******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/drap-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:20455800-20455880 1.0000 80 chrV:15072889-15072969 1.0000 80 chrV:19630316-19630396 1.0000 80 chrV:14507139-14507219 1.0000 80 chrV:14501313-14501393 1.0000 80 chrV:14793199-14793279 1.0000 80 chrV:14504932-14505012 1.0000 80 chrV:17944046-17944126 1.0000 80 chrV:19371933-19372013 1.0000 80 chrV:18573470-18573550 1.0000 80 chrV:17377137-17377217 1.0000 80 chrV:20410438-20410518 1.0000 80 chrV:18674617-18674697 1.0000 80 chrV:14830957-14831037 1.0000 80 chrV:17545558-17545638 1.0000 80 chrV:14491243-14491323 1.0000 80 chrV:14496643-14496723 1.0000 80 chrII:11535638-11535718 1.0000 80 chrV:14508303-14508383 1.0000 80 chrX:5140414-5140494 1.0000 80 chrII:15264763-15264843 1.0000 80 chrII:5667652-5667732 1.0000 80 chrV:18839928-18840008 1.0000 80 chrV:16040634-16040714 1.0000 80 chrX:2879766-2879846 1.0000 80 chrIII:11937064-11937144 1.0000 80 chrV:16774608-16774688 1.0000 80 chrV:18677439-18677519 1.0000 80 chrV:14689489-14689569 1.0000 80 chrX:5818367-5818447 1.0000 80 chrV:16647834-16647914 1.0000 80 chrX:11248220-11248300 1.0000 80 chrV:18619681-18619761 1.0000 80 chrV:18619452-18619532 1.0000 80 chrX:2321883-2321963 1.0000 80 chrIII:9007328-9007408 1.0000 80 chrV:20790060-20790140 1.0000 80 chrX:9102293-9102373 1.0000 80 chrIV:10175189-10175269 1.0000 80 chrV:15610565-15610645 1.0000 80 chrV:19996621-19996701 1.0000 80 chrX:12407489-12407569 1.0000 80 chrV:18490660-18490740 1.0000 80 chrV:18589727-18589807 1.0000 80 chrV:15914864-15914944 1.0000 80 chrV:17981867-17981947 1.0000 80 chrV:13869052-13869132 1.0000 80 chrIV:1905353-1905433 1.0000 80 chrV:20749190-20749270 1.0000 80 chrV:15554034-15554114 1.0000 80 chrV:17749328-17749408 1.0000 80 chrIV:9263928-9264008 1.0000 80 chrV:18479423-18479503 1.0000 80 chrI:3861648-3861728 1.0000 80 chrV:17917785-17917865 1.0000 80 chrV:19513805-19513885 1.0000 80 chrX:3914448-3914528 1.0000 80 chrV:15065273-15065353 1.0000 80 chrV:19430584-19430664 1.0000 80 chrI:433574-433654 1.0000 80 chrIII:445727-445807 1.0000 80 chrI:6153669-6153749 1.0000 80 chrV:19082528-19082608 1.0000 80 chrV:15505263-15505343 1.0000 80 chrI:6154508-6154588 1.0000 80 chrII:4130436-4130516 1.0000 80 chrV:17538583-17538663 1.0000 80 chrIV:4454540-4454620 1.0000 80 chrX:16602559-16602639 1.0000 80 chrII:10202477-10202557 1.0000 80 chrV:15029036-15029116 1.0000 80 chrV:14876399-14876479 1.0000 80 chrV:5284760-5284840 1.0000 80 chrX:2552374-2552454 1.0000 80 chrX:2885473-2885553 1.0000 80 chrX:6625490-6625570 1.0000 80 chrV:16699926-16700006 1.0000 80 chrII:8748203-8748283 1.0000 80 chrIV:175860-175940 1.0000 80 chrV:15547849-15547929 1.0000 80 chrV:14506025-14506105 1.0000 80 chrX:16771076-16771156 1.0000 80 chrV:19521315-19521395 1.0000 80 chrV:14499568-14499648 1.0000 80 chrV:19611829-19611909 1.0000 80 chrX:13948291-13948371 1.0000 80 chrV:14524347-14524427 1.0000 80 chrI:4320821-4320901 1.0000 80 chrV:14352177-14352257 1.0000 80 chrIII:8127116-8127196 1.0000 80 chrV:14320937-14321017 1.0000 80 chrV:20456002-20456082 1.0000 80 chrV:14423404-14423484 1.0000 80 chrV:14855770-14855850 1.0000 80 chrV:8779294-8779374 1.0000 80 chrIV:3521918-3521998 1.0000 80 chrII:10065609-10065689 1.0000 80 chrV:4960322-4960402 1.0000 80 chrIII:13717695-13717775 1.0000 80 chrX:760618-760698 1.0000 80 chrV:14425266-14425346 1.0000 80 chrIV:3337374-3337454 1.0000 80 chrX:2368565-2368645 1.0000 80 chrV:20399798-20399878 1.0000 80 chrV:19622517-19622597 1.0000 80 chrV:14415786-14415866 1.0000 80 chrX:2907739-2907819 1.0000 80 chrV:16622142-16622222 1.0000 80 chrI:14533039-14533119 1.0000 80 chrIII:13032608-13032688 1.0000 80 chrX:7269097-7269177 1.0000 80 chrIV:13023045-13023125 1.0000 80 chrIV:10817190-10817270 1.0000 80 chrX:14229663-14229743 1.0000 80 chrV:20124540-20124620 1.0000 80 chrV:19622721-19622801 