******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/dpff-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:9738761-9738841 1.0000 80 chrI:6498597-6498677 1.0000 80 chrII:7075950-7076030 1.0000 80 chrIII:5946937-5947017 1.0000 80 chrX:6536079-6536159 1.0000 80 chrI:6320558-6320638 1.0000 80 chrV:11119495-11119575 1.0000 80 chrIII:11252044-11252124 1.0000 80 chrV:8030636-8030716 1.0000 80 chrI:9420703-9420783 1.0000 80 chrII:10934084-10934164 1.0000 80 chrIV:2497922-2498002 1.0000 80 chrI:11745663-11745743 1.0000 80 chrIII:6171039-6171119 1.0000 80 chrIV:7240716-7240796 1.0000 80 chrIV:4317324-4317404 1.0000 80 chrII:11618912-11618992 1.0000 80 chrIV:9095429-9095509 1.0000 80 chrIV:8741217-8741297 1.0000 80 chrIII:12607433-12607513 1.0000 80 chrIV:2765066-2765146 1.0000 80 chrIV:3032171-3032251 1.0000 80 chrIII:11702043-11702123 1.0000 80 chrII:9617480-9617560 1.0000 80 chrI:7019454-7019534 1.0000 80 chrIII:11917753-11917833 1.0000 80 chrIII:6148855-6148935 1.0000 80 chrI:4137154-4137234 1.0000 80 chrIII:7738034-7738114 1.0000 80 chrI:3909832-3909912 1.0000 80 chrIII:5557574-5557654 1.0000 80 chrV:10238076-10238156 1.0000 80 chrIII:3653250-3653330 1.0000 80 chrII:4912114-4912194 1.0000 80 chrII:10951467-10951547 1.0000 80 chrIV:8261499-8261579 1.0000 80 chrIII:11694675-11694755 1.0000 80 chrIV:427109-427189 1.0000 80 chrV:14352007-14352087 1.0000 80 chrI:5620908-5620988 1.0000 80 chrI:6188452-6188532 1.0000 80 chrIV:11146082-11146162 1.0000 80 chrX:1487176-1487256 1.0000 80 chrV:1263513-1263593 1.0000 80 chrX:16564666-16564746 1.0000 80 chrV:5285114-5285194 1.0000 80 chrI:3834168-3834248 1.0000 80 chrIV:15049574-15049654 1.0000 80 chrIV:7397473-7397553 1.0000 80 chrIV:4084747-4084827 1.0000 80 chrIII:13299283-13299363 1.0000 80 chrIII:13370690-13370770 1.0000 80 chrV:6606168-6606248 1.0000 80 chrI:7057967-7058047 1.0000 80 chrIV:15900397-15900477 1.0000 80 chrII:11966719-11966799 1.0000 80 chrIV:6588447-6588527 1.0000 80 chrIV:16657636-16657716 1.0000 80 chrIV:8538525-8538605 1.0000 80 chrIV:7253222-7253302 1.0000 80 chrI:12919572-12919652 1.0000 80 chrIV:15011320-15011400 1.0000 80 chrIV:13251040-13251120 1.0000 80 chrI:9757843-9757923 1.0000 80 chrX:4148591-4148671 1.0000 80 chrV:12320585-12320665 1.0000 80 chrIII:7141614-7141694 1.0000 80 chrX:15362321-15362401 1.0000 80 chrIII:6195922-6196002 1.0000 80 chrIII:65336-65416 1.0000 80 chrX:4148346-4148426 1.0000 80 chrIII:7494923-7495003 1.0000 80 chrI:12045402-12045482 1.0000 80 chrI:11571893-11571973 1.0000 80 chrIV:7962130-7962210 1.0000 80 chrV:11076320-11076400 1.0000 80 chrV:6278650-6278730 1.0000 80 chrIII:10506134-10506214 1.0000 80 chrV:10235848-10235928 1.0000 80 chrI:6094466-6094546 1.0000 80 chrII:11974485-11974565 1.0000 80 chrV:20784063-20784143 1.0000 80 chrV:13796710-13796790 1.0000 80 chrII:9934064-9934144 1.0000 80 chrIV:5541450-5541530 1.0000 80 chrIII:3740025-3740105 1.0000 80 chrII:8939142-8939222 1.0000 80 chrIII:8685991-8686071 1.0000 80 chrIV:9339011-9339091 1.0000 80 chrV:1476794-1476874 1.0000 80 chrIV:396598-396678 1.0000 80 chrII:8358745-8358825 1.0000 80 chrIV:11147150-11147230 1.0000 80 chrIII:11091287-11091367 1.0000 80 chrV:13567143-13567223 1.0000 80 chrI:538704-538784 1.0000 80 chrV:13649986-13650066 1.0000 80 chrII:10547379-10547459 1.0000 80 chrV:727634-727714 1.0000 80 chrIII:11830575-11830655 1.0000 80 chrV:20837850-20837930 1.0000 80 chrIII:4937451-4937531 1.0000 80 chrII:7866330-7866410 1.0000 80 chrV:10477535-10477615 1.0000 80 chrIII:1616733-1616813 1.0000 80 chrI:10179097-10179177 1.0000 80 chrIV:2768452-2768532 1.0000 80 chrIII:4491515-4491595 1.0000 80 chrIII:6958991-6959071 1.0000 80 chrV:6276734-6276814 1.0000 80 chrIII:5879650-5879730 1.0000 80 chrX:6522688-6522768 1.0000 80 chrIII:5230651-5230731 1.0000 80 chrIV:2765278-2765358 1.0000 80 chrIII:5273508-5273588 1.0000 80 chrIV:9774249-9774329 1.0000 80 chrI:10516803-10516883 1.0000 80 chrII:8929934-8930014 1.0000 80 chrIV:991521-991601 1.0000 80 chrV:18496692-18496772 1.0000 80 chrIII:7329304-7329384 1.0000 80 chrIII:5277985-5278065 1.0000 80 chrV:14028317-14028397 1.0000 80 chrI:6093449-6093529 1.0000 80 chrV:20164447-20164527 1.0000 80 chrI:12654772-12654852 1.0000 80 chrII:14155863-14155943 1.0000 80 chrII:4042812-4042892 1.0000 80 chrIV:1711265-1711345 1.0000 80 chrV:8518582-8518662 1.0000 80 chrIV:8377617-8377697 1.0000 80 chrIII:6931992-6932072 1.0000 80 chrI:11177379-11177459 1.0000 80 chrI:7656769-7656849 1.0000 80 chrV:4823911-4823991 1.0000 80 chrIII:12499380-12499460 1.0000 80 chrIII:7338742-7338822 1.0000 80 chrIII:7180954-7181034 1.0000 80 chrX:13730376-13730456 1.0000 80 chrIII:1625908-1625988 1.0000 