 chrII:4157960-4158040 1.0000 80 chrII:6810626-6810706 1.0000 80 chrIV:2983734-2983814 1.0000 80 chrII:3918393-3918473 1.0000 80 chrV:8171848-8171928 1.0000 80 chrV:9292066-9292146 1.0000 80 chrII:4166542-4166622 1.0000 80 chrIII:6740220-6740300 1.0000 80 chrIII:6728051-6728131 1.0000 80 chrI:9833095-9833175 1.0000 80 chrV:3821009-3821089 1.0000 80 chrII:7951038-7951118 1.0000 80 chrX:8744351-8744431 1.0000 80 chrV:8169958-8170038 1.0000 80 chrII:2439101-2439181 1.0000 80 chrV:11780965-11781045 1.0000 80 chrV:11464416-11464496 1.0000 80 chrX:845610-845690 1.0000 80 chrIII:10825247-10825327 1.0000 80 chrII:7146436-7146516 1.0000 80 chrX:9658830-9658910 1.0000 80 chrV:12663568-12663648 1.0000 80 chrIV:82453-82533 1.0000 80 chrIV:11893495-11893575 1.0000 80 chrX:5809163-5809243 1.0000 80 chrIII:9082555-9082635 1.0000 80 chrX:1114441-1114521 1.0000 80 chrIV:15816330-15816410 1.0000 80 chrX:7812755-7812835 1.0000 80 chrX:1053121-1053201 1.0000 80 chrX:14191728-14191808 1.0000 80 chrIV:9719472-9719552 1.0000 80 chrX:8947954-8948034 1.0000 80 chrI:4943024-4943104 1.0000 80 chrV:8600124-8600204 1.0000 80 chrV:15663360-15663440 1.0000 80 chrIII:6062013-6062093 1.0000 80 chrIV:10253448-10253528 1.0000 80 chrI:9016318-9016398 1.0000 80 chrV:5447215-5447295 1.0000 80 chrII:8215442-8215522 1.0000 80 chrV:9008420-9008500 1.0000 80 chrX:16530606-16530686 1.0000 80 chrX:8617741-8617821 1.0000 80 chrIV:10489551-10489631 1.0000 80 chrV:9272027-9272107 1.0000 80 chrII:12655982-12656062 1.0000 80 chrV:13161231-13161311 1.0000 80 chrX:8967891-8967971 1.0000 80 chrV:5742385-5742465 1.0000 80 chrX:9654387-9654467 1.0000 80 chrII:129910-129990 1.0000 80 chrV:5887203-5887283 1.0000 80 chrV:10984572-10984652 1.0000 80 chrV:12464183-12464263 1.0000 80 chrX:16650796-16650876 1.0000 80 chrX:6540502-6540582 1.0000 80 chrX:14182679-14182759 1.0000 80 chrIII:11679897-11679977 1.0000 80 chrV:13342495-13342575 1.0000 80 chrV:9485674-9485754 1.0000 80 chrI:3472855-3472935 1.0000 80 chrIV:7420771-7420851 1.0000 80 chrX:15556812-15556892 1.0000 80 chrII:14935568-14935648 1.0000 80 chrIV:4645320-4645400 1.0000 80 chrV:7021916-7021996 1.0000 80 chrV:20555265-20555345 1.0000 80 chrX:6545035-6545115 1.0000 80 chrX:13070590-13070670 1.0000 80 chrX:16958185-16958265 1.0000 80 chrV:11376491-11376571 1.0000 80 chrIII:9972554-9972634 1.0000 80 chrV:5039710-5039790 1.0000 80 chrX:14032254-14032334 1.0000 80 chrX:8609439-8609519 1.0000 80 chrX:15215400-15215480 1.0000 80 chrIV:10724268-10724348 1.0000 80 chrI:7856193-7856273 1.0000 80 chrX:13352645-13352725 1.0000 80 chrII:10376758-10376838 1.0000 80 chrV:5736643-5736723 1.0000 80 chrIV:643643-643723 1.0000 80 chrX:15224282-15224362 1.0000 80 chrII:4163906-4163986 1.0000 80 chrIV:3833909-3833989 1.0000 80 chrV:10241256-10241336 1.0000 80 chrV:13079548-13079628 1.0000 80 chrV:5741395-5741475 1.0000 80 chrV:16835169-16835249 1.0000 80 chrX:8559511-8559591 1.0000 80 chrV:13517200-13517280 1.0000 80 chrIII:7879090-7879170 1.0000 80 chrV:20706650-20706730 1.0000 80 chrV:12751806-12751886 1.0000 80 chrX:14055875-14055955 1.0000 80 chrV:6724829-6724909 1.0000 80 chrV:9798344-9798424 1.0000 80 chrII:5220795-5220875 1.0000 80 chrIV:7452278-7452358 1.0000 80 chrV:11133688-11133768 1.0000 80 chrX:5565622-5565702 1.0000 80 chrI:10761196-10761276 1.0000 80 chrIII:10389764-10389844 1.0000 80 chrX:9660384-9660464 1.0000 80 chrI:10077622-10077702 1.0000 80 chrX:3416208-3416288 1.0000 80 chrX:17181726-17181806 1.0000 80 chrV:16763134-16763214 1.0000 80 chrX:12546972-12547052 1.0000 80 chrX:12512927-12513007 1.0000 80 chrX:7117681-7117761 1.0000 80 chrI:2458736-2458816 1.0000 80 chrX:13353332-13353412 1.0000 80 chrX:13521108-13521188 1.0000 80 chrIV:3252211-3252291 1.0000 80 chrX:17355625-17355705 1.0000 80 chrV:5740483-5740563 1.0000 80 chrIV:11304866-11304946 1.0000 80 chrV:4850639-4850719 1.0000 80 chrX:10258170-10258250 1.0000 80 chrIV:5290017-5290097 1.0000 80 chrX:15390422-15390502 1.0000 80 chrIV:14379333-14379413 1.0000 80 chrIV:4901499-4901579 1.0000 80 chrX:7061739-7061819 1.0000 80 chrX:9662743-9662823 1.0000 80 chrX:4116531-4116611 1.0000 80 chrII:2206245-2206325 1.0000 80 chrX:12724773-12724853 1.0000 80 chrX:4464528-4464608 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_dsc-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/dsc-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.322 C 0.184 G 0.186 T 0.308 Background letter frequencies (from file dataset with add-one prior applied): A 0.322 C 0.184 G 0.187 T 0.308 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF MCABMTGK MEME-1 width = 8 sites = 93 llr = 683 E-value = 2.5e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCABMTGK MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4:a:5::: pos.-specific C 4a:23::2 probability G 2::32:a4 matrix T :::5:a:4 bits 2.4 * * 2.2 * * 2.0 * * 1.7 ** ** Relative 1.5 ** ** Entropy 1.2 ** ** (10.6 bits) 1.0 ** ** 0.7 *** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACATATGT consensus C GC G sequence CG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCABMTGK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:10065827-10065907 65 1.83e-05 TCAATCTGTT CCATCTGG CTCTAAAC chrX:12079987-12080067 34 1.83e-05 CTAATTGGAG CCATATGG GTTTTCGACT chrV:10286014-10286094 8 1.83e-05 ATTAGAA CCATATGG GAAAAAACTT chrV:6724829-6724909 68 2.94e-05 AAAATAGATA CCAGATGG TGCTG chrX:14055875-14055955 47 2.94e-05 ATAATGTAAA CCAGATGG GCTTTTATGA chrV:2204233-2204313 68 2.94e-05 AGGAAGTGGT CCAGCTGG ATAAT chrI:2105356-2105436 52 2.94e-05 AAAATTGACG CCAGATGG TCGAAGAGAA chrII:8215442-8215522 34 4.03e-05 CAAAACATTT CCACATGG TGCATAGAAT