1.0000 80 chrX:16144049-16144129 1.0000 80 chrX:6806669-6806749 1.0000 80 chrIV:1904212-1904292 1.0000 80 chrV:14795073-14795153 1.0000 80 chrV:19965730-19965810 1.0000 80 chrV:20587336-20587416 1.0000 80 chrI:7543615-7543695 1.0000 80 chrIII:13779523-13779603 1.0000 80 chrV:18583958-18584038 1.0000 80 chrI:1559316-1559396 1.0000 80 chrV:18178393-18178473 1.0000 80 chrX:10597789-10597869 1.0000 80 chrI:4745410-4745490 1.0000 80 chrX:871222-871302 1.0000 80 chrV:20794002-20794082 1.0000 80 chrX:3969501-3969581 1.0000 80 chrV:9247569-9247649 1.0000 80 chrX:16663301-16663381 1.0000 80 chrV:16026773-16026853 1.0000 80 chrII:3959857-3959937 1.0000 80 chrV:19589137-19589217 1.0000 80 chrX:5816446-5816526 1.0000 80 chrV:19050653-19050733 1.0000 80 chrV:17918714-17918794 1.0000 80 chrX:4616989-4617069 1.0000 80 chrX:4151502-4151582 1.0000 80 chrV:19343635-19343715 1.0000 80 chrX:7460684-7460764 1.0000 80 chrIV:1981092-1981172 1.0000 80 chrV:19962591-19962671 1.0000 80 chrV:7978909-7978989 1.0000 80 chrIII:13721267-13721347 1.0000 80 chrX:1082031-1082111 1.0000 80 chrIV:128670-128750 1.0000 80 chrX:11257237-11257317 1.0000 80 chrIV:7488073-7488153 1.0000 80 chrIII:3500000-3500080 1.0000 80 chrI:11092135-11092215 1.0000 80 chrII:1266451-1266531 1.0000 80 chrX:12693317-12693397 1.0000 80 chrX:8818128-8818208 1.0000 80 chrV:18596446-18596526 1.0000 80 chrV:14446818-14446898 1.0000 80 chrIV:1377825-1377905 1.0000 80 chrIV:9772249-9772329 1.0000 80 chrX:3994569-3994649 1.0000 80 chrII:4977199-4977279 1.0000 80 chrIV:3807838-3807918 1.0000 80 chrIII:4626241-4626321 1.0000 80 chrV:17802304-17802384 1.0000 80 chrI:4032528-4032608 1.0000 80 chrII:6834008-6834088 1.0000 80 chrX:14636854-14636934 1.0000 80 chrV:19636142-19636222 1.0000 80 chrIII:2535290-2535370 1.0000 80 chrI:8100248-8100328 1.0000 80 chrV:4810817-4810897 1.0000 80 chrX:5821022-5821102 1.0000 80 chrV:16752350-16752430 1.0000 80 chrX:10900259-10900339 1.0000 80 chrII:9013513-9013593 1.0000 80 chrX:8911192-8911272 1.0000 80 chrIII:3620779-3620859 1.0000 80 chrX:4158005-4158085 1.0000 80 chrV:18676412-18676492 1.0000 80 chrIV:3399204-3399284 1.0000 80 chrV:20383172-20383252 1.0000 80 chrV:17324084-17324164 1.0000 80 chrI:6757214-6757294 1.0000 80 chrI:1719176-1719256 1.0000 80 chrV:19001188-19001268 1.0000 80 chrIV:1824245-1824325 1.0000 80 chrV:19723045-19723125 1.0000 80 chrII:3999710-3999790 1.0000 80 chrX:8201358-8201438 1.0000 80 chrX:8156100-8156180 1.0000 80 chrV:17142704-17142784 1.0000 80 chrI:12225454-12225534 1.0000 80 chrI:14731715-14731795 1.0000 80 chrIV:8334138-8334218 1.0000 80 chrV:19148631-19148711 1.0000 80 chrV:14468571-14468651 1.0000 80 chrIII:5769877-5769957 1.0000 80 chrIII:4428944-4429024 1.0000 80 chrIII:11355891-11355971 1.0000 80 chrI:5637876-5637956 1.0000 80 chrI:7715672-7715752 1.0000 80 chrV:18678547-18678627 1.0000 80 chrV:8785668-8785748 1.0000 80 chrIV:2083416-2083496 1.0000 80 chrII:13785775-13785855 1.0000 80 chrI:9855575-9855655 1.0000 80 chrV:19495313-19495393 1.0000 80 chrX:2043308-2043388 1.0000 80 chrV:20359145-20359225 1.0000 80 chrX:10396877-10396957 1.0000 80 chrV:19614341-19614421 1.0000 80 chrIII:6342220-6342300 1.0000 80 chrV:20005952-20006032 1.0000 80 chrII:3267912-3267992 1.0000 80 chrX:5764064-5764144 1.0000 80 chrIII:4514091-4514171 1.0000 80 chrIII:10432250-10432330 1.0000 80 chrX:16150325-16150405 1.0000 80 chrV:14833363-14833443 1.0000 80 chrI:8135882-8135962 1.0000 80 chrIII:13225184-13225264 1.0000 80 chrII:5293386-5293466 1.0000 80 chrI:6151657-6151737 1.0000 80 chrX:13584117-13584197 1.0000 80 chrX:14504320-14504400 1.0000 80 chrIV:9316201-9316281 1.0000 80 chrX:15347871-15347951 1.0000 80 chrV:15466259-15466339 1.0000 80 chrIII:9112629-9112709 1.0000 80 chrX:4576492-4576572 1.0000 80 chrX:601480-601560 1.0000 80 chrI:9176226-9176306 1.0000 80 chrV:9293547-9293627 1.0000 80 chrX:12179136-12179216 