******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/dpl-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:4035131-4035211 1.0000 80 chrI:7554763-7554843 1.0000 80 chrIV:3212096-3212176 1.0000 80 chrI:8082966-8083046 1.0000 80 chrIII:10093240-10093320 1.0000 80 chrX:9705722-9705802 1.0000 80 chrV:1049529-1049609 1.0000 80 chrI:5871960-5872040 1.0000 80 chrIII:1207995-1208075 1.0000 80 chrI:3684596-3684676 1.0000 80 chrII:2289598-2289678 1.0000 80 chrI:7559656-7559736 1.0000 80 chrII:11968402-11968482 1.0000 80 chrI:534299-534379 1.0000 80 chrI:6109753-6109833 1.0000 80 chrIV:9403912-9403992 1.0000 80 chrI:9274737-9274817 1.0000 80 chrIV:1177846-1177926 1.0000 80 chrII:10350641-10350721 1.0000 80 chrIII:8628557-8628637 1.0000 80 chrV:6593862-6593942 1.0000 80 chrIII:9089610-9089690 1.0000 80 chrI:1895077-1895157 1.0000 80 chrIII:5190816-5190896 1.0000 80 chrV:9382726-9382806 1.0000 80 chrV:18086934-18087014 1.0000 80 chrX:2258548-2258628 1.0000 80 chrI:519978-520058 1.0000 80 chrI:6038163-6038243 1.0000 80 chrI:3866568-3866648 1.0000 80 chrII:8276246-8276326 1.0000 80 chrIII:12278928-12279008 1.0000 80 chrI:10565995-10566075 1.0000 80 chrV:12271638-12271718 1.0000 80 chrI:13367756-13367836 1.0000 80 chrV:8223-8303 1.0000 80 chrI:7570747-7570827 1.0000 80 chrM:13604-13684 1.0000 80 chrIII:7068796-7068876 1.0000 80 chrIII:7074143-7074223 1.0000 80 chrII:10393837-10393917 1.0000 80 chrV:15578507-15578587 1.0000 80 chrV:13312445-13312525 1.0000 80 chrI:10185722-10185802 1.0000 80 chrV:15059698-15059778 1.0000 80 chrV:5596522-5596602 1.0000 80 chrV:8773946-8774026 1.0000 80 chrII:13083891-13083971 1.0000 80 chrI:4185245-4185325 1.0000 80 chrII:8457581-8457661 1.0000 80 chrI:4829917-4829997 1.0000 80 chrIII:12152320-12152400 1.0000 80 chrI:10560201-10560281 1.0000 80 chrIII:4922165-4922245 1.0000 80 chrI:3741255-3741335 1.0000 80 chrV:3578975-3579055 1.0000 80 chrII:11782689-11782769 1.0000 80 chrIV:2275742-2275822 1.0000 80 chrIV:8511208-8511288 1.0000 80 chrX:15241363-15241443 1.0000 80 chrM:13144-13224 1.0000 80 chrIII:5448334-5448414 1.0000 80 chrI:9581586-9581666 1.0000 80 chrIII:4489094-4489174 1.0000 80 chrIV:11142609-11142689 1.0000 80 chrIII:9570985-9571065 1.0000 80 chrII:5377763-5377843 1.0000 80 chrI:3930529-3930609 1.0000 80 chrIII:4291438-4291518 1.0000 80 chrV:9930787-9930867 1.0000 80 chrII:8283382-8283462 1.0000 80 chrII:14234544-14234624 1.0000 80 chrI:3600842-3600922 1.0000 80 chrV:6043437-6043517 1.0000 80 chrIII:11526564-11526644 1.0000 80 chrIII:9393428-9393508 1.0000 80 chrIII:2331387-2331467 1.0000 80 chrIV:17273883-17273963 1.0000 80 chrIII:7952245-7952325 1.0000 80 chrII:12284183-12284263 1.0000 80 chrIII:4878417-4878497 1.0000 80 chrV:5939675-5939755 1.0000 80 chrII:4828229-4828309 1.0000 80 chrII:2204236-2204316 1.0000 80 chrIV:5188209-5188289 1.0000 80 chrIII:11565755-11565835 1.0000 80 chrIII:11580646-11580726 1.0000 80 chrI:12183215-12183295 1.0000 80 chrV:8302687-8302767 1.0000 80 chrIV:13231549-13231629 1.0000 80 chrIII:2619736-2619816 1.0000 80 chrIV:17461490-17461570 1.0000 80 chrII:12184953-12185033 1.0000 80 chrI:10173226-10173306 1.0000 80 chrIV:2670814-2670894 1.0000 80 chrIV:1309987-1310067 1.0000 80 chrI:12966433-12966513 1.0000 80 chrII:10553884-10553964 1.0000 80 chrI:5357535-5357615 1.0000 80 chrI:3876917-3876997 1.0000 80 chrIII:2805250-2805330 1.0000 80 chrI:3223024-3223104 1.0000 80 chrII:8162393-8162473 1.0000 80 chrV:10031555-10031635 1.0000 80 chrIII:9617098-9617178 1.0000 80 chrV:5204339-5204419 1.0000 80 chrI:128343-128423 1.0000 80 chrIII:13455929-13456009 1.0000 80 chrIII:10114817-10114897 1.0000 80 chrII:386113-386193 1.0000 80 chrII:6536094-6536174 1.0000 80 chrIII:10248596-10248676 1.0000 80 chrI:8839249-8839329 1.0000 80 chrI:13628619-13628699 1.0000 80 chrV:13131609-13131689 1.0000 80 chrIV:11856427-11856507 1.0000 80 chrIII:8101101-8101181 1.0000 80 chrIII:491259-491339 1.0000 80 chrIII:4918110-4918190 1.0000 80 chrIII:6869461-6869541 1.0000 80 chrI:14405729-14405809 1.0000 80 chrII:11578013-11578093 1.0000 80 chrII:13725924-13726004 1.0000 80 chrIV:9932208-9932288 1.0000 80 chrII:5501452-5501532 1.0000 80 chrI:2306846-2306926 1.0000 80 chrI:4765581-4765661 1.0000 80 chrIV:9777713-9777793 1.0000 80 chrIV:9386185-9386265 1.0000 80 chrI:3785954-3786034 1.0000 80 chrIV:7149364-7149444 1.0000 80 chrI:3368666-3368746 1.0000 80 chrI:3481533-3481613 1.0000 80 chrI:10667080-10667160 1.0000 80 chrI:2433704-2433784 1.0000 80 chrIV:7632684-7632764 1.0000 80 chrX:13729884-13729964 1.0000 80 chrII:9706366-9706446 1.0000 80 chrIII:10642950-10643030 1.0000 80 chrIV:7796854-7796934 1.0000 80 chrI:3438944-3439024 1.0000 80 chrV:6838766-6838846 1.0000 80 chrV:7854119-7854199 1.0000 80 chrII:6974165-6974245 1.0000 80 chrIII:10807382-10807462 1.0000 80 chrIV:13353377-13353457 1.0000 80 chrI:871954-872034 1.0000 80 chrX:11792094-11792174 1.0000 80 chrV:14597937-14598017 1.0000 80 chrIII:902050-902130 1.0000 80 chrIII:10905333-10905413 1.0000 80 chrIII:8782232-8782312 1.0000 80 chrII:6197039-6197119 1.0000 80 chrII:2059160-2059240 1.0000 80 chrI:7581914-7581994 1.0000 80 chrII:2288979-2289059 1.0000 80 chrII:4333170-4333250 1.0000 80 chrV:1472184-1472264 1.0000 80 chrV:14992881-14992961 1.0000 80 chrIII:13307265-13307345 1.0000 80 chrI:3931916-3931996 1.0000 80 chrX:10018436-10018516 1.0000 80 chrV:4063695-4063775 1.0000 80 chrX:2971071-2971151 1.0000 80 chrIII:3705110-3705190 1.0000 80 chrI:6565999-6566079 1.0000 80 chrIV:874834-874914 1.0000 80 chrIII:7584424-7584504 1.0000 80 chrV:5687357-5687437 1.0000 80 chrI:12920721-12920801 1.0000 80 chrV:11079038-11079118 1.0000 80 chrX:16617858-16617938 1.0000 80 chrIV:10368011-10368091 1.0000 80 chrIII:6442665-6442745 1.0000 80 chrIII:7104176-7104256 1.0000 80 chrV:15395491-15395571 1.0000 80 chrX:8955887-8955967 1.0000 80 chrIII:6615209-6615289 1.0000 80 chrIV:15028997-15029077 1.0000 80 chrI:10478249-10478329 1.0000 80 chrIV:2773516-2773596 1.0000 80 chrIII:472123-472203 1.0000 80 chrIII:1533241-1533321 1.0000 80 chrIV:11822603-11822683 1.0000 80 chrI:13812432-13812512 1.0000 80 chrIV:11337178-11337258 1.0000 80 chrIII:2031343-2031423 1.0000 80 chrII:12739464-12739544 1.0000 80 chrIV:3213585-3213665 1.0000 80 chrII:10714378-10714458 1.0000 80 chrII:11824032-11824112 1.0000 80 chrI:8487402-8487482 1.0000 80 chrIII:6379216-6379296 1.0000 80 chrI:10687175-10687255 1.0000 80 chrII:2804383-2804463 1.0000 80 chrIV:13512317-13512397 1.0000 80 chrV:14734503-14734583 1.0000 80 chrV:8031328-8031408 1.0000 80 chrII:13596734-13596814 1.0000 80 chrI:3982887-3982967 1.0000 80 chrX:1845595-1845675 1.0000 80 chrIV:6415327-6415407 1.0000 80 chrIII:11774653-11774733 1.0000 80 chrII:8661692-8661772 1.0000 80 chrV:5433161-5433241 1.0000 80 chrII:12738948-12739028 1.0000 80 chrIII:13278285-13278365 1.0000 80 chrI:10570093-10570173 1.0000 80 chrII:7025620-7025700 1.0000 80 chrI:8027954-8028034 1.0000 80 chrV:11503480-11503560 1.0000 80 chrI:13840069-13840149 1.0000 80 chrIII:10329924-10330004 1.0000 80 chrIII:7712043-7712123 1.0000 80 chrIII:1905759-1905839 1.0000 80 chrIV:7477870-7477950 1.0000 80 chrII:7880560-7880640 1.0000 80 chrX:7340552-7340632 1.0000 80 chrIII:6489061-6489141 1.0000 80 chrIII:7724599-7724679 1.0000 80 chrII:13722926-13723006 1.0000 80 chrI:10788778-10788858 1.0000 80 chrI:12520524-12520604 1.0000 80 chrX:4409692-4409772 1.0000 80 chrIV:5731761-5731841 1.0000 80 chrI:12732972-12733052 1.0000 80 chrII:1344721-1344801 1.0000 80 chrII:11050054-11050134 1.0000 80 chrII:9242972-9243052 1.0000 80 chrV:4890132-4890212 1.0000 80 chrIV:4510993-4511073 1.0000 80 chrX:4490548-4490628 1.0000 80 chrII:6321170-6321250 1.0000 80 chrII:580327-580407 1.0000 80 chrV:156541-156621 1.0000 80 chrII:31704-31784 1.0000 80 chrIII:7357538-7357618 1.0000 80 chrIV:14070346-14070426 1.0000 80 chrI:5274290-5274370 1.0000 80 chrIII:8630998-8631078 1.0000 80 chrIII:5153296-5153376 1.0000 80 chrIII:8268493-8268573 1.0000 80 chrI:6358582-6358662 1.0000 80 chrII:2638242-2638322 1.0000 80 chrI:10633198-10633278 1.0000 80 chrII:11578532-11578612 1.0000 80 chrV:1893039-1893119 1.0000 80 chrX:16503159-16503239 1.0000 80 chrII:3680522-3680602 1.0000 80 chrII:13036875-13036955 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_dpl-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/dpl-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.279 C 0.22 G 0.221 T 0.28 Background letter frequencies (from file dataset with add-one prior applied): A 0.279 C 0.22 G 0.221 T 0.28 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF DVGCGCGM MEME-1 width = 8 sites = 206 llr = 1202 E-value = 5.0e-064 ******************************************************************************** -------------------------------------------------------------------------------- Motif DVGCGCGM MEME-1 Description -------------------------------------------------------------------------------- Simplified A 22::::24 pos.-specific C 141a:924 probability G 238:a161 matrix T 41::::12 bits 2.2 ** 2.0 ** 1.7 *** 1.5 **** Relative 1.3 **** Entropy 1.1 **** (8.4 bits) 0.9 **** 0.7 **** 0.4 ***** 0.2 ******* 0.0 -------- Multilevel TCGCGCGC consensus GG CA sequence AA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DVGCGCGM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:13722926-13723006 46 7.08e-06 AAATGCGCTC TCGCGCGC GCCAAGCTAG chrIV:11337178-11337258 31 7.08e-06 AATAATTTTT TCGCGCGC GCGCGCCGTG chrI:3368666-3368746 27 7.08e-06 ACTCAAATTT TCGCGCGC AAATTTGAAA chrII:13725924-13726004 67 7.08e-06 TTTTTCCATT TCGCGCGC GCGCAT chrIII:10248596-10248676 8 7.08e-06 TTGAATC TCGCGCGC TCTCCTGTTT chrIV:17461490-17461570 14 7.08e-06 ATTTTGGGTT TCGCGCGC TCGTTCAAAC chrIV:5188209-5188289 8 7.08e-06 TTTAATT TCGCGCGC AAAAAAAGTT chrIII:4878417-4878497 28 7.08e-06 AAATTTGTCT TCGCGCGC TACTCGAAAC chrIII:9393428-9393508 11 7.08e-06 CGTTGTTTTT TCGCGCGC TCTCAACTTC chrV:15059698-15059778 40 7.08e-06 CAGCAAGGTT TCGCGCGC TCGCTCCGTA chrI:519978-520058 22 7.08e-06 TGCACAACGT TCGCGCGC GCGCCGAAGT chrV:18086934-18087014 18 7.08e-06 AATTCGAATT TCGCGCGC ATTTCACCGT chrIII:1905759-1905839 42 2.88e-05 TGTTAACTAG GCGCGCGC CTTGTTTAGA chrII:12739464-12739544 23 2.88e-05 TAATTTTTTT GCGCGCGC TCACAAGCCA chrV:13131609-13131689 51 2.88e-05 AAAAAGAAAG TGGCGCGC TCGTCTCAAG chrI:8839249-8839329 34 2.88e-05 tcttcctggc gcgcgcgc gctctctctc chrII:10393837-10393917 38 2.88e-05 CGCTTTGCTG GCGCGCGC GAGCGGCAAT chrIII:12278928-12279008 61 2.88e-05 aatttttttt tggcgcgc atttgaaaaa chrIV:3212096-3212176 29 2.88e-05 GTCTCcgcgc gcgcgcgc gcgcCGTTTT chrI:7554763-7554843 49 2.88e-05 TTCACTTTTT TCGCGCGA AATTTTTCTT chrIII:4918110-4918190 23 3.58e-05 GCAAACATTT ACGCGCGC GGGTTTCGCA chrV:156541-156621 29 6.65e-05 ACACTAAACA GGGCGCGC TAACGACACT chrIII:10807382-10807462 33 6.65e-05 GATCTCAGGC GGGCGCGC ACGAATTCAT chrIV:1309987-1310067 42 6.65e-05 TTTTAAAAAT TGGCGCGA ACGCGCAGGT chrI:12183215-12183295 45 6.65e-05 GAAATAACGC TAGCGCGC TTTGTTTATC chrIII:5448334-5448414 43 6.65e-05 TTTTTTAGGT TGGCGCGA GTTTTTGCAA chrIV:8511208-8511288 72 6.65e-05 AACGAGAAAT GCGCGCGA G chrV:3578975-3579055 33 6.65e-05 TCGGTGTTGT TGGCGCGA AAATTTTGTT chrI:3741255-3741335 64 6.65e-05 CACACATTTT TGGCGCGA GTTTTGAAA chrV:9382726-9382806 33 6.65e-05 tttcgcgacg tggcgcga aatatttcga chrIII:9617098-9617178 4 8.81e-05 CTT CCGCGCGC TTTGAAAAAC chrIV:11142609-11142689 55 8.81e-05 GTCAAATTTC ACGCGCGA AATTTAAACA chrII:11782689-11782769 47 8.81e-05 AAAAATCGAA ACGCGCGA AAAAATTAAT chrIII:7074143-7074223 39 8.81e-05 AGAACCATTT ACGCGCGA AGTTTGAATA chrII:3680522-3680602 6 1.21e-04 CCGTG