80 chrIII:9441318-9441398 1.0000 80 chrII:8441611-8441691 1.0000 80 chrII:5353815-5353895 1.0000 80 chrIV:10934029-10934109 1.0000 80 chrIII:344053-344133 1.0000 80 chrIV:13398834-13398914 1.0000 80 chrV:6326655-6326735 1.0000 80 chrIII:8443730-8443810 1.0000 80 chrV:4694730-4694810 1.0000 80 chrII:11153025-11153105 1.0000 80 chrIII:4195511-4195591 1.0000 80 chrI:5866092-5866172 1.0000 80 chrIII:7142521-7142601 1.0000 80 chrII:14351173-14351253 1.0000 80 chrIII:11921824-11921904 1.0000 80 chrIII:3069406-3069486 1.0000 80 chrV:9327200-9327280 1.0000 80 chrIII:9805130-9805210 1.0000 80 chrIV:7962334-7962414 1.0000 80 chrIII:9462926-9463006 1.0000 80 chrV:16593006-16593086 1.0000 80 chrII:12736801-12736881 1.0000 80 chrV:11122571-11122651 1.0000 80 chrI:3152817-3152897 1.0000 80 chrII:11880689-11880769 1.0000 80 chrI:5372383-5372463 1.0000 80 chrIII:12250673-12250753 1.0000 80 chrI:6847129-6847209 1.0000 80 chrIV:13388870-13388950 1.0000 80 chrIII:13464604-13464684 1.0000 80 chrIII:5653630-5653710 1.0000 80 chrI:7872396-7872476 1.0000 80 chrI:6219701-6219781 1.0000 80 chrI:7079404-7079484 1.0000 80 chrI:2878595-2878675 1.0000 80 chrV:10887701-10887781 1.0000 80 chrII:11149945-11150025 1.0000 80 chrV:20785624-20785704 1.0000 80 chrI:8612426-8612506 1.0000 80 chrV:16225438-16225518 1.0000 80 chrII:11376691-11376771 1.0000 80 chrII:11167079-11167159 1.0000 80 chrI:10085855-10085935 1.0000 80 chrIII:12599071-12599151 1.0000 80 chrII:8933851-8933931 1.0000 80 chrV:20497753-20497833 1.0000 80 chrV:6221469-6221549 1.0000 80 chrII:11224381-11224461 1.0000 80 chrX:17628483-17628563 1.0000 80 chrV:11980432-11980512 1.0000 80 chrI:14058681-14058761 1.0000 80 chrV:1875689-1875769 1.0000 80 chrX:16930935-16931015 1.0000 80 chrI:8135281-8135361 1.0000 80 chrIII:5506421-5506501 1.0000 80 chrIII:1420006-1420086 1.0000 80 chrIII:835947-836027 1.0000 80 chrI:6499564-6499644 1.0000 80 chrIV:4468219-4468299 1.0000 80 chrX:12889941-12890021 1.0000 80 chrIII:12906849-12906929 1.0000 80 chrV:5667483-5667563 1.0000 80 chrII:14018361-14018441 1.0000 80 chrI:14718966-14719046 1.0000 80 chrV:9734247-9734327 1.0000 80 chrIII:9051300-9051380 1.0000 80 chrIII:8449624-8449704 1.0000 80 chrIV:3336757-3336837 1.0000 80 chrV:20847999-20848079 1.0000 80 chrIV:2390548-2390628 1.0000 80 chrIV:7083366-7083446 1.0000 80 chrIV:11956624-11956704 1.0000 80 chrIV:2664924-2665004 1.0000 80 chrI:8868524-8868604 1.0000 80 chrII:15004545-15004625 1.0000 80 chrIII:13464804-13464884 1.0000 80 chrI:5104754-5104834 1.0000 80 chrX:1503672-1503752 1.0000 80 chrII:6587487-6587567 1.0000 80 chrIII:9054070-9054150 1.0000 80 chrIII:4172304-4172384 1.0000 80 chrV:5592142-5592222 1.0000 80 chrIII:6606236-6606316 1.0000 80 chrIII:9782101-9782181 1.0000 80 chrII:11759432-11759512 1.0000 80 chrIV:11026154-11026234 1.0000 80 chrV:12510134-12510214 1.0000 80 chrII:2974063-2974143 1.0000 80 chrX:4969256-4969336 1.0000 80 chrI:2514301-2514381 1.0000 80 chrIII:12250890-12250970 1.0000 80 chrIII:8449385-8449465 1.0000 80 chrIV:17281428-17281508 1.0000 80 chrV:14463159-14463239 1.0000 80 chrI:6838285-6838365 1.0000 80 chrI:1701449-1701529 1.0000 80 chrIV:9477707-9477787 1.0000 80 chrV:14354459-14354539 1.0000 80 chrIII:10214481-10214561 1.0000 80 chrIV:8431713-8431793 1.0000 80 chrIII:3249150-3249230 1.0000 80 chrIII:4471082-4471162 1.0000 80 chrI:9167132-9167212 1.0000 80 chrIV:7984091-7984171 1.0000 80 chrIII:4414249-4414329 1.0000 80 chrI:11374397-11374477 1.0000 80 chrX:16056587-16056667 1.0000 80 chrII:8107184-8107264 1.0000 80 chrII:6968342-6968422 1.0000 80 chrIII:5211286-5211366 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_dpff-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/dpff-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.302 C 0.202 G 0.21 T 0.285 Background letter frequencies (from file dataset with add-one prior applied): A 0.302 C 0.202 G 0.21 T 0.285 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SAGCCCCG MEME-1 width = 8 sites = 6 llr = 70 E-value = 3.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAGCCCCG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C 7::aaaa: probability G 3:a::::a matrix T :::::::: bits 2.3 ****** 2.1 ****** 1.8 ****** 1.6 ******* Relative 1.4 ******** Entropy 1.2 ******** (16.