1.0000 80 chrI:2299665-2299745 1.0000 80 chrIII:13160783-13160863 1.0000 80 chrIV:393559-393639 1.0000 80 chrX:5995748-5995828 1.0000 80 chrV:15001609-15001689 1.0000 80 chrX:5368300-5368380 1.0000 80 chrX:15747997-15748077 1.0000 80 chrV:18990369-18990449 1.0000 80 chrX:10623214-10623294 1.0000 80 chrII:15253966-15254046 1.0000 80 chrI:9734070-9734150 1.0000 80 chrV:18430813-18430893 1.0000 80 chrI:6136539-6136619 1.0000 80 chrX:3472471-3472551 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_drap-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/drap-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.242 C 0.263 G 0.254 T 0.241 Background letter frequencies (from file dataset with add-one prior applied): A 0.242 C 0.263 G 0.254 T 0.241 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-1 width = 8 sites = 30 llr = 274 E-value = 2.4e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::::: pos.-specific C ::::1::2 probability G :9:a1a:8 matrix T 91a:8:a1 bits 2.1 * ** 1.8 ** ** 1.6 * ** ** 1.4 **** ** Relative 1.2 ******* Entropy 1.0 ******** (13.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5368300-5368380 53 1.40e-05 TTCACTAGTA TGTGTGTG CATTTATAGC chrI:6151657-6151737 42 1.40e-05 TCCAATATAC TGTGTGTG TATGCGGCTG chrX:16150325-16150405 37 1.40e-05 ATGTACAgtg tgtgtgtg agtgtgtgtg chrX:2043308-2043388 4 1.40e-05 gtg tgtgtgtg tgtgtgtgtg chrIV:2083416-2083496 41 1.40e-05 tgtatgtatt tgtgtgtg tgtgtgAGGC chrIV:1824245-1824325 64 1.40e-05 ACACGAGATG TGTGTGTG TGGATGACG chrX:4616989-4617069 52 1.40e-05 GAGAGGGGTG TGTGTGTG CAGCCACAGC chrV:19589137-19589217 23 1.40e-05 tgtgtgtgtg tgtgtgtg CACACGCAAC chrV:18583958-18584038 43 1.40e-05 TCAAAAAgtg tgtgtgtg tgtgtgtgCT chrX:16144049-16144129 25 1.40e-05 Agtgtgtgtg tgtgtgtg tgtctatgcg chrIII:13717695-13717775 51 1.40e-05 GGTTGgtgtg tgtgtgtg tgtctgtgtg chrII:4130436-4130516 11 1.40e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtT chrIII:445727-445807 28 1.40e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chrV:14689489-14689569 11 1.40e-05 TCTTCAGTTT TGTGTGTG TCAGCGGCAT chrX:5764064-5764144 62 2.86e-05 GGAGCGTACT TGTGTGTC AATGGACACT chrI:9855575-9855655 42 2.86e-05 TCTGCCTGAC TGTGTGTC CTTGCCAGCT chrII:10065609-10065689 53 2.86e-05 CTCCCGTCTC TGTGTGTC TAATGCGAGA chrI:9176226-9176306 64 4.19e-05 GGTTAGCAGA TTTGTGTG CCACCCACA chrV:20005952-20006032 36 4.19e-05 CTCTCTTGTT TTTGTGTG CTCTCTAGCA chrIII:9112629-9112709 41 5.67e-05 AGGGTGGAAA TGTGGGTG ACCAAGCATT chrX:7460684-7460764 11 5.67e-05 CACAGACAAC TGTGGGTG GGCGGGTCTA chrX:8156100-8156180 56 7.00e-05 TTGTATAGGC TGTGTGTT CTCCTATTAC chrX:16771076-16771156 35 7.00e-05 CTGTAAGAAG TGTGTGTT AGGGTCGACA chrX:601480-601560 49 9.94e-05 GGAATAAAAG TGTGCGTG CAAAACAAGG chrV:14524347-14524427 41 9.94e-05 TTTGCAAGAT TGTGCGTG CTCGCGGTTG chrV:15029036-15029116 69 9.94e-05 ACATTTGGGA AGTGTGTG GTCA chrX:16602559-16602639 5 1.13e-04 TGGT TGTTTGTG AAATGATCCA chrV:19636142-19636222 7 1.27e-04 AATTCG TTTGTGTC CCCCCGTTCC chrX:15747997-15748077 64 1.56e-04 TGATTCTCGC TTTGGGTG CGACAAGTC chrI:6153669-6153749 28 1.99e-04 CGATGCAAAT AGTGTGTC GATCAGCGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5368300-5368380 1.4e-05 52_[+1]_20 chrI:6151657-6151737 1.4e-05 41_[+1]_31 chrX:16150325-16150405 1.4e-05 36_[+1]_36 chrX:2043308-2043388 1.4e-05 3_[+1]_69 chrIV:2083416-2083496 1.4e-05 40_[+1]_32 chrIV:1824245-1824325 1.4e-05 63_[+1]_9 chrX:4616989-4617069 1.4e-05 51_[+1]_21 chrV:19589137-19589217 1.4e-05 22_[+1]_50 chrV:18583958-18584038 1.4e-05 42_[+1]_30 chrX:16144049-16144129 1.4e-05 24_[+1]_48 chrIII:13717695-13717775 1.4e-05 50_[+1]_22 chrII:4130436-4130516 1.4e-05 10_[+1]_62 chrIII:445727-445807 1.4e-05 27_[+1]_45 chrV:14689489-14689569 1.4e-05 10_[+1]_62 chrX:5764064-5764144 2.9e-05 61_[+1]_11 chrI:9855575-9855655 2.9e-05 41_[+1]_31 chrII:10065609-10065689 2.9e-05 52_[+1]_20 chrI:9176226-9176306 4.2e-05 63_[+1]_9 