GAGCGCGC ATGCGCAGGT chrIV:14070346-14070426 62 1.21e-04 ATTGTCATTG GAGCGCGC TTACAGTAAG chrI:13812432-13812512 43 1.21e-04 ATTCTCAATG GAGCGCGC TTGCAGTTTG chrV:4063695-4063775 10 1.21e-04 agtccgatg gagcgcgc ttgcatAACC chrIII:491259-491339 48 1.21e-04 CGTGCcggtg gagcgcgc ttgcattttt chrIV:2670814-2670894 52 1.21e-04 GCGTGTTGTT TAGCGCGA GCTTTTTTCC chrIII:11565755-11565835 54 1.21e-04 ATTATCGGTG GAGCGCGC ATGCTTTTTT chrIII:7952245-7952325 68 1.21e-04 TCCATAAAAC TAGCGCGA ATTCA chrIV:17273883-17273963 57 1.21e-04 GGCAAAATTC TAGCGCGA ATTTAAAATT chrIII:2331387-2331467 44 1.21e-04 AGTTATGCAA TCGCGCCC CATCGCACCC chrI:7570747-7570827 33 1.21e-04 ATTCTCAATG GAGCGCGC TTGCTCTTTT chrV:1049529-1049609 11 1.21e-04 GTGACCAGTA GAGCGCGC TTGTTGCCGC chrV:4890132-4890212 66 1.39e-04 TTTTAAGAAT TCGCGCGT TTTCGCC chrV:14734503-14734583 24 1.39e-04 ATATGAGGTT TCGCGCGT GGTGTGCGGT chrII:12284183-12284263 32 1.39e-04 ATTTTCGATT TTGCGCGC CATGGGTCTC chrI:1895077-1895157 65 1.39e-04 CGGAGTGTCG TTGCGCGC CGTAAATC chrIV:7477870-7477950 58 1.69e-04 CGCAAATTTT AGGCGCGA ATTTCTCTAT chrIV:7796854-7796934 66 1.69e-04 TCCGCCGCGG AGGCGCGA AATTTTG chrV:12271638-12271718 46 1.69e-04 AGAAAGACGG CCGCGCGA AAGAATTCGT chrIII:1207995-1208075 29 1.69e-04 GCAATAATGC AAGCGCGC TCCACTGTAC chrI:8082966-8083046 32 1.69e-04 TTAATGCACA CGGCGCGC AAGATTTGAC chrII:13596734-13596814 54 2.00e-04 CACCGAATGC GAGCGCGA AAATTTTTCG chrIII:6442665-6442745 36 2.00e-04 ATTCAAATAT TCGCGCCA TGCGTATTTT chrI:3931916-3931996 45 2.00e-04 GATTTTGGAA GAGCGCGA AATTTTGTAT chrI:871954-872034 59 2.00e-04 ATTCGCAATG GAGCGCGA TTGCATATTT chrIII:4291438-4291518 17 2.00e-04 TGAAAATTTT TGGCGCCC GCGCCTCACA chrV:13312445-13312525 12 2.00e-04 TTGCAAAATT TCGCGCCA AGTGCATTCT chrI:10565995-10566075 7 2.00e-04 TGCCTT TCGCGCCA ACACGAGAGA chrI:10687175-10687255 70 2.44e-04 TTTATTATTT TGGCGCGT TTA chrV:6838766-6838846 49 2.83e-04 ACGATAAACA AAGCGCGA AGGGTTATTT chrIV:9777713-9777793 50 2.83e-04 GCAATTGCAA CGGCGCGA ATTTCGAAAT chrI:4765581-4765661 13 2.83e-04 TTAAATGCAG ACGCGCCC CAATGCACAG chrIII:8101101-8101181 9 2.83e-04 ATCGATGA CAGCGCGC TGTTTTGTTT chrI:13628619-13628699 70 2.83e-04 AGGTGGGTCT CGGCGCGA TAG chrII:2204236-2204316 54 2.83e-04 CACTTCTTTT CGGCGCGA GGTTTGAATT chrI:3600842-3600922 45 2.83e-04 TGGGAGGAAA ACGCGCCC CATCGCACTT chrII:8276246-8276326 24 2.83e-04 TATTTAAATC ACGCGCCC TTTTTTTCGC chrV:5204339-5204419 21 3.32e-04 AATTTGAATT ACGCGCGT ATATCAGTGT chrIII:7068796-7068876 65 3.32e-04 CACAGACAAT TGGCGCCA GATTCAAA chrIII:4489094-4489174 1 3.87e-04 . TCGCGCAA GCACGCGAAA chrIII:12152320-12152400 33 3.87e-04 TTTATCAACA GGGCGCGT TTGCACTTTT chrIV:13512317-13512397 35 4.37e-04 ATCCAAAATT TCCCGCGC AAAAACGAAA chrI:2306846-2306926 54 4.37e-04 TGGAAACGAT TCCCGCGC GTGCGCAAAC chrV:6043437-6043517 25 4.37e-04 GAATTTGAAC ACGCGCCA ATTTGAGGTC chrI:3866568-3866648 58 4.37e-04 GTGGTGAGAC CCGCGCCC CCGCGCAAAA chrIV:1177846-1177926 20 4.37e-04 CGGTTTGAAC TCCCGCGC ATTTGAATTA chrI:12966433-12966513 39 5.13e-04 CGAAATAGCG GGGCGCCA GTGGAGAGCG chrI:6109753-6109833 3 5.13e-04 AA TAGCGCCA AAAATGTTTG chrII:13036875-13036955 27 5.86e-04 TAGTGCGGTG GGGCGCAC TTGCACAAAA chrII:2638242-2638322 33 5.86e-04 ATGTGCGGTG GAGCGCGT TTGCTTATTT chrI:6358582-6358662 14 5.86e-04 GGAGTTGTGT TAGCGCAC TCTCCGTGCA chrI:12732972-12733052 48 5.86e-04 AGTTGCATTG GAGCGCGT TTGCATCGAA chrI:10478249-10478329 51 5.86e-04 TGTGGCGGAG GGGCGCAC TTTCATGTTT chrIII:2805250-2805330 44 5.86e-04 TTTCTCAATG GGGCGCAC TTGCATTTCT chrV:8773946-8774026 72 5.86e-04 TATAGGAATG GGGCGCAC T chrV:8223-8303 67 5.86e-04 GTCTGCGGAA TTGCGCCC CCCTTT chrIII:9089610-9089690 7 5.86e-04 TAAACT GGGCGCAC GCGGGATATC chrV:6593862-6593942 58 5.86e-04 TTGAATCACC ACGCGCGG GAATCCGGCA chrIV:9403912-9403992 52 5.86e-04 AAGTGCGGTG GAGCGCGT TTGCACCGGA chrI:5871960-5872040 70 5.86e-04 CGCCTGTTTT TGGCGCAA AAT chrIV:5731761-5731841 21 6.64e-04 GATTACGACT TTGCGCGT TGTTTATCGT chrX:7340552-7340632 9 6.64e-04 CAAAAATA TTGCGCGT CAAATCTGTT chrIII:3705110-3705190 30 6.64e-04 TGCAAAAACA TTGCGCGT CAAATTGTGT chrII:2059160-2059240 43 6.64e-04 GTTGCGTACA AAGCGCCC GAACCGACGA chrII:386113-386193 39 6.64e-04 AAGTCCGCAA TTGCGCGT CAGGTGTTGC chrIII:10114817-10114897 4 6.64e-04 ATT TTGCGCGT CAACTTCGCT chrII:7880560-7880640 44 7.58e-04 TCCTCTTCAC TCGCGGGA AATCTGTTTT chrIII:10642950-10643030 71 7.58e-04 TGTACGCAGA GAGCGCCA CT chrI:3481533-3481613 14 7.58e-04 GATTACGCAA TCGCGCTC CATGGACAAC chrIV:7149364-7149444 68 7.58e-04 AACACACCTC ACGCGCAA ACTCT chrI:14405729-14405809 56 7.58e-04 ACCAGACCTC ACGCGCAA TTGCGGACTC chrV:9930787-9930867 2 7.58e-04 C CCGCGCAC CAATGTTGCG chrI:6038163-6038243 33 7.58e-04 AATTCAAATT TCGCGCTC TTTCGAAGAC chrX:10018436-10018516 47 8.45e-04 gcgttatcca ttgcgcca cGCGGCCATG chrII:9706366-9706446 44 8.45e-04 CAGACGTTAA TGGCGCCT CGTTCAAATT chrIV:9386185-9386265 43 8.45e-04 AAGTGCAACG GAGCGCAC TTGCACGAAT chrII:6536094-6536174 45 8.45e-04 TTTCTCAGTG GAGCGCAC TTGCATTCAT chrV:8302687-8302767 30 8.45e-04 ACGCTAAACA AGGCGCGG TGTGGAATAA chrII:4828229-4828309 19 8.45e-04 AAATTTGAAC ACCCGCGC ATTTTTGTGT chrI:10185722-10185802 68 8.45e-04 ATATGCAGTG GAGCGCAC TTAAT chrI:13840069-13840149 33 9.54e-04 TTTGCGTACA AAGCGCCA CACCTGACGC chrIII:7584424-7584504 63 9.54e-04 AGTAGGATTT ACGCGGGC GTTGGTCTCG chrIII:13307265-13307345 10 9.54e-04 ATCAAAATT TCGCGCCG CGAGTGTATT chrII:14234544-14234624 43 9.54e-04 GTCAATTCAC CGGCGCCA ATTCGAATTT chrI:4829917-4829997 32 9.54e-04 TTTCTCAAAG GAGCGCGG TGACATACAC chrII:13083891-13083971 51 9.54e-04 CGGTGTACGC AAGCGCCA GAGCCTACGA chrV:5596522-5596602 46 9.54e-04 AACTTCGATG GAGCGCGG TTGCATGCCG chrII:9242972-9243052 11 1.09e-03 TTTTAAACTT CCGCGCAA AAACCAACAA chrI:10788778-10788858 23 1.09e-03 GTAAATAACA TGGCGGGA ATATTGCATG chrIII:472123-472203 66 1.09e-03 AATACTTTCG TGGCGGGA CCCGGCA chrI:128343-128423 63 1.09e-03 GTGGTTCTTT TGGCGGGA TTTTTCGGAT chrI:4185245-4185325 52 1.09e-03 GACACCGCGG TGGCGGGA AGAAAAGAAG chrII:10714378-10714458 71 1.17e-03 TGTGTGCACA AAGCGCGG GG chrII:6974165-6974245 46 1.17e-03 TTGACGAGCA ATGCGCGT CAAATATGCT chrI:3438944-3439024 16 1.17e-03 AAGTCCGTGA ATGCGCGT GCGGTGCAAC chrIII:8628557-8628637 4 1.17e-03 CAA ATGCGCGT AATGGTGTAC chrV:1893039-1893119 43 1.30e-03 AATTCGAAAC TGGCGCCG CCGAGGATGA chrII:6321170-6321250 32 1.30e-03 GAGTAAGCAA ACGCGCTC TGTCGAGACT chrIII:6379216-6379296 70 1.30e-03 GCCTTAAGGC ACGCGGGA CTG chrIV:3213585-3213665 14 1.30e-03 CCCATTGCAA ACGCGCTC CGTTGGCAAT chrIII:1533241-1533321 30 1.30e-03 GCCAATGCAA ACGCGCTC CATTGAGAAA chrV:5687357-5687437 48 1.30e-03 TTTGAGGAAA ACGCGCTC CAGTGACATG chrIII:902050-902130 28 1.30e-03 TGAAATGCAA ACGCGCTC CATAGATAAT chrX:15241363-15241443 62 1.30e-03 GAGCTAACCG GGCCGCGA CATCAGCAGT chrI:10560201-10560281 57 1.30e-03 GTGAAATTCG TTGCGCAA TACGCAATAT chrI:5274290-5274370 16 1.47e-03 TTACATTTTT TCCCGCGT TTTATTTACG chrIV:11822603-11822683 53 1.47e-03 CGGCGAAATA TCGCGCAG AGGGAATAGC chrIII:6615209-6615289 25 1.47e-03 AATTTGAACG TCCCGCGT TTTTGTTTGT chrIV:874834-874914 49 1.47e-03 TTTGTCAATG GGGCGCTC TTGCATTTCC chrIII:10905333-10905413 23 1.47e-03 gttcctctct ctgcgccc tcagcgttcc chrI:3223024-3223104 55 1.47e-03 TGCACCGAAA ATGCGCCA AGCGGAAAAT chrI:13367756-13367836 36 1.47e-03 ATTGGGGGTT GGGCGGGA ATTTGAACTT chrI:9274737-9274817 30 1.47e-03 GTGGCGAAAA GAGCGGGC GATCAGAGAA chrV:15395491-15395571 43 1.58e-03 TTCAAATACA CCCCGCGA GACCCACCAA chrX:13729884-13729964 67 1.58e-03 AATCTGGTTC TCGCGGGT TCGAGC chrI:2433704-2433784 10 1.58e-03 TTTCAAACA ACGCGCCG ACAAAATCGG chrI:10667080-10667160 30 1.58e-03 ACCGTGTGTG ACGCGCAT TTGCGGACTC chrV:5939675-5939755 47 1.58e-03 AAATCCCCTA CTGCGCGT TGTTTATTCT chrII:1344721-1344801 19 1.74e-03 GGTCCACTTT TCCCGCCA AGAAACACAT chrII:12738948-12739028 44 1.74e-03 GCAAACACTC GTGCGCAA CGGGATATCG chrV:8031328-8031408 33 1.74e-03 TTTCGCGACA GGGCGCAT TTGCTTCGTC chrII:4333170-4333250 52 1.74e-03 aatttgaatt tcccgcca aaatattGAA chrII:11824032-11824112 32 1.90e-03 CAAGACAAAT GAGCGGGA AACACCCGAG chrIV:7632684-7632764 11 1.90e-03 TTCTGAATTT TGCCGCGT ATTTGTTTCC chrII:11968402-11968482 49 1.90e-03 GTAGCCCGTG GAGCGGGA AATTTTGGAT chrII:11578532-11578612 36 2.06e-03 TTGCTCGTTT TCGCGGAC TATTTTGAAT chrII:31704-31784 11 2.06e-03 ACATCTCTCG TTGCGGGA TAGTGGAGTG chrI:8027954-8028034 32 2.06e-03 AAAACTTTCA AGGCGCAT GAAGAATGGC chrII:7025620-7025700 54 2.06e-03 AGCTGTGTAA TTGCGCTC CATTGCGAAA chrV:5433161-5433241 39 2.06e-03 ACGCATGCAG TTGCGCTC TACCGCACAC chrI:3982887-3982967 9 2.06e-03 TGAAGTTT TCCCGCGG TTTTCATAGA chrV:11079038-11079118 53 2.06e-03 ATTCCTTCAT ATGCGCAA CGAAAAATTG chrII:6197039-6197119 52 2.06e-03 TGCACACATC TCGCGCTT TCCCCATTTC chrV:7854119-7854199 13 2.06e-03 TCTATGTTAA AGGCGCAT GCATTTATTT chrI:10173226-10173306 69 2.06e-03 CGCCACAAAT CGCCGCGA AAAG chrIV:2773516-2773596 73 2.23e-03 ATGTGGACGA CGGCGGGA chrV:14992881-14992961 20 2.23e-03 ATCCAAGTTT TGCCGCCA GCCGCAATGG chrIII:6869461-6869541 17 2.23e-03 ATTAGCGGTG GAGCGCAT CTGCTCTGCC chrI:534299-534379 46 2.23e-03 TTGCGTACCT CGGCGGGA ATTTAAAGAG chrI:3684596-3684676 73 2.23e-03 GGAAAACAAA ACGCGCAG chrIV:13353377-13353457 20 2.40e-03 ATTTGGGTCT TACCGCGT ATACCGTACT chrII:5501452-5501532 33 2.40e-03 CGACCACAAC TGGCGGCA ATTTCGAACG chrI:9581586-9581666 67 2.40e-03 GACAGACAGA TGGCGGCA ATTCAA chrIII:4922165-4922245 6 2.40e-03 GCAAC TGCCGCAC GGTTTTAAAA chrV:15578507-15578587 24 2.40e-03 CACTCCAATG TTGCGCCG GAGCCTTGTT chrI:8487402-8487482 49 2.60e-03 CAGTGGGTCT CACCGCGA AAGTGCGAAT chrIV:15028997-15029077 51 2.60e-03 CTGTTGTGTA CACCGCGA CGACAATATG chrIV:10368011-10368091 55 2.60e-03 GAATAAATGC ATGCGCCT TTAAAAAATT chrI:6565999-6566079 54 2.60e-03 AACATCTCAT ATGCGCCT TTAAAGTTTT chrIII:5190816-5190896 16 2.60e-03 CTACATACAT GTGCGCTC TACTGATAAT chrI:12920721-12920801 5 2.78e-03 TTTT CAGCGCTC AATTTCGCAA chrV:1472184-1472264 34 2.78e-03 TTCAGAAAGA AGGCGCAG CAGCGGCAGT chrX:2258548-2258628 44 2.78e-03 CACACTTTTT TGGCGGGG GTCAAATCTC chrII:8661692-8661772 33 2.98e-03 AATGACGCCC TACCGCAC TTTCTCTTTG chrX:1845595-1845675 35 2.98e-03 cgggagaaga gagcgcag agagatgaga chrII:10553884-10553964 66 3.43e-03 TAGGGTCTGC CGCCGCGT CAGGGAC chrIII:7104176-7104256 43 3.82e-03 ATTTGAATTT TCCCGCCG GAGGTCAAAA chrI:3876917-3876997 53 3.82e-03 ATCAAAAATC TCCCGCAT TTTTCGAAAA chrII:5377763-5377843 33 3.82e-03 TTTTTGTCGC AACCGCCA AAACTCGCTT chrIII:8782232-8782312 32 4.12e-03 GCAAAAGTGC ATCCGCCC TCACAGACAT chrIV:13231549-13231629 28 4.12e-03 AGTTCGGTGT TTGCGGAC TTGCATACCG chrII:8457581-8457661 16 4.12e-03 GTTTCTCTGT TTGCGCTT CTTTTTGACG chrIV:4510993-4511073 1 4.34e-03 . ATGCGGCC ACCTTGCAAA chrI:7581914-7581994 20 4.34e-03 AGCAAGTTTA CAGCGGGT TCATTGACCG chrIII:7357538-7357618 13 4.54e-03 AATGTGCAAA CACCGCCA CGCCAAAATG chrIII:11774653-11774733 50 4.54e-03 TGTACGCAAA CACCGCCA CGGCAGAATG chrIV:11856427-11856507 50 4.54e-03 CCAAAAAACC GTGCGGCA GCAGTGTCGT chrX:16617858-16617938 40 4.83e-03 GATTCTCCCC GGCCGGGA ATTGAACCAG chrIII:6489061-6489141 60 5.86e-03 GCAAACACCG TCACGCAC ATTTGCGGAT chrIII:7712043-7712123 26 6.95e-03 AGAGAAAAAA ACACGCCA GCTGACAACT chrX:8955887-8955967 54 6.95e-03 GGATTCGAAC CCACGCCC CCGAAGGGAC chrX:16503159-16503239 56 7.52e-03 AGCTATCGAG GCACGCAA AAAAGACTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DVGCGCGM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:13722926-13723006 7.1e-06 45_[+1]_27 chrIV:11337178-11337258 7.1e-06 30_[+1]_42 chrI:3368666-3368746 7.1e-06 26_[+1]_46 chrII:13725924-13726004 7.1e-06 66_[+1]_6 chrIII:10248596-10248676 7.1e-06 7_[+1]_65 chrIV:17461490-17461570 7.1e-06 13_[+1]_59 chrIV:5188209-5188289 7.1e-06 7_[+1]_65 chrIII:4878417-4878497 7.1e-06 27_[+1]_45 chrIII:9393428-9393508 7.1e-06 10_[+1]_62 chrV:15059698-15059778 7.1e-06 39_[+1]_33 chrI:519978-520058 