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCCCCG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGCCCCG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:6968342-6968422 70 4.48e-06 CGCGCGCACG CAGCCCCG ATA chrV:14463159-14463239 47 4.48e-06 CGCGCGCACG CAGCCCCG ATACGCAAAA chrX:16930935-16931015 20 4.48e-06 ATTGCGAAAT CAGCCCCG TAGTGCACTG chrI:6847129-6847209 27 4.48e-06 CGCGCGCACG CAGCCCCG ATACGCAAAA chrIV:13398834-13398914 35 9.14e-06 CTGTTATTTG GAGCCCCG CACGTGGTGA chrX:13730376-13730456 37 9.14e-06 TCGCGGGTTC GAGCCCCG CATTGGGCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGCCCCG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6968342-6968422 4.5e-06 69_[+1]_3 chrV:14463159-14463239 4.5e-06 46_[+1]_26 chrX:16930935-16931015 4.5e-06 19_[+1]_53 chrI:6847129-6847209 4.5e-06 26_[+1]_46 chrIV:13398834-13398914 9.1e-06 34_[+1]_38 chrX:13730376-13730456 9.1e-06 36_[+1]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGCCCCG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAGCCCCG width=8 seqs=6 chrII:6968342-6968422 ( 70) CAGCCCCG 1 chrV:14463159-14463239 ( 47) CAGCCCCG 1 chrX:16930935-16931015 ( 20) CAGCCCCG 1 chrI:6847129-6847209 ( 27) CAGCCCCG 1 chrIV:13398834-13398914 ( 35) GAGCCCCG 1 chrX:13730376-13730456 ( 37) GAGCCCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGCCCCG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.0178 E= 3.4e+002 -923 172 66 -923 173 -923 -923 -923 -923 -923 225 -923 -923 230 -923 -923 -923 230 -923 -923 -923 230 -923 -923 -923 230 -923 -923 -923 -923 225 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGCCCCG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.4e+002 0.000000 0.666667 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGCCCCG MEME-1 regular expression -------------------------------------------------------------------------------- [CG]AGCCCCG -------------------------------------------------------------------------------- Time 5.09 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCGCGC MEME-2 width = 8 sites = 3 llr = 38 E-value = 4.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:a:a:a probability G ::a:a:a: matrix T :::::::: bits 2.3 ******** 2.1 ******** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCGCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:6968342-6968422 59 3.11e-06 TTTTTCAGGG CCGCGCGC ACGCAGCCCC chrV:14463159-14463239 36 3.11e-06 TTTTTCAGGG CCGCGCGC ACGCAGCCCC chrI:6847129-6847209 16 3.11e-06 CTTTTCAGGG CCGCGCGC ACGCAGCCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6968342-6968422 3.1e-06 58_[+2]_14 chrV:14463159-14463239 3.1e-06 35_[+2]_37 chrI:6847129-6847209 3.1e-06 15_[+2]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCGCGC width=8 seqs=3 chrII:6968342-6968422 ( 59) CCGCGCGC 1 chrV:14463159-14463239 ( 36) CCGCGCGC 1 chrI:6847129-6847209 ( 16) CCGCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.2293 E= 4.3e+003 -823 230 -823 -823 -823 230 -823 -823 -823 -823 225 -823 -823 230 -823 -823 -823 -823 225 -823 -823 230 -823 -823 -823 -823 225 -823 -823 230 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 4.3e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-2 regular expression -------------------------------------------------------------------------------- CCGCGCGC -------------------------------------------------------------------------------- Time 8.89 secs. ******************************************************************************** ******************************************************************************** MOTIF AMTTTTBD MEME-3 width = 8 sites = 73 llr = 513 E-value = 6.6e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AMTTTTBD MEME-3 Description -------------------------------------------------------------------------------- Simplified A a6:::::3 pos.-specific C :3::::41 probability G ::::::33 matrix T :2aaaa34 bits 2.3 2.1 1.8 **** 1.6 * **** Relative 1.4 * **** Entropy 1.2 * **** (10.1 bits) 0.9 * **** 0.7 * **** 0.5 ******* 0.2 ******* 0.0 -------- Multilevel AATTTTCT consensus C GA sequence TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMTTTTBD MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:11374397-11374477 18 6.02e-05 GAATTAAATT AATTTTCT CCAGCTTGTC chrIII:4414249-4414329 43 6.02e-05 TTTTTTGTGA AATTTTCT ATAATTTTTT chrI:9167132-9167212 63 6.02e-05 TGCCGCCAAC AATTTTCG GCTCATTTTC chrV:5592142-5592222 52 6.02e-05 ATAATTAATA AATTTTCT CGGAATATAA chrIV:4468219-4468299 28 6.02e-05 AAAAGCATAA AATTTTCG TTAATATATA chrV:10887701-10887781 64 6.02e-05 ATTGTATGAG AATTTTCT CAAACAAAA chrI:3152817-3152897 30 6.02e-05 GGAAAGAAAT AATTTTCT ATTTTTTGTA chrIII:1625908-1625988 48 6.02e-05 taaaaactat aattttct ttgaaaatcg chrV:10235848-10235928 67 6.02e-05 AAAATCACAA AATTTTCT TAGAAT chrIV:2497922-2498002 61 6.02e-05 AAAAACGGCA AATTTTCG GTTTTTTTCA chrIII:11252044-11252124 31 6.02e-05 attattatta aattttct tgttgttgtt chrI:8135281-8135361 14 1.59e-04 AAAAACAAAT AATTTTGT TGAAAAGTCT chrIII:9462926-9463006 41 1.59e-04 TAAATGATTG AATTTTGT AACGTTAGCG chrIII:8685991-8686071 64 1.59e-04 AACGACCTAC AATTTTGG