chrV:20005952-20006032 4.2e-05 35_[+1]_37 chrIII:9112629-9112709 5.7e-05 40_[+1]_32 chrX:7460684-7460764 5.7e-05 10_[+1]_62 chrX:8156100-8156180 7e-05 55_[+1]_17 chrX:16771076-16771156 7e-05 34_[+1]_38 chrX:601480-601560 9.9e-05 48_[+1]_24 chrV:14524347-14524427 9.9e-05 40_[+1]_32 chrV:15029036-15029116 9.9e-05 68_[+1]_4 chrX:16602559-16602639 0.00011 4_[+1]_68 chrV:19636142-19636222 0.00013 6_[+1]_66 chrX:15747997-15748077 0.00016 63_[+1]_9 chrI:6153669-6153749 0.0002 27_[+1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=30 chrX:5368300-5368380 ( 53) TGTGTGTG 1 chrI:6151657-6151737 ( 42) TGTGTGTG 1 chrX:16150325-16150405 ( 37) TGTGTGTG 1 chrX:2043308-2043388 ( 4) TGTGTGTG 1 chrIV:2083416-2083496 ( 41) TGTGTGTG 1 chrIV:1824245-1824325 ( 64) TGTGTGTG 1 chrX:4616989-4617069 ( 52) TGTGTGTG 1 chrV:19589137-19589217 ( 23) TGTGTGTG 1 chrV:18583958-18584038 ( 43) TGTGTGTG 1 chrX:16144049-16144129 ( 25) TGTGTGTG 1 chrIII:13717695-13717775 ( 51) TGTGTGTG 1 chrII:4130436-4130516 ( 11) TGTGTGTG 1 chrIII:445727-445807 ( 28) TGTGTGTG 1 chrV:14689489-14689569 ( 11) TGTGTGTG 1 chrX:5764064-5764144 ( 62) TGTGTGTC 1 chrI:9855575-9855655 ( 42) TGTGTGTC 1 chrII:10065609-10065689 ( 53) TGTGTGTC 1 chrI:9176226-9176306 ( 64) TTTGTGTG 1 chrV:20005952-20006032 ( 36) TTTGTGTG 1 chrIII:9112629-9112709 ( 41) TGTGGGTG 1 chrX:7460684-7460764 ( 11) TGTGGGTG 1 chrX:8156100-8156180 ( 56) TGTGTGTT 1 chrX:16771076-16771156 ( 35) TGTGTGTT 1 chrX:601480-601560 ( 49) TGTGCGTG 1 chrV:14524347-14524427 ( 41) TGTGCGTG 1 chrV:15029036-15029116 ( 69) AGTGTGTG 1 chrX:16602559-16602639 ( 5) TGTTTGTG 1 chrV:19636142-19636222 ( 7) TTTGTGTC 1 chrX:15747997-15748077 ( 64) TTTGGGTG 1 chrI:6153669-6153749 ( 28) AGTGTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.229 E= 2.4e-009 -186 -1155 -1155 196 -1155 -1155 177 -85 -1155 -1155 -1155 205 -1155 -1155 193 -285 -1155 -198 -134 179 -1155 -1155 198 -1155 -1155 -1155 -1155 205 -1155 -66 159 -185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.4e-009 0.066667 0.000000 0.000000 0.933333 0.000000 0.000000 0.866667 0.133333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.966667 0.033333 0.000000 0.066667 0.100000 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.766667 0.066667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 regular expression -------------------------------------------------------------------------------- TGTGTGTG -------------------------------------------------------------------------------- Time 8.26 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-2 width = 8 sites = 43 llr = 337 E-value = 2.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :9:8:917 pos.-specific C a19:9:9: probability G ::::111: matrix T ::12:::3 bits 2.1 1.8 * 1.6 * * 1.4 *** ** Relative 1.2 ******** Entropy 1.0 ******** (11.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14504320-14504400 29 1.64e-05 CACACACACT CACACACA TACACAGATT chrIV:2083416-2083496 4 1.64e-05 aca cacacaca cacCGCAATA chrIII:3620779-3620859 25 1.64e-05 TACTCCAAGA CACACACA CAGAGGACGG chrX:14636854-14636934 72 1.64e-05 GGCCAGTTTC cacacaca c chrIII:4626241-4626321 69 1.64e-05 accacacaca cacacaca caca chrX:2368565-2368645 73 1.64e-05 CGCTCTTaca cacacaca chrIV:10175189-10175269 54 1.64e-05 GGCGGCCGCA CACACACA TAGGGACGGG chrX:2321883-2321963 52 1.64e-05 cacacacaca cacacaca cacacGTGGT chrV:17545558-17545638 31 1.64e-05 cacacacaca cacacaca gcggtgcgcg chrV:15072889-15072969 50 1.64e-05 cacacacaca cacacaca cacaTACCCC chrX:10396877-10396957 39 3.28e-05 TGACAAATAC CACACACT ATTCTTGGTA chrV:20383172-20383252 50 3.28e-05 CTCATCTTCC CACACACT ATCTCCTCCC chrI:7543615-7543695 12 3.28e-05 acacaaaacg cacacact cactctctcc chrX:2885473-2885553 43 3.28e-05 CACACATACG CACACACT GGCCGAATGG chrX:2879766-2879846 21 3.28e-05 CTGCATCTCG CACACACT CACATTATCG chrV:7978909-7978989 54 4.91e-05 CGCTTATGCG CACTCACA GTAGTAAGAG chrV:19622721-19622801 