7.1e-06 21_[+1]_51 chrV:18086934-18087014 7.1e-06 17_[+1]_55 chrIII:1905759-1905839 2.9e-05 41_[+1]_31 chrII:12739464-12739544 2.9e-05 22_[+1]_50 chrV:13131609-13131689 2.9e-05 50_[+1]_22 chrI:8839249-8839329 2.9e-05 33_[+1]_39 chrII:10393837-10393917 2.9e-05 37_[+1]_35 chrIII:12278928-12279008 2.9e-05 60_[+1]_12 chrIV:3212096-3212176 2.9e-05 28_[+1]_44 chrI:7554763-7554843 2.9e-05 48_[+1]_24 chrIII:4918110-4918190 3.6e-05 22_[+1]_50 chrV:156541-156621 6.7e-05 28_[+1]_44 chrIII:10807382-10807462 6.7e-05 32_[+1]_40 chrIV:1309987-1310067 6.7e-05 41_[+1]_31 chrI:12183215-12183295 6.7e-05 44_[+1]_28 chrIII:5448334-5448414 6.7e-05 42_[+1]_30 chrIV:8511208-8511288 6.7e-05 71_[+1]_1 chrV:3578975-3579055 6.7e-05 32_[+1]_40 chrI:3741255-3741335 6.7e-05 63_[+1]_9 chrV:9382726-9382806 6.7e-05 32_[+1]_40 chrIII:9617098-9617178 8.8e-05 3_[+1]_69 chrIV:11142609-11142689 8.8e-05 54_[+1]_18 chrII:11782689-11782769 8.8e-05 46_[+1]_26 chrIII:7074143-7074223 8.8e-05 38_[+1]_34 chrII:3680522-3680602 0.00012 5_[+1]_67 chrIV:14070346-14070426 0.00012 61_[+1]_11 chrI:13812432-13812512 0.00012 42_[+1]_30 chrV:4063695-4063775 0.00012 9_[+1]_63 chrIII:491259-491339 0.00012 47_[+1]_25 chrIV:2670814-2670894 0.00012 51_[+1]_21 chrIII:11565755-11565835 0.00012 53_[+1]_19 chrIII:7952245-7952325 0.00012 67_[+1]_5 chrIV:17273883-17273963 0.00012 56_[+1]_16 chrIII:2331387-2331467 0.00012 43_[+1]_29 chrI:7570747-7570827 0.00012 32_[+1]_40 chrV:1049529-1049609 0.00012 10_[+1]_62 chrV:4890132-4890212 0.00014 65_[+1]_7 chrV:14734503-14734583 0.00014 23_[+1]_49 chrII:12284183-12284263 0.00014 31_[+1]_41 chrI:1895077-1895157 0.00014 64_[+1]_8 chrIV:7477870-7477950 0.00017 57_[+1]_15 chrIV:7796854-7796934 0.00017 65_[+1]_7 chrV:12271638-12271718 0.00017 45_[+1]_27 chrIII:1207995-1208075 0.00017 28_[+1]_44 chrI:8082966-8083046 0.00017 31_[+1]_41 chrII:13596734-13596814 0.0002 53_[+1]_19 chrIII:6442665-6442745 0.0002 35_[+1]_37 chrI:3931916-3931996 0.0002 44_[+1]_28 chrI:871954-872034 0.0002 58_[+1]_14 chrIII:4291438-4291518 0.0002 16_[+1]_56 chrV:13312445-13312525 0.0002 11_[+1]_61 chrI:10565995-10566075 0.0002 6_[+1]_66 chrI:10687175-10687255 0.00024 69_[+1]_3 chrV:6838766-6838846 0.00028 48_[+1]_24 chrIV:9777713-9777793 0.00028 49_[+1]_23 chrI:4765581-4765661 0.00028 12_[+1]_60 chrIII:8101101-8101181 0.00028 8_[+1]_64 chrI:13628619-13628699 0.00028 69_[+1]_3 chrII:2204236-2204316 0.00028 53_[+1]_19 chrI:3600842-3600922 0.00028 44_[+1]_28 chrII:8276246-8276326 0.00028 23_[+1]_49 chrV:5204339-5204419 0.00033 20_[+1]_52 chrIII:7068796-7068876 0.00033 64_[+1]_8 chrIII:4489094-4489174 0.00039 [+1]_72 chrIII:12152320-12152400 0.00039 32_[+1]_40 chrIV:13512317-13512397 0.00044 34_[+1]_38 chrI:2306846-2306926 0.00044 53_[+1]_19 chrV:6043437-6043517 0.00044 24_[+1]_48 chrI:3866568-3866648 0.00044 57_[+1]_15 chrIV:1177846-1177926 0.00044 19_[+1]_53 chrI:12966433-12966513 0.00051 38_[+1]_34 chrI:6109753-6109833 0.00051 2_[+1]_70 chrII:13036875-13036955 0.00059 26_[+1]_46 chrII:2638242-2638322 0.00059 32_[+1]_40 chrI:6358582-6358662 0.00059 13_[+1]_59 chrI:12732972-12733052 0.00059 47_[+1]_25 chrI:10478249-10478329 0.00059 50_[+1]_22 chrIII:2805250-2805330 0.00059 43_[+1]_29 chrV:8773946-8774026 0.00059 71_[+1]_1 chrV:8223-8303 0.00059 66_[+1]_6 chrIII:9089610-9089690 0.00059 6_[+1]_66 chrV:6593862-6593942 0.00059 57_[+1]_15 chrIV:9403912-9403992 0.00059 51_[+1]_21 chrI:5871960-5872040 0.00059 69_[+1]_3 chrIV:5731761-5731841 0.00066 20_[+1]_52 chrX:7340552-7340632 0.00066 8_[+1]_64 chrIII:3705110-3705190 0.00066 29_[+1]_43 chrII:2059160-2059240 0.00066 42_[+1]_30 chrII:386113-386193 0.00066 38_[+1]_34 chrIII:10114817-10114897 0.00066 3_[+1]_69 chrII:7880560-7880640 0.00076 43_[+1]_29 chrIII:10642950-10643030 0.00076 70_[+1]_2 chrI:3481533-3481613 0.00076 13_[+1]_59 chrIV:7149364-7149444 0.00076 67_[+1]_5 chrI:14405729-14405809 0.00076 55_[+1]_17 chrV:9930787-9930867 0.00076 1_[+1]_71 chrI:6038163-6038243 0.00076 32_[+1]_40 chrX:10018436-10018516 0.00084 46_[+1]_26 chrII:9706366-9706446 0.00084 43_[+1]_29 chrIV:9386185-9386265 0.00084 42_[+1]_30 chrII:6536094-6536174 0.00084 44_[+1]_28 chrV:8302687-8302767 0.00084 29_[+1]_43 chrII:4828229-4828309 0.00084 18_[+1]_54 chrI:10185722-10185802 0.00084 67_[+1]_5 chrI:13840069-13840149 0.00095 32_[+1]_40 chrIII:7584424-7584504 0.00095 62_[+1]_10 chrIII:13307265-13307345 0.00095 9_[+1]_63 chrII:14234544-14234624 0.00095 42_[+1]_30 chrI:4829917-4829997 0.00095 31_[+1]_41 chrII:13083891-13083971 0.00095 50_[+1]_22 chrV:5596522-5596602 0.00095 45_[+1]_27 chrII:9242972-9243052 0.0011 10_[+1]_62 chrI:10788778-10788858 0.0011 22_[+1]_50 chrIII:472123-472203 0.0011 65_[+1]_7 chrI:128343-128423 0.0011 62_[+1]_10 chrI:4185245-4185325 0.0011 51_[+1]_21 chrII:10714378-10714458 0.0012 70_[+1]_2 chrII:6974165-6974245 0.0012 45_[+1]_27 chrI:3438944-3439024 0.0012 15_[+1]_57 chrIII:8628557-8628637 0.0012 3_[+1]_69 chrV:1893039-1893119 0.0013 42_[+1]_30 chrII:6321170-6321250 0.0013 31_[+1]_41 chrIII:6379216-6379296 0.0013 69_[+1]_3 chrIV:3213585-3213665 0.0013 13_[+1]_59 chrIII:1533241-1533321 0.0013 29_[+1]_43 chrV:5687357-5687437 0.0013 47_[+1]_25 chrIII:902050-902130 0.0013 27_[+1]_45 chrX:15241363-15241443 0.0013 61_[+1]_11 chrI:10560201-10560281 0.0013 56_[+1]_16 chrI:5274290-5274370 0.0015 15_[+1]_57 chrIV:11822603-11822683 0.0015 52_[+1]_20 chrIII:6615209-6615289 0.0015 24_[+1]_48 chrIV:874834-874914 0.0015 48_[+1]_24 chrIII:10905333-10905413 0.0015 22_[+1]_50 chrI:3223024-3223104 0.0015 54_[+1]_18 chrI:13367756-13367836 0.0015 35_[+1]_37 chrI:9274737-9274817 0.0015 29_[+1]_43 chrV:15395491-15395571 0.0016 42_[+1]_30 chrX:13729884-13729964 0.0016 66_[+1]_6 chrI:2433704-2433784 0.0016 9_[+1]_63 chrI:10667080-10667160 0.0016 29_[+1]_43 chrV:5939675-5939755 0.0016 46_[+1]_26 chrII:1344721-1344801 0.0017 18_[+1]_54 chrII:12738948-12739028 0.0017 43_[+1]_29 chrV:8031328-8031408 0.0017 32_[+1]_40 chrII:4333170-4333250 0.0017 51_[+1]_21 chrII:11824032-11824112 0.0019 31_[+1]_41 chrIV:7632684-7632764 0.0019 10_[+1]_62 chrII:11968402-11968482 0.0019 48_[+1]_24 chrII:11578532-11578612 0.0021 35_[+1]_37 chrII:31704-31784 0.0021 10_[+1]_62 chrI:8027954-8028034 0.0021 31_[+1]_41 chrII:7025620-7025700 0.0021 53_[+1]_19 chrV:5433161-5433241 0.0021 38_[+1]_34 chrI:3982887-3982967 0.0021 8_[+1]_64 chrV:11079038-11079118 0.0021 52_[+1]_20 chrII:6197039-6197119 0.0021 51_[+1]_21 chrV:7854119-7854199 0.0021 12_[+1]_60 chrI:10173226-10173306 0.0021 68_[+1]_4 chrIV:2773516-2773596 0.0022 72_[+1] chrV:14992881-14992961 0.0022 19_[+1]_53 chrIII:6869461-6869541 0.0022 16_[+1]_56 chrI:534299-534379 0.0022 45_[+1]_27 chrI:3684596-3684676 0.0022 72_[+1] chrIV:13353377-13353457 0.0024 19_[+1]_53 chrII:5501452-5501532 0.0024 32_[+1]_40 chrI:9581586-9581666 0.0024 66_[+1]_6 chrIII:4922165-4922245 0.0024 5_[+1]_67 chrV:15578507-15578587 0.0024 23_[+1]_49 chrI:8487402-8487482 0.0026 48_[+1]_24 chrIV:15028997-15029077 0.0026 50_[+1]_22 chrIV:10368011-10368091 0.0026 54_[+1]_18 chrI:6565999-6566079 0.0026 53_[+1]_19 chrIII:5190816-5190896 0.0026 15_[+1]_57 chrI:12920721-12920801 0.0028 4_[+1]_68 chrV:1472184-1472264 0.0028 33_[+1]_39 chrX:2258548-2258628 0.0028 43_[+1]_29 chrII:8661692-8661772 0.003 32_[+1]_40 chrX:1845595-1845675 0.003 34_[+1]_38 chrII:10553884-10553964 0.0034 65_[+1]_7 chrIII:7104176-7104256 0.0038 42_[+1]_30 chrI:3876917-3876997 0.0038 52_[+1]_20 chrII:5377763-5377843 0.0038 32_[+1]_40 chrIII:8782232-8782312 0.0041 31_[+1]_41 chrIV:13231549-13231629 0.0041 27_[+1]_45 chrII:8457581-8457661 0.0041 15_[+1]_57 chrIV:4510993-4511073 0.0043 [+1]_72 chrI:7581914-7581994 0.0043 19_[+1]_53 chrIII:7357538-7357618 0.0045 12_[+1]_60 chrIII:11774653-11774733 0.0045 49_[+1]_23 chrIV:11856427-11856507 0.0045 49_[+1]_23 chrX:16617858-16617938 0.0048 39_[+1]_33 chrIII:6489061-6489141 0.0059 59_[+1]_13 chrIII:7712043-7712123 0.0069 25_[+1]_47 chrX:8955887-8955967 0.0069 53_[+1]_19 chrX:16503159-16503239 0.0075 55_[+1]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DVGCGCGM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DVGCGCGM width=8 seqs=206 chrII:13722926-13723006 ( 46) TCGCGCGC 1 chrIV:11337178-11337258 ( 31) TCGCGCGC 1 chrI:3368666-3368746 ( 27) TCGCGCGC 1 chrII:13725924-13726004 ( 67) TCGCGCGC 1 chrIII:10248596-10248676 ( 8) TCGCGCGC 1 chrIV:17461490-17461570 ( 14) TCGCGCGC 1 chrIV:5188209-5188289 ( 8) TCGCGCGC 1 chrIII:4878417-4878497 ( 28) TCGCGCGC 1 chrIII:9393428-9393508 ( 11) TCGCGCGC 1 chrV:15059698-15059778 ( 40) TCGCGCGC 1 chrI:519978-520058 ( 22) TCGCGCGC 1 chrV:18086934-18087014 ( 18) TCGCGCGC 1 chrIII:1905759-1905839 ( 42) GCGCGCGC 1 chrII:12739464-12739544 ( 23) GCGCGCGC 1 chrV:13131609-13131689 ( 51) TGGCGCGC 1 chrI:8839249-8839329 ( 34) GCGCGCGC 1 chrII:10393837-10393917 ( 38) GCGCGCGC 1 chrIII:12278928-12279008 ( 61) TGGCGCGC 1 chrIV:3212096-3212176 ( 29) GCGCGCGC 1 chrI:7554763-7554843 ( 49) TCGCGCGA 1 chrIII:4918110-4918190 ( 23) ACGCGCGC 1 chrV:156541-156621 ( 29) GGGCGCGC 1 chrIII:10807382-10807462 ( 33) GGGCGCGC 1 chrIV:1309987-1310067 ( 42) TGGCGCGA 1 chrI:12183215-12183295 ( 45) TAGCGCGC 1 chrIII:5448334-5448414 ( 43) TGGCGCGA 1 chrIV:8511208-8511288 ( 72) GCGCGCGA 1 chrV:3578975-3579055 ( 33) TGGCGCGA 1 chrI:3741255-3741335 ( 64) TGGCGCGA 1 chrV:9382726-9382806 ( 33) TGGCGCGA 1 chrIII:9617098-9617178 ( 4) CCGCGCGC 1 chrIV:11142609-11142689 ( 55) ACGCGCGA 1 chrII:11782689-11782769 ( 47) ACGCGCGA 1 chrIII:7074143-7074223 ( 39) ACGCGCGA 1 chrII:3680522-3680602 ( 6) GAGCGCGC 1 chrIV:14070346-14070426 ( 62) GAGCGCGC 1 chrI:13812432-13812512 ( 43) GAGCGCGC 1 chrV:4063695-4063775 ( 10) GAGCGCGC 1 chrIII:491259-491339 ( 48) GAGCGCGC 1 chrIV:2670814-2670894 ( 52) TAGCGCGA 1 chrIII:11565755-11565835 ( 54) GAGCGCGC 1 chrIII:7952245-7952325 ( 68) TAGCGCGA 1 chrIV:17273883-17273963 ( 57) TAGCGCGA 1 chrIII:2331387-2331467 ( 44) TCGCGCCC 1 chrI:7570747-7570827 ( 33) GAGCGCGC 1 chrV:1049529-1049609 ( 11) GAGCGCGC 1 chrV:4890132-4890212 ( 66) TCGCGCGT 1 chrV:14734503-14734583 ( 24) TCGCGCGT 1 chrII:12284183-12284263 ( 32) TTGCGCGC 1 chrI:1895077-1895157 ( 65) TTGCGCGC 1 chrIV:7477870-7477950 ( 58) AGGCGCGA 1 chrIV:7796854-7796934 ( 66) AGGCGCGA 1 chrV:12271638-12271718 ( 46) CCGCGCGA 1 chrIII:1207995-1208075 ( 29) AAGCGCGC 1 chrI:8082966-8083046 ( 32) CGGCGCGC 1 chrII:13596734-13596814 ( 54) GAGCGCGA 1 chrIII:6442665-6442745 ( 36) TCGCGCCA 1 chrI:3931916-3931996 ( 45) GAGCGCGA 1 chrI:871954-872034 ( 59) GAGCGCGA 1 chrIII:4291438-4291518 ( 17) TGGCGCCC 1 chrV:13312445-13312525 ( 12) TCGCGCCA 1 chrI:10565995-10566075 ( 7) TCGCGCCA 1 chrI:10687175-10687255 ( 70) TGGCGCGT 1 chrV:6838766-6838846 ( 49) AAGCGCGA 1 chrIV:9777713-9777793 ( 50) CGGCGCGA 1 chrI:4765581-4765661 ( 13) ACGCGCCC 1 chrIII:8101101-8101181 ( 9) CAGCGCGC 1 chrI:13628619-13628699 ( 70) CGGCGCGA 1 chrII:2204236-2204316 ( 54) CGGCGCGA 1 chrI:3600842-3600922 ( 45) ACGCGCCC 1 chrII:8276246-8276326 ( 24) ACGCGCCC 1 chrV:5204339-5204419 ( 21) ACGCGCGT 1 chrIII:7068796-7068876 ( 65) TGGCGCCA 1 chrIII:4489094-4489174 ( 1) TCGCGCAA 1 chrIII:12152320-12152400 ( 33) GGGCGCGT 1 chrIV:13512317-13512397 ( 35) TCCCGCGC 1 chrI:2306846-2306926 ( 54) TCCCGCGC 1 chrV:6043437-6043517 ( 25) ACGCGCCA 1 chrI:3866568-3866648 ( 58) CCGCGCCC 1 chrIV:1177846-1177926 ( 20) TCCCGCGC 1 chrI:12966433-12966513 ( 39) GGGCGCCA 1 chrI:6109753-6109833 ( 3) TAGCGCCA 1 chrII:13036875-13036955 ( 27) GGGCGCAC 1 chrII:2638242-2638322 ( 33) GAGCGCGT 1 chrI:6358582-6358662 ( 14) TAGCGCAC 1 chrI:12732972-12733052 ( 48) GAGCGCGT 1 chrI:10478249-10478329 ( 51) GGGCGCAC 1 chrIII:2805250-2805330 ( 