AGGAAAAAC chrX:4148346-4148426 9 1.59e-04 TTAATTAA AATTTTGG CAAATTTAAG chrV:5285114-5285194 38 1.59e-04 CAGAGTCACT AATTTTGG TGAACGGCCA chrX:1487176-1487256 10 1.59e-04 AAAAGAGCC AATTTTCA GGTGGTGCAT chrIV:9738761-9738841 26 1.59e-04 CAGTTAATCA AATTTTCA GCTGTTCGCC chrII:6587487-6587567 43 2.00e-04 TCACAGTATA ACTTTTCG GAATTTCTAA chrV:6606168-6606248 70 2.00e-04 AATATTCAAA ACTTTTCG AAA chrIV:7397473-7397553 18 2.00e-04 CCCCACTATG ACTTTTCT CATTGTTTTA chrIV:8741217-8741297 43 2.00e-04 GGAAATGACA ACTTTTCT CGAATAACTC chrIV:4317324-4317404 72 2.00e-04 ATTATTTCTG ACTTTTCT C chrV:1875689-1875769 12 2.38e-04 AAATTTCTTG AATTTTGA GGAGTCACCA chrII:5353815-5353895 44 2.38e-04 TGAACGCCAA AATTTTGA GCCACTTGAC chrV:1476794-1476874 22 2.38e-04 ACGCGTGGAA AATTTTGA AAGGAAACAA chrI:6094466-6094546 31 2.38e-04 gcaaatgcga aattttga gactatctta chrII:11966719-11966799 19 2.38e-04 TTTCAGGGAG AATTTTGA GTTTAAACAA chrIV:7083366-7083446 52 3.04e-04 AGAGCGCCTG ACTTTTCA TGAGCTTCGA chrIII:9051300-9051380 58 3.04e-04 TACAAACCCT ACTTTTGG AAGATGAAAA chrV:20497753-20497833 21 3.04e-04 tATGTACATT ACTTTTCA AGTAGGTCAA chrI:6847129-6847209 5 3.04e-04 ACCC ACTTTTCA GGGCCGCGCG chrIII:12499380-12499460 19 3.04e-04 ATGTTCTGAA ACTTTTGT GAATATTGTT chrIII:13299283-13299363 37 3.04e-04 ATTTTTTAAA ACTTTTGT TGTCTTTTCC chrI:3909832-3909912 4 3.04e-04 ATC ACTTTTGG AATAGATTTC chrIII:4471082-4471162 5 3.89e-04 CTGG AATTTTTT ATAAACTAGA chrIII:8449624-8449704 38 3.89e-04 TCTGATATTT AATTTTTT TTTCATTTAA chrI:11177379-11177459 48 3.89e-04 GCCTCAACCA AATTTTTT TTTGCAAAAA chrIII:7329304-7329384 70 3.89e-04 CATATATCCA AATTTTTG AAC chrV:18496692-18496772 4 3.89e-04 CAC AATTTTTT AAATTTAAGG chrIV:991521-991601 6 3.89e-04 CTATT AATTTTTG AATAAAGGAT chrIV:2768452-2768532 7 3.89e-04 TTTCAA AATTTTTG GCGTCTGGAT chrIV:11147150-11147230 39 3.89e-04 GGACGAGAAG AATTTTTG CTTCTAATGT chrI:12045402-12045482 72 3.89e-04 AAATCGATAG AATTTTTT G chrIV:8538525-8538605 32 3.89e-04 ACGTGCTTAA AATTTTTT TGTGGTACAT chrI:3834168-3834248 16 3.89e-04 GCTCTTTTTG AATTTTTT GCCGCCATCA chrIII:6171039-6171119 30 3.89e-04 ACCTACATTT AATTTTTT TTGCAGCGAG chrI:11745663-11745743 33 3.89e-04 ccgatttcaa aatttttg gctaacggtt chrI:14718966-14719046 50 4.15e-04 ATTGCAATAA ACTTTTGA GTGTAACTCC chrV:20164447-20164527 17 4.15e-04 AAATTTGTCA ACTTTTGA AATAATAAGG chrIII:5277985-5278065 51 4.15e-04 CAAGGTCCTC ACTTTTGA CTGGATATGA chrI:7656769-7656849 62 4.66e-04 TTCACAAGTT AATTTTTA GTCGGGACGA chrIII:11917753-11917833 8 4.66e-04 TGAGCAT AATTTTTA ATTCTTATTT chrV:11076320-11076400 7 5.23e-04 ccacga actttttg cgcagtaaga chrIII:6195922-6196002 6 5.23e-04 TTAAT ACTTTTTT TTAATACTAG chrI:6838285-6838365 44 5.82e-04 TTCGTGTTTC ACTTTTTA TATTTACAGA chrIII:3069406-3069486 39 6.65e-04 AATTCCTAGG ATTTTTCG TTCAAAATGT chrIV:15011320-15011400 34 6.65e-04 AAAGTTCGTG AATTTTGC AAAAAGCGGC chrIII:7738034-7738114 2 6.65e-04 T AATTTTGC GAAAATTCAT chrIV:2765066-2765146 73 6.65e-04 agttgaaaac atttttct chrIV:7240716-7240796 72 6.65e-04 tctcgttagg aattttgc g chrIII:12906849-12906929 73 6.81e-04 ACTTTTTCTG ACTTTTCC chrII:6968342-6968422 48 7.75e-04 AAACTTTAAT ATTTTTCA GGGCCGCGCG chrI:6093449-6093529 10 7.75e-04 AATATTTCG ATTTTTCA GCTCGTTGAC chrIII:4937451-4937531 40 7.75e-04 TGAAACTTGA ATTTTTCA AACTTCAAAG chrV:20837850-20837930 42 7.75e-04 ATATTTTATC ATTTTTCA TCTTTCCGAT chrV:20784063-20784143 18 7.75e-04 TTTTTTATAC ATTTTTCA CAATTAGCAC chrIV:427109-427189 49 7.75e-04 TGAGGCAAGC ATTTTTGG CGAATAAAAT chrIV:2664924-2665004 72 7.92e-04 AGCCGGCAAC ACTTTTGC C chrV:6326655-6326735 46 8.63e-04 TTTGGAACAT ATTTTTGA ATAACGCATG chrI:5104754-5104834 54 9.43e-04 AATTAAACTG ATTTTTTT TATTTTCCAA chrI:7057967-7058047 3 9.43e-04 AC ATTTTTTG AAAATCCGTC chrIII:10214481-10214561 55 9.66e-04 ATAGGATTAA ACTTTTTC TAAACACGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMTTTTBD MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11374397-11374477 6e-05 17_[+3]_55 chrIII:4414249-4414329 6e-05 42_[+3]_30 chrI:9167132-9167212 6e-05 62_[+3]_10 chrV:5592142-5592222 6e-05 51_[+3]_21 chrIV:4468219-4468299 6e-05 27_[+3]_45 chrV:10887701-10887781 6e-05 63_[+3]_9 chrI:3152817-3152897 6e-05 29_[+3]_43 chrIII:1625908-1625988 6e-05 47_[+3]_25 chrV:10235848-10235928 6e-05 66_[+3]_6 chrIV:2497922-2498002 6e-05 60_[+3]_12 chrIII:11252044-11252124 6e-05 30_[+3]_42 chrI:8135281-8135361 0.00016 13_[+3]_59 chrIII:9462926-9463006 0.00016 40_[+3]_32 chrIII:8685991-8686071 0.00016 63_[+3]_9 chrX:4148346-4148426 0.00016 8_[+3]_64 chrV:5285114-5285194 0.00016 37_[+3]_35 chrX:1487176-1487256 0.00016 9_[+3]_63 chrIV:9738761-9738841 0.00016 25_[+3]_47 chrII:6587487-6587567 0.0002 42_[+3]_30 chrV:6606168-6606248 0.0002 69_[+3]_3 chrIV:7397473-7397553 0.0002 17_[+3]_55 