27 4.91e-05 cactcacgca cactcacA GACACATGAG chrV:14496643-14496723 54 4.91e-05 TTTGTGCGAA CACTCACA AGACATCAGT chrI:7715672-7715752 21 6.41e-05 GCGTATTCAA CATACACA TATGCCAACC chrV:14491243-14491323 4 6.41e-05 aca catacaca cCGCATTCAA chrI:1719176-1719256 52 9.62e-05 TTCACAATGG CACTCACT GCTGCTGTGC chrX:7460684-7460764 1 9.62e-05 . CACAGACA ACTGTGGGTG chrX:10597789-10597869 9 9.62e-05 ATAGGGTC CACTCACT GACCCTCTGC chrII:4130436-4130516 36 9.62e-05 gtTGTCCCAT CACAGACA AATCAGAGAG chrIII:4514091-4514171 65 1.27e-04 CGAGCAAGAG CACACAGA GAAAAAGA chrV:9247569-9247649 12 1.27e-04 GCTATGGGTG CACACAGA CGCTTCCCTA chrV:20455800-20455880 19 1.27e-04 TCTCATACAT CACACAAA TATAGTGACG chrIV:393559-393639 38 1.42e-04 ctagcaggct catacact ttcacgcgca chrII:11535638-11535718 32 1.42e-04 AATGAGCCAA CATACACT AGGCCCTGTT chrI:6151657-6151737 21 1.77e-04 TTATGCACAA CACACGCA CTATCCAATA chrV:20359145-20359225 6 1.77e-04 ACAGG CCCACACA ACGCCTAGTT chrV:19589137-19589217 31 1.77e-04 tgtgtgtgtg CACACGCA ACCAAACGGG chrV:14524347-14524427 72 2.09e-04 GCAAACACGC CGCACACA C chrX:5995748-5995828 40 2.56e-04 CCCTCGAATG CACACAGT GCGGCGGGCC chrI:9176226-9176306 73 3.25e-04 ATTTGTGTGC CACCCACA chrIII:11937064-11937144 31 3.40e-04 GAGAGCCGGG GACACACA ACGAGAGATC chrV:14501313-14501393 69 3.71e-04 CCCTCTCCCT CACTCAAA CAGC chrIII:11355891-11355971 40 4.18e-04 ACCTTCATGA CATAGACA GGTGTTCAAG chrX:3914448-3914528 67 4.18e-04 ACCGAAGTAC CGCACACT ACCACT chrV:14499568-14499648 24 4.53e-04 GCCATCGGAG CCCTCACA CCACGTTCGT chrI:433574-433654 55 5.13e-04 CCCAATAAAT CCTACACA CCGTTTGAAT chrV:15466259-15466339 53 6.56e-04 ctaacaccaa cactcaaT GCCAGCCAAC chrI:6153669-6153749 71 7.39e-04 ATTGTCATCG CACAGGCA TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14504320-14504400 1.6e-05 28_[+2]_44 chrIV:2083416-2083496 1.6e-05 3_[+2]_69 chrIII:3620779-3620859 1.6e-05 24_[+2]_48 chrX:14636854-14636934 1.6e-05 71_[+2]_1 chrIII:4626241-4626321 1.6e-05 68_[+2]_4 chrX:2368565-2368645 1.6e-05 72_[+2] chrIV:10175189-10175269 1.6e-05 53_[+2]_19 chrX:2321883-2321963 1.6e-05 51_[+2]_21 chrV:17545558-17545638 1.6e-05 30_[+2]_42 chrV:15072889-15072969 1.6e-05 49_[+2]_23 chrX:10396877-10396957 3.3e-05 38_[+2]_34 chrV:20383172-20383252 3.3e-05 49_[+2]_23 chrI:7543615-7543695 3.3e-05 11_[+2]_61 chrX:2885473-2885553 3.3e-05 42_[+2]_30 chrX:2879766-2879846 3.3e-05 20_[+2]_52 chrV:7978909-7978989 4.9e-05 53_[+2]_19 chrV:19622721-19622801 4.9e-05 26_[+2]_46 chrV:14496643-14496723 4.9e-05 53_[+2]_19 chrI:7715672-7715752 6.4e-05 20_[+2]_52 chrV:14491243-14491323 6.4e-05 3_[+2]_69 chrI:1719176-1719256 9.6e-05 51_[+2]_21 chrX:7460684-7460764 9.6e-05 [+2]_72 chrX:10597789-10597869 9.6e-05 8_[+2]_64 chrII:4130436-4130516 9.6e-05 35_[+2]_37 chrIII:4514091-4514171 0.00013 64_[+2]_8 chrV:9247569-9247649 0.00013 11_[+2]_61 chrV:20455800-20455880 0.00013 18_[+2]_54 chrIV:393559-393639 0.00014 37_[+2]_35 chrII:11535638-11535718 0.00014 31_[+2]_41 chrI:6151657-6151737 0.00018 20_[+2]_52 chrV:20359145-20359225 0.00018 5_[+2]_67 chrV:19589137-19589217 0.00018 30_[+2]_42 chrV:14524347-14524427 0.00021 71_[+2]_1 chrX:5995748-5995828 0.00026 39_[+2]_33 chrI:9176226-9176306 0.00032 72_[+2] chrIII:11937064-11937144 0.00034 30_[+2]_42 chrV:14501313-14501393 0.00037 68_[+2]_4 chrIII:11355891-11355971 0.00042 39_[+2]_33 chrX:3914448-3914528 0.00042 66_[+2]_6 chrV:14499568-14499648 0.00045 23_[+2]_49 chrI:433574-433654 0.00051 54_[+2]_18 chrV:15466259-15466339 0.00066 52_[+2]_20 chrI:6153669-6153749 0.00074 70_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=43 chrX:14504320-14504400 ( 29) CACACACA 1 chrIV:2083416-2083496 ( 4) CACACACA 1 chrIII:3620779-3620859 ( 25) CACACACA 1 chrX:14636854-14636934 ( 72) CACACACA 1 chrIII:4626241-4626321 ( 69) CACACACA 1 chrX:2368565-2368645 ( 73) CACACACA 1 chrIV:10175189-10175269 ( 54) CACACACA 1 chrX:2321883-2321963 ( 52) CACACACA 1 chrV:17545558-17545638 ( 31) CACACACA 1 