44) GGGCGCAC 1 chrV:8773946-8774026 ( 72) GGGCGCAC 1 chrV:8223-8303 ( 67) TTGCGCCC 1 chrIII:9089610-9089690 ( 7) GGGCGCAC 1 chrV:6593862-6593942 ( 58) ACGCGCGG 1 chrIV:9403912-9403992 ( 52) GAGCGCGT 1 chrI:5871960-5872040 ( 70) TGGCGCAA 1 chrIV:5731761-5731841 ( 21) TTGCGCGT 1 chrX:7340552-7340632 ( 9) TTGCGCGT 1 chrIII:3705110-3705190 ( 30) TTGCGCGT 1 chrII:2059160-2059240 ( 43) AAGCGCCC 1 chrII:386113-386193 ( 39) TTGCGCGT 1 chrIII:10114817-10114897 ( 4) TTGCGCGT 1 chrII:7880560-7880640 ( 44) TCGCGGGA 1 chrIII:10642950-10643030 ( 71) GAGCGCCA 1 chrI:3481533-3481613 ( 14) TCGCGCTC 1 chrIV:7149364-7149444 ( 68) ACGCGCAA 1 chrI:14405729-14405809 ( 56) ACGCGCAA 1 chrV:9930787-9930867 ( 2) CCGCGCAC 1 chrI:6038163-6038243 ( 33) TCGCGCTC 1 chrX:10018436-10018516 ( 47) TTGCGCCA 1 chrII:9706366-9706446 ( 44) TGGCGCCT 1 chrIV:9386185-9386265 ( 43) GAGCGCAC 1 chrII:6536094-6536174 ( 45) GAGCGCAC 1 chrV:8302687-8302767 ( 30) AGGCGCGG 1 chrII:4828229-4828309 ( 19) ACCCGCGC 1 chrI:10185722-10185802 ( 68) GAGCGCAC 1 chrI:13840069-13840149 ( 33) AAGCGCCA 1 chrIII:7584424-7584504 ( 63) ACGCGGGC 1 chrIII:13307265-13307345 ( 10) TCGCGCCG 1 chrII:14234544-14234624 ( 43) CGGCGCCA 1 chrI:4829917-4829997 ( 32) GAGCGCGG 1 chrII:13083891-13083971 ( 51) AAGCGCCA 1 chrV:5596522-5596602 ( 46) GAGCGCGG 1 chrII:9242972-9243052 ( 11) CCGCGCAA 1 chrI:10788778-10788858 ( 23) TGGCGGGA 1 chrIII:472123-472203 ( 66) TGGCGGGA 1 chrI:128343-128423 ( 63) TGGCGGGA 1 chrI:4185245-4185325 ( 52) TGGCGGGA 1 chrII:10714378-10714458 ( 71) AAGCGCGG 1 chrII:6974165-6974245 ( 46) ATGCGCGT 1 chrI:3438944-3439024 ( 16) ATGCGCGT 1 chrIII:8628557-8628637 ( 4) ATGCGCGT 1 chrV:1893039-1893119 ( 43) TGGCGCCG 1 chrII:6321170-6321250 ( 32) ACGCGCTC 1 chrIII:6379216-6379296 ( 70) ACGCGGGA 1 chrIV:3213585-3213665 ( 14) ACGCGCTC 1 chrIII:1533241-1533321 ( 30) ACGCGCTC 1 chrV:5687357-5687437 ( 48) ACGCGCTC 1 chrIII:902050-902130 ( 28) ACGCGCTC 1 chrX:15241363-15241443 ( 62) GGCCGCGA 1 chrI:10560201-10560281 ( 57) TTGCGCAA 1 chrI:5274290-5274370 ( 16) TCCCGCGT 1 chrIV:11822603-11822683 ( 53) TCGCGCAG 1 chrIII:6615209-6615289 ( 25) TCCCGCGT 1 chrIV:874834-874914 ( 49) GGGCGCTC 1 chrIII:10905333-10905413 ( 23) CTGCGCCC 1 chrI:3223024-3223104 ( 55) ATGCGCCA 1 chrI:13367756-13367836 ( 36) GGGCGGGA 1 chrI:9274737-9274817 ( 30) GAGCGGGC 1 chrV:15395491-15395571 ( 43) CCCCGCGA 1 chrX:13729884-13729964 ( 67) TCGCGGGT 1 chrI:2433704-2433784 ( 10) ACGCGCCG 1 chrI:10667080-10667160 ( 30) ACGCGCAT 1 chrV:5939675-5939755 ( 47) CTGCGCGT 1 chrII:1344721-1344801 ( 19) TCCCGCCA 1 chrII:12738948-12739028 ( 44) GTGCGCAA 1 chrV:8031328-8031408 ( 33) GGGCGCAT 1 chrII:4333170-4333250 ( 52) TCCCGCCA 1 chrII:11824032-11824112 ( 32) GAGCGGGA 1 chrIV:7632684-7632764 ( 11) TGCCGCGT 1 chrII:11968402-11968482 ( 49) GAGCGGGA 1 chrII:11578532-11578612 ( 36) TCGCGGAC 1 chrII:31704-31784 ( 11) TTGCGGGA 1 chrI:8027954-8028034 ( 32) AGGCGCAT 1 chrII:7025620-7025700 ( 54) TTGCGCTC 1 chrV:5433161-5433241 ( 39) TTGCGCTC 1 chrI:3982887-3982967 ( 9) TCCCGCGG 1 chrV:11079038-11079118 ( 53) ATGCGCAA 1 chrII:6197039-6197119 ( 52) TCGCGCTT 1 chrV:7854119-7854199 ( 13) AGGCGCAT 1 chrI:10173226-10173306 ( 69) CGCCGCGA 1 chrIV:2773516-2773596 ( 73) CGGCGGGA 1 chrV:14992881-14992961 ( 20) TGCCGCCA 1 chrIII:6869461-6869541 ( 17) GAGCGCAT 1 chrI:534299-534379 ( 46) CGGCGGGA 1 chrI:3684596-3684676 ( 73) ACGCGCAG 1 chrIV:13353377-13353457 ( 20) TACCGCGT 1 chrII:5501452-5501532 ( 33) TGGCGGCA 1 chrI:9581586-9581666 ( 67) TGGCGGCA 1 chrIII:4922165-4922245 ( 6) TGCCGCAC 1 chrV:15578507-15578587 ( 24) TTGCGCCG 1 chrI:8487402-8487482 ( 49) CACCGCGA 1 chrIV:15028997-15029077 ( 51) CACCGCGA 1 chrIV:10368011-10368091 ( 55) ATGCGCCT 1 chrI:6565999-6566079 ( 54) ATGCGCCT 1 chrIII:5190816-5190896 ( 16) GTGCGCTC 1 chrI:12920721-12920801 ( 5) CAGCGCTC 1 chrV:1472184-1472264 ( 34) AGGCGCAG 1 chrX:2258548-2258628 ( 44) TGGCGGGG 1 chrII:8661692-8661772 ( 33) TACCGCAC 1 chrX:1845595-1845675 ( 35) GAGCGCAG 1 chrII:10553884-10553964 ( 66) CGCCGCGT 1 chrIII:7104176-7104256 ( 43) TCCCGCCG 1 chrI:3876917-3876997 ( 53) TCCCGCAT 1 chrII:5377763-5377843 ( 33) AACCGCCA 1 chrIII:8782232-8782312 ( 32) ATCCGCCC 1 chrIV:13231549-13231629 ( 28) TTGCGGAC 1 chrII:8457581-8457661 ( 16) TTGCGCTT 1 chrIV:4510993-4511073 ( 1) ATGCGGCC 1 chrI:7581914-7581994 ( 20) CAGCGGGT 1 chrIII:7357538-7357618 ( 13) CACCGCCA 1 chrIII:11774653-11774733 ( 50) CACCGCCA 1 chrIV:11856427-11856507 ( 50) GTGCGGCA 1 chrX:16617858-16617938 ( 40) GGCCGGGA 1 chrIII:6489061-6489141 ( 60) TCACGCAC 1 chrIII:7712043-7712123 ( 26) ACACGCCA 1 chrX:8955887-8955967 ( 54) CCACGCCC 1 chrX:16503159-16503239 ( 56) GCACGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DVGCGCGM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 6.9783 E= 5.0e-064 -32 -86 11 57 -29 76 19 -94 -384 -75 195 -1433 -1433 218 -1433 -1433 -1433 -1433 218 -1433 -1433 200 -92 -1433 -76 -8 134 -204 35 85 -151 -72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DVGCGCGM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 206 E= 5.0e-064 0.223301 0.121359 0.237864 0.417476 0.228155 0.373786 0.252427 0.145631 0.019417 0.131068 0.849515 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.883495 0.116505 0.000000 0.165049 0.208738 0.558252 0.067961 0.354369 0.398058 0.077670 0.169903 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DVGCGCGM MEME-1 regular expression -------------------------------------------------------------------------------- [TGA][CGA]GCGC[GC][CA] -------------------------------------------------------------------------------- Time 5.40 secs. ******************************************************************************** ******************************************************************************** MOTIF WTTYRAAH MEME-2 width = 8 sites = 104 llr = 695 E-value = 7.8e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTTYRAAH MEME-2 Description -------------------------------------------------------------------------------- Simplified A 5:::4aa4 pos.-specific C :::32::2 probability G ::::5::1 matrix T 5aa7:::3 bits 2.2 2.0 1.7 ** ** 1.5 ** ** Relative 1.3 ** ** Entropy 1.1 *** ** (9.6 bits) 0.9 *** ** 0.7 ******* 0.4 ******* 0.2 ******* 0.0 -------- Multilevel TTTTGAAA consensus A CA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTYRAAH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:11578532-11578612 53 2.95e-05 CTATTTTGAA TTTTGAAA CTAAACAAAA chrII:14234544-14234624 58 2.95e-05 CCAATTCGAA TTTTGAAA GGTTTTTTCA chrI:3741255-3741335 73 2.95e-05 TTGGCGCGAG TTTTGAAA chrI:10185722-10185802 14 2.95e-05 TTGTAATTAA TTTTGAAA ATTATATTTT chrIII:7712043-7712123 3 8.85e-05 AA ATTTGAAA ATAAGAGAGA chrI:3368666-3368746 37 8.85e-05 TCGCGCGCAA ATTTGAAA AAGTACGCAA chrIII:2805250-2805330 11 8.85e-05 TGAAAACTAA ATTTGAAA CACCCGCGCA chrIII:4291438-4291518 4 8.85e-05 CAA ATTTGAAA ATTTTTGGCG chrII:13083891-13083971 16 8.85e-05 AAAAAACTAA ATTTGAAA CAAGCGCCAA chrIII:12278928-12279008 69 8.85e-05 tttggcgcgc atttgaaa aaAA chrV:6593862-6593942 46 8.85e-05 AAGGTTTCAA TTTTGAAT CACCACGCGC chrII:2289598-2289678 2 8.85e-05 C TTTTGAAT GATCGCCTTT chrII:31704-31784 54 1.64e-04 ATTTTTTCGA TTTCGAAA TCGATTTCAA chrX:8955887-8955967 8 1.64e-04 CAATTTT TTTCGAAA ACAAAGACAA chrIII:7104176-7104256 33 1.64e-04 caaaacaaaa ATTTGAAT TTTCCCGCCG chrV:11079038-11079118 36 1.64e-04 ATCGCAAATA TTTCGAAA TTCCTTCATA chrX:11792094-11792174 40 1.64e-04 AGTCGAAAGA TTTCGAAA TGACAAAATT chrIV:9777713-9777793 59 1.64e-04 ACGGCGCGAA TTTCGAAA TAGAACAACG chrII:13725924-13726004 49 1.64e-04 CAATTGTGCC ATTTGAAT TTTTTCCATT chrV:5204339-5204419 12 1.64e-04 AAAAAACTAA ATTTGAAT TACGCGCGTA chrI:3876917-3876997 62 1.64e-04 CTCCCGCATT TTTCGAAA ATTAAATTTT chrII:12284183-12284263 59 1.64e-04 CGCAGCGACT TTTCGAAA ATCTTCAGAT chrIII:9570985-9571065 13 1.64e-04 CAGTTTCCCT ATTTGAAT ATCCACCAAA chrV:12271638-12271718 63 1.64e-04 AAAGAATTCG TTTTGAAC ATAACAAGGA chrV:9382726-9382806 45 1.64e-04 gcgcgaaata tttcgaaa tcaaatttgt chrI:1895077-1895157 21 1.64e-04 ATATTTCCCA ATTTGAAT ACCCGCCAAT chrIV:1177846-1177926 28 1.64e-04 ACTCCCGCGC ATTTGAAT TAACGACACT chrIII:4035131-4035211 18 1.64e-04 AATTCTCACA TTTCGAAA TTTCGCAATA chrI:12732972-12733052 30 2.02e-04 AATTCGATTT TTTTAAAA AGTTGCATTG chrII:7880560-7880640 58 2.02e-04 GGGAAATCTG TTTTAAAA ATGTTTGCCC chrIV:1309987-1310067 32 2.02e-04 TGTTTAGCGC TTTTAAAA ATTGGCGCGA chrII:11782689-11782769 64 2.02e-04 AAAAAATTAA TTTTAAAA TTCGTGCAT chrIII:4922165-4922245 67 2.02e-04 AAAAATACAA TTTTAAAA TCGTGC chrV:1893039-1893119 34 2.71e-04 ACTGGTTTCA ATTCGAAA CTGGCGCCGC chrIII:6615209-6615289 16 2.71e-04 TCGCTTATAA ATTTGAAC GTCCCGCGTT chrII:4828229-4828309 11 2.71e-04 AAAAAATAAA ATTTGAAC ACCCGCGCAT chrIV:17273883-17273963 72 2.71e-04 CGAATTTAAA ATTTGAAC G chrV:6043437-6043517 17 2.71e-04 AAAAACTCGA ATTTGAAC ACGCGCCAAT chrIV:8511208-8511288 57 2.71e-04 CACTAATGCA ATTTGAAC GAGAAATGCG chrI:13367756-13367836 44 2.71e-04 TTGGGCGGGA ATTTGAAC TTTTTTAAAT chrIII:6869461-6869541 55 3.46e-04 GAACCGCGAA ATTTAAAA TCAAAGCCTT chrM:13144-13224 66 3.46e-04 AAAAATTACT ATTTAAAA AGGttaa chrI:2306846-2306926 37 3.87e-04 AGGGCTGACA ATTCGAAT GGAAACGATT chrII:5501452-5501532 42 3.87e-04 CTGGCGGCAA TTTCGAAC GTGCATGCCA chrV:18086934-18087014 9 3.87e-04 TTCTTCCA ATTCGAAT TTCGCGCGCA chrIII:1207995-1208075 72 3.87e-04 TGGGCGCGGA ATTCGAAT T chrV:156541-156621 59 4.83e-04 GTTTCTGGCT ATTTAAAT TGTGTTTTTT chrII:9242972-9243052 1 4.83e-04 . TTTTAAAC TTCCGCGCAA chrX:4409692-4409772 16 4.83e-04 GCTGATACTC TTTCAAAA GTTTATGGGA chrII:13722926-13723006 73 4.83e-04 GACGCGCGTA TTTCAAAA chrIV:874834-874914 16 4.83e-04 AAAAAACTAA TTTTAAAC TCCCGCCGTC chrV:6838766-6838846 2 4.83e-04 T TTTTAAAC TGTCCCCAAA chrII:8162393-8162473 28 4.83e-04 GCTTGATCAA ATTTAAAT TTTAGCCGTA chrII:8276246-8276326 15 4.83e-04 AAAAAAAGAT ATTTAAAT CACGCGCCCT chrI:3684596-3684676 12 4.83e-04 CACGGGCCTT TTTCAAAA ATAAACTATT chrX:1845595-1845675 13 5.31e-04 GAGAATAGTG TTTTCAAa gagacgggag chrI:12920721-12920801 23 5.31e-04 AATTTCGCAA TTTTCAAA GCTAGAAAGC chrX:10018436-10018516 2 5.31e-04 g attcgaac ctacaatctt chrI:5274290-5274370 36 6.42e-04 TATTTACGAA ATTCAAAA AATGGCGGCG chrII:6321170-6321250 69 6.42e-04 GGGTATTCAA ATTCAAAA CCCA chrIII:7724599-7724679 6 6.42e-04 GGCTT TTTTGAAG ATTGGGAAAT chrII:10714378-10714458 33 6.42e-04 ATGGACGAGG TTTTGAAG AGAGGGGAAA chrV:15395491-15395571 32 6.42e-04 CGGGGGGCAA TTTCAAAT ACACCCCGCG chrI:3438944-3439024 1 6.42e-04 . TTTTGAAG TCCGTGAATG chrV:5939675-5939755 5 6.42e-04 TCTA TTTCAAAT TCCCTCTAAA chrIV:11142609-11142689 64 6.42e-04 CACGCGCGAA ATTTAAAC AATAGTTTT chrIV:2275742-2275822 18 6.42e-04 GTACTACACA TTTCAAAT GGAGGGAGTT chrV:5433161-5433241 6 7.01e-04 AATTA ATTTCAAA CTCGTGCCAA chrI:10478249-10478329 66 7.01e-04 CACTTTCATG TTTTCAAT TGAGCTT chrI:7581914-7581994 40 7.01e-04 ATTGACCGAA TTTTCAAT GTCAAAAACA chrIV:9932208-9932288 71 7.01e-04 GTCAAAAATT TTTTCAAT TA chrI:8839249-8839329 60 7.01e-04 tcactctctc tTTTCAAT TGACCGGTCT chrII:6536094-6536174 11 7.01e-04 CGGAAATTAC ATTTCAAA CCACGCGCTC chrI:128343-128423 40 7.01e-04 GCGCCGAAAA TTTTCAAT TTTTGGTGGT chrIII:11565755-11565835 21 7.01e-04 CAAAACCCCC ATTTCAAA CTCCCGCGCT chrV:3578975-3579055 57 7.01e-04 TGTTTTCCAA TTTTCAAT CATGGCGCCA chrII:10393837-10393917 56 7.01e-04 GAGCGGCAAT TTTTCAAT TATTCCAATC chrI:10633198-10633278 12 7.76e-04 CATTTAATTC ATTCAAAT AAAAATAGAC chrIII:6442665-6442745 26 7.76e-04 ATTTTTACAA ATTCAAAT ATTCGCGCCA chrI:2433704-2433784 1 7.76e-04 . TTTCAAAC AACGCGCCGA chrIII:4918110-4918190 66 7.76e-04 TTGCGCGGGC ATTCAAAT TGGGGTT chrIII:2331387-2331467 5 7.76e-04 TTCA ATTCAAAT CCGTGTGATT chrI:6038163-6038243 