******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/dmd-4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:4244051-4244131 1.0000 80 chrX:14862027-14862107 1.0000 80 chrV:18705844-18705924 1.0000 80 chrV:5284153-5284233 1.0000 80 chrIV:4245098-4245178 1.0000 80 chrM:13088-13168 1.0000 80 chrX:14868497-14868577 1.0000 80 chrV:5284716-5284796 1.0000 80 chrM:3923-4003 1.0000 80 chrIV:11071079-11071159 1.0000 80 chrM:10396-10476 1.0000 80 chrX:14859146-14859226 1.0000 80 chrV:16553090-16553170 1.0000 80 chrI:2487854-2487934 1.0000 80 chrIV:1687326-1687406 1.0000 80 chrIII:10857000-10857080 1.0000 80 chrIII:10811102-10811182 1.0000 80 chrIV:2891964-2892044 1.0000 80 chrIV:4702176-4702256 1.0000 80 chrV:18710172-18710252 1.0000 80 chrIV:6648860-6648940 1.0000 80 chrX:11474383-11474463 1.0000 80 chrIV:4241706-4241786 1.0000 80 chrIV:385242-385322 1.0000 80 chrI:10469078-10469158 1.0000 80 chrII:7635415-7635495 1.0000 80 chrV:4435610-4435690 1.0000 80 chrIII:3499995-3500075 1.0000 80 chrX:9102318-9102398 1.0000 80 chrI:6175246-6175326 1.0000 80 chrI:10462713-10462793 1.0000 80 chrII:13278521-13278601 1.0000 80 chrIV:9563908-9563988 1.0000 80 chrM:6409-6489 1.0000 80 chrV:12510066-12510146 1.0000 80 chrX:5820095-5820175 1.0000 80 chrIII:4947589-4947669 1.0000 80 chrV:6222345-6222425 1.0000 80 chrX:14858048-14858128 1.0000 80 chrI:10469282-10469362 1.0000 80 chrI:13421186-13421266 1.0000 80 chrIII:10123784-10123864 1.0000 80 chrX:14640140-14640220 1.0000 80 chrIII:3620751-3620831 1.0000 80 chrM:7409-7489 1.0000 80 chrI:7383203-7383283 1.0000 80 chrV:13396519-13396599 1.0000 80 chrV:7977926-7978006 1.0000 80 chrI:933469-933549 1.0000 80 chrIII:4948844-4948924 1.0000 80 chrII:1134621-1134701 1.0000 80 chrI:4941392-4941472 1.0000 80 chrX:5480235-5480315 1.0000 80 chrIII:510989-511069 1.0000 80 chrIII:11848487-11848567 1.0000 80 chrX:4222646-4222726 1.0000 80 chrIV:3227755-3227835 1.0000 80 chrIV:4401765-4401845 1.0000 80 chrI:890885-890965 1.0000 80 chrV:14443696-14443776 1.0000 80 chrI:11589097-11589177 1.0000 80 chrV:11083822-11083902 1.0000 80 chrII:10136776-10136856 1.0000 80 chrIV:14496568-14496648 1.0000 80 chrX:8156112-8156192 1.0000 80 chrV:14689666-14689746 1.0000 80 chrX:14862252-14862332 1.0000 80 chrV:1575887-1575967 1.0000 80 chrIII:10811308-10811388 1.0000 80 chrII:158476-158556 1.0000 80 chrI:6284982-6285062 1.0000 80 chrM:9104-9184 1.0000 80 chrX:13503949-13504029 1.0000 80 chrI:1213609-1213689 1.0000 80 chrV:1197399-1197479 1.0000 80 chrI:8134102-8134182 1.0000 80 chrV:8050199-8050279 1.0000 80 chrIV:16498195-16498275 1.0000 80 chrIV:7235622-7235702 1.0000 80 chrV:6359474-6359554 1.0000 80 chrIV:4465896-4465976 1.0000 80 chrX:11473299-11473379 1.0000 80 chrV:7746004-7746084 