chrV:15072889-15072969 ( 50) CACACACA 1 chrX:10396877-10396957 ( 39) CACACACT 1 chrV:20383172-20383252 ( 50) CACACACT 1 chrI:7543615-7543695 ( 12) CACACACT 1 chrX:2885473-2885553 ( 43) CACACACT 1 chrX:2879766-2879846 ( 21) CACACACT 1 chrV:7978909-7978989 ( 54) CACTCACA 1 chrV:19622721-19622801 ( 27) CACTCACA 1 chrV:14496643-14496723 ( 54) CACTCACA 1 chrI:7715672-7715752 ( 21) CATACACA 1 chrV:14491243-14491323 ( 4) CATACACA 1 chrI:1719176-1719256 ( 52) CACTCACT 1 chrX:7460684-7460764 ( 1) CACAGACA 1 chrX:10597789-10597869 ( 9) CACTCACT 1 chrII:4130436-4130516 ( 36) CACAGACA 1 chrIII:4514091-4514171 ( 65) CACACAGA 1 chrV:9247569-9247649 ( 12) CACACAGA 1 chrV:20455800-20455880 ( 19) CACACAAA 1 chrIV:393559-393639 ( 38) CATACACT 1 chrII:11535638-11535718 ( 32) CATACACT 1 chrI:6151657-6151737 ( 21) CACACGCA 1 chrV:20359145-20359225 ( 6) CCCACACA 1 chrV:19589137-19589217 ( 31) CACACGCA 1 chrV:14524347-14524427 ( 72) CGCACACA 1 chrX:5995748-5995828 ( 40) CACACAGT 1 chrI:9176226-9176306 ( 73) CACCCACA 1 chrIII:11937064-11937144 ( 31) GACACACA 1 chrV:14501313-14501393 ( 69) CACTCAAA 1 chrIII:11355891-11355971 ( 40) CATAGACA 1 chrX:3914448-3914528 ( 67) CGCACACT 1 chrV:14499568-14499648 ( 24) CCCTCACA 1 chrI:433574-433654 ( 55) CCTACACA 1 chrV:15466259-15466339 ( 53) CACTCAAT 1 chrI:6153669-6153749 ( 71) CACAGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.73438 E= 2.0e+000 -1207 189 -345 -1207 187 -191 -245 -1207 -1207 171 -1207 -79 171 -350 -1207 -37 -1207 179 -145 -1207 194 -1207 -186 -1207 -180 171 -186 -1207 157 -1207 -1207 21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 2.0e+000 0.000000 0.976744 0.023256 0.000000 0.883721 0.069767 0.046512 0.000000 0.000000 0.860465 0.000000 0.139535 0.790698 0.023256 0.000000 0.186047 0.000000 0.906977 0.093023 0.000000 0.930233 0.000000 0.069767 0.000000 0.069767 0.860465 0.069767 0.000000 0.720930 0.000000 0.000000 0.279070 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 regular expression -------------------------------------------------------------------------------- CACACAC[AT] -------------------------------------------------------------------------------- Time 12.02 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCTTCTT MEME-3 width = 8 sites = 2 llr = 22 E-value = 1.7e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCTTCTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::a::a:: probability G :::::::: matrix T aa:aa:aa bits 2.1 ** ** ** 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCTTCTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTTCTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:15065273-15065353 1 1.36e-05 . TTCTTCTT GTTGCGCAGA chrX:2879766-2879846 65 1.36e-05 CCCGATCGCA ttcttctt catcttct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTTCTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:15065273-15065353 1.4e-05 [+3]_72 chrX:2879766-2879846 1.4e-05 64_[+3]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTTCTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCTTCTT width=8 seqs=2 chrV:15065273-15065353 ( 1) TTCTTCTT 1 chrX:2879766-2879846 ( 65) TTCTTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTTCTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 1.7e+005 -765 -765 -765 205 -765 -765 -765 205 -765 192 -765 -765 -765 -765 -765 205 -765 -765 -765 205 -765 192 -765 -765 -765 -765 -765 205 -765 -765 -765 205 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTTCTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.7e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTTCTT MEME-3 regular expression -------------------------------------------------------------------------------- TTCTTCTT -------------------------------------------------------------------------------- Time 15.66 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTGTC MEME-4 width = 8 sites = 2 llr = 23 E-value = 