24 7.76e-04 TAAACCCTCA ATTCAAAT TTCGCGCTCT chrI:519978-520058 5 7.76e-04 TAAA ATTCAAAT GCACAACGTT chrII:10350641-10350721 55 7.76e-04 TTGGAGCGAA ATTCAAAT CTTGATATTT chrV:8031328-8031408 66 8.52e-04 GAGCGTTAAT TTTTCAAC AGATTGA chrIII:12152320-12152400 47 8.52e-04 GCGTTTGCAC TTTTCAAC TTCTGGCTTT chrI:6109753-6109833 24 8.52e-04 ATGTTTGTTT TTTTCAAC GAGTCCGCAA chrI:12520524-12520604 40 8.93e-04 TCCTCCCGTC TTTCGAAG AAAAAAAATG chrI:9581586-9581666 30 8.93e-04 AAGATTGCAA ATTCAAAC TGCCACGGAA chrV:15059698-15059778 23 8.93e-04 CGCATTTCTC ATTCAAAC AGCAAGGTTT chrII:11578013-11578093 22 9.92e-04 CTACTGTAGT TTTTAAAG GCACATAGGT chrI:13628619-13628699 33 9.92e-04 TAAATTTCGT TTTTAAAG GCGCACGCCG chrI:3600842-3600922 62 9.92e-04 CCATCGCACT TTTCCAAT TGGCGGGGAT chrIV:13512317-13512397 67 1.08e-03 GTACTGTAGA ATTTAAAG GCGCAT chrII:2059160-2059240 69 1.08e-03 GAGCATAATG ATTTAAAG CGAT chrIV:7796854-7796934 4 1.08e-03 AAC ATTTAAAG GCACATAACT chrIV:17461490-17461570 68 1.08e-03 TTGCACACAT TTTCCAAC CGTAC chrI:534299-534379 54 1.08e-03 CTCGGCGGGA ATTTAAAG AGAAATGGCA chrV:14734503-14734583 7 1.21e-03 ATTTTT GTTTGAAA TATGAGGTTT chrIII:1533241-1533321 64 1.21e-03 GTTGGCGGGT GTTTGAAA TGGAAATTC chrII:2204236-2204316 63 1.26e-03 TCGGCGCGAG GTTTGAAT TGGGAAACCT chrIII:7074143-7074223 48 1.26e-03 TACGCGCGAA GTTTGAAT AGGACTTTCT chrIII:5448334-5448414 53 1.69e-03 TGGCGCGAGT TTTTGCAA TGCAAACGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTYRAAH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:11578532-11578612 3e-05 52_[+2]_20 chrII:14234544-14234624 3e-05 57_[+2]_15 chrI:3741255-3741335 3e-05 72_[+2] chrI:10185722-10185802 3e-05 13_[+2]_59 chrIII:7712043-7712123 8.9e-05 2_[+2]_70 chrI:3368666-3368746 8.9e-05 36_[+2]_36 chrIII:2805250-2805330 8.9e-05 10_[+2]_62 chrIII:4291438-4291518 8.9e-05 3_[+2]_69 chrII:13083891-13083971 8.9e-05 15_[+2]_57 chrIII:12278928-12279008 8.9e-05 68_[+2]_4 chrV:6593862-6593942 8.9e-05 45_[+2]_27 chrII:2289598-2289678 8.9e-05 1_[+2]_71 chrII:31704-31784 0.00016 53_[+2]_19 chrX:8955887-8955967 0.00016 7_[+2]_65 chrIII:7104176-7104256 0.00016 32_[+2]_40 chrV:11079038-11079118 0.00016 35_[+2]_37 chrX:11792094-11792174 0.00016 39_[+2]_33 chrIV:9777713-9777793 0.00016 58_[+2]_14 chrII:13725924-13726004 0.00016 48_[+2]_24 chrV:5204339-5204419 0.00016 11_[+2]_61 chrI:3876917-3876997 0.00016 61_[+2]_11 chrII:12284183-12284263 0.00016 58_[+2]_14 chrIII:9570985-9571065 0.00016 12_[+2]_60 chrV:12271638-12271718 0.00016 62_[+2]_10 chrV:9382726-9382806 0.00016 44_[+2]_28 chrI:1895077-1895157 0.00016 20_[+2]_52 chrIV:1177846-1177926 0.00016 27_[+2]_45 chrIII:4035131-4035211 0.00016 17_[+2]_55 chrI:12732972-12733052 0.0002 29_[+2]_43 chrII:7880560-7880640 0.0002 57_[+2]_15 chrIV:1309987-1310067 0.0002 31_[+2]_41 chrII:11782689-11782769 0.0002 63_[+2]_9 chrIII:4922165-4922245 0.0002 66_[+2]_6 chrV:1893039-1893119 0.00027 33_[+2]_39 chrIII:6615209-6615289 0.00027 15_[+2]_57 chrII:4828229-4828309 0.00027 10_[+2]_62 chrIV:17273883-17273963 0.00027 71_[+2]_1 chrV:6043437-6043517 0.00027 16_[+2]_56 chrIV:8511208-8511288 0.00027 56_[+2]_16 chrI:13367756-13367836 0.00027 43_[+2]_29 chrIII:6869461-6869541 0.00035 54_[+2]_18 chrM:13144-13224 0.00035 65_[+2]_7 chrI:2306846-2306926 0.00039 36_[+2]_36 chrII:5501452-5501532 0.00039 41_[+2]_31 chrV:18086934-18087014 0.00039 8_[+2]_64 chrIII:1207995-1208075 0.00039 71_[+2]_1 chrV:156541-156621 0.00048 58_[+2]_14 chrII:9242972-9243052 0.00048 [+2]_72 chrX:4409692-4409772 0.00048 15_[+2]_57 chrII:13722926-13723006 0.00048 72_[+2] chrIV:874834-874914 0.00048 15_[+2]_57 chrV:6838766-6838846 0.00048 1_[+2]_71 chrII:8162393-8162473 0.00048 27_[+2]_45 chrII:8276246-8276326 0.00048 14_[+2]_58 chrI:3684596-3684676 0.00048 11_[+2]_61 chrX:1845595-1845675 0.00053 12_[+2]_60 chrI:12920721-12920801 0.00053 22_[+2]_50 chrX:10018436-10018516 0.00053 1_[+2]_71 chrI:5274290-5274370 0.00064 35_[+2]_37 chrII:6321170-6321250 0.00064 68_[+2]_4 chrIII:7724599-7724679 0.00064 5_[+2]_67 chrII:10714378-10714458 0.00064 32_[+2]_40 chrV:15395491-15395571 0.00064 31_[+2]_41 chrI:3438944-3439024 0.00064 [+2]_72 chrV:5939675-5939755 0.00064 4_[+2]_68 chrIV:11142609-11142689 0.00064 63_[+2]_9 chrIV:2275742-2275822 0.00064 17_[+2]_55 chrV:5433161-5433241 0.0007 5_[+2]_67 chrI:10478249-10478329 0.0007 65_[+2]_7 chrI:7581914-7581994 0.0007 39_[+2]_33 chrIV:9932208-9932288 0.0007 70_[+2]_2 chrI:8839249-8839329 0.0007 59_[+2]_13 chrII:6536094-6536174 0.0007 10_[+2]_62 chrI:128343-128423 0.0007 39_[+2]_33 chrIII:11565755-11565835 0.0007 20_[+2]_52 chrV:3578975-3579055 0.0007 56_[+2]_16 chrII:10393837-10393917 0.0007 55_[+2]_17 chrI:10633198-10633278 0.00078 11_[+2]_61 chrIII:6442665-6442745 0.00078 25_[+2]_47 chrI:2433704-2433784 0.00078 [+2]_72 chrIII:4918110-4918190 0.00078 65_[+2]_7 chrIII:2331387-2331467 0.00078 4_[+2]_68 chrI:6038163-6038243 0.00078 23_[+2]_49 chrI:519978-520058 0.00078 4_[+2]_68 chrII:10350641-10350721 0.00078 54_[+2]_18 chrV:8031328-8031408 0.00085 65_[+2]_7 chrIII:12152320-12152400 0.00085 46_[+2]_26 chrI:6109753-6109833 0.00085 23_[+2]_49 chrI:12520524-12520604 0.00089 39_[+2]_33 chrI:9581586-9581666 0.00089 29_[+2]_43 chrV:15059698-15059778 0.00089 22_[+2]_50 chrII:11578013-11578093 0.00099 21_[+2]_51 chrI:13628619-13628699 0.00099 32_[+2]_40 chrI:3600842-3600922 0.00099 61_[+2]_11 chrIV:13512317-13512397 0.0011 66_[+2]_6 chrII:2059160-2059240 0.0011 68_[+2]_4 chrIV:7796854-7796934 0.0011 3_[+2]_69 chrIV:17461490-17461570 0.0011 67_[+2]_5 chrI:534299-534379 0.0011 53_[+2]_19 chrV:14734503-14734583 0.0012 6_[+2]_66 chrIII:1533241-1533321 0.0012 63_[+2]_9 chrII:2204236-2204316 0.0013 62_[+2]_10 chrIII:7074143-7074223 0.0013 47_[+2]_25 chrIII:5448334-5448414 0.0017 52_[+2]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTYRAAH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTTYRAAH width=8 seqs=104 chrII:11578532-11578612 ( 53) TTTTGAAA 1 chrII:14234544-14234624 ( 58) TTTTGAAA 1 chrI:3741255-3741335 ( 73) TTTTGAAA 1 chrI:10185722-10185802 ( 14) TTTTGAAA 1 chrIII:7712043-7712123 ( 3) ATTTGAAA 1 chrI:3368666-3368746 ( 37) ATTTGAAA 1 chrIII:2805250-2805330 ( 11) ATTTGAAA 1 chrIII:4291438-4291518 ( 4) ATTTGAAA 1 chrII:13083891-13083971 ( 16) ATTTGAAA 1 chrIII:12278928-12279008 ( 69) ATTTGAAA 1 chrV:6593862-6593942 ( 46) TTTTGAAT 1 chrII:2289598-2289678 ( 2) TTTTGAAT 1 chrII:31704-31784 ( 54) TTTCGAAA 1 chrX:8955887-8955967 ( 8) TTTCGAAA 1 chrIII:7104176-7104256 ( 33) ATTTGAAT 1 chrV:11079038-11079118 ( 36) TTTCGAAA 1 chrX:11792094-11792174 ( 40) TTTCGAAA 1 chrIV:9777713-9777793 ( 59) TTTCGAAA 1 chrII:13725924-13726004 ( 49) ATTTGAAT 1 chrV:5204339-5204419 ( 12) ATTTGAAT 1 chrI:3876917-3876997 ( 62) TTTCGAAA 1 chrII:12284183-12284263 ( 59) TTTCGAAA 1 chrIII:9570985-9571065 ( 13) ATTTGAAT 1 chrV:12271638-12271718 ( 63) TTTTGAAC 1 chrV:9382726-9382806 ( 45) TTTCGAAA 1 chrI:1895077-1895157 ( 21) ATTTGAAT 1 chrIV:1177846-1177926 ( 28) ATTTGAAT 1 chrIII:4035131-4035211 ( 18) TTTCGAAA 1 chrI:12732972-12733052 ( 30) TTTTAAAA 1 chrII:7880560-7880640 ( 58) TTTTAAAA 1 chrIV:1309987-1310067 ( 32) TTTTAAAA 1 chrII:11782689-11782769 ( 64) TTTTAAAA 1 chrIII:4922165-4922245 ( 67) TTTTAAAA 1 chrV:1893039-1893119 ( 34) ATTCGAAA 1 chrIII:6615209-6615289 ( 16) ATTTGAAC 1 chrII:4828229-4828309 ( 11) ATTTGAAC 1 chrIV:17273883-17273963 ( 72) ATTTGAAC 1 chrV:6043437-6043517 ( 17) ATTTGAAC 1 chrIV:8511208-8511288 ( 57) ATTTGAAC 1 chrI:13367756-13367836 ( 44) ATTTGAAC 1 chrIII:6869461-6869541 ( 55) ATTTAAAA 1 chrM:13144-13224 ( 66) ATTTAAAA 1 chrI:2306846-2306926 ( 37) ATTCGAAT 1 chrII:5501452-5501532 ( 42) TTTCGAAC 1 chrV:18086934-18087014 ( 9) ATTCGAAT 1 chrIII:1207995-1208075 ( 72) ATTCGAAT 1 chrV:156541-156621 ( 59) ATTTAAAT 1 chrII:9242972-9243052 ( 1) TTTTAAAC 1 chrX:4409692-4409772 ( 16) TTTCAAAA 1 chrII:13722926-13723006 ( 73) TTTCAAAA 1 chrIV:874834-874914 ( 16) TTTTAAAC 1 chrV:6838766-6838846 ( 2) TTTTAAAC 1 chrII:8162393-8162473 ( 28) ATTTAAAT 1 chrII:8276246-8276326 ( 15) ATTTAAAT 1 chrI:3684596-3684676 ( 12) TTTCAAAA 1 chrX:1845595-1845675 ( 13) TTTTCAAA 1 chrI:12920721-12920801 ( 23) TTTTCAAA 1 chrX:10018436-10018516 ( 2) ATTCGAAC 1 chrI:5274290-5274370 ( 36) ATTCAAAA 1 chrII:6321170-6321250 ( 69) ATTCAAAA 1 chrIII:7724599-7724679 ( 6) TTTTGAAG 1 chrII:10714378-10714458 ( 33) TTTTGAAG 1 chrV:15395491-15395571 ( 32) TTTCAAAT 1 chrI:3438944-3439024 ( 1) TTTTGAAG 1 chrV:5939675-5939755 ( 5) TTTCAAAT 1 chrIV:11142609-11142689 ( 64) ATTTAAAC 1 chrIV:2275742-2275822 ( 18) TTTCAAAT 1 chrV:5433161-5433241 ( 6) ATTTCAAA 1 chrI:10478249-10478329 ( 66) TTTTCAAT 1 chrI:7581914-7581994 ( 40) TTTTCAAT 1 chrIV:9932208-9932288 ( 71) TTTTCAAT 1 chrI:8839249-8839329 ( 60) TTTTCAAT 1 chrII:6536094-6536174 ( 11) ATTTCAAA 1 chrI:128343-128423 ( 40) TTTTCAAT 1 chrIII:11565755-11565835 ( 21) ATTTCAAA 1 chrV:3578975-3579055 ( 57) TTTTCAAT 1 chrII:10393837-10393917 ( 56) TTTTCAAT 1 chrI:10633198-10633278 ( 12) ATTCAAAT 1 chrIII:6442665-6442745 ( 26) ATTCAAAT 1 chrI:2433704-2433784 ( 1) TTTCAAAC 1 chrIII:4918110-4918190 ( 66) ATTCAAAT 1 chrIII:2331387-2331467 ( 5) ATTCAAAT 1 chrI:6038163-6038243 ( 24) ATTCAAAT 1 chrI:519978-520058 ( 5) ATTCAAAT 1 chrII:10350641-10350721 ( 55) ATTCAAAT 1 chrV:8031328-8031408 ( 66) TTTTCAAC 1 chrIII:12152320-12152400 ( 47) TTTTCAAC 1 chrI:6109753-6109833 ( 24) TTTTCAAC 1 chrI:12520524-12520604 ( 40) TTTCGAAG 1 chrI:9581586-9581666 ( 30) ATTCAAAC 1 chrV:15059698-15059778 ( 23) ATTCAAAC 1 chrII:11578013-11578093 ( 22) TTTTAAAG 1 chrI:13628619-13628699 ( 33) TTTTAAAG 1 chrI:3600842-3600922 ( 62) TTTCCAAT 1 chrIV:13512317-13512397 ( 67) ATTTAAAG 1 chrII:2059160-2059240 ( 69) ATTTAAAG 1 chrIV:7796854-7796934 ( 4) ATTTAAAG 1 chrIV:17461490-17461570 ( 68) TTTCCAAC 1 chrI:534299-534379 ( 54) ATTTAAAG 1 chrV:14734503-14734583 ( 7) GTTTGAAA 1 chrIII:1533241-1533321 ( 64) GTTTGAAA 1 chrII:2204236-2204316 ( 63) GTTTGAAT 1 chrIII:7074143-7074223 ( 48) GTTTGAAT 1 chrIII:5448334-5448414 ( 53) TTTTGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTYRAAH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.61588 E= 7.8e-015 70 -1334 -252 86 -1334 -1334 -1334 183 -1334 -1334 -1334 183 -1334 65 -1334 122 39 -43 109 -1334 183 -451 -1334 -1334 184 -1334 -1334 -1334 46 -20 -120 22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTYRAAH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 104 E= 7.8e-015 0.451923 0.000000 0.038462 0.509615 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.346154 0.000000 0.653846 0.365385 0.163462 0.471154 0.000000 0.990385 0.009615 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.384615 0.192308 0.096154 0.326923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTYRAAH MEME-2 regular expression -------------------------------------------------------------------------------- [TA]TT[TC][GA]AA[AT] -------------------------------------------------------------------------------- Time 8.90 secs. ******************************************************************************** ******************************************************************************** MOTIF GMAAAMAM MEME-3 width = 8 sites = 49 llr = 383 E-value = 1.8e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GMAAAMAM MEME-3 Description -------------------------------------------------------------------------------- Simplified A :6aaa595 pos.-specific C 34:::5:5 probability G 7:::::1: matrix T :::::::: bits 2.2 2.0 1.7 *** 1.5 *** Relative 1.3 * *** * Entropy 1.1 ******** (11.