chrX:9719222-9719302 8 4.03e-05 ATCGGAA CCACATGG TAGCGTGAGC chrX:9167067-9167147 7 4.03e-05 ATTGTA CCACCTGG AAACAATTTC chrX:10258170-10258250 35 4.71e-05 GAAACAAAAG CCATGTGG CTAGTTTTTT chrIV:643643-643723 43 4.71e-05 TCGTGATAAT CCATGTGG GTGGTGATGT chrX:4464528-4464608 42 1.13e-04 TGAGCAAACG ACATCTGG TTTCTGTTTA chrII:2206245-2206325 11 1.13e-04 AAACTTATAA ACATATGG TAGTTAAGCT chrV:12751806-12751886 56 1.13e-04 GTGGTAGAAC ACATCTGG AGATAATTTG chrV:5039710-5039790 15 1.13e-04 ACGGCGATCG ACATATGG CGGAGGCGCC chrIII:9972554-9972634 2 1.13e-04 G ACATCTGG TTCTGGTTTC chrV:11376491-11376571 59 1.13e-04 GAGAGCTTTT CCAGGTGG GTATTAATGT chrX:16958185-16958265 5 1.13e-04 AAAA ACATCTGG AACCATTCCC chrI:9016318-9016398 41 1.13e-04 GGCTTTCAAA CCATCTGT TTTTCATCGA chrV:11464416-11464496 8 1.13e-04 TCCAAAC ACATCTGG AAGTGATTGA chrIV:2983734-2983814 45 1.13e-04 GAAATGAGTA ACATCTGG AACGAAACTG chrI:3419292-3419372 3 1.13e-04 GG ACATCTGG ATCACATTCC chrI:2017602-2017682 37 1.13e-04 CATCTCAGAG ACATCTGG AATCAATTGC chrIV:15280378-15280458 44 1.13e-04 ATAAACTTGC ACATCTGG TTCCAATTTA chrII:10680270-10680350 55 1.13e-04 AGAAAGGGAC ACATCTGG TTATAATCAT chrV:1307872-1307952 2 1.13e-04 A CCATCTGT GTTGGAAAAA chrV:5304504-5304584 19 1.13e-04 AAAATGAGAA ACATCTGG AAATGAGCGC chrI:8687224-8687304 59 1.13e-04 AGGAAAATTA ACATATGG AAATGATCAA chrX:5260548-5260628 26 1.13e-04 TTTGTGTGCA ACATCTGG TTGAGTTTAG chrIV:14379333-14379413 28 1.55e-04 CTCGTTCCCA ACAGCTGG ATCTCATTTG chrI:10077622-10077702 11 1.55e-04 TAAATCACTT CCAGATGT TCTTTTTCCT chrV:11133688-11133768 73 1.55e-04 CTCATTACTT CCAGATGT chrIII:7879090-7879170 45 1.55e-04 ATAATCGGTG CCAGATGT TGTTTGAGCC chrX:15224282-15224362 47 1.55e-04 CTCATCAAAT CCAGATGT TTTGCATTTC chrX:16530606-16530686 60 1.55e-04 TTGGCCGTAT CCAGATGT CTCTGTATGT chrV:12663568-12663648 39 1.55e-04 TGAATCGAAA CCAGATGT GTTCTGTTAA chrV:3821009-3821089 48 1.55e-04 GGCTAATTTT CCAGATGT TTCAAATAAT chrII:5123529-5123609 26 1.55e-04 CCATTCAATT CCAGATGT TGTTGAGCTG chrIV:10528451-10528531 58 1.55e-04 GTTCAATTTT CCAGATGT CATCCATTTT chrIII:5407206-5407286 28 1.55e-04 CAAAAATCAA CCACGTGG CTTTGATCGG chrV:10464312-10464392 34 1.55e-04 TGAATTGATT CCAGATGT TTGACGCAGC chrV:20555265-20555345 43 1.92e-04 ATAAACAAAA CCACATGT TGCTAATGAA chrX:14182679-14182759 4 1.92e-04 ACC ACACCTGG TTGACATTCA chrIII:9082555-9082635 33 1.92e-04 CAAATGGCTA CCACATGT CGGCTTCACG chrIII:6728051-6728131 62 1.92e-04 TAAAGAAAAA CCACATGT GGTTTTGAAC chrIII:8535604-8535684 8 1.92e-04 GAAGTTT CCACATGT GTTTTCATTT chrX:12724773-12724853 63 2.33e-04 CTTGCCAATC CCATATGC TTGGCTTCTT chrX:5565622-5565702 26 2.33e-04 GACACCACCG CCATGTGT TTCGAGACTC chrV:9292066-9292146 12 2.33e-04 CGCATCAACA ACATGTGG AATTCCTTTT chrIV:11569967-11570047 57 2.33e-04 TTAATTCAGT CCATCTGC TTCACTTTAT chrX:4116531-4116611 28 3.29e-04 AACCAATTTT CCAGCTGC TCATCCTTTA chrV:16835169-16835249 62 3.29e-04 AAAAATAATA GCATATGG AAGAAGTTAG chrII:129910-129990 8 3.29e-04 AACGAGA ACATATGT CACCTCAAAA chrX:1053121-1053201 22 3.29e-04 CTCCTTTCCG ACATCTGT TTCAACCCGA chrV:8171848-8171928 54 3.29e-04 CATGGTGGGA ACATATGT TTTATATTGT chrII:6789372-6789452 37 3.29e-04 GCTCACAAAC ACATATGT TTCCAGTTAA chrIII:6155924-6156004 68 3.29e-04 AAGATGAAAG ACATCTGT TTCTA chrI:5962172-5962252 19 3.29e-04 ACATACACAA ACATCTGT TTTTGAACAA chrX:17181726-17181806 46 3.97e-04 CAAATTGAAA CCACATGC ACAACGCTCA chrV:8600124-8600204 53 3.97e-04 TTGATGAGTT CCACGTGT TGTAAGGTTC chrI:4943024-4943104 21 3.97e-04 GATATCGAAC ACAGATGT TATCGTCTTC chrII:3918393-3918473 29 3.97e-04 AAATCGAAAA CCACGTGT TCTGCATGCA chrX:14454632-14454712 34 3.97e-04 TTGAACAATC ACAGATGT TTAAAAGCTG chrX:4653093-4653173 16 3.97e-04 TAATTGCGCG ACACGTGG TCGTGAGCAT chrII:10899161-10899241 41 3.97e-04 TTTGCAATCA ACACGTGG AATTAATTTC chrV:4868847-4868927 41 3.97e-04 CATATGACAA ACAGATGT TTTAGAGCAC chrX:3937628-3937708 38 3.97e-04 TCAATCGAAA CCACATGC TGTCTCAGTA chrIII:11679897-11679977 52 4.40e-04 CTTAAAAAAT GCACCTGG AGAAGAATCT chrV:13161231-13161311 20 4.40e-04 CTCTTTTGAC ACACATGT TTTTGATCTA chrV:5447215-5447295 48 4.40e-04 GTGATTTGAA ACACATGT CTCTTCATGA chrII:2439101-2439181 73 4.40e-04 CCCTTATTCA ACACATGT chrX:6221253-6221333 44 4.40e-04 CCAGCATGAA GCACATGG AACTAGATAG chrI:7856193-7856273 14 5.08e-04 GATCTCTGTC ACATGTGT TGAATCAAAG chrX:14032254-14032334 49 5.08e-04 CTGCCGAAAC ACATATGC GCATTTCATT chrIV:10489551-10489631 54 5.08e-04 GATCTTCGGA GCATGTGG TTCCGATTGA chrV:4864485-4864565 23 5.08e-04 TTTAATCTTG ACATGTGT TCTGAATCAG chrIV:9481095-9481175 72 5.08e-04 TGACGCAGGT GCATGTGG A chrIII:8371738-8371818 68 5.08e-04 TCAATATGTC ACATGTGT TTGTG chrII:6162488-6162568 20 5.08e-04 CATATCGAAA ACATATGC CAAGAGCCac chrIV:11304866-11304946 29 5.78e-04 ATGATCAGAA ACAGATGC AGTAATCAAA chrX:7117681-7117761 72 5.78e-04 TGGCGCGTTG GCATATGT C chrIV:3853717-3853797 49 5.78e-04 GAAATTGAGA ACAGATGC GGTGAGAGTA chrIII:4647515-4647595 30 6.31e-04 ATCCATTTTG GCAGCTGT TTCTTGTTAG chrI:3644942-3645022 37 6.31e-04 GAGATTAGTT GCAGATGT CGATTGCTTG chrX:16117353-16117433 47 6.31e-04 GATATTGCAA ACACCTGC GAAGTTGAAG chrV:9105060-9105140 20 6.50e-04 TGCATATGAT GCACATGT TTTGAAAAAA chrV:6769592-6769672 4 6.61e-04 AAA ACATGTGC ATTCAATTTC chrX:845610-845690 60 6.98e-04 CAAATTAAAA GCATATGC GGACATTCAT chrX:1116543-1116623 18 6.98e-04 TTCTAATGAT GCATGTGT ATTATAGGTA chrX:13212680-13212760 63 6.98e-04 TTCCAATCAA GCATGTGT TTCTGAACCG chrV:8471073-8471153 16 7.23e-04 GAAATTGTTA GCAGATGC CAAAGAGCAC chrX:16650796-16650876 25 7.56e-04 TTGCTCGGCA GCACGTGC ATTCAAGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCABMTGK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:10065827-10065907 1.8e-05 64_[+1]_8 chrX:12079987-12080067 1.8e-05 33_[+1]_39 chrV:10286014-10286094 1.8e-05 