1.0000 80 chrV:10294103-10294183 1.0000 80 chrII:11537268-11537348 1.0000 80 chrX:7254695-7254775 1.0000 80 chrIV:11594392-11594472 1.0000 80 chrII:475925-476005 1.0000 80 chrII:11567554-11567634 1.0000 80 chrII:6741601-6741681 1.0000 80 chrI:2089034-2089114 1.0000 80 chrIII:1219706-1219786 1.0000 80 chrIII:5769899-5769979 1.0000 80 chrI:8970129-8970209 1.0000 80 chrII:4590887-4590967 1.0000 80 chrI:11221350-11221430 1.0000 80 chrX:5641539-5641619 1.0000 80 chrI:2254064-2254144 1.0000 80 chrI:12571798-12571878 1.0000 80 chrIV:12365438-12365518 1.0000 80 chrII:14469246-14469326 1.0000 80 chrII:14635340-14635420 1.0000 80 chrI:1415932-1416012 1.0000 80 chrIV:12621560-12621640 1.0000 80 chrX:11467482-11467562 1.0000 80 chrV:3587857-3587937 1.0000 80 chrII:6827433-6827513 1.0000 80 chrIV:4241949-4242029 1.0000 80 chrI:853312-853392 1.0000 80 chrII:2736987-2737067 1.0000 80 chrX:2432609-2432689 1.0000 80 chrV:4526960-4527040 1.0000 80 chrX:3826294-3826374 1.0000 80 chrIV:16995576-16995656 1.0000 80 chrII:6828429-6828509 1.0000 80 chrX:5541250-5541330 1.0000 80 chrX:16811743-16811823 1.0000 80 chrI:5140286-5140366 1.0000 80 chrIII:13293126-13293206 1.0000 80 chrI:9474930-9475010 1.0000 80 chrIII:6551701-6551781 1.0000 80 chrII:15026197-15026277 1.0000 80 chrI:913069-913149 1.0000 80 chrI:13470421-13470501 1.0000 80 chrX:13144406-13144486 1.0000 80 chrV:447250-447330 1.0000 80 chrV:12167221-12167301 1.0000 80 chrX:14491284-14491364 1.0000 80 chrII:12042295-12042375 1.0000 80 chrV:1154014-1154094 1.0000 80 chrIV:11524392-11524472 1.0000 80 chrIII:6537344-6537424 1.0000 80 chrIV:17108328-17108408 1.0000 80 chrII:13195418-13195498 1.0000 80 chrIII:3801794-3801874 1.0000 80 chrIV:2998877-2998957 1.0000 80 chrI:2996338-2996418 1.0000 80 chrIV:8066695-8066775 1.0000 80 chrIII:4666975-4667055 1.0000 80 chrI:4175950-4176030 1.0000 80 chrV:8663206-8663286 1.0000 80 chrIII:710151-710231 1.0000 80 chrI:10175391-10175471 1.0000 80 chrX:8969680-8969760 1.0000 80 chrV:4647913-4647993 1.0000 80 chrX:5064117-5064197 1.0000 80 chrV:12353598-12353678 1.0000 80 chrIV:2033169-2033249 1.0000 80 chrIV:1981147-1981227 1.0000 80 chrV:1197599-1197679 1.0000 80 chrX:5816509-5816589 1.0000 80 chrI:3740395-3740475 1.0000 80 chrIV:11310833-11310913 1.0000 80 chrI:1823208-1823288 1.0000 80 chrIV:7948504-7948584 1.0000 80 chrI:10642454-10642534 1.0000 80 chrII:4955546-4955626 1.0000 80 chrII:6491987-6492067 1.0000 80 chrX:13730803-13730883 1.0000 80 chrV:9980793-9980873 1.0000 80 chrX:9999262-9999342 1.0000 80 chrV:12039975-12040055 1.0000 80 chrX:5336738-5336818 1.0000 80 chrII:15008717-15008797 1.0000 80 chrIV:7654550-7654630 1.0000 80 chrV:6354462-6354542 1.0000 80 chrI:2821408-2821488 1.0000 80 chrM:1102-1182 1.0000 80 