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAAAAAA consensus CC C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMAAAMAM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:10633198-10633278 44 3.23e-05 TGGGTCGGAT GCAAACAC GCTCCATGGT chrIII:5153296-5153376 25 3.23e-05 TTAAGAGTAC GCAAACAC CGCATGAAAT chrIII:6489061-6489141 50 3.23e-05 CGCAAATACT GCAAACAC CGTCACGCAC chrII:12738948-12739028 34 3.23e-05 TACACGAGAG GCAAACAC TCGTGCGCAA chrII:13596734-13596814 39 3.23e-05 TACGCAGTCC GCAAACAC CGAATGCGAG chrII:6197039-6197119 21 3.23e-05 TCGAAAGTCT GCAAACAC AGCGACGTCA chrIII:10642950-10643030 48 3.23e-05 TGCAATGTGT GCAAACAC CGTCGTGTAC chrI:10667080-10667160 14 3.23e-05 GACAATGTAC GCAAACAC CGTGTGTGAC chrIII:4291438-4291518 39 3.23e-05 CTCACATTCC GCAAACAC GCTCACGTAC chrI:5871960-5872040 50 3.23e-05 CGTAACGTAC GCAAACAC CGCGCCTGTT chrV:1893039-1893119 18 1.14e-04 AAAATTCGAA GAAAAAAC TGGTTTCAAT chrX:4490548-4490628 73 1.14e-04 TCTAGCTCCA GAAAACAA chrIII:10329924-10330004 71 1.14e-04 AATGAGAAGG GCAAACAA CG chrIII:7104176-7104256 3 1.14e-04 TG GCaaacaa ataaaaacaa chrI:3368666-3368746 11 1.14e-04 AAAAAATGGC GAAAAAAC TCAAATTTTC chrI:2306846-2306926 15 1.14e-04 AAACGAGCGG GAAAACAA TGGGAGGGCT chrII:12184953-12185033 12 1.14e-04 GAAAAAAGTT GAAAAAAC CACGAAAAAT chrI:3684596-3684676 64 1.14e-04 GGTGCAGCAG GAAAACAA AACGCGCAG chrIII:8268493-8268573 71 1.66e-04 TCGTCAAACA GAAAAAAA CT chrII:6321170-6321250 4 1.66e-04 AGT GAAAAAAA ACTAAAATGG chrI:8027954-8028034 8 1.66e-04 GCGAAAT GCAAAAAA TGAGAGAAAA chrIII:3705110-3705190 9 1.66e-04 GAAATTCC GAAAAAAA AACTGCAAAA chrIII:13307265-13307345 71 1.66e-04 CGGACCCAGT GAAAAAAA AA chrI:5357535-5357615 54 1.66e-04 AGAAAAAGAG GAAAAAAA GGAAGGAAAG chrI:12966433-12966513 14 1.66e-04 GTCATCGATT GCAAAAAA ATGATGACGA chrIII:2619736-2619816 3 1.66e-04 CA GAAAAAAA CAAAAAATTG chrI:3930529-3930609 18 1.66e-04 CATTTGCAAT GAAAAAAA AAAAAAGCGT chrIII:12278928-12279008 2 1.66e-04 c gaaaaaaa agctcccgta chrII:8276246-8276326 3 1.66e-04 GT GAAAAAAA AGATATTTAA chrI:3866568-3866648 70 1.66e-04 GCGCCCCCGC GCAAAAAA TTT chrX:9705722-9705802 1 1.66e-04 . GAAAAAAA TTGAAAAGAA chrV:14992881-14992961 52 1.99e-04 AGATCAAGAT CAAAACAC ACTTTTTGTT chrI:3438944-3439024 40 1.99e-04 CAACTGCGTA CAAAACAC CAAACTTTAC chrII:4828229-4828309 55 1.99e-04 TGTTTGCGGA CAAAACAC CTTCACTTTA chrIII:472123-472203 15 2.80e-04 AAATTGATAA CAAAACAA AATAACTGAA chrIV:874834-874914 5 2.80e-04 TTAA CAAAAAAC TAATTTTAAA chrV:6838766-6838846 15 2.80e-04 TAAACTGTCC CCAAAAAC GCCCTGATGT chrIV:11856427-11856507 41 2.80e-04 CACGGTTCCC CAAAAAAC CGTGCGGCAG chrV:6043437-6043517 5 2.80e-04 ATCG CCAAAAAC TCGAATTTGA chrII:11824032-11824112 9 3.32e-04 TAGAGAAA CAAAAAAA AGTGGCAAGA chrV:5687357-5687437 15 3.32e-04 GAAATTTTGA CAAAAAAA CTCGGCTAAA chrIII:8782232-8782312 59 3.32e-04 TCTCGCGAAA CAAAAAAA TGTAAAAGAG chrIII:491259-491339 4 3.32e-04 CCT CCAAAAAA TAGTCTGCGC chrII:10553884-10553964 21 3.32e-04 TTTTTTTCAT CAAAAAAA CACCAGCATT chrI:871954-872034 26 3.58e-04 ACCTCCCCCT GCAAACGC GCTCTATTGA chrV:8302687-8302767 16 3.58e-04 GAGAGTATTG GCAAACGC TAAACAAGGC chrIII:5448334-5448414 62 3.58e-04 TTTTTGCAAT GCAAACGC GCTCCACCGC chrIII:11774653-11774733 3 4.23e-04 GT GAAAACGA CACGTCACGT chrV:13131609-13131689 28 4.64e-04 TCTCGAAAAT GAAAAAGA AAAATAAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMAAAMAM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:10633198-10633278 3.2e-05 43_[+3]_29 chrIII:5153296-5153376 3.2e-05 24_[+3]_48 chrIII:6489061-6489141 3.2e-05 49_[+3]_23 chrII:12738948-12739028 3.2e-05 33_[+3]_39 chrII:13596734-13596814 3.2e-05 38_[+3]_34 chrII:6197039-6197119 3.2e-05 20_[+3]_52 chrIII:10642950-10643030 3.2e-05 47_[+3]_25 chrI:10667080-10667160 3.2e-05 13_[+3]_59 chrIII:4291438-4291518 3.2e-05 38_[+3]_34 chrI:5871960-5872040 3.2e-05 49_[+3]_23 chrV:1893039-1893119 0.00011 17_[+3]_55 chrX:4490548-4490628 0.00011 72_[+3] chrIII:10329924-10330004 0.00011 70_[+3]_2 chrIII:7104176-7104256 0.00011 2_[+3]_70 chrI:3368666-3368746 0.00011 10_[+3]_62 chrI:2306846-2306926 0.00011 14_[+3]_58 chrII:12184953-12185033 0.00011 11_[+3]_61 chrI:3684596-3684676 0.00011 63_[+3]_9 chrIII:8268493-8268573 0.00017 70_[+3]_2 chrII:6321170-6321250 0.00017 3_[+3]_69 chrI:8027954-8028034 0.00017 7_[+3]_65 chrIII:3705110-3705190 0.00017 8_[+3]_64 chrIII:13307265-13307345 0.00017 70_[+3]_2 chrI:5357535-5357615 0.00017 53_[+3]_19 chrI:12966433-12966513 0.00017 13_[+3]_59 chrIII:2619736-2619816 0.00017 2_[+3]_70 chrI:3930529-3930609 0.00017 17_[+3]_55 chrIII:12278928-12279008 0.00017 1_[+3]_71 chrII:8276246-8276326 0.00017 2_[+3]_70 chrI:3866568-3866648 0.00017 69_[+3]_3 chrX:9705722-9705802 0.00017 [+3]_72 chrV:14992881-14992961 0.0002 51_[+3]_21 chrI:3438944-3439024 0.0002 39_[+3]_33 chrII:4828229-4828309 0.0002 54_[+3]_18 chrIII:472123-472203 0.00028 14_[+3]_58 chrIV:874834-874914 0.00028 4_[+3]_68 chrV:6838766-6838846 0.00028 14_[+3]_58 chrIV:11856427-11856507 0.00028 40_[+3]_32 chrV:6043437-6043517 0.00028 4_[+3]_68 chrII:11824032-11824112 0.00033 8_[+3]_64 chrV:5687357-5687437 0.00033 14_[+3]_58 chrIII:8782232-8782312 0.00033 58_[+3]_14 chrIII:491259-491339 0.00033 3_[+3]_69 chrII:10553884-10553964 0.00033 20_[+3]_52 chrI:871954-872034 0.00036 25_[+3]_47 chrV:8302687-8302767 0.00036 15_[+3]_57 chrIII:5448334-5448414 0.00036 61_[+3]_11 chrIII:11774653-11774733 0.00042 2_[+3]_70 chrV:13131609-13131689 0.00046 27_[+3]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMAAAMAM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GMAAAMAM width=8 seqs=49 chrI:10633198-10633278 ( 44) GCAAACAC 1 chrIII:5153296-5153376 ( 25) GCAAACAC 1 chrIII:6489061-6489141 ( 50) GCAAACAC 1 chrII:12738948-12739028 ( 34) GCAAACAC 1 chrII:13596734-13596814 ( 39) GCAAACAC 1 chrII:6197039-6197119 ( 21) GCAAACAC 1 chrIII:10642950-10643030 ( 48) GCAAACAC 1 chrI:10667080-10667160 ( 14) GCAAACAC 1 chrIII:4291438-4291518 ( 39) GCAAACAC 1 chrI:5871960-5872040 ( 50) GCAAACAC 1 chrV:1893039-1893119 ( 18) GAAAAAAC 1 chrX:4490548-4490628 ( 73) GAAAACAA 1 chrIII:10329924-10330004 ( 71) GCAAACAA 1 chrIII:7104176-7104256 ( 3) GCAAACAA 1 chrI:3368666-3368746 ( 11) GAAAAAAC 1 chrI:2306846-2306926 ( 15) GAAAACAA 1 chrII:12184953-12185033 ( 12) GAAAAAAC 1 chrI:3684596-3684676 ( 64) GAAAACAA 1 chrIII:8268493-8268573 ( 71) GAAAAAAA 1 chrII:6321170-6321250 ( 4) GAAAAAAA 1 chrI:8027954-8028034 ( 8) GCAAAAAA 1 chrIII:3705110-3705190 ( 9) GAAAAAAA 1 chrIII:13307265-13307345 ( 71) GAAAAAAA 1 chrI:5357535-5357615 ( 54) GAAAAAAA 1 chrI:12966433-12966513 ( 14) GCAAAAAA 1 chrIII:2619736-2619816 ( 3) GAAAAAAA 1 chrI:3930529-3930609 ( 18) GAAAAAAA 1 chrIII:12278928-12279008 ( 2) GAAAAAAA 1 chrII:8276246-8276326 ( 3) GAAAAAAA 1 chrI:3866568-3866648 ( 70) GCAAAAAA 1 chrX:9705722-9705802 ( 1) GAAAAAAA 1 chrV:14992881-14992961 ( 52) CAAAACAC 1 chrI:3438944-3439024 ( 40) CAAAACAC 1 chrII:4828229-4828309 ( 55) CAAAACAC 1 chrIII:472123-472203 ( 15) CAAAACAA 1 chrIV:874834-874914 ( 5) CAAAAAAC 1 chrV:6838766-6838846 ( 15) CCAAAAAC 1 chrIV:11856427-11856507 ( 41) CAAAAAAC 1 chrV:6043437-6043517 ( 5) CCAAAAAC 1 chrII:11824032-11824112 ( 9) CAAAAAAA 1 chrV:5687357-5687437 ( 15) CAAAAAAA 1 chrIII:8782232-8782312 ( 59) CAAAAAAA 1 chrIII:491259-491339 ( 4) CCAAAAAA 1 chrII:10553884-10553964 ( 21) CAAAAAAA 1 chrI:871954-872034 ( 26) GCAAACGC 1 chrV:8302687-8302767 ( 16) GCAAACGC 1 chrIII:5448334-5448414 ( 62) GCAAACGC 1 chrIII:11774653-11774733 ( 3) GAAAACGA 1 chrV:13131609-13131689 ( 28) GAAAAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMAAAMAM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.65557 E= 1.8e-004 -1226 27 174 -1226 103 96 -1226 -1226 184 -1226 -1226 -1226 184 -1226 -1226 -1226 184 -1226 -1226 -1226 93 109 -1226 -1226 169 -1226 -111 -1226 93 109 -1226 -1226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMAAAMAM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 1.8e-004 0.000000 0.265306 0.734694 0.000000 0.571429 0.428571 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.530612 0.469388 0.000000 0.000000 0.897959 0.000000 0.102041 0.000000 0.530612 0.469388 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMAAAMAM MEME-3 regular expression -------------------------------------------------------------------------------- [GC][AC]AAA[AC]A[AC] -------------------------------------------------------------------------------- Time 12.91 secs. ******************************************************************************** ******************************************************************************** MOTIF HTTTTTTC MEME-4 width = 8 sites = 74 llr = 530 E-value = 6.3e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif HTTTTTTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 42:::::: pos.-specific C 2::::1:7 probability G 1:::::3: matrix T 38aaa973 bits 2.2 2.0 1.7 *** 1.5 *** Relative 1.3 **** * Entropy 1.1 ******* (10.3 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******* 0.0 -------- Multilevel ATTTTTTC consensus TA GT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTTTTTTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:31704-31784 44 2.96e-05 GGGGGAAAAT ATTTTTTC GATTTCGAAA chrX:4490548-4490628 11 2.96e-05 TTCCTCTCCA ATTTTTTC TATTTCTACT chrI:128343-128423 21 2.96e-05 TTTTTCTTTC ATTTTTTC GGCGCCGAAA chrIV:2275742-2275822 54 2.96e-05 GGTTTTCTGG ATTTTTTC CGTTTTCTTC chrIII:4922165-4922245 26 2.96e-05 TTTTAAAATC ATTTTTTC TTGTTAATCC chrV:156541-156621 73 8.26e-05 AAATTGTGTT TTTTTTTC chrII:1344721-1344801 66 8.26e-05 CAATTCATCA TTTTTTTC GGGGGTT chrIV:7477870-7477950 31 8.26e-05 AAACTACGGT CTTTTTTC GCCTGCCCGC chrIV:11822603-11822683 34 8.26e-05 CGCGGGGCTT CTTTTTTC GCGGCGAAAT chrV:14992881-14992961 70 8.26e-05 ACTTTTTGTT TTTTTTTC TCG chrII:4333170-4333250 30 8.26e-05 GAAGAAACAT tttttttc aaaaaatttg chrII:10553884-10553964 11 8.26e-05 CAATATATTT TTTTTTTC ATCAAAAAAA chrIV:2670814-2670894 61 8.26e-05 TTAGCGCGAG CTTTTTTC CGCGGGAATT chrIII:11565755-11565835 65 8.26e-05 AGCGCGCATG CTTTTTTC GTTTTTCT chrIII:12152320-12152400 61 8.26e-05 CAACTTCTGG CTTTTTTC GCCTTTTTTA chrI:4829917-4829997 58 8.26e-05 ACTTGTTTCC CTTTTTTC AGTGGCCGTT chrII:8276246-8276326 32 8.26e-05 TCACGCGCCC TTTTTTTC GCATGTGGAT chrI:8082966-8083046 72 8.26e-05 TTTAAATAAT TTTTTTTC C chrII:2638242-2638322 47 1.06e-04 GCGTTTGCTT ATTTTTGC TTATTTTCAT chrII:11050054-11050134 70 1.06e-04 TATCAATGCG ATTTTTGC ACG chrI:4765581-4765661 50 1.06e-04 TTGAATTTTA ATTTTTGC CCGCCAATTC chrV:5204339-5204419 65 1.06e-04 TGCATTTTCT ATTTTTGC TGGGTTTT chrI:519978-520058 54 1.06e-04 TAGGTCCCGC ATTTTTGC GCGCGCGAAA chrIII:4918110-4918190 52 1.48e-04 CGATTCTCTC TTTTTTGC GCGGGCATTC chrV:10031555-10031635 72 1.48e-04 CAAAAATTAG TTTTTTGC G chrII:10393837-10393917 21 1.48e-04 TTGACAAATA TTTTTTGC GCTTTGCTGG chrV:9382726-9382806 8 1.48e-04 ggcgcgt ttttttgc tggcgcattt chrIII:10093240-10093320 63 1.48e-04 TTGCCACGAG CTTTTTGC GAGGCAATTC chrI:6358582-6358662 59 1.85e-04 TTCTCCAACG ATTTTTTT TTGTAATTTA chrII:580327-580407 62 1.85e-04 TTTTTCGCTG ATTTTTTT AATTTTCAGC chrII:12739464-12739544 15 1.85e-04 TTGGCGCCTA ATTTTTTT GCGCGCGCTC chrIII:12278928-12279008 52 1.85e-04 cccaatgtga attttttt ttggcgcgca chrIII:2619736-2619816 20 2.09e-04 ACAAAAAATT GTTTTTTC AGAAATCTGT chrII:14234544-14234624 67 2.09e-04 ATTTTGAAAG GTTTTTTC ATTAAA chrIII:1207995-1208075 54 2.09e-04 TACAATTTCA GTTTTTTC TGGGCGCGGA chrIII:13278285-13278365 38 3.06e-04 TTCGCAATCT TTTTTTTT GTTGCTCTCT chrII:13596734-13596814 63 3.06e-04 CGAGCGCGAA AATTTTTC GATTAATTTT chrV:14597937-14598017 53 3.06e-04 ATCTACTTGT TTTTTTTT GTTTTCAGCG chrI:10667080-10667160 55 3.06e-04 CTCGGAAAAA CTTTTTTT GGCAGGCACA chrIII:2331387-2331467 73 3.06e-04 CAGTCATTCG CTTTTTTT chrIII:4489094-4489174 31 3.06e-04 CGCCAGCAAC AATTTTTC GCAGCGACCG