chrIV:8741217-8741297 0.0002 42_[+3]_30 chrIV:4317324-4317404 0.0002 71_[+3]_1 chrV:1875689-1875769 0.00024 11_[+3]_61 chrII:5353815-5353895 0.00024 43_[+3]_29 chrV:1476794-1476874 0.00024 21_[+3]_51 chrI:6094466-6094546 0.00024 30_[+3]_42 chrII:11966719-11966799 0.00024 18_[+3]_54 chrIV:7083366-7083446 0.0003 51_[+3]_21 chrIII:9051300-9051380 0.0003 57_[+3]_15 chrV:20497753-20497833 0.0003 20_[+3]_52 chrI:6847129-6847209 0.0003 4_[+3]_68 chrIII:12499380-12499460 0.0003 18_[+3]_54 chrIII:13299283-13299363 0.0003 36_[+3]_36 chrI:3909832-3909912 0.0003 3_[+3]_69 chrIII:4471082-4471162 0.00039 4_[+3]_68 chrIII:8449624-8449704 0.00039 37_[+3]_35 chrI:11177379-11177459 0.00039 47_[+3]_25 chrIII:7329304-7329384 0.00039 69_[+3]_3 chrV:18496692-18496772 0.00039 3_[+3]_69 chrIV:991521-991601 0.00039 5_[+3]_67 chrIV:2768452-2768532 0.00039 6_[+3]_66 chrIV:11147150-11147230 0.00039 38_[+3]_34 chrI:12045402-12045482 0.00039 71_[+3]_1 chrIV:8538525-8538605 0.00039 31_[+3]_41 chrI:3834168-3834248 0.00039 15_[+3]_57 chrIII:6171039-6171119 0.00039 29_[+3]_43 chrI:11745663-11745743 0.00039 32_[+3]_40 chrI:14718966-14719046 0.00041 49_[+3]_23 chrV:20164447-20164527 0.00041 16_[+3]_56 chrIII:5277985-5278065 0.00041 50_[+3]_22 chrI:7656769-7656849 0.00047 61_[+3]_11 chrIII:11917753-11917833 0.00047 7_[+3]_65 chrV:11076320-11076400 0.00052 6_[+3]_66 chrIII:6195922-6196002 0.00052 5_[+3]_67 chrI:6838285-6838365 0.00058 43_[+3]_29 chrIII:3069406-3069486 0.00066 38_[+3]_34 chrIV:15011320-15011400 0.00066 33_[+3]_39 chrIII:7738034-7738114 0.00066 1_[+3]_71 chrIV:2765066-2765146 0.00066 72_[+3] chrIV:7240716-7240796 0.00066 71_[+3]_1 chrIII:12906849-12906929 0.00068 72_[+3] chrII:6968342-6968422 0.00077 47_[+3]_25 chrI:6093449-6093529 0.00077 9_[+3]_63 chrIII:4937451-4937531 0.00077 39_[+3]_33 chrV:20837850-20837930 0.00077 41_[+3]_31 chrV:20784063-20784143 0.00077 17_[+3]_55 chrIV:427109-427189 0.00077 48_[+3]_24 chrIV:2664924-2665004 0.00079 71_[+3]_1 chrV:6326655-6326735 0.00086 45_[+3]_27 chrI:5104754-5104834 0.00094 53_[+3]_19 chrI:7057967-7058047 0.00094 2_[+3]_70 chrIII:10214481-10214561 0.00097 54_[+3]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMTTTTBD MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AMTTTTBD width=8 seqs=73 chrI:11374397-11374477 ( 18) AATTTTCT 1 chrIII:4414249-4414329 ( 43) AATTTTCT 1 chrI:9167132-9167212 ( 63) AATTTTCG 1 chrV:5592142-5592222 ( 52) AATTTTCT 1 chrIV:4468219-4468299 ( 28) AATTTTCG 1 chrV:10887701-10887781 ( 64) AATTTTCT 1 chrI:3152817-3152897 ( 30) AATTTTCT 1 chrIII:1625908-1625988 ( 48) AATTTTCT 1 chrV:10235848-10235928 ( 67) AATTTTCT 1 chrIV:2497922-2498002 ( 61) AATTTTCG 1 chrIII:11252044-11252124 ( 31) AATTTTCT 1 chrI:8135281-8135361 ( 14) AATTTTGT 1 chrIII:9462926-9463006 ( 41) AATTTTGT 1 chrIII:8685991-8686071 ( 64) AATTTTGG 1 chrX:4148346-4148426 ( 9) AATTTTGG 1 chrV:5285114-5285194 ( 38) AATTTTGG 1 chrX:1487176-1487256 ( 10) AATTTTCA 1 chrIV:9738761-9738841 ( 26) AATTTTCA 1 chrII:6587487-6587567 ( 43) ACTTTTCG 1 chrV:6606168-6606248 ( 70) ACTTTTCG 1 chrIV:7397473-7397553 ( 18) ACTTTTCT 1 chrIV:8741217-8741297 ( 43) ACTTTTCT 1 chrIV:4317324-4317404 ( 72) ACTTTTCT 1 chrV:1875689-1875769 ( 12) AATTTTGA 1 chrII:5353815-5353895 ( 44) AATTTTGA 1 chrV:1476794-1476874 ( 22) AATTTTGA 1 chrI:6094466-6094546 ( 31) AATTTTGA 1 chrII:11966719-11966799 ( 19) AATTTTGA 1 chrIV:7083366-7083446 ( 52) ACTTTTCA 1 chrIII:9051300-9051380 ( 58) ACTTTTGG 1 chrV:20497753-20497833 ( 21) ACTTTTCA 1 chrI:6847129-6847209 ( 5) ACTTTTCA 1 chrIII:12499380-12499460 ( 19) ACTTTTGT 1 chrIII:13299283-13299363 ( 37) ACTTTTGT 1 chrI:3909832-3909912 ( 4) ACTTTTGG 1 chrIII:4471082-4471162 ( 5) AATTTTTT 1 chrIII:8449624-8449704 ( 38) AATTTTTT 1 chrI:11177379-11177459 ( 48) AATTTTTT 1 chrIII:7329304-7329384 ( 70) AATTTTTG 1 chrV:18496692-18496772 ( 4) AATTTTTT 1 chrIV:991521-991601 ( 6) AATTTTTG 1 chrIV:2768452-2768532 ( 7) AATTTTTG 1 chrIV:11147150-11147230 ( 39) AATTTTTG 1 chrI:12045402-12045482 ( 72) AATTTTTT 1 chrIV:8538525-8538605 ( 32) AATTTTTT 1 chrI:3834168-3834248 ( 16) AATTTTTT 1 chrIII:6171039-6171119 ( 30) AATTTTTT 1 chrI:11745663-11745743 ( 33) AATTTTTG 1 chrI:14718966-14719046 ( 50) ACTTTTGA 1 chrV:20164447-20164527 ( 17) ACTTTTGA 1 chrIII:5277985-5278065 ( 51) ACTTTTGA 1 chrI:7656769-7656849 ( 62) AATTTTTA 1 chrIII:11917753-11917833 ( 8) AATTTTTA 1 chrV:11076320-11076400 ( 7) ACTTTTTG 1 chrIII:6195922-6196002 ( 6) ACTTTTTT 1 chrI:6838285-6838365 ( 44) ACTTTTTA 1 chrIII:3069406-3069486 ( 39) ATTTTTCG 1 chrIV:15011320-15011400 ( 34) AATTTTGC 1 chrIII:7738034-7738114 ( 2) AATTTTGC 1 chrIV:2765066-2765146 ( 73) ATTTTTCT 1 chrIV:7240716-7240796 ( 72) AATTTTGC 1 