7_[+1]_65 chrV:6724829-6724909 2.9e-05 67_[+1]_5 chrX:14055875-14055955 2.9e-05 46_[+1]_26 chrV:2204233-2204313 2.9e-05 67_[+1]_5 chrI:2105356-2105436 2.9e-05 51_[+1]_21 chrII:8215442-8215522 4e-05 33_[+1]_39 chrX:9719222-9719302 4e-05 7_[+1]_65 chrX:9167067-9167147 4e-05 6_[+1]_66 chrX:10258170-10258250 4.7e-05 34_[+1]_38 chrIV:643643-643723 4.7e-05 42_[+1]_30 chrX:4464528-4464608 0.00011 41_[+1]_31 chrII:2206245-2206325 0.00011 10_[+1]_62 chrV:12751806-12751886 0.00011 55_[+1]_17 chrV:5039710-5039790 0.00011 14_[+1]_58 chrIII:9972554-9972634 0.00011 1_[+1]_71 chrV:11376491-11376571 0.00011 58_[+1]_14 chrX:16958185-16958265 0.00011 4_[+1]_68 chrI:9016318-9016398 0.00011 40_[+1]_32 chrV:11464416-11464496 0.00011 7_[+1]_65 chrIV:2983734-2983814 0.00011 44_[+1]_28 chrI:3419292-3419372 0.00011 2_[+1]_70 chrI:2017602-2017682 0.00011 36_[+1]_36 chrIV:15280378-15280458 0.00011 43_[+1]_29 chrII:10680270-10680350 0.00011 54_[+1]_18 chrV:1307872-1307952 0.00011 1_[+1]_71 chrV:5304504-5304584 0.00011 18_[+1]_54 chrI:8687224-8687304 0.00011 58_[+1]_14 chrX:5260548-5260628 0.00011 25_[+1]_47 chrIV:14379333-14379413 0.00016 27_[+1]_45 chrI:10077622-10077702 0.00016 10_[+1]_62 chrV:11133688-11133768 0.00016 72_[+1] chrIII:7879090-7879170 0.00016 44_[+1]_28 chrX:15224282-15224362 0.00016 46_[+1]_26 chrX:16530606-16530686 0.00016 59_[+1]_13 chrV:12663568-12663648 0.00016 38_[+1]_34 chrV:3821009-3821089 0.00016 47_[+1]_25 chrII:5123529-5123609 0.00016 25_[+1]_47 chrIV:10528451-10528531 0.00016 57_[+1]_15 chrIII:5407206-5407286 0.00016 27_[+1]_45 chrV:10464312-10464392 0.00016 33_[+1]_39 chrV:20555265-20555345 0.00019 42_[+1]_30 chrX:14182679-14182759 0.00019 3_[+1]_69 chrIII:9082555-9082635 0.00019 32_[+1]_40 chrIII:6728051-6728131 0.00019 61_[+1]_11 chrIII:8535604-8535684 0.00019 7_[+1]_65 chrX:12724773-12724853 0.00023 62_[+1]_10 chrX:5565622-5565702 0.00023 25_[+1]_47 chrV:9292066-9292146 0.00023 11_[+1]_61 chrIV:11569967-11570047 0.00023 56_[+1]_16 chrX:4116531-4116611 0.00033 27_[+1]_45 chrV:16835169-16835249 0.00033 61_[+1]_11 chrII:129910-129990 0.00033 7_[+1]_65 chrX:1053121-1053201 0.00033 21_[+1]_51 chrV:8171848-8171928 0.00033 53_[+1]_19 chrII:6789372-6789452 0.00033 36_[+1]_36 chrIII:6155924-6156004 0.00033 67_[+1]_5 chrI:5962172-5962252 0.00033 18_[+1]_54 chrX:17181726-17181806 0.0004 45_[+1]_27 chrV:8600124-8600204 0.0004 52_[+1]_20 chrI:4943024-4943104 0.0004 20_[+1]_52 chrII:3918393-3918473 0.0004 28_[+1]_44 chrX:14454632-14454712 0.0004 33_[+1]_39 chrX:4653093-4653173 0.0004 15_[+1]_57 chrII:10899161-10899241 0.0004 40_[+1]_32 chrV:4868847-4868927 0.0004 40_[+1]_32 chrX:3937628-3937708 0.0004 37_[+1]_35 chrIII:11679897-11679977 0.00044 51_[+1]_21 chrV:13161231-13161311 0.00044 19_[+1]_53 chrV:5447215-5447295 0.00044 47_[+1]_25 chrII:2439101-2439181 0.00044 72_[+1] chrX:6221253-6221333 0.00044 43_[+1]_29 chrI:7856193-7856273 0.00051 13_[+1]_59 chrX:14032254-14032334 0.00051 48_[+1]_24 chrIV:10489551-10489631 0.00051 53_[+1]_19 chrV:4864485-4864565 0.00051 22_[+1]_50 chrIV:9481095-9481175 0.00051 71_[+1]_1 chrIII:8371738-8371818 0.00051 67_[+1]_5 chrII:6162488-6162568 0.00051 19_[+1]_53 chrIV:11304866-11304946 0.00058 28_[+1]_44 chrX:7117681-7117761 0.00058 71_[+1]_1 chrIV:3853717-3853797 0.00058 48_[+1]_24 chrIII:4647515-4647595 0.00063 29_[+1]_43 chrI:3644942-3645022 0.00063 36_[+1]_36 chrX:16117353-16117433 0.00063 46_[+1]_26 chrV:9105060-9105140 0.00065 19_[+1]_53 chrV:6769592-6769672 0.00066 3_[+1]_69 chrX:845610-845690 0.0007 59_[+1]_13 chrX:1116543-1116623 0.0007 17_[+1]_55 chrX:13212680-13212760 0.0007 62_[+1]_10 chrV:8471073-8471153 0.00072 15_[+1]_57 chrX:16650796-16650876 0.00076 24_[+1]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCABMTGK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCABMTGK width=8 seqs=93 chrV:10065827-10065907 ( 65) CCATCTGG 1 chrX:12079987-12080067 ( 34) CCATATGG 1 chrV:10286014-10286094 ( 8) CCATATGG 1 chrV:6724829-6724909 ( 68) CCAGATGG 1 chrX:14055875-14055955 ( 47) CCAGATGG 1 chrV:2204233-2204313 ( 68) CCAGCTGG 1 chrI:2105356-2105436 ( 52) CCAGATGG 1 chrII:8215442-8215522 ( 34) CCACATGG 1 chrX:9719222-9719302 ( 8) CCACATGG 1 chrX:9167067-9167147 ( 7) CCACCTGG 1 chrX:10258170-10258250 ( 35) CCATGTGG 1 chrIV:643643-643723 ( 43) CCATGTGG 1 chrX:4464528-4464608 ( 42) ACATCTGG 1 chrII:2206245-2206325 ( 11) ACATATGG 1 chrV:12751806-12751886 ( 56) ACATCTGG 1 chrV:5039710-5039790 ( 15) ACATATGG 1 chrIII:9972554-9972634 ( 2) ACATCTGG 1 chrV:11376491-11376571 ( 59) CCAGGTGG 1 chrX:16958185-16958265 ( 5) ACATCTGG 1 chrI:9016318-9016398 ( 41) CCATCTGT 1 chrV:11464416-11464496 ( 8) ACATCTGG 1 chrIV:2983734-2983814 ( 45) ACATCTGG 1 chrI:3419292-3419372 ( 3) ACATCTGG 1 chrI:2017602-2017682 ( 37) ACATCTGG 1 chrIV:15280378-15280458 ( 44) ACATCTGG 1 chrII:10680270-10680350 ( 55) ACATCTGG 1 chrV:1307872-1307952 ( 2) CCATCTGT 1 chrV:5304504-5304584 ( 19) ACATCTGG 1 chrI:8687224-8687304 ( 59) ACATATGG 1 chrX:5260548-5260628 ( 26) ACATCTGG 1 chrIV:14379333-14379413 ( 28) ACAGCTGG 1 chrI:10077622-10077702 ( 11) CCAGATGT 1 chrV:11133688-11133768 ( 73) CCAGATGT 1 chrIII:7879090-7879170 ( 45) CCAGATGT 1 chrX:15224282-15224362 ( 47) CCAGATGT 1 chrX:16530606-16530686 ( 60) CCAGATGT 1 chrV:12663568-12663648 ( 39) CCAGATGT 1 chrV:3821009-3821089 ( 48) CCAGATGT 1 chrII:5123529-5123609 ( 26) CCAGATGT 1 chrIV:10528451-10528531 ( 58) CCAGATGT 1 chrIII:5407206-5407286 ( 28) CCACGTGG 1 chrV:10464312-10464392 ( 34) CCAGATGT 1 chrV:20555265-20555345 ( 43) CCACATGT 1 chrX:14182679-14182759 ( 4) ACACCTGG 1 chrIII:9082555-9082635 ( 33) CCACATGT 1 chrIII:6728051-6728131 ( 62) CCACATGT 1 chrIII:8535604-8535684 ( 