chrIII:5190816-5190896 60 3.06e-04 CACTTTTCTG TTTTTTTT GTGTTTCCCG chrIV:1177846-1177926 3 3.06e-04 GC AATTTTTC GGTTTGAACT chrI:7559656-7559736 70 3.06e-04 CTTCTTTCGC AATTTTTC TCC chrI:7554763-7554843 57 3.06e-04 TTTCGCGCGA AATTTTTC TTTTGTAAAC chrIV:13353377-13353457 52 3.35e-04 TTGTTTGATC ATTTTTGT CAGCGCTGGC chrIII:10807382-10807462 51 3.35e-04 ACGAATTCAT ATTTTTGT TTCGCGAAGT chrIV:5188209-5188289 70 3.35e-04 GAAGTAATTA ATTTTTGT GGA chrII:4828229-4828309 27 3.35e-04 ACACCCGCGC ATTTTTGT GTCTGCACTG chrI:3931916-3931996 60 4.07e-04 CGAAATTTTG TATTTTTC CGCTCAGCGA chrI:871954-872034 1 4.07e-04 . TATTTTTC TACTATTACC chrII:386113-386193 70 4.07e-04 TGCGTACTTT TATTTTTC TCT chrI:7570747-7570827 51 4.07e-04 TTGCTCTTTT CATTTTTC ACACGCCCGT chrI:13367756-13367836 73 4.07e-04 AAAAATTTTG TATTTTTC chrII:10350641-10350721 68 4.07e-04 CAAATCTTGA TATTTTTC ACTTC chrI:534299-534379 70 4.07e-04 AGAGAAATGG CATTTTTC ACT chrV:5433161-5433241 67 4.30e-04 TTTTCTATTC ATTTTCTC TTTTAT chrII:6536094-6536174 33 4.30e-04 GCGCTCACTT ATTTTCTC AGTGGAGCGC chrIII:2805250-2805330 32 4.30e-04 CCGCGCATTA ATTTTCTC AATGGGGCGC chrIII:6489061-6489141 11 5.07e-04 ATCTTTATTT CTTTTTGT CGTCAAATTG chrII:8661692-8661772 9 5.07e-04 AGTGTTAA AATTTTGC AGATGCAATG chrX:10018436-10018516 65 5.07e-04 cGCGGCCATG CTTTTTGT ACGGTTTC chrIII:491259-491339 68 5.07e-04 gcatttttcc ttttttgt taatt chrII:5377763-5377843 22 5.07e-04 TTTTGACCTA CTTTTTGT CGCAACCGCC chrV:13131609-13131689 12 5.48e-04 AATAGGAAGA CTTTTCTC TCGAAAATGA chrIII:11526564-11526644 52 5.48e-04 ATTTGCGTAC TTTTTCTC CCCCGGTTTT chrV:5687357-5687437 33 6.38e-04 CTCGGCTAAA GTTTTTTT GAGGAAAACG chrX:13729884-13729964 12 7.32e-04 AGTTATATTT CTTTTCGC CGCCCGGTTA chrIV:11856427-11856507 73 7.32e-04 GTCGTCGAGC CTTTTCGC chrI:3866568-3866648 10 7.32e-04 TCTAAAAAT GATTTTTC CCGCCTGTCG chrV:8223-8303 33 8.23e-04 TGTAACCGTA GTTTTTGT CGTTGCGAAG chrIII:9089610-9089690 65 8.23e-04 TCAAATTAGA GTTTTTGT CATTTCAT chrI:7581914-7581994 57 8.52e-04 TGTCAAAAAC ATTTTCTT ATCTAAACTT chrIV:874834-874914 36 9.00e-04 CCGCCGTCGA AATTTTGT CAATGGGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTTTTTTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:31704-31784 3e-05 43_[+4]_29 chrX:4490548-4490628 3e-05 10_[+4]_62 chrI:128343-128423 3e-05 20_[+4]_52 chrIV:2275742-2275822 3e-05 53_[+4]_19 chrIII:4922165-4922245 3e-05 25_[+4]_47 chrV:156541-156621 8.3e-05 72_[+4] chrII:1344721-1344801 8.3e-05 65_[+4]_7 chrIV:7477870-7477950 8.3e-05 30_[+4]_42 chrIV:11822603-11822683 8.3e-05 33_[+4]_39 chrV:14992881-14992961 8.3e-05 69_[+4]_3 chrII:4333170-4333250 8.3e-05 29_[+4]_43 chrII:10553884-10553964 8.3e-05 10_[+4]_62 chrIV:2670814-2670894 8.3e-05 60_[+4]_12 chrIII:11565755-11565835 8.3e-05 64_[+4]_8 chrIII:12152320-12152400 8.3e-05 60_[+4]_12 chrI:4829917-4829997 8.3e-05 57_[+4]_15 chrII:8276246-8276326 8.3e-05 31_[+4]_41 chrI:8082966-8083046 8.3e-05 71_[+4]_1 chrII:2638242-2638322 0.00011 46_[+4]_26 chrII:11050054-11050134 0.00011 69_[+4]_3 chrI:4765581-4765661 0.00011 49_[+4]_23 chrV:5204339-5204419 0.00011 64_[+4]_8 chrI:519978-520058 0.00011 53_[+4]_19 chrIII:4918110-4918190 0.00015 51_[+4]_21 chrV:10031555-10031635 0.00015 71_[+4]_1 chrII:10393837-10393917 0.00015 20_[+4]_52 chrV:9382726-9382806 0.00015 7_[+4]_65 chrIII:10093240-10093320 0.00015 62_[+4]_10 chrI:6358582-6358662 0.00019 58_[+4]_14 chrII:580327-580407 0.00019 61_[+4]_11 chrII:12739464-12739544 0.00019 14_[+4]_58 chrIII:12278928-12279008 0.00019 51_[+4]_21 chrIII:2619736-2619816 0.00021 19_[+4]_53 chrII:14234544-14234624 0.00021 66_[+4]_6 chrIII:1207995-1208075 0.00021 53_[+4]_19 chrIII:13278285-13278365 0.00031 37_[+4]_35 chrII:13596734-13596814 0.00031 62_[+4]_10 chrV:14597937-14598017 0.00031 52_[+4]_20 chrI:10667080-10667160 0.00031 54_[+4]_18 chrIII:2331387-2331467 0.00031 72_[+4] chrIII:4489094-4489174 0.00031 30_[+4]_42 chrIII:5190816-5190896 0.00031 59_[+4]_13 chrIV:1177846-1177926 0.00031 2_[+4]_70 chrI:7559656-7559736 0.00031 69_[+4]_3 chrI:7554763-7554843 0.00031 56_[+4]_16 chrIV:13353377-13353457 0.00034 51_[+4]_21 chrIII:10807382-10807462 0.00034 50_[+4]_22 chrIV:5188209-5188289 0.00034 69_[+4]_3 chrII:4828229-4828309 0.00034 26_[+4]_46 chrI:3931916-3931996 0.00041 59_[+4]_13 chrI:871954-872034 0.00041 [+4]_72 chrII:386113-386193 0.00041 69_[+4]_3 chrI:7570747-7570827 0.00041 50_[+4]_22 chrI:13367756-13367836 0.00041 72_[+4] chrII:10350641-10350721 0.00041 67_[+4]_5 chrI:534299-534379 0.00041 69_[+4]_3 chrV:5433161-5433241 0.00043 66_[+4]_6 chrII:6536094-6536174 0.00043 32_[+4]_40 chrIII:2805250-2805330 0.00043 31_[+4]_41 chrIII:6489061-6489141 0.00051 10_[+4]_62 chrII:8661692-8661772 0.00051 8_[+4]_64 chrX:10018436-10018516 0.00051 64_[+4]_8 chrIII:491259-491339 0.00051 67_[+4]_5 chrII:5377763-5377843 0.00051 21_[+4]_51 chrV:13131609-13131689 0.00055 11_[+4]_61 chrIII:11526564-11526644 0.00055 51_[+4]_21 chrV:5687357-5687437 0.00064 32_[+4]_40 chrX:13729884-13729964 0.00073 11_[+4]_61 chrIV:11856427-11856507 0.00073 72_[+4] chrI:3866568-3866648 0.00073 9_[+4]_63 chrV:8223-8303 0.00082 32_[+4]_40 chrIII:9089610-9089690 0.00082 64_[+4]_8 chrI:7581914-7581994 0.00085 56_[+4]_16 chrIV:874834-874914 0.0009 35_[+4]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTTTTTTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HTTTTTTC width=8 seqs=74 chrII:31704-31784 ( 44) ATTTTTTC 1 chrX:4490548-4490628 ( 11) ATTTTTTC 1 chrI:128343-128423 ( 21) ATTTTTTC 1 chrIV:2275742-2275822 ( 54) ATTTTTTC 1 chrIII:4922165-4922245 ( 26) ATTTTTTC 1 chrV:156541-156621 ( 73) TTTTTTTC 1 chrII:1344721-1344801 ( 66) TTTTTTTC 1 chrIV:7477870-7477950 ( 31) CTTTTTTC 1 chrIV:11822603-11822683 ( 34) CTTTTTTC 1 chrV:14992881-14992961 ( 70) TTTTTTTC 1 chrII:4333170-4333250 ( 30) TTTTTTTC 1 chrII:10553884-10553964 ( 11) TTTTTTTC 1 chrIV:2670814-2670894 ( 61) CTTTTTTC 1 chrIII:11565755-11565835 ( 65) CTTTTTTC 1 chrIII:12152320-12152400 ( 61) CTTTTTTC 1 chrI:4829917-4829997 ( 58) CTTTTTTC 1 chrII:8276246-8276326 ( 32) TTTTTTTC 1 chrI:8082966-8083046 ( 72) TTTTTTTC 1 chrII:2638242-2638322 ( 47) ATTTTTGC 1 chrII:11050054-11050134 ( 70) ATTTTTGC 1 chrI:4765581-4765661 ( 50) ATTTTTGC 1 chrV:5204339-5204419 ( 65) ATTTTTGC 1 chrI:519978-520058 ( 54) ATTTTTGC 1 chrIII:4918110-4918190 ( 52) TTTTTTGC 1 chrV:10031555-10031635 ( 72) TTTTTTGC 1 chrII:10393837-10393917 ( 21) TTTTTTGC 1 chrV:9382726-9382806 ( 8) TTTTTTGC 1 chrIII:10093240-10093320 ( 63) CTTTTTGC 1 chrI:6358582-6358662 ( 59) ATTTTTTT 1 chrII:580327-580407 ( 62) ATTTTTTT 1 chrII:12739464-12739544 ( 15) ATTTTTTT 1 chrIII:12278928-12279008 ( 52) ATTTTTTT 1 chrIII:2619736-2619816 ( 20) GTTTTTTC 1 chrII:14234544-14234624 ( 67) GTTTTTTC 1 chrIII:1207995-1208075 ( 54) GTTTTTTC 1 chrIII:13278285-13278365 ( 38) TTTTTTTT 1 chrII:13596734-13596814 ( 63) AATTTTTC 1 chrV:14597937-14598017 ( 53) TTTTTTTT 1 chrI:10667080-10667160 ( 55) CTTTTTTT 1 chrIII:2331387-2331467 ( 73) CTTTTTTT 1 chrIII:4489094-4489174 ( 31) AATTTTTC 1 chrIII:5190816-5190896 ( 60) TTTTTTTT 1 chrIV:1177846-1177926 ( 3) AATTTTTC 1 chrI:7559656-7559736 ( 70) AATTTTTC 1 chrI:7554763-7554843 ( 57) AATTTTTC 1 chrIV:13353377-13353457 ( 52) ATTTTTGT 1 chrIII:10807382-10807462 ( 51) ATTTTTGT 1 chrIV:5188209-5188289 ( 70) ATTTTTGT 1 chrII:4828229-4828309 ( 27) ATTTTTGT 1 chrI:3931916-3931996 ( 60) TATTTTTC 1 chrI:871954-872034 ( 1) TATTTTTC 1 chrII:386113-386193 ( 70) TATTTTTC 1 chrI:7570747-7570827 ( 51) CATTTTTC 1 chrI:13367756-13367836 ( 73) TATTTTTC 1 chrII:10350641-10350721 ( 68) TATTTTTC 1 chrI:534299-534379 ( 70) CATTTTTC 1 chrV:5433161-5433241 ( 67) ATTTTCTC 1 chrII:6536094-6536174 ( 33) ATTTTCTC 1 chrIII:2805250-2805330 ( 32) ATTTTCTC 1 chrIII:6489061-6489141 ( 11) CTTTTTGT 1 chrII:8661692-8661772 ( 9) AATTTTGC 1 chrX:10018436-10018516 ( 65) CTTTTTGT 1 chrIII:491259-491339 ( 68) TTTTTTGT 1 chrII:5377763-5377843 ( 22) CTTTTTGT 1 chrV:13131609-13131689 ( 12) CTTTTCTC 1 chrIII:11526564-11526644 ( 52) TTTTTCTC 1 chrV:5687357-5687437 ( 33) GTTTTTTT 1 chrX:13729884-13729964 ( 12) CTTTTCGC 1 chrIV:11856427-11856507 ( 73) CTTTTCGC 1 chrI:3866568-3866648 ( 10) GATTTTTC 1 chrV:8223-8303 ( 33) GTTTTTGT 1 chrIII:9089610-9089690 ( 65) GTTTTTGT 1 chrI:7581914-7581994 ( 57) ATTTTCTT 1 chrIV:874834-874914 ( 36) AATTTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTTTTTTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.36683 E= 6.3e-008 49 6 -122 2 -46 -1285 -1285 151 -1285 -1285 -1285 183 -1285 -1285 -1285 183 -1285 -1285 -1285 183 -1285 -103 -1285 167 -1285 -1285 56 127 -1285 167 -1285 8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTTTTTTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 74 E= 6.3e-008 0.391892 0.229730 0.094595 0.283784 0.202703 0.000000 0.000000 0.797297 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.108108 0.000000 0.891892 0.000000 0.000000 0.324324 0.675676 0.000000 0.702703 0.000000 0.297297 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTTTTTTC MEME-4 regular expression -------------------------------------------------------------------------------- [ATC][TA]TTTT[TG][CT] -------------------------------------------------------------------------------- Time 16.22 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGCGTAC MEME-5 width = 8 sites = 13 llr = 138 E-value = 1.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGCGTAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C :::a:::a probability G ::a:a3:: matrix T aa:::7:: bits 2.2 *** * 2.0 *** * 1.7 ***** ** 1.5 ***** ** Relative 1.3 ***** ** Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGCGTAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGTAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:1893039-1893119 61 1.45e-05 CCGAGGATGA TTGCGTAC AAGTACGCAA chrIII:5153296-5153376 63 1.45e-05 CGACGCACTT TTGCGTAC TCTAAAATTT chrI:13840069-13840149 24 1.45e-05 GATTTGGTGT TTGCGTAC AAAGCGCCAC chrII:2059160-2059240 34 1.45e-05 CACGCGGTGG TTGCGTAC AAAGCGCCCG chrII:386113-386193 59 1.45e-05 GGTGTTGCGC TTGCGTAC TTTTATTTTT chrI:3876917-3876997 5 1.45e-05 ACAA TTGCGTAC TCTTTCGGTC chrIII:11526564-11526644 44 1.45e-05 TTCGCTGTAT TTGCGTAC TTTTTCTCCC chrIV:2275742-2275822 4 1.45e-05 TGT TTGCGTAC TACACATTTC chrI:534299-534379 36 1.45e-05 GTCGTGGTGT TTGCGTAC CTCGGCGGGA chrIII:13307265-13307345 58 2.59e-05 TCACGCACAA TTGCGGAC CCAGTGAAAA chrI:10667080-10667160 38 2.59e-05 TGACGCGCAT TTGCGGAC TCGGAAAAAC chrI:14405729-14405809 64 2.59e-05 TCACGCGCAA TTGCGGAC TCGCCCCCT chrII:13083891-13083971 73 2.59e-05 CTACGACACT TTGCGGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGTAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:1893039-1893119 1.4e-05 60_[+5]_12 chrIII:5153296-5153376 1.4e-05 62_[+5]_10 chrI:13840069-13840149 1.4e-05 23_[+5]_49 chrII:2059160-2059240 1.4e-05 33_[+5]_39 chrII:386113-386193 1.4e-05 58_[+5]_14 chrI:3876917-3876997 1.4e-05 4_[+5]_68 chrIII:11526564-11526644 1.4e-05 43_[+5]_29 chrIV:2275742-2275822 1.4e-05 3_[+5]_69 chrI:534299-534379 1.4e-05 35_[+5]_37 chrIII:13307265-13307345 2.6e-05 57_[+5]_15 chrI:10667080-10667160 2.6e-05 37_[+5]_35 chrI:14405729-14405809 2.6e-05 63_[+5]_9 chrII:13083891-13083971 2.6e-05 72_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGTAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGCGTAC width=8 seqs=13 chrV:1893039-1893119 ( 61) TTGCGTAC 1 chrIII:5153296-5153376 ( 63) TTGCGTAC 1 chrI:13840069-13840149 ( 24) TTGCGTAC 1 chrII:2059160-2059240 ( 34) TTGCGTAC 1 chrII:386113-386193 ( 59) TTGCGTAC 1 chrI:3876917-3876997 ( 5) TTGCGTAC 1 chrIII:11526564-11526644 ( 44) TTGCGTAC 1 chrIV:2275742-2275822 ( 4) TTGCGTAC 1 chrI:534299-534379 ( 