chrIII:12906849-12906929 ( 73) ACTTTTCC 1 chrII:6968342-6968422 ( 48) ATTTTTCA 1 chrI:6093449-6093529 ( 10) ATTTTTCA 1 chrIII:4937451-4937531 ( 40) ATTTTTCA 1 chrV:20837850-20837930 ( 42) ATTTTTCA 1 chrV:20784063-20784143 ( 18) ATTTTTCA 1 chrIV:427109-427189 ( 49) ATTTTTGG 1 chrIV:2664924-2665004 ( 72) ACTTTTGC 1 chrV:6326655-6326735 ( 46) ATTTTTGA 1 chrI:5104754-5104834 ( 54) ATTTTTTT 1 chrI:7057967-7058047 ( 3) ATTTTTTG 1 chrIII:10214481-10214561 ( 55) ACTTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMTTTTBD MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.76163 E= 6.6e-004 173 -1283 -1283 -1283 89 51 -1283 -92 -1283 -1283 -1283 181 -1283 -1283 -1283 181 -1283 -1283 -1283 181 -1283 -1283 -1283 181 -1283 97 58 1 0 -130 31 32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMTTTTBD MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 6.6e-004 1.000000 0.000000 0.000000 0.000000 0.561644 0.287671 0.000000 0.150685 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.397260 0.315068 0.287671 0.301370 0.082192 0.260274 0.356164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMTTTTBD MEME-3 regular expression -------------------------------------------------------------------------------- A[AC]TTTT[CGT][TAG] -------------------------------------------------------------------------------- Time 12.63 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCCGCCC MEME-4 width = 8 sites = 3 llr = 37 E-value = 4.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCCGCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aa:aaa probability G ::::a::: matrix T :a:::::: bits 2.3 * ****** 2.1 * ****** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTCCGCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:8431713-8431793 61 4.07e-06 GTCGCGCAGA CTCCGCCC ATAATGTAGG chrI:12919572-12919652 9 4.07e-06 TCAGATTC CTCCGCCC AGTGGGATGG chrIV:7240716-7240796 42 4.07e-06 actgaaaatg ctccgccc ctaaaccatg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:8431713-8431793 4.1e-06 60_[+4]_12 chrI:12919572-12919652 4.1e-06 8_[+4]_64 chrIV:7240716-7240796 4.1e-06 41_[+4]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCCGCCC width=8 seqs=3 chrIV:8431713-8431793 ( 61) CTCCGCCC 1 chrI:12919572-12919652 ( 9) CTCCGCCC 1 chrIV:7240716-7240796 ( 42) CTCCGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.0179 E= 4.9e+003 -823 230 -823 -823 -823 -823 -823 181 -823 230 -823 -823 -823 230 -823 -823 -823 -823 225 -823 -823 230 -823 -823 -823 230 -823 -823 -823 230 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 4.9e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCC MEME-4 regular expression -------------------------------------------------------------------------------- CTCCGCCC -------------------------------------------------------------------------------- Time 16.26 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGCCGAC MEME-5 width = 8 sites = 4 llr = 47 E-value = 1.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGCCGAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::8: pos.-specific C a::aa:3a probability G :aa::a:: matrix T :::::::: bits 2.3 ****** * 2.1 ****** * 1.8 ****** * 1.6 ****** * Relative 1.4 ****** * Entropy 1.2 ******** (17.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGCCGAC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:11759432-11759512 40 4.66e-06 GAGAAAGAGA CGGCCGAC AGAAGAGACA chrIV:7083366-7083446 27 4.66e-06 CACTTCATTC CGGCCGAC GACTACTAGA chrX:15362321-15362401 31 4.66e-06 ttatttggag cggccgac acgttccggg chrI:538704-538784 41 7.77e-06 ggcggcaccc cggccgcc ggagcagaag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:11759432-11759512 4.7e-06 39_[+5]_33 chrIV:7083366-7083446 4.7e-06 26_[+5]_46 chrX:15362321-15362401 4.7e-06 30_[+5]_42 chrI:538704-538784 7.8e-06 40_[+5]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGCCGAC width=8 seqs=4 chrII:11759432-11759512 ( 40) CGGCCGAC 1 chrIV:7083366-7083446 ( 27) CGGCCGAC 1 chrX:15362321-15362401 ( 31) CGGCCGAC 1 chrI:538704-538784 ( 41) CGGCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 1.9e+004 -865 230 -865 -865 -865 -865 225 -865 -865 -865 225 -865 -865 230 -865 -865 -865 230 -865 -865 -865 -865 225 -865 131 31 -865 -865 -865 230 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.9e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGAC MEME-5 regular expression -------------------------------------------------------------------------------- CGGCCG[AC]C -------------------------------------------------------------------------------- Time 19.85 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:9738761-9738841 6.20e-02 80 chrI:6498597-6498677 9.13e-01 80 