8) CCACATGT 1 chrX:12724773-12724853 ( 63) CCATATGC 1 chrX:5565622-5565702 ( 26) CCATGTGT 1 chrV:9292066-9292146 ( 12) ACATGTGG 1 chrIV:11569967-11570047 ( 57) CCATCTGC 1 chrX:4116531-4116611 ( 28) CCAGCTGC 1 chrV:16835169-16835249 ( 62) GCATATGG 1 chrII:129910-129990 ( 8) ACATATGT 1 chrX:1053121-1053201 ( 22) ACATCTGT 1 chrV:8171848-8171928 ( 54) ACATATGT 1 chrII:6789372-6789452 ( 37) ACATATGT 1 chrIII:6155924-6156004 ( 68) ACATCTGT 1 chrI:5962172-5962252 ( 19) ACATCTGT 1 chrX:17181726-17181806 ( 46) CCACATGC 1 chrV:8600124-8600204 ( 53) CCACGTGT 1 chrI:4943024-4943104 ( 21) ACAGATGT 1 chrII:3918393-3918473 ( 29) CCACGTGT 1 chrX:14454632-14454712 ( 34) ACAGATGT 1 chrX:4653093-4653173 ( 16) ACACGTGG 1 chrII:10899161-10899241 ( 41) ACACGTGG 1 chrV:4868847-4868927 ( 41) ACAGATGT 1 chrX:3937628-3937708 ( 38) CCACATGC 1 chrIII:11679897-11679977 ( 52) GCACCTGG 1 chrV:13161231-13161311 ( 20) ACACATGT 1 chrV:5447215-5447295 ( 48) ACACATGT 1 chrII:2439101-2439181 ( 73) ACACATGT 1 chrX:6221253-6221333 ( 44) GCACATGG 1 chrI:7856193-7856273 ( 14) ACATGTGT 1 chrX:14032254-14032334 ( 49) ACATATGC 1 chrIV:10489551-10489631 ( 54) GCATGTGG 1 chrV:4864485-4864565 ( 23) ACATGTGT 1 chrIV:9481095-9481175 ( 72) GCATGTGG 1 chrIII:8371738-8371818 ( 68) ACATGTGT 1 chrII:6162488-6162568 ( 20) ACATATGC 1 chrIV:11304866-11304946 ( 29) ACAGATGC 1 chrX:7117681-7117761 ( 72) GCATATGT 1 chrIV:3853717-3853797 ( 49) ACAGATGC 1 chrIII:4647515-4647595 ( 30) GCAGCTGT 1 chrI:3644942-3645022 ( 37) GCAGATGT 1 chrX:16117353-16117433 ( 47) ACACCTGC 1 chrV:9105060-9105140 ( 20) GCACATGT 1 chrV:6769592-6769672 ( 4) ACATGTGC 1 chrX:845610-845690 ( 60) GCATATGC 1 chrX:1116543-1116623 ( 18) GCATGTGT 1 chrX:13212680-13212760 ( 63) GCATGTGT 1 chrV:8471073-8471153 ( 16) GCAGATGC 1 chrX:16650796-16650876 ( 25) GCACGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCABMTGK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.18043 E= 2.5e-031 45 115 -31 -1318 -1318 244 -1318 -1318 164 -1318 -1318 -1318 -1318 43 53 65 65 66 13 -1318 -1318 -1318 -1318 170 -1318 -1318 242 -1318 -1318 -29 117 48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCABMTGK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 93 E= 2.5e-031 0.440860 0.408602 0.150538 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.247312 0.268817 0.483871 0.505376 0.290323 0.204301 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.150538 0.419355 0.430108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCABMTGK MEME-1 regular expression -------------------------------------------------------------------------------- [AC]CA[TGC][ACG]TG[TG] -------------------------------------------------------------------------------- Time 8.89 secs. ******************************************************************************** ******************************************************************************** MOTIF CWWTTTYC MEME-2 width = 8 sites = 43 llr = 347 E-value = 1.4e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWWTTTYC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :52::::: pos.-specific C a:2:::6a probability G :11::::: matrix T :44aaa4: bits 2.4 * * 2.2 * * 2.0 * * 1.7 * *** * Relative 1.5 * *** * Entropy 1.2 * ***** (11.6 bits) 1.0 * ***** 0.7 * ***** 0.5 ** ***** 0.2 ** ***** 0.0 -------- Multilevel CATTTTCC consensus TA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWWTTTYC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:9798344-9798424 24 1.81e-05 ATCCTCCACA CATTTTCC TCATTTTCAA chrIV:15816330-15816410 32 1.81e-05 ATCTCCACTT CATTTTCC TTGAAATTCT chrIV:10064102-10064182 33 1.81e-05 GAGCTCATTT CATTTTCC TAGAAATGTA chrIII:8535604-8535684 21 1.81e-05 CATGTGTTTT CATTTTCC ATTTAATTTC chrI:10077622-10077702 20 3.53e-05 TCCAGATGTT CTTTTTCC TTTTTCTGTG chrV:10241256-10241336 15 3.53e-05 TTGTGATAAA CTTTTTCC AGAAAATCAG chrI:10757529-10757609 42 3.53e-05 ATCTCCTCGA CTTTTTCC TCCAAATCCT chrIII:3569924-3570004 48 3.53e-05 TGAAAAGAGA CTTTTTCC TGATTAGCTC chrI:14969254-14969334 34 3.53e-05 TTCTCAATTT CTTTTTCC TCCTGGCCAA chrX:3727988-3728068 21 3.53e-05 TCTAGTTGCT CTTTTTCC AGGATGCTCA chrX:6540502-6540582 13 4.61e-05 AACACTTTAA CACTTTCC AAGTACTTCG chrX:5382917-5382997 51 4.61e-05 CTATTTACAT CACTTTCC TTGCCACCGC chrV:13517200-13517280 43 8.62e-05 CATATGTTTT CAGTTTCC AATCGGCATT chrIV:10724268-10724348 12 8.62e-05 AAATCCCACT CAATTTCC ACTGAAGAGC chrX:9658830-9658910 69 8.62e-05 CTTGTGACTT CAATTTCC TTAA chrIII:8371738-8371818 38 8.62e-05 CGAAATACGA CAATTTCC GGCAACCTGT chrX:5618260-5618340 43 8.62e-05 GCCGGATTAG CTCTTTCC GAGCATCTCA chrII:2439101-2439181 19 1.16e-04 AAAAATTGCT CATTTTTC ACATTCTGTG chrIV:10528451-10528531 70 1.16e-04 AGATGTCATC CATTTTTC TTC chrIV:10978312-10978392 22 1.16e-04 ACCTGTTTTT CATTTTTC ATCTGATAGT chrX:11597052-11597132 28 1.16e-04 AAACTGATGT CATTTTTC CATTGGGTTA chrIV:73334-73414 72 1.16e-04 ATTTTCTTTT CATTTTTC T chrX:14055875-14055955 65 1.45e-04 GCTTTTATGA CTATTTCC GAATTCGA chrIII:11679897-11679977 68 1.45e-04 GGAGAAGAAT CTATTTCC GATGG chrII:3918393-3918473 63 1.45e-04 TTCGGATTAT CTATTTCC AATCCAGTTA chrV:10065827-10065907 11 1.45e-04 CCTATTTTCC CTATTTCC CAATCCCACA chrV:1307872-1307952 34 1.45e-04 CGTCCCACTT CTGTTTCC AGCTAATTAG chrIII:10825247-10825327 71 1.84e-04 TGTTATTTGT CTTTTTTC CA chrIII:8988224-8988304 1 1.84e-04 . CGTTTTCC TAATCCCTTC chrX:9719222-9719302 59 1.84e-04 TTAGACACAA CGTTTTCC TAACCATCTG chrV:10286014-10286094 63 1.84e-04 TTTAAACCCC CGTTTTCC AATAATGCAT chrV:5887203-5887283 45 2.02e-04 ACAATGTCCA CACTTTTC CTAGAATTGT chrV:8600124-8600204 3 2.02e-04 CG CACTTTTC AACATCTGAT chrIV:82453-82533 72 2.02e-04 CCACAGCATG CACTTTTC A chrX:4938096-4938176 57 2.02e-04 GCTTCTGATC