1.4e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTGTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::a probability G :::::a:: matrix T aaaaa:a: bits 2.1 ******* 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTGTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTGTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:19343635-19343715 10 1.31e-05 ctctcggta tttttgtc tgcatctctg chrX:2552374-2552454 53 1.31e-05 TGCGCAATTC TTTTTGTC AATGTCTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTGTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:19343635-19343715 1.3e-05 9_[+4]_63 chrX:2552374-2552454 1.3e-05 52_[+4]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTGTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTGTC width=8 seqs=2 chrV:19343635-19343715 ( 10) TTTTTGTC 1 chrX:2552374-2552454 ( 53) TTTTTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTGTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 1.4e+005 -765 -765 -765 205 -765 -765 -765 205 -765 -765 -765 205 -765 -765 -765 205 -765 -765 -765 205 -765 -765 197 -765 -765 -765 -765 205 -765 192 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTGTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTGTC MEME-4 regular expression -------------------------------------------------------------------------------- TTTTTGTC -------------------------------------------------------------------------------- Time 19.30 secs. ******************************************************************************** ******************************************************************************** MOTIF TTRAAAAT MEME-5 width = 8 sites = 15 llr = 137 E-value = 2.1e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTRAAAAT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::5aaa9: pos.-specific C 1:1::::: probability G :14::::: matrix T 99::::1a bits 2.1 *** * 1.8 *** * 1.6 *** * 1.4 ** ***** Relative 1.2 ** ***** Entropy 1.0 ** ***** (13.2 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTAAAAAT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRAAAAT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:18678547-18678627 52 1.16e-05 TATATATTCC TTAAAAAT GTGCATTTCA chrV:17918714-17918794 72 1.16e-05 attgccggaa ttaaaaat t chrIV:4454540-4454620 59 1.16e-05 TGCAAAGAAT TTAAAAAT CGCCAGGCGG chrV:19630316-19630396 17 1.16e-05 ttttcccact ttaaaaat ccccaaaaTT chrX:2043308-2043388 58 2.38e-05 GAGCTCTCTC TTGAAAAT GTGCAATGGA chrI:5637876-5637956 4 2.38e-05 TTT TTGAAAAT GCAATTCCTC chrV:17917785-17917865 13 2.38e-05 attgccggaa ttgaaaat ttacgacaaa chrIII:13160783-13160863 8 3.64e-05 atcttta ttcaaaat atcttttgcg chrV:14795073-14795153 7 3.64e-05 GAATGG TTCAAAAT AATCTGATAT chrV:15001609-15001689 42 7.29e-05 AAACCACCTC TGAAAAAT TATCGTTTTG chrIV:3807838-3807918 57 7.29e-05 tggTACAAGA TGAAAAAT TGAAATCCAT chrV:18178393-18178473 46 7.29e-05 CGCCAGGACA CTAAAAAT GCGCCGAGGA chrX:4151502-4151582 26 8.51e-05 ATAGGAAGCG TTGAAATT TCGCGCGCTC chrV:17538583-17538663 32 8.51e-05 CCAAAAGTAA TTGAAATT TGACAGCGAG chrV:19430584-19430664 42 1.11e-04 CATGGTGCAG CTGAAAAt aggcttaggt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRAAAAT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:18678547-18678627 1.2e-05 51_[+5]_21 chrV:17918714-17918794 1.2e-05 71_[+5]_1 chrIV:4454540-4454620 1.2e-05 58_[+5]_14 chrV:19630316-19630396 1.2e-05 16_[+5]_56 chrX:2043308-2043388 2.4e-05 57_[+5]_15 chrI:5637876-5637956 2.4e-05 3_[+5]_69 chrV:17917785-17917865 2.4e-05 12_[+5]_60 chrIII:13160783-13160863 3.6e-05 7_[+5]_65 chrV:14795073-14795153 3.6e-05 6_[+5]_66 chrV:15001609-15001689 7.3e-05 41_[+5]_31 chrIV:3807838-3807918 7.3e-05 56_[+5]_16 chrV:18178393-18178473 7.3e-05 45_[+5]_27 chrX:4151502-4151582 8.5e-05 25_[+5]_47 chrV:17538583-17538663 8.5e-05 31_[+5]_41 chrV:19430584-19430664 0.00011 41_[+5]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRAAAAT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTRAAAAT width=8 seqs=15 chrV:18678547-18678627 ( 52) TTAAAAAT 1 chrV:17918714-17918794 ( 72) TTAAAAAT 1 chrIV:4454540-4454620 ( 59) TTAAAAAT 1 chrV:19630316-19630396 ( 17) TTAAAAAT 1 chrX:2043308-2043388 ( 58) TTGAAAAT 1 chrI:5637876-5637956 ( 4) TTGAAAAT 1 chrV:17917785-17917865 ( 13) TTGAAAAT 1 chrIII:13160783-13160863 ( 8) TTCAAAAT 1 chrV:14795073-14795153 ( 7) TTCAAAAT 1 chrV:15001609-15001689 ( 42) TGAAAAAT 1 chrIV:3807838-3807918 ( 57) TGAAAAAT 1 chrV:18178393-18178473 ( 46) CTAAAAAT 1 chrX:4151502-4151582 ( 26) TTGAAATT 1 chrV:17538583-17538663 ( 32) TTGAAATT 1 chrV:19430584-19430664 ( 42) CTGAAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRAAAAT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5229 E= 2.1e+005 -1055 -98 -1055 185 -1055 -1055 -93 185 94 -98 65 -1055 204 -1055 -1055 -1055 204 -1055 -1055 -1055 204 -1055 -1055 -1055 184 -1055 -1055 -85 -1055 -1055 -1055 205 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRAAAAT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 2.1e+005 0.000000 0.133333 0.000000 0.866667 0.000000 0.000000 0.133333 0.866667 0.466667 0.133333 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.866667 0.000000 0.000000 0.133333 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRAAAAT MEME-5 regular expression -------------------------------------------------------------------------------- TT[AG]AAAAT -------------------------------------------------------------------------------- Time 22.94 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:20455800-20455880 4.00e-01 80 chrV:15072889-15072969 4.28e-02 35_[+2(1.64e-05)]_[+2(1.64e-05)]_\ [+2(1.64e-05)]_21 chrV:19630316-19630396 4.26e-02 16_[+5(1.16e-05)]_56 chrV:14507139-14507219 9.99e-01 80 chrV:14501313-14501393 6.28e-02 80 chrV:14793199-14793279 9.18e-01 80 chrV:14504932-14505012 1.41e-01 80 chrV:17944046-17944126 9.11e-01 80 chrV:19371933-19372013 8.20e-02 80 chrV:18573470-18573550 2.76e-01 80 chrV:17377137-17377217 4.36e-01 80 chrV:20410438-20410518 9.03e-01 80 chrV:18674617-18674697 9.19e-01 80 chrV:14830957-14831037 3.04e-01 80 chrV:17545558-17545638 9.19e-02 20_[+2(1.64e-05)]_[+2(1.64e-05)]_44 chrV:14491243-14491323 2.11e-02 3_[+2(6.41e-05)]_69 chrV:14496643-14496723 3.46e-03 53_[+2(4.91e-05)]_19 chrII:11535638-11535718 1.23e-01 80 chrV:14508303-14508383 9.99e-01 80 chrX:5140414-5140494 2.12e-01 80 chrII:15264763-15264843 6.08e-01 80 chrII:5667652-5667732 6.70e-01 80 chrV:18839928-18840008 5.85e-01 80 chrV:16040634-16040714 2.33e-02 36_[+4(8.82e-05)]_36 chrX:2879766-2879846 6.46e-04 20_[+2(3.28e-05)]_36_[+3(1.36e-05)]_\ 8 chrIII:11937064-11937144 6.12e-01 80 chrV:16774608-16774688 7.71e-02 80 chrV:18677439-18677519 1.08e-01 80 chrV:14689489-14689569 2.52e-02 10_[+1(1.40e-05)]_62 chrX:5818367-5818447 8.76e-01 80 chrV:16647834-16647914 8.97e-01 80 chrX:11248220-11248300 1.97e-01 80 chrV:18619681-18619761 2.11e-01 80 chrV:18619452-18619532 9.82e-01 80 chrX:2321883-2321963 1.08e-02 27_[+2(1.64e-05)]_[+2(1.64e-05)]_\ [+2(1.64e-05)]_[+2(1.64e-05)]_21 chrIII:9007328-9007408 5.04e-01 80 chrV:20790060-20790140 3.42e-01 80 chrX:9102293-9102373 2.10e-01 80 chrIV:10175189-10175269 1.50e-01 51_[+2(1.64e-05)]_21 chrV:15610565-15610645 8.05e-01 80 chrV:19996621-19996701 5.26e-01 80 chrX:12407489-12407569 7.70e-01 80 chrV:18490660-18490740 4.19e-01 80 chrV:18589727-18589807 8.97e-01 80 chrV:15914864-15914944 7.20e-01 80 chrV:17981867-17981947 6.73e-01 80 chrV:13869052-13869132 1.91e-01 1_[+2(1.64e-05)]_[+2(1.64e-05)]_\ [+2(1.64e-05)]_[+2(1.64e-05)]_[+2(1.64e-05)]_39 chrIV:1905353-1905433 1.32e-01 80 chrV:20749190-20749270 2.38e-02 80 chrV:15554034-15554114 6.36e-01 80 chrV:17749328-17749408 6.43e-01 80 chrIV:9263928-9264008 7.86e-01 80 chrV:18479423-18479503 3.23e-01 80 chrI:3861648-3861728 8.09e-01 80 chrV:17917785-17917865 2.13e-01 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