chrII:7075950-7076030 9.16e-01 80 chrIII:5946937-5947017 7.30e-01 80 chrX:6536079-6536159 4.66e-01 80 chrI:6320558-6320638 9.83e-01 80 chrV:11119495-11119575 9.25e-01 80 chrIII:11252044-11252124 3.68e-02 30_[+3(6.02e-05)]_42 chrV:8030636-8030716 5.77e-01 80 chrI:9420703-9420783 4.51e-01 80 chrII:10934084-10934164 4.30e-01 80 chrIV:2497922-2498002 3.02e-01 60_[+3(6.02e-05)]_12 chrI:11745663-11745743 1.41e-01 80 chrIII:6171039-6171119 5.60e-01 80 chrIV:7240716-7240796 6.24e-05 41_[+4(4.07e-06)]_31 chrIV:4317324-4317404 5.81e-01 80 chrII:11618912-11618992 7.39e-01 80 chrIV:9095429-9095509 8.47e-02 80 chrIV:8741217-8741297 5.78e-01 80 chrIII:12607433-12607513 9.58e-01 80 chrIV:2765066-2765146 5.99e-01 80 chrIV:3032171-3032251 8.05e-01 80 chrIII:11702043-11702123 3.03e-03 12_[+2(9.97e-05)]_2_[+2(9.97e-05)]_\ 12_[+2(9.97e-05)]_30 chrII:9617480-9617560 9.13e-01 80 chrI:7019454-7019534 2.42e-01 80 chrIII:11917753-11917833 4.49e-01 80 chrIII:6148855-6148935 9.90e-01 80 chrI:4137154-4137234 9.98e-01 80 chrIII:7738034-7738114 8.07e-01 80 chrI:3909832-3909912 3.91e-01 80 chrIII:5557574-5557654 7.17e-01 80 chrV:10238076-10238156 4.45e-01 80 chrIII:3653250-3653330 9.33e-01 80 chrII:4912114-4912194 3.74e-01 80 chrII:10951467-10951547 2.65e-01 80 chrIV:8261499-8261579 5.58e-01 80 chrIII:11694675-11694755 4.57e-02 80 chrIV:427109-427189 1.82e-01 80 chrV:14352007-14352087 9.82e-01 80 chrI:5620908-5620988 8.22e-01 80 chrI:6188452-6188532 1.00e+00 80 chrIV:11146082-11146162 8.00e-01 80 chrX:1487176-1487256 1.44e-01 80 chrV:1263513-1263593 4.95e-02 80 chrX:16564666-16564746 6.70e-02 80 chrV:5285114-5285194 2.98e-01 80 chrI:3834168-3834248 5.32e-02 80 chrIV:15049574-15049654 7.20e-01 80 chrIV:7397473-7397553 3.90e-03 80 chrIV:4084747-4084827 8.51e-01 80 chrIII:13299283-13299363 6.62e-01 80 chrIII:13370690-13370770 9.34e-01 80 chrV:6606168-6606248 5.83e-01 80 chrI:7057967-7058047 4.70e-01 80 chrIV:15900397-15900477 8.06e-01 80 chrII:11966719-11966799 6.13e-01 80 chrIV:6588447-6588527 9.84e-01 80 chrIV:16657636-16657716 7.91e-01 80 chrIV:8538525-8538605 6.67e-01 80 chrIV:7253222-7253302 6.69e-01 80 chrI:12919572-12919652 1.13e-03 8_[+4(4.07e-06)]_64 chrIV:15011320-15011400 4.73e-01 80 chrIV:13251040-13251120 6.93e-01 80 chrI:9757843-9757923 9.90e-01 80 chrX:4148591-4148671 9.86e-01 80 chrV:12320585-12320665 7.66e-01 80 chrIII:7141614-7141694 1.48e-01 80 chrX:15362321-15362401 3.12e-02 30_[+5(4.66e-06)]_42 chrIII:6195922-6196002 6.70e-01 80 chrIII:65336-65416 2.12e-01 80 chrX:4148346-4148426 2.66e-01 80 chrIII:7494923-7495003 5.48e-02 67_[+2(9.97e-05)]_5 chrI:12045402-12045482 4.10e-01 80 chrI:11571893-11571973 7.79e-01 80 chrIV:7962130-7962210 1.82e-01 80 chrV:11076320-11076400 4.36e-01 80 chrV:6278650-6278730 9.89e-01 80 chrIII:10506134-10506214 9.79e-01 80 chrV:10235848-10235928 2.13e-03 66_[+3(6.02e-05)]_6 chrI:6094466-6094546 5.32e-01 80 chrII:11974485-11974565 9.99e-01 80 chrV:20784063-20784143 8.27e-01 80 chrV:13796710-13796790 3.98e-01 80 chrII:9934064-9934144 9.99e-01 80 chrIV:5541450-5541530 1.11e-01 80 chrIII:3740025-3740105 2.82e-01 80 chrII:8939142-8939222 1.78e-01 80 chrIII:8685991-8686071 1.10e-01 80 chrIV:9339011-9339091 9.97e-01 80 chrV:1476794-1476874 5.06e-01 80 chrIV:396598-396678 9.45e-01 80 chrII:8358745-8358825 9.13e-01 80 chrIV:11147150-11147230 1.75e-01 80 chrIII:11091287-11091367 4.64e-01 80 chrV:13567143-13567223 9.62e-01 80 chrI:538704-538784 6.30e-04 40_[+5(7.77e-06)]_32 chrV:13649986-13650066 9.98e-01 80 chrII:10547379-10547459 3.60e-01 80 chrV:727634-727714 1.27e-01 80 chrIII:11830575-11830655 3.46e-01 80 chrV:20837850-20837930 5.28e-01 80 chrIII:4937451-4937531 8.31e-01 80 chrII:7866330-7866410 9.38e-01 80 chrV:10477535-10477615 7.61e-01 80 chrIII:1616733-1616813 8.23e-01 80 chrI:10179097-10179177 1.16e-01 80 chrIV:2768452-2768532 6.92e-01 80 chrIII:4491515-4491595 3.35e-01 80 chrIII:6958991-6959071 8.82e-01 80 chrV:6276734-6276814 9.20e-01 80 chrIII:5879650-5879730 6.53e-01 80 chrX:6522688-6522768 9.91e-01 80 chrIII:5230651-5230731 1.63e-01 80 chrIV:2765278-2765358 5.25e-01 80 chrIII:5273508-5273588 1.00e+00 80 chrIV:9774249-9774329 9.93e-01 80 chrI:10516803-10516883 3.98e-01 80 chrII:8929934-8930014 5.30e-01 80 chrIV:991521-991601 2.25e-01 80 chrV:18496692-18496772 1.32e-01 80 chrIII:7329304-7329384 2.64e-01 80 chrIII:5277985-5278065 4.12e-01 80 chrV:14028317-14028397 9.38e-01 80 chrI:6093449-6093529 2.33e-03 80 chrV:20164447-20164527 6.40e-01 80 chrI:12654772-12654852 7.87e-01 80 chrII:14155863-14155943 9.75e-02 80 chrII:4042812-4042892 9.01e-01 80 chrIV:1711265-1711345 8.66e-02 80 chrV:8518582-8518662 8.78e-01 80 chrIV:8377617-8377697 6.82e-01 80 chrIII:6931992-6932072 