CACTTTTC CTAAATCAAA chrX:16530606-16530686 6 2.76e-04 GGGGG CTCTTTTC TTTCTCATCT chrX:12928917-12928997 37 2.76e-04 CCTTAGTTCT CAGTTTTC GACCAATGAA chrV:11811495-11811575 39 2.76e-04 GAGAATCGCT CAGTTTTC TTCTGAAAAA chrV:8556114-8556194 67 2.76e-04 CATTTTTTCT CAATTTTC ATCGCT chrIV:3680125-3680205 16 2.76e-04 cttggaatta caattttc CATTTCCTGA chrIV:11893495-11893575 33 3.41e-04 TGGATGACGG CGATTTCC AATGAAACAC chrX:4653093-4653173 46 3.41e-04 TGGGTCAATT CTGTTTTC AATCATCATT chrI:8687224-8687304 32 3.41e-04 GAGGAAACAT CTGTTTTC AGTCATAGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWWTTTYC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:9798344-9798424 1.8e-05 23_[+2]_49 chrIV:15816330-15816410 1.8e-05 31_[+2]_41 chrIV:10064102-10064182 1.8e-05 32_[+2]_40 chrIII:8535604-8535684 1.8e-05 20_[+2]_52 chrI:10077622-10077702 3.5e-05 19_[+2]_53 chrV:10241256-10241336 3.5e-05 14_[+2]_58 chrI:10757529-10757609 3.5e-05 41_[+2]_31 chrIII:3569924-3570004 3.5e-05 47_[+2]_25 chrI:14969254-14969334 3.5e-05 33_[+2]_39 chrX:3727988-3728068 3.5e-05 20_[+2]_52 chrX:6540502-6540582 4.6e-05 12_[+2]_60 chrX:5382917-5382997 4.6e-05 50_[+2]_22 chrV:13517200-13517280 8.6e-05 42_[+2]_30 chrIV:10724268-10724348 8.6e-05 11_[+2]_61 chrX:9658830-9658910 8.6e-05 68_[+2]_4 chrIII:8371738-8371818 8.6e-05 37_[+2]_35 chrX:5618260-5618340 8.6e-05 42_[+2]_30 chrII:2439101-2439181 0.00012 18_[+2]_54 chrIV:10528451-10528531 0.00012 69_[+2]_3 chrIV:10978312-10978392 0.00012 21_[+2]_51 chrX:11597052-11597132 0.00012 27_[+2]_45 chrIV:73334-73414 0.00012 71_[+2]_1 chrX:14055875-14055955 0.00015 64_[+2]_8 chrIII:11679897-11679977 0.00015 67_[+2]_5 chrII:3918393-3918473 0.00015 62_[+2]_10 chrV:10065827-10065907 0.00015 10_[+2]_62 chrV:1307872-1307952 0.00015 33_[+2]_39 chrIII:10825247-10825327 0.00018 70_[+2]_2 chrIII:8988224-8988304 0.00018 [+2]_72 chrX:9719222-9719302 0.00018 58_[+2]_14 chrV:10286014-10286094 0.00018 62_[+2]_10 chrV:5887203-5887283 0.0002 44_[+2]_28 chrV:8600124-8600204 0.0002 2_[+2]_70 chrIV:82453-82533 0.0002 71_[+2]_1 chrX:4938096-4938176 0.0002 56_[+2]_16 chrX:16530606-16530686 0.00028 5_[+2]_67 chrX:12928917-12928997 0.00028 36_[+2]_36 chrV:11811495-11811575 0.00028 38_[+2]_34 chrV:8556114-8556194 0.00028 66_[+2]_6 chrIV:3680125-3680205 0.00028 15_[+2]_57 chrIV:11893495-11893575 0.00034 32_[+2]_40 chrX:4653093-4653173 0.00034 45_[+2]_27 chrI:8687224-8687304 0.00034 31_[+2]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWWTTTYC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWWTTTYC width=8 seqs=43 chrV:9798344-9798424 ( 24) CATTTTCC 1 chrIV:15816330-15816410 ( 32) CATTTTCC 1 chrIV:10064102-10064182 ( 33) CATTTTCC 1 chrIII:8535604-8535684 ( 21) CATTTTCC 1 chrI:10077622-10077702 ( 20) CTTTTTCC 1 chrV:10241256-10241336 ( 15) CTTTTTCC 1 chrI:10757529-10757609 ( 42) CTTTTTCC 1 chrIII:3569924-3570004 ( 48) CTTTTTCC 1 chrI:14969254-14969334 ( 34) CTTTTTCC 1 chrX:3727988-3728068 ( 21) CTTTTTCC 1 chrX:6540502-6540582 ( 13) CACTTTCC 1 chrX:5382917-5382997 ( 51) CACTTTCC 1 chrV:13517200-13517280 ( 43) CAGTTTCC 1 chrIV:10724268-10724348 ( 12) CAATTTCC 1 chrX:9658830-9658910 ( 69) CAATTTCC 1 chrIII:8371738-8371818 ( 38) CAATTTCC 1 chrX:5618260-5618340 ( 43) CTCTTTCC 1 chrII:2439101-2439181 ( 19) CATTTTTC 1 chrIV:10528451-10528531 ( 70) CATTTTTC 1 chrIV:10978312-10978392 ( 22) CATTTTTC 1 chrX:11597052-11597132 ( 28) CATTTTTC 1 chrIV:73334-73414 ( 72) CATTTTTC 1 chrX:14055875-14055955 ( 65) CTATTTCC 1 chrIII:11679897-11679977 ( 68) CTATTTCC 1 chrII:3918393-3918473 ( 63) CTATTTCC 1 chrV:10065827-10065907 ( 11) CTATTTCC 1 chrV:1307872-1307952 ( 34) CTGTTTCC 1 chrIII:10825247-10825327 ( 71) CTTTTTTC 1 chrIII:8988224-8988304 ( 1) CGTTTTCC 1 chrX:9719222-9719302 ( 59) CGTTTTCC 1 chrV:10286014-10286094 ( 63) CGTTTTCC 1 chrV:5887203-5887283 ( 45) CACTTTTC 1 chrV:8600124-8600204 ( 3) CACTTTTC 1 chrIV:82453-82533 ( 72) CACTTTTC 1 chrX:4938096-4938176 ( 57) CACTTTTC 1 chrX:16530606-16530686 ( 6) CTCTTTTC 1 chrX:12928917-12928997 ( 37) CAGTTTTC 1 chrV:11811495-11811575 ( 39) CAGTTTTC 1 chrV:8556114-8556194 ( 67) CAATTTTC 1 chrIV:3680125-3680205 ( 16) CAATTTTC 1 chrIV:11893495-11893575 ( 33) CGATTTCC 1 chrX:4653093-4653173 ( 46) CTGTTTTC 1 chrI:8687224-8687304 ( 32) CTGTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWWTTTYC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.73438 E= 1.4e-005 -1207 244 -1207 -1207 73 -1207 -100 27 -47 2 -42 52 -1207 -1207 -1207 170 -1207 -1207 -1207 170 -1207 -1207 -1207 170 -1207 172 -1207 36 -1207 244 -1207 -1207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWWTTTYC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 1.4e-005 0.000000 1.000000 0.000000 0.000000 0.534884 0.000000 0.093023 0.372093 0.232558 0.186047 0.139535 0.441860 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.604651 0.000000 0.395349 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWWTTTYC MEME-2 regular expression -------------------------------------------------------------------------------- C[AT][TA]TTT[CT]C -------------------------------------------------------------------------------- Time 12.67 secs. ******************************************************************************** ******************************************************************************** MOTIF TYGGAAAA MEME-3 width = 8 sites = 39 llr = 313 E-value = 1.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYGGAAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::2:aaa9 pos.