chrIII:3175146-3175226 1.0000 80 chrV:11029485-11029565 1.0000 80 chrII:7708752-7708832 1.0000 80 chrIV:2048987-2049067 1.0000 80 chrI:4967613-4967693 1.0000 80 chrIV:7387212-7387292 1.0000 80 chrV:11504879-11504959 1.0000 80 chrI:7711799-7711879 1.0000 80 chrI:6151576-6151656 1.0000 80 chrIII:6805596-6805676 1.0000 80 chrX:5984787-5984867 1.0000 80 chrI:10235313-10235393 1.0000 80 chrV:10858554-10858634 1.0000 80 chrI:14628154-14628234 1.0000 80 chrI:7936057-7936137 1.0000 80 chrX:7234885-7234965 1.0000 80 chrIII:3664372-3664452 1.0000 80 chrIV:12010577-12010657 1.0000 80 chrIII:8650408-8650488 1.0000 80 chrIII:12178156-12178236 1.0000 80 chrX:4504261-4504341 1.0000 80 chrIII:3476373-3476453 1.0000 80 chrIV:12771694-12771774 1.0000 80 chrII:11889526-11889606 1.0000 80 chrII:7001571-7001651 1.0000 80 chrM:12516-12596 1.0000 80 chrX:993103-993183 1.0000 80 chrII:14249527-14249607 1.0000 80 chrI:1271136-1271216 1.0000 80 chrIV:4702392-4702472 1.0000 80 chrX:5354648-5354728 1.0000 80 chrX:7651330-7651410 1.0000 80 chrIV:7486390-7486470 1.0000 80 chrV:53473-53553 1.0000 80 chrII:6383314-6383394 1.0000 80 chrV:13789569-13789649 1.0000 80 chrI:1251670-1251750 1.0000 80 chrIII:5603641-5603721 1.0000 80 chrX:5077954-5078034 1.0000 80 chrII:9646258-9646338 1.0000 80 chrX:16928291-16928371 1.0000 80 chrI:5176375-5176455 1.0000 80 chrI:8305547-8305627 1.0000 80 chrV:1943561-1943641 1.0000 80 chrI:6252923-6253003 1.0000 80 chrII:14408034-14408114 1.0000 80 chrII:11724771-11724851 1.0000 80 chrI:3176579-3176659 1.0000 80 chrIV:7818204-7818284 1.0000 80 chrX:5818367-5818447 1.0000 80 chrII:5836447-5836527 1.0000 80 chrIII:349641-349721 1.0000 80 chrV:11082596-11082676 1.0000 80 chrI:1070000-1070080 1.0000 80 chrIV:8016004-8016084 1.0000 80 chrX:9296745-9296825 1.0000 80 chrI:14606025-14606105 1.0000 80 chrX:12890279-12890359 1.0000 80 chrX:11034969-11035049 1.0000 80 chrIII:8865485-8865565 1.0000 80 chrIII:7659600-7659680 1.0000 80 chrIII:11091902-11091982 1.0000 80 chrIII:5503366-5503446 1.0000 80 chrX:10637537-10637617 1.0000 80 chrI:5377664-5377744 1.0000 80 chrI:14721585-14721665 1.0000 80 chrII:11959417-11959497 1.0000 80 chrIII:6137565-6137645 1.0000 80 chrIII:8319224-8319304 1.0000 80 chrX:5812129-5812209 1.0000 80 chrX:13251717-13251797 1.0000 80 chrIV:10503922-10504002 1.0000 80 chrIV:16382293-16382373 1.0000 80 chrIII:9104263-9104343 1.0000 80 chrV:9980994-9981074 1.0000 80 chrIV:16776149-16776229 1.0000 80 chrV:7465644-7465724 1.0000 80 chrIV:11857412-11857492 1.0000 80 chrIV:1824170-1824250 1.0000 80 chrX:3694320-3694400 1.0000 80 chrV:6880858-6880938 1.0000 80 chrII:14528366-14528446 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_dmd-4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/dmd-4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.25 