36) TTGCGTAC 1 chrIII:13307265-13307345 ( 58) TTGCGGAC 1 chrI:10667080-10667160 ( 38) TTGCGGAC 1 chrI:14405729-14405809 ( 64) TTGCGGAC 1 chrII:13083891-13083971 ( 73) TTGCGGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGTAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.985 E= 1.5e-001 -1035 -1035 -1035 183 -1035 -1035 -1035 183 -1035 -1035 218 -1035 -1035 218 -1035 -1035 -1035 -1035 218 -1035 -1035 -1035 48 130 184 -1035 -1035 -1035 -1035 218 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGTAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.5e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.307692 0.692308 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGTAC MEME-5 regular expression -------------------------------------------------------------------------------- TTGCG[TG]AC -------------------------------------------------------------------------------- Time 19.32 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4035131-4035211 7.42e-02 80 chrI:7554763-7554843 1.33e-03 48_[+1(2.88e-05)]_24 chrIV:3212096-3212176 2.89e-02 24_[+1(2.88e-05)]_[+1(2.88e-05)]_40 chrI:8082966-8083046 3.55e-03 71_[+4(8.26e-05)]_1 chrIII:10093240-10093320 3.07e-01 80 chrX:9705722-9705802 1.73e-01 80 chrV:1049529-1049609 1.07e-01 80 chrI:5871960-5872040 5.19e-03 49_[+3(3.23e-05)]_23 chrIII:1207995-1208075 2.73e-03 80 chrI:3684596-3684676 7.18e-03 80 chrII:2289598-2289678 4.09e-02 1_[+2(8.85e-05)]_71 chrI:7559656-7559736 1.28e-01 80 chrII:11968402-11968482 3.60e-01 80 chrI:534299-534379 7.92e-04 35_[+5(1.45e-05)]_37 chrI:6109753-6109833 4.19e-04 20_[+4(8.26e-05)]_52 chrIV:9403912-9403992 1.26e-01 80 chrI:9274737-9274817 4.51e-01 80 chrIV:1177846-1177926 7.43e-03 80 chrII:10350641-10350721 1.56e-01 80 chrIII:8628557-8628637 1.06e-01 80 chrV:6593862-6593942 4.77e-02 45_[+2(8.85e-05)]_27 chrIII:9089610-9089690 3.17e-03 80 chrI:1895077-1895157 3.09e-03 80 chrIII:5190816-5190896 2.13e-01 80 chrV:9382726-9382806 1.71e-04 32_[+1(6.65e-05)]_40 chrV:18086934-18087014 1.20e-03 17_[+1(7.08e-06)]_55 chrX:2258548-2258628 4.82e-01 80 chrI:519978-520058 6.91e-05 21_[+1(7.08e-06)]_30_[+1(2.88e-05)]_\ 13 chrI:6038163-6038243 4.63e-02 80 chrI:3866568-3866648 1.15e-02 80 chrII:8276246-8276326 1.44e-04 31_[+4(8.26e-05)]_41 chrIII:12278928-12279008 8.46e-06 60_[+1(2.88e-05)]_[+2(8.85e-05)]_4 chrI:10565995-10566075 9.85e-02 80 chrV:12271638-12271718 1.28e-02 80 chrI:13367756-13367836 3.62e-03 80 chrV:8223-8303 5.17e-03 80 chrI:7570747-7570827 1.50e-02 80 chrM:13604-13684 9.86e-01 80 chrIII:7068796-7068876 2.72e-01 80 chrIII:7074143-7074223 9.60e-03 38_[+1(8.81e-05)]_34 chrII:10393837-10393917 5.25e-04 35_[+1(2.88e-05)]_37 chrV:15578507-15578587 1.53e-01 80 chrV:13312445-13312525 6.90e-02 80 chrI:10185722-10185802 1.32e-02 13_[+2(2.95e-05)]_6_[+2(8.85e-05)]_\ 45 chrV:15059698-15059778 2.01e-04 39_[+1(7.08e-06)]_33 chrV:5596522-5596602 2.59e-01 80 chrV:8773946-8774026 2.30e-01 80 chrII:13083891-13083971 1.51e-04 15_[+2(8.85e-05)]_49_[+5(2.59e-05)] chrI:4185245-4185325 1.22e-01 80 chrII:8457581-8457661 9.86e-02 80 chrI:4829917-4829997 5.52e-02 57_[+4(8.26e-05)]_15 chrIII:12152320-12152400 9.71e-03 60_[+4(8.26e-05)]_12 chrI:10560201-10560281 1.34e-01 80 chrIII:4922165-4922245 1.29e-03 25_[+4(2.96e-05)]_47 chrI:3741255-3741335 7.06e-04 63_[+1(6.65e-05)]_1_[+2(2.95e-05)] chrV:3578975-3579055 3.48e-03 32_[+1(6.65e-05)]_40 chrII:11782689-11782769 8.66e-04 46_[+1(8.81e-05)]_26 chrIV:2275742-2275822 3.24e-04 3_[+5(1.45e-05)]_42_[+4(2.96e-05)]_\ 19 chrIV:8511208-8511288 1.42e-02 71_[+1(6.65e-05)]_1 chrX:15241363-15241443 8.00e-01 80 chrM:13144-13224 4.13e-01 80 chrIII:5448334-5448414 4.09e-04 42_[+1(6.65e-05)]_30 chrI:9581586-9581666 7.25e-02 80 chrIII:4489094-4489174 7.84e-03 80 chrIV:11142609-11142689 1.74e-03 54_[+1(8.81e-05)]_18 chrIII:9570985-9571065 2.12e-01 80 chrII:5377763-5377843 1.06e-01 80 chrI:3930529-3930609 1.05e-01 80 chrIII:4291438-4291518 5.27e-05 3_[+2(8.85e-05)]_27_[+3(3.23e-05)]_\ 34 chrV:9930787-9930867 4.63e-01 80 chrII:8283382-8283462 6.59e-01 80 chrII:14234544-14234624 2.46e-03 57_[+2(2.95e-05)]_15 chrI:3600842-3600922 1.32e-02 80 chrV:6043437-6043517 2.20e-03 80 chrIII:11526564-11526644 1.75e-02 43_[+5(1.45e-05)]_29 chrIII:9393428-9393508 4.04e-03 10_[+1(7.08e-06)]_62 chrIII:2331387-2331467 2.81e-03 80 chrIV:17273883-17273963 6.68e-03 80 chrIII:7952245-7952325 1.97e-01 80 chrII:12284183-12284263 6.40e-04 15_[+2(8.85e-05)]_57 chrIII:4878417-4878497 3.85e-03 27_[+1(7.08e-06)]_45 chrV:5939675-5939755 6.31e-02 80 chrII:4828229-4828309 7.61e-06 47_[+5(2.59e-05)]_25 chrII:2204236-2204316 5.79e-02 80 chrIV:5188209-5188289 8.37e-05 7_[+1(7.08e-06)]_65 chrIII:11565755-11565835 6.07e-04 64_[+4(8.26e-05)]_8 chrIII:11580646-11580726 6.23e-01 80 chrI:12183215-12183295 5.14e-02 44_[+1(6.65e-05)]_28 chrV:8302687-8302767 9.86e-02 80 chrIV:13231549-13231629 5.21e-02 27_[+5(2.59e-05)]_45 chrIII:2619736-2619816 6.44e-03 80 chrIV:17461490-17461570 4.41e-04 13_[+1(7.08e-06)]_59 chrII:12184953-12185033 6.85e-02 80 chrI:10173226-10173306 3.90e-01 80 chrIV:2670814-2670894 1.99e-02 60_[+4(8.26e-05)]_12 chrIV:1309987-1310067 3.63e-03 41_[+1(6.65e-05)]_31 chrI:12966433-12966513 4.69e-02 80 chrII:10553884-10553964 1.54e-02 10_[+4(8.26e-05)]_62 chrI:5357535-5357615 2.03e-01 80 chrI:3876917-3876997 6.65e-05 4_[+5(1.45e-05)]_68 chrIII:2805250-2805330 1.09e-03 10_[+2(8.85e-05)]_62 chrI:3223024-3223104 1.72e-01 80 chrII:8162393-8162473 1.79e-01 80 chrV:10031555-10031635 4.17e-02 80 chrIII:9617098-9617178 1.02e-01 3_[+1(8.81e-05)]_69 chrV:5204339-5204419 3.96e-04 80 chrI:128343-128423 4.15e-03 20_[+4(2.96e-05)]_52 chrIII:13455929-13456009 4.97e-01 80 chrIII:10114817-10114897 2.47e-01 80 chrII:386113-386193 1.61e-04 58_[+5(1.45e-05)]_14 chrII:6536094-6536174 3.81e-03 80 chrIII:10248596-10248676 1.06e-02 7_[+1(7.08e-06)]_65 chrI:8839249-8839329 8.95e-03 29_[+1(2.88e-05)]_43 chrI:13628619-13628699 1.18e-02 80 chrV:13131609-13131689 9.99e-04 50_[+1(2.88e-05)]_22 chrIV:11856427-11856507 8.04e-02 80 chrIII:8101101-8101181 1.75e-01 80 chrIII:491259-491339 5.98e-03 80 chrIII:4918110-4918190 2.07e-04 22_[+1(3.58e-05)]_50 chrIII:6869461-6869541 2.03e-01 80 chrI:14405729-14405809 2.95e-02 63_[+5(2.59e-05)]_9 chrII:11578013-11578093 2.84e-01 80 chrII:13725924-13726004 4.52e-06 54_[+4(2.96e-05)]_4_[+1(7.08e-06)]_\ 6 chrIV:9932208-9932288 3.93e-03 67_[+4(2.96e-05)]_5 chrII:5501452-5501532 2.91e-02 80 chrI:2306846-2306926 5.33e-03 80 chrI:4765581-4765661 5.93e-03 80 chrIV:9777713-9777793 2.33e-02 80 chrIV:9386185-9386265 1.60e-01 80 chrI:3785954-3786034 2.57e-01 80 chrIV:7149364-7149444 3.55e-01 80 chrI:3368666-3368746 1.89e-06 26_[+1(7.08e-06)]_2_[+2(8.85e-05)]_\ 6_[+3(3.23e-05)]_22 chrI:3481533-3481613 2.40e-01 80 chrI:10667080-10667160 5.58e-05 13_[+3(3.23e-05)]_16_[+5(2.59e-05)]_\ 35 chrI:2433704-2433784 4.09e-02 80 chrIV:7632684-7632764 1.25e-02 80 chrX:13729884-13729964 2.55e-01 80 chrII:9706366-9706446 2.09e-01 80 chrIII:10642950-10643030 1.57e-02 47_[+3(3.23e-05)]_25 chrIV:7796854-7796934 9.14e-03 80 chrI:3438944-3439024 1.42e-03 80 chrV:6838766-6838846 2.91e-03 80 chrV:7854119-7854199 3.09e-01 80 chrII:6974165-6974245 3.49e-01 80 chrIII:10807382-10807462 1.44e-02 32_[+1(6.65e-05)]_40 chrIV:13353377-13353457 1.34e-01 80 chrI:871954-872034 9.98e-04 80 chrX:11792094-11792174 1.09e-01 80 chrV:14597937-14598017 5.15e-02 80 chrIII:902050-902130 9.86e-03 80 chrIII:10905333-10905413 2.54e-01 80 chrIII:8782232-8782312 1.04e-01 80 chrII:6197039-6197119 3.02e-02 20_[+3(3.23e-05)]_52 chrII:2059160-2059240 1.52e-03 33_[+5(1.45e-05)]_39 chrI:7581914-7581994 2.14e-02 80 chrII:2288979-2289059 2.00e-01 80 chrII:4333170-4333250 1.11e-03 29_[+4(8.26e-05)]_43 chrV:1472184-1472264 2.78e-01 80 chrV:14992881-14992961 4.83e-03 69_[+4(8.26e-05)]_3 chrIII:13307265-13307345 3.97e-04 57_[+5(2.59e-05)]_15 chrI:3931916-3931996 1.71e-02 80 chrX:10018436-10018516 8.88e-03 80 chrV:4063695-4063775 9.79e-02 80 chrX:2971071-2971151 5.53e-01 80 chrIII:3705110-3705190 2.05e-03 80 chrI:6565999-6566079 3.27e-01 80 chrIV:874834-874914 5.43e-03 80 chrIII:7584424-7584504 1.70e-01 80 chrV:5687357-5687437 1.02e-02 80 chrI:12920721-12920801 9.23e-02 80 chrV:11079038-11079118 1.89e-02 80 chrX:16617858-16617938 3.10e-01 80 chrIV:10368011-10368091 3.09e-01 80 chrIII:6442665-6442745 1.12e-02 80 chrIII:7104176-7104256 4.81e-03 80 chrV:15395491-15395571 1.83e-01 80 chrX:8955887-8955967 4.26e-04 3_[+4(8.26e-05)]_69 chrIII:6615209-6615289 3.80e-02 80 chrIV:15028997-15029077 3.58e-02 80 chrI:10478249-10478329 1.58e-02 80 chrIV:2773516-2773596 4.28e-01 80 chrIII:472123-472203 1.27e-01 80 chrIII:1533241-1533321 4.60e-02 80 chrIV:11822603-11822683 1.89e-02 33_[+4(8.26e-05)]_39 chrI:13812432-13812512 2.29e-02 80 chrIV:11337178-11337258 7.02e-04 30_[+1(7.08e-06)]_42 chrIII:2031343-2031423 8.64e-01 80 chrII:12739464-12739544 1.82e-03 22_[+1(2.88e-05)]_50 chrIV:3213585-3213665 1.16e-02 80 chrII:10714378-10714458 2.81e-02 80 chrII:11824032-11824112 2.47e-01 80 chrI:8487402-8487482 1.20e-01 80 chrIII:6379216-6379296 2.92e-01 80 chrI:10687175-10687255 7.35e-02 80 chrII:2804383-2804463 1.49e-01 80 chrIV:13512317-13512397 1.05e-02 80 chrV:14734503-14734583 4.94e-03 80 chrV:8031328-8031408 3.07e-02 80 chrII:13596734-13596814 2.49e-04 38_[+3(3.23e-05)]_34 chrI:3982887-3982967 3.82e-01 80 chrX:1845595-1845675 1.66e-01 80 chrIV:6415327-6415407 8.01e-01 80 chrIII:11774653-11774733 1.97e-02 44_[+3(3.23e-05)]_28 chrII:8661692-8661772 8.35e-02 80 chrV:5433161-5433241 8.42e-04 80 chrII:12738948-12739028 5.47e-02 33_[+3(3.23e-05)]_39 chrIII:13278285-13278365 2.00e-01 80 chrI:10570093-10570173 9.38e-01 80 chrII:7025620-7025700 1.20e-01 80 chrI:8027954-8028034 4.15e-02 80 chrV:11503480-11503560 3.51e-01 80 chrI:13840069-13840149 7.40e-03 23_[+5(1.45e-05)]_49 chrIII:10329924-10330004 8.24e-02 80 chrIII:7712043-7712123 1.63e-02 2_[+2(8.85e-05)]_70 chrIII:1905759-1905839 2.06e-02 41_[+1(2.88e-05)]_31 chrIV:7477870-7477950 6.69e-03 30_[+4(8.26e-05)]_42 chrII:7880560-7880640 4.19e-02 80 chrX:7340552-7340632 1.97e-01 80 chrIII:6489061-6489141 2.30e-03 49_[+3(3.23e-05)]_23 chrIII:7724599-7724679 3.26e-02 80 chrII:13722926-13723006 2.52e-03 45_[+1(7.08e-06)]_27 chrI:10788778-10788858 3.79e-02 80 chrI:12520524-12520604 7.58e-02 80 chrX:4409692-4409772 2.44e-01 80 chrIV:5731761-5731841 1.24e-01 80 chrI:12732972-12733052 5.25e-03 80 chrII:1344721-1344801 5.41e-02 65_[+4(8.26e-05)]_7 chrII:11050054-11050134 1.41e-02 80 chrII:9242972-9243052 6.27e-03 80 chrV:4890132-4890212 4.96e-03 38_[+1(8.81e-05)]_34 chrIV:4510993-4511073 3.53e-01 80 chrX:4490548-4490628 6.31e-03 10_[+4(2.96e-05)]_62 chrII:6321170-6321250 1.06e-02 80 chrII:580327-580407 1.93e-02 80 chrV:156541-156621 6.18e-04 28_[+1(6.65e-05)]_36_[+4(8.26e-05)] chrII:31704-31784 1.17e-03 43_[+4(2.96e-05)]_29 chrIII:7357538-7357618 4.86e-02 7_[+3(3.23e-05)]_65 chrIV:14070346-14070426 6.19e-02 80 chrI:5274290-5274370 2.15e-03 9_[+4(2.96e-05)]_63 chrIII:8630998-8631078 4.62e-02 80 chrIII:5153296-5153376 5.28e-04 24_[+3(3.23e-05)]_30_[+5(1.45e-05)]_\ 10 chrIII:8268493-8268573 1.22e-01 80 chrI:6358582-6358662 8.99e-03 80 chrII:2638242-2638322 3.06e-02 80 chrI:10633198-10633278 2.11e-02 43_[+3(3.23e-05)]_29 chrII:11578532-11578612 5.49e-04 52_[+2(2.95e-05)]_20 chrV:1893039-1893119 6.89e-05 60_[+5(1.45e-05)]_12 chrX:16503159-16503239 2.76e-01 80 chrII:3680522-3680602 2.85e-01 80 chrII:13036875-13036955 2.55e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n04.farnam.hpc.yale.internal ********************************************************************************