-specific C 25:::::1 probability G ::6a:::: matrix T 852::::: bits 2.4 * 2.2 * 2.0 * 1.7 **** Relative 1.5 ***** Entropy 1.2 * ***** (11.6 bits) 1.0 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCGGAAAA consensus CTT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGGAAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:7420771-7420851 26 2.13e-05 CGATTTTCTT TCGGAAAA ACAACCAGAA chrII:8215442-8215522 58 2.13e-05 GAATTATCTC TCGGAAAA TTCCCCTGAA chrII:1528643-1528723 48 2.13e-05 CCCGAAATCC TCGGAAAA AGGCAAAAAA chrX:5618260-5618340 9 2.13e-05 TGGTCACT TCGGAAAA ATATTTTTAA chrV:9105060-9105140 42 2.13e-05 AAAAAAATTC TCGGAAAA AGATCACAGC chrV:11133688-11133768 38 5.70e-05 AAAATACGCC TTGGAAAA GGTCGACTAT chrV:6724829-6724909 36 5.70e-05 GATACATGGT TTGGAAAA CCAATGTAAC chrX:8559511-8559591 29 5.70e-05 TTCCACGTGA TTGGAAAA TATATTTAAA chrII:14935568-14935648 64 5.70e-05 AAAAAAATAC TTGGAAAA ATAAATGGA chrIV:9481095-9481175 33 5.70e-05 GAAGATGATT TTGGAAAA TACACGAGTG chrIII:6155924-6156004 52 5.70e-05 ACTTTACATC TTGGAAAA GATGAAAGAC chrV:4868847-4868927 73 5.70e-05 ATTGAAAATA TTGGAAAA chrI:2105356-2105436 38 5.70e-05 GATGAAATTC TTGGAAAA TTGACGCCAG chrV:1307872-1307952 11 5.70e-05 ACCATCTGTG TTGGAAAA AAATACGTCC chrX:11597052-11597132 65 5.70e-05 AATCTCTTAA TTGGAAAA AGTGGGGG chrII:4150370-4150450 41 5.70e-05 AATTCCCGAT TTGGAAAA ATAAATTAGA chrIV:3252211-3252291 23 6.97e-05 GGGGGATTAT CCGGAAAA GATCAGCGTT chrV:4864485-4864565 67 6.97e-05 AAAAGTAGAT CCGGAAAA TCAATG chrIV:5290017-5290097 61 1.26e-04 AAAGAATTTC CTGGAAAA AAGGATGTAA chrX:12512927-12513007 59 1.26e-04 TTGGTGAAAT TCTGAAAA CTAATATCAT chrV:5741395-5741475 18 1.26e-04 GAATAGGAAA TCTGAaaa atttgaatca chrIV:643643-643723 10 1.26e-04 ATTTAAATT TCTGAAAA AACACCGAAA chrIII:6740220-6740300 4 1.26e-04 CAT CTGGAAAA TGTTTGGAAA chrI:10757529-10757609 69 1.26e-04 TCTGAAATGT TCTGAAAA ATCT chrV:11811495-11811575 48 1.26e-04 TCAGTTTTCT TCTGAAAA AACGTATTCA chrV:15545417-15545497 58 1.26e-04 TCTCTGAAAG CTGGAAAA ATATCGCTAA chrX:7061739-7061819 63 1.63e-04 GAGGGAAAGA TCAGAAAA ATGTGTCTCG chrV:5742385-5742465 28 1.63e-04 ATTCCTTTAG TCAGAAAA AACTTTTGTG chrX:16117353-16117433 1 1.63e-04 . TCAGAAAA GTGTGACCCT chrX:7385805-7385885 62 1.63e-04 TAATCTTCGA TCAGAAAA TTTGTTTGAT chrV:3821009-3821089 14 2.22e-04 GTTTTGCAAA TTTGAAAA TTATCCGAAA chrII:3915270-3915350 64 2.22e-04 TCCGAAACAA TTTGAAAA GGAAAACGT chrX:8947954-8948034 2 2.55e-04 G CCTGAAAA AGAGAAGATG chrIII:5407206-5407286 42 2.55e-04 GTGGCTTTGA TCGGAAAC AAGCTTGCTC chrII:7336703-7336783 1 2.55e-04 . CCTGAAAA CCGTGATTTG chrIV:8136680-8136760 14 3.16e-04 ACCAAACTAT TTAGAAAA ATAAATTGAG chrIV:10724268-10724348 58 3.38e-04 AATCCGTGTT CCAGAAAA CTGAATTCGC chrI:2458736-2458816 68 4.15e-04 ATAAGATTAA TTGGAAAC AGATG chrII:4658405-4658485 43 4.15e-04 AAATGAGTAT TGGGAAAA AAGAAACAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGGAAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:7420771-7420851 2.1e-05 25_[+3]_47 chrII:8215442-8215522 2.1e-05 57_[+3]_15 chrII:1528643-1528723 2.1e-05 47_[+3]_25 chrX:5618260-5618340 2.1e-05 8_[+3]_64 chrV:9105060-9105140 2.1e-05 41_[+3]_31 chrV:11133688-11133768 5.7e-05 37_[+3]_35 chrV:6724829-6724909 5.7e-05 35_[+3]_37 chrX:8559511-8559591 5.7e-05 28_[+3]_44 chrII:14935568-14935648 5.7e-05 63_[+3]_9 chrIV:9481095-9481175 5.7e-05 32_[+3]_40 chrIII:6155924-6156004 5.7e-05 51_[+3]_21 chrV:4868847-4868927 5.7e-05 72_[+3] chrI:2105356-2105436 5.7e-05 37_[+3]_35 chrV:1307872-1307952 5.7e-05 10_[+3]_62 chrX:11597052-11597132 5.7e-05 64_[+3]_8 chrII:4150370-4150450 5.7e-05 40_[+3]_32 chrIV:3252211-3252291 7e-05 22_[+3]_50 chrV:4864485-4864565 7e-05 66_[+3]_6 chrIV:5290017-5290097 0.00013 60_[+3]_12 chrX:12512927-12513007 0.00013 58_[+3]_14 chrV:5741395-5741475 0.00013 17_[+3]_55 chrIV:643643-643723 0.00013 9_[+3]_63 chrIII:6740220-6740300 0.00013 3_[+3]_69 chrI:10757529-10757609 0.00013 68_[+3]_4 chrV:11811495-11811575 0.00013 47_[+3]_25 chrV:15545417-15545497 0.00013 57_[+3]_15 chrX:7061739-7061819 0.00016 62_[+3]_10 chrV:5742385-5742465 0.00016 27_[+3]_45 chrX:16117353-16117433 0.00016 [+3]_72 chrX:7385805-7385885 0.00016 61_[+3]_11 chrV:3821009-3821089 0.00022 13_[+3]_59 chrII:3915270-3915350 0.00022 63_[+3]_9 chrX:8947954-8948034 0.00025 1_[+3]_71 chrIII:5407206-5407286 0.00025 41_[+3]_31 chrII:7336703-7336783 0.00025 [+3]_72 chrIV:8136680-8136760 0.00032 13_[+3]_59 chrIV:10724268-10724348 0.00034 57_[+3]_15 chrI:2458736-2458816 0.00042 67_[+3]_5 chrII:4658405-4658485 0.00042 42_[+3]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGGAAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYGGAAAA width=8 seqs=39 chrIV:7420771-7420851 ( 26) TCGGAAAA 1 chrII:8215442-8215522 ( 58) TCGGAAAA 1 chrII:1528643-1528723 ( 48) TCGGAAAA 1 chrX:5618260-5618340 ( 9) TCGGAAAA 1 chrV:9105060-9105140 ( 42) TCGGAAAA 1 chrV:11133688-11133768 ( 38) TTGGAAAA 1 chrV:6724829-6724909 ( 36) TTGGAAAA 1 chrX:8559511-8559591 ( 29) TTGGAAAA 1 chrII:14935568-14935648 ( 64) TTGGAAAA 1 chrIV:9481095-9481175 ( 33) TTGGAAAA 1 chrIII:6155924-6156004 ( 52) TTGGAAAA 1 chrV:4868847-4868927 ( 73) TTGGAAAA 1 chrI:2105356-2105436 ( 38) TTGGAAAA 1 chrV:1307872-1307952 ( 11) TTGGAAAA 1 chrX:11597052-11597132 ( 65) TTGGAAAA 1 chrII:4150370-4150450 ( 41) TTGGAAAA 1 chrIV:3252211-3252291 ( 23) CCGGAAAA 1 chrV:4864485-4864565 ( 67) CCGGAAAA 1 chrIV:5290017-5290097 ( 61) CTGGAAAA 1 chrX:12512927-12513007 ( 59) TCTGAAAA 1 chrV:5741395-5741475 ( 18) TCTGAAAA 1 chrIV:643643-643723 ( 10) TCTGAAAA 1 chrIII:6740220-6740300 ( 4) CTGGAAAA 1 chrI:10757529-10757609 ( 69) TCTGAAAA 1 chrV:11811495-11811575 ( 48) TCTGAAAA 1 chrV:15545417-15545497 ( 58) CTGGAAAA 1 chrX:7061739-7061819 ( 63) TCAGAAAA 1 chrV:5742385-5742465 ( 28) TCAGAAAA 1 chrX:16117353-16117433 ( 1) TCAGAAAA 1 chrX:7385805-7385885 ( 62) TCAGAAAA 1 chrV:3821009-3821089 ( 14) TTTGAAAA 1 chrII:3915270-3915350 ( 64) TTTGAAAA 1 chrX:8947954-8948034 ( 2) CCTGAAAA 1 chrIII:5407206-5407286 ( 42) TCGGAAAC 1 chrII:7336703-7336783 ( 1) CCTGAAAA 1 chrIV:8136680-8136760 ( 14) TTAGAAAA 1 chrIV:10724268-10724348 ( 58) CCAGAAAA 1 chrI:2458736-2458816 ( 68) TTGGAAAC 1 chrII:4658405-4658485 ( 43) TGGGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGGAAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.78941 E= 1.2e+000 -1193 16 -1193 137 -1193 148 -286 58 -106 -1193 172 -42 -1193 -1193 242 -1193 164 -1193 -1193 -1193 164 -1193 -1193 -1193 164 -1193 -1193 -1193 156 -184 -1193 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGGAAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 1.2e+000 0.000000 0.205128 0.000000 0.794872 0.000000 0.512821 0.025641 0.461538 0.153846 0.000000 0.615385 0.230769 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.948718 0.051282 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGGAAAA MEME-3 regular expression -------------------------------------------------------------------------------- [TC][CT][GT]GAAAA -------------------------------------------------------------------------------- Time 16.14 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCCGTC MEME-4 width = 8 sites = 4 llr = 50 E-value = 5.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCCGTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaaaa3:a probability G :::::8:: matrix T ::::::a: bits 2.4 ***** * 2.2 ***** * 2.0 ***** * 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (18.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCGTC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCGTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:20706650-20706730 4 2.24e-06 AAT CCCCCGTC GACGCTGTTA chrV:5887203-5887283 11 2.24e-06 TTAAGTACCT CCCCCGTC ATGTATCCAG chrII:10680270-10680350 10 2.24e-06 ACCCATCAC CCCCCGTC TTCTTCATTC chrX:14032254-14032334 68 4.43e-06 CATTTCATTT CCCCCCTC TCTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCGTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:20706650-20706730 2.2e-06 3_[+4]_69 chrV:5887203-5887283 2.2e-06 10_[+4]_62 chrII:10680270-10680350 2.2e-06 9_[+4]_63 chrX:14032254-14032334 4.4e-06 67_[+4]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCGTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCCGTC width=8 seqs=4 chrV:20706650-20706730 ( 4) CCCCCGTC 1 chrV:5887203-5887283 ( 11) CCCCCGTC 1 chrII:10680270-10680350 ( 10) CCCCCGTC 1 chrX:14032254-14032334 ( 68) CCCCCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCGTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.8924 E= 5.6e+002 -865 244 -865 -865 -865 244 -865 -865 -865 244 -865 -865 -865 244 -865 -865 -865 244 -865 -865 -865 44 200 -865 -865 -865 -865 170 -865 244 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCGTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 5.6e+002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCGTC MEME-4 regular expression -------------------------------------------------------------------------------- CCCCC[GC]TC -------------------------------------------------------------------------------- Time 19.53 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGCCGA MEME-5 width = 8 sites = 8 llr = 86 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGCCGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C :9a:89:: probability G 8::a:1a: matrix T 31::3::: bits 2.4 ** * 2.2 ** * 2.0 ** ** 1.7 *** *** Relative 1.5 ******** Entropy 1.2 ******** (15.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCGCCGA consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:9016318-9016398 62 2.41e-06 TCATCGAGAT GCCGCCGA GCCAAGAGCC chrX:3727988-3728068 43 2.41e-06 TGCTCATCAA GCCGCCGA TGATCAGGTC chrX:9658830-9658910 47 6.39e-06 AGACAGGTCA TCCGCCGA AGATCTTGTG chrI:3419292-3419372 18 6.39e-06 TGGATCACAT TCCGCCGA TTTTCACATC chrI:10077622-10077702 45 1.04e-05 GTGTTTTTCT GCCGTCGA CTTCCTATGT chrII:4166542-4166622 3 1.04e-05 AA GCCGTCGA AATGATACAT chrIV:11567601-11567681 21 1.29e-05 TGACGAATGA GCCGCGGA TAAACAATGC chrII:6789372-6789452 67 1.69e-05 TGCCGTCAAG GTCGCCGA TTCTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:9016318-9016398 2.4e-06 61_[+5]_11 chrX:3727988-3728068 2.4e-06 42_[+5]_30 chrX:9658830-9658910 6.4e-06 46_[+5]_26 chrI:3419292-3419372 6.4e-06 17_[+5]_55 chrI:10077622-10077702 1e-05 44_[+5]_28 chrII:4166542-4166622 1e-05 2_[+5]_70 chrIV:11567601-11567681 1.3e-05 20_[+5]_52 chrII:6789372-6789452 1.7e-05 66_[+5]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGCCGA width=8 seqs=8 chrI:9016318-9016398 ( 62) GCCGCCGA 1 chrX:3727988-3728068 ( 43) GCCGCCGA 1 chrX:9658830-9658910 ( 47) TCCGCCGA 1 chrI:3419292-3419372 ( 18) TCCGCCGA 1 chrI:10077622-10077702 ( 45) GCCGTCGA 1 chrII:4166542-4166622 ( 3) GCCGTCGA 1 chrIV:11567601-11567681 ( 21) GCCGCGGA 1 chrII:6789372-6789452 ( 67) GTCGCCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8922 E= 1.5e+003 -965 -965 201 -30 -965 225 -965 -130 -965 244 -965 -965 -965 -965 242 -965 -965 203 -965 -30 -965 225 -58 -965 -965 -965 242 -965 164 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.5e+003 0.000000 0.000000 0.750000 0.250000 0.000000 0.875000 0.000000 0.125000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGA MEME-5 regular expression -------------------------------------------------------------------------------- [GT]CCG[CT]CGA -------------------------------------------------------------------------------- Time 22.86 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:8001709-8001789 9.65e-01 80 chrV:11625113-11625193 5.32e-01 80 chrII:2965374-2965454 1.49e-01 80 chrX:14797564-14797644 3.17e-01 