C 0.242 G 0.248 T 0.26 Background letter frequencies (from file dataset with add-one prior applied): A 0.25 C 0.242 G 0.248 T 0.26 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YYYTTYTC MEME-1 width = 8 sites = 56 llr = 420 E-value = 4.9e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif YYYTTYTC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::::: pos.-specific C 666:35:a probability G :::::::: matrix T 444a75a: bits 2.0 * 1.8 * ** 1.6 * ** 1.4 * ** Relative 1.2 ** ** Entropy 1.0 ******* (10.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCTTTTC consensus TTT CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYYTTYTC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:6880858-6880938 73 3.03e-05 GGGCAGTGCT CCCTTTTC chrI:5176375-5176455 12 3.03e-05 TTTGCAGATC CCCTTTTC GTGGGGCCTC chrIV:4702392-4702472 46 3.03e-05 CGTTCTGCTC CCCTTTTC GTGGGGCCtc chrV:1197599-1197679 11 3.03e-05 CGTTCTGCTT CCCTTTTC GTGGGGACTC chrI:2996338-2996418 6 3.03e-05 TGCTC CCCTTTTC GTGGGGCCTC chrIII:6551701-6551781 44 3.03e-05 TTCGTATCTC CCCTTTTC GCAGATCCCC chrIV:12365438-12365518 5 3.03e-05 CTTT CCCTTTTC TTACTCCATT chrI:1213609-1213689 30 3.03e-05 CTCGCAGATC CCCTTCTC ATAGATCCCC chrIII:10811308-10811388 47 3.03e-05 TTCGTATCTC CCCTTTTC ATATCTCCCC chrIII:10123784-10123864 6 3.03e-05 TGCTC CCCTTTTC GTGGGGCCTC chrI:10469282-10469362 39 3.03e-05 CGTTCTGCTC CCCTTTTC GTGGGGCCTC chrV:16553090-16553170 27 3.03e-05 TTCGCAGATC CCCTTTTC GCAGATCCCC chrV:1154014-1154094 8 6.28e-05 TCTTCCT TCCTTCTC CACCGTCGTC chrV:11083822-11083902 8 6.28e-05 TTTTTCC TCCTTCTC TCAACTCTCT chrI:6252923-6253003 13 1.28e-04 TTTTAGTTCC CCTTTCTC GAATTTCTGT chrV:8663206-8663286 6 1.28e-04 TGATC CTCTTCTC TTATCCGCCT chrX:13144406-13144486 61 1.28e-04 GCTGCCCGTC CCTTTCTC CACATCTCTA chrI:5140286-5140366 69 1.28e-04 GGGGGCTCAA CTCTTCTC GGCA chrI:13421186-13421266 53 1.28e-04 TAAGCTCCGC CTCTTTTC TCCGGGTTTC chrIII:4947589-4947669 1 1.28e-04 . CTCTTCTC CGCCTTTCAC chrIII:6137565-6137645 2 2.26e-04 c ttcttttc gtttttctct chrII:14249527-14249607 30 2.26e-04 CATTTTGTCT TCTTTCTC AAGCCAAACC chrX:4504261-4504341 15 2.26e-04 ACCGCTGCAC TCTTTCTC TCTTGTTCTT chrIV:2048987-2049067 14 2.26e-04 CAATACTTTC TCTTTTTC TTTCTCATTT chrX:11467482-11467562 17 2.26e-04 ACCCCACACG TTCTTCTC ATTTCGAATG chrI:4941392-4941472 16 2.26e-04 ctccttcccg ccctcttc ttgatctctc chrI:933469-933549 40 2.26e-04 TCACCAATTA TCTTTCTC TCTGtggctt chrV:13396519-13396599 8 2.26e-04 AGCATCC CCCTCCTC TTCGTTTTGC chrX:14640140-14640220 46 2.26e-04 TCATCTCCAC CCCTCCTC CCCGCCTTCT chrX:11034969-11035049 19 2.61e-04 CTTCTTCTAT CTTTTCTC ATGTTGCCGT chrV:1943561-1943641 26 2.61e-04 CGCTCGTCTT CTTTTTTC CAGCTATTTT chrI:1823208-1823288 24 2.61e