8.52e-01 80 chrI:11177379-11177459 3.76e-02 80 chrI:7656769-7656849 6.60e-01 80 chrV:4823911-4823991 9.90e-01 80 chrIII:12499380-12499460 4.02e-01 80 chrIII:7338742-7338822 9.74e-01 80 chrIII:7180954-7181034 9.72e-01 80 chrX:13730376-13730456 1.83e-02 36_[+1(9.14e-06)]_36 chrIII:1625908-1625988 3.68e-01 47_[+3(6.02e-05)]_25 chrIII:9441318-9441398 6.34e-01 80 chrII:8441611-8441691 2.67e-01 80 chrII:5353815-5353895 7.32e-02 80 chrIV:10934029-10934109 4.42e-01 80 chrIII:344053-344133 6.67e-01 80 chrIV:13398834-13398914 1.11e-03 34_[+1(9.14e-06)]_38 chrV:6326655-6326735 7.49e-01 80 chrIII:8443730-8443810 2.17e-01 80 chrV:4694730-4694810 9.05e-01 80 chrII:11153025-11153105 9.44e-01 80 chrIII:4195511-4195591 4.56e-01 80 chrI:5866092-5866172 9.60e-01 80 chrIII:7142521-7142601 6.49e-01 80 chrII:14351173-14351253 7.86e-01 80 chrIII:11921824-11921904 9.56e-01 80 chrIII:3069406-3069486 2.95e-01 80 chrV:9327200-9327280 9.99e-01 80 chrIII:9805130-9805210 6.00e-01 80 chrIV:7962334-7962414 4.83e-01 80 chrIII:9462926-9463006 4.69e-01 80 chrV:16593006-16593086 9.95e-01 80 chrII:12736801-12736881 2.51e-01 80 chrV:11122571-11122651 3.81e-01 80 chrI:3152817-3152897 2.12e-01 29_[+3(6.02e-05)]_43 chrII:11880689-11880769 9.05e-01 80 chrI:5372383-5372463 9.54e-01 80 chrIII:12250673-12250753 7.91e-01 80 chrI:6847129-6847209 1.85e-07 15_[+2(3.11e-06)]_3_[+1(4.48e-06)]_\ 46 chrIV:13388870-13388950 2.00e-01 80 chrIII:13464604-13464684 8.65e-01 80 chrIII:5653630-5653710 4.43e-01 80 chrI:7872396-7872476 7.31e-01 80 chrI:6219701-6219781 9.99e-01 80 chrI:7079404-7079484 9.71e-01 80 chrI:2878595-2878675 9.97e-01 80 chrV:10887701-10887781 3.81e-02 63_[+3(6.02e-05)]_9 chrII:11149945-11150025 4.69e-01 80 chrV:20785624-20785704 1.00e+00 80 chrI:8612426-8612506 9.06e-01 80 chrV:16225438-16225518 1.00e+00 80 chrII:11376691-11376771 5.64e-01 80 chrII:11167079-11167159 9.99e-01 80 chrI:10085855-10085935 9.99e-01 80 chrIII:12599071-12599151 8.36e-01 80 chrII:8933851-8933931 2.21e-01 80 chrV:20497753-20497833 6.31e-01 80 chrV:6221469-6221549 1.00e+00 80 chrII:11224381-11224461 9.46e-01 80 chrX:17628483-17628563 6.22e-01 80 chrV:11980432-11980512 9.79e-01 80 chrI:14058681-14058761 3.49e-01 80 chrV:1875689-1875769 5.17e-01 80 chrX:16930935-16931015 4.29e-03 19_[+1(4.48e-06)]_53 chrI:8135281-8135361 5.22e-01 80 chrIII:5506421-5506501 1.09e-01 80 chrIII:1420006-1420086 3.42e-01 80 chrIII:835947-836027 8.80e-01 80 chrI:6499564-6499644 5.92e-01 80 chrIV:4468219-4468299 2.07e-01 27_[+3(6.02e-05)]_45 chrX:12889941-12890021 7.56e-01 80 chrIII:12906849-12906929 6.95e-01 80 chrV:5667483-5667563 4.80e-01 80 chrII:14018361-14018441 6.42e-01 80 chrI:14718966-14719046 5.48e-01 80 chrV:9734247-9734327 9.80e-01 80 chrIII:9051300-9051380 2.56e-01 80 chrIII:8449624-8449704 7.05e-01 80 chrIV:3336757-3336837 2.13e-01 80 chrV:20847999-20848079 5.61e-01 80 chrIV:2390548-2390628 9.88e-01 80 chrIV:7083366-7083446 2.57e-04 26_[+5(4.66e-06)]_46 chrIV:11956624-11956704 9.73e-01 80 chrIV:2664924-2665004 7.35e-02 80 chrI:8868524-8868604 9.79e-01 80 chrII:15004545-15004625 8.63e-01 80 chrIII:13464804-13464884 9.74e-01 80 chrI:5104754-5104834 2.79e-01 80 chrX:1503672-1503752 4.42e-01 80 chrII:6587487-6587567 6.25e-02 80 chrIII:9054070-9054150 8.70e-01 80 chrIII:4172304-4172384 9.50e-01 80 chrV:5592142-5592222 7.80e-02 51_[+3(6.02e-05)]_21 chrIII:6606236-6606316 6.01e-01 80 chrIII:9782101-9782181 9.90e-01 80 chrII:11759432-11759512 4.77e-02 39_[+5(4.66e-06)]_33 chrIV:11026154-11026234 1.32e-01 80 chrV:12510134-12510214 1.00e+00 80 chrII:2974063-2974143 3.49e-02 66_[+2(9.97e-05)]_6 chrX:4969256-4969336 1.00e+00 80 chrI:2514301-2514381 1.34e-02 63_[+2(9.97e-05)]_9 chrIII:12250890-12250970 9.89e-01 80 chrIII:8449385-8449465 9.62e-01 80 chrIV:17281428-17281508 9.66e-01 80 chrV:14463159-14463239 2.24e-06 35_[+2(3.11e-06)]_3_[+1(4.48e-06)]_\ 26 chrI:6838285-6838365 6.93e-01 80 chrI:1701449-1701529 9.97e-01 80 chrIV:9477707-9477787 4.99e-01 80 chrV:14354459-14354539 9.54e-01 80 chrIII:10214481-10214561 2.95e-01 80 chrIV:8431713-8431793 1.70e-02 60_[+4(4.07e-06)]_12 chrIII:3249150-3249230 9.52e-01 80 chrIII:4471082-4471162 3.70e-01 80 chrI:9167132-9167212 1.21e-02 62_[+3(6.02e-05)]_10 chrIV:7984091-7984171 9.58e-01 80 chrIII:4414249-4414329 3.46e-01 42_[+3(6.02e-05)]_30 chrI:11374397-11374477 6.16e-04 17_[+3(6.02e-05)]_55 chrX:16056587-16056667 1.53e-01 80 chrII:8107184-8107264 4.73e-01 80 chrII:6968342-6968422 4.02e-07 58_[+2(3.11e-06)]_3_[+1(4.48e-06)]_\ 3 chrIII:5211286-5211366 1.46e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n05.farnam.hpc.yale.internal ********************************************************************************