80 chrII:4150370-4150450 3.51e-02 40_[+3(5.70e-05)]_32 chrI:1230153-1230233 1.12e-01 80 chrV:19802956-19803036 7.76e-01 80 chrV:11004253-11004333 7.33e-01 80 chrI:4900444-4900524 9.10e-01 80 chrIV:73334-73414 2.13e-01 80 chrIV:2117427-2117507 3.80e-01 80 chrII:7336703-7336783 6.78e-02 80 chrX:8571263-8571343 4.75e-01 80 chrIV:3680125-3680205 1.25e-01 80 chrV:9105060-9105140 8.14e-03 41_[+3(2.13e-05)]_31 chrI:5890685-5890765 3.91e-01 80 chrII:8797836-8797916 8.41e-01 80 chrIV:9431212-9431292 2.12e-02 80 chrX:4938096-4938176 1.45e-01 80 chrV:8556114-8556194 4.79e-02 80 chrX:8591259-8591339 2.36e-01 80 chrIII:11669167-11669247 3.41e-01 80 chrX:13212680-13212760 2.22e-01 80 chrX:3727988-3728068 2.44e-04 20_[+2(3.53e-05)]_14_[+5(2.41e-06)]_\ 30 chrII:6033300-6033380 2.03e-01 80 chrX:7385805-7385885 1.70e-01 80 chrIII:10025091-10025171 5.00e-01 80 chrIV:4559116-4559196 1.51e-01 80 chrV:9183877-9183957 4.92e-01 80 chrI:7944123-7944203 3.60e-01 80 chrI:5962172-5962252 1.33e-01 80 chrV:10286014-10286094 1.74e-05 7_[+1(1.83e-05)]_43_[+4(7.65e-05)]_\ 14 chrX:6992757-6992837 7.44e-01 80 chrX:5260548-5260628 1.12e-01 80 chrV:6645957-6646037 2.55e-01 80 chrX:11597052-11597132 7.07e-03 64_[+3(5.70e-05)]_8 chrI:8687224-8687304 9.61e-04 80 chrV:5304504-5304584 7.75e-04 80 chrV:7943137-7943217 5.78e-01 80 chrV:6392923-6393003 4.44e-01 80 chrX:9167067-9167147 1.07e-02 6_[+1(4.03e-05)]_66 chrIII:3687355-3687435 7.99e-01 80 chrI:9052733-9052813 4.44e-01 80 chrV:1307872-1307952 5.49e-05 10_[+3(5.70e-05)]_62 chrX:6221253-6221333 4.48e-01 80 chrIII:7832595-7832675 6.53e-01 80 chrX:5382917-5382997 2.36e-02 50_[+2(4.61e-05)]_22 chrX:16117353-16117433 6.01e-02 80 chrV:10464312-10464392 5.71e-02 80 chrI:14969254-14969334 2.22e-02 33_[+2(3.53e-05)]_39 chrX:4296091-4296171 3.42e-01 80 chrX:4942566-4942646 1.85e-01 80 chrX:3937628-3937708 2.45e-01 80 chrX:9719222-9719302 9.42e-03 7_[+1(4.03e-05)]_65 chrV:8341863-8341943 9.82e-02 80 chrV:15545417-15545497 1.13e-01 80 chrIV:3853717-3853797 3.36e-01 80 chrX:8204634-8204714 6.00e-01 80 chrI:2105356-2105436 1.94e-03 37_[+3(5.70e-05)]_6_[+1(2.94e-05)]_\ 21 chrIII:8988224-8988304 2.61e-01 80 chrII:5341721-5341801 3.56e-01 80 chrIII:8535604-8535684 1.05e-03 20_[+2(1.81e-05)]_52 chrIV:10978312-10978392 4.69e-04 46_[+5(6.71e-05)]_26 chrX:9597485-9597565 8.30e-01 80 chrV:11811495-11811575 8.69e-03 80 chrII:6162488-6162568 4.81e-02 80 chrX:8353688-8353768 4.21e-01 80 chrI:3644942-3645022 3.19e-01 80 chrX:12928917-12928997 1.29e-01 80 chrIV:10064102-10064182 8.92e-02 32_[+2(1.81e-05)]_40 chrIV:9812539-9812619 6.17e-01 80 chrIII:4647515-4647595 1.49e-01 80 chrX:12079987-12080067 4.75e-02 33_[+1(1.83e-05)]_39 chrV:4868847-4868927 3.36e-02 72_[+3(5.70e-05)] chrIII:6654074-6654154 2.33e-01 80 chrIV:11567601-11567681 7.25e-03 20_[+5(1.29e-05)]_52 chrX:3709927-3710007 7.03e-01 80 chrIV:81128-81208 2.02e-01 80 chrX:5618260-5618340 5.57e-03 8_[+3(2.13e-05)]_26_[+2(8.62e-05)]_\ 30 chrIII:5407206-5407286 4.36e-03 80 chrX:1116543-1116623 1.30e-01 80 chrIII:6155924-6156004 4.97e-03 51_[+3(5.70e-05)]_21 chrII:10680270-10680350 1.38e-03 9_[+4(2.24e-06)]_63 chrIII:26713-26793 1.86e-01 80 chrV:10065827-10065907 3.81e-03 64_[+1(1.83e-05)]_8 chrII:1528643-1528723 7.66e-03 47_[+3(2.13e-05)]_25 chrIV:8136680-8136760 2.71e-01 80 chrIII:7835843-7835923 6.51e-01 80 chrII:6789372-6789452 3.02e-03 66_[+5(1.69e-05)]_6 chrII:10899161-10899241 1.56e-01 80 chrIV:10528451-10528531 1.53e-02 80 chrIII:12847072-12847152 9.08e-01 80 chrIII:8371738-8371818 5.84e-03 37_[+2(8.62e-05)]_35 chrX:4653093-4653173 9.26e-02 80 chrIV:15280378-15280458 1.17e-02 80 chrIV:5157064-5157144 7.16e-01 80 chrIV:9481095-9481175 4.96e-02 32_[+3(5.70e-05)]_40 chrV:6795740-6795820 3.60e-01 80 chrII:5067126-5067206 2.87e-01 80 chrI:2017602-2017682 7.69e-02 80 chrV:4864485-4864565 5.20e-02 66_[+3(6.97e-05)]_6 chrV:8471073-8471153 7.40e-02 80 chrV:8168531-8168611 9.63e-01 80 chrV:6769592-6769672 7.22e-02 80 chrIV:11569967-11570047 2.00e-01 80 chrX:6988251-6988331 3.52e-01 80 chrII:5123529-5123609 2.93e-02 80 chrV:211530-211610 5.26e-01 80 chrIII:3569924-3570004 4.64e-02 47_[+2(3.53e-05)]_25 chrI:3419292-3419372 4.80e-05 17_[+5(6.39e-06)]_55 chrI:10757529-10757609 2.46e-03 41_[+2(3.53e-05)]_31 chrII:4906066-4906146 6.10e-01 80 chrII:3915270-3915350 2.88e-01 80 chrX:14454632-14454712 3.40e-01 80 chrV:4459433-4459513 7.07e-01 80 chrV:6245899-6245979 4.58e-01 80 chrII:4658405-4658485 1.71e-01 80 chrII:11317116-11317196 4.04e-01 80 chrV:2204233-2204313 1.63e-02 67_[+1(2.94e-05)]_5 chrII:4157960-4158040 1.09e-01 80 chrII:6810626-6810706 1.94e-01 80 chrIV:2983734-2983814 5.09e-03 80 chrII:3918393-3918473 2.29e-02 80 chrV:8171848-8171928 5.75e-02 80 chrV:9292066-9292146 3.49e-01 80 chrII:4166542-4166622 1.39e-02 2_[+5(1.04e-05)]_70 chrIII:6740220-6740300 1.15e-01 80 chrIII:6728051-6728131 3.17e-01 80 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chrI:2458736-2458816 7.92e-02 80 chrX:13353332-13353412 7.57e-01 80 chrX:13521108-13521188 8.43e-01 80 chrIV:3252211-3252291 9.46e-02 22_[+3(6.97e-05)]_50 chrX:17355625-17355705 5.13e-01 80 chrV:5740483-5740563 5.70e-01 80 chrIV:11304866-11304946 1.39e-01 80 chrV:4850639-4850719 4.41e-01 80 chrX:10258170-10258250 2.58e-01 34_[+1(4.71e-05)]_38 chrIV:5290017-5290097 4.26e-02 80 chrX:15390422-15390502 8.96e-01 80 chrIV:14379333-14379413 1.78e-03 80 chrIV:4901499-4901579 4.00e-01 80 chrX:7061739-7061819 1.51e-01 80 chrX:9662743-9662823 1.54e-01 80 chrX:4116531-4116611 9.17e-02 80 chrII:2206245-2206325 1.83e-01 80 chrX:12724773-12724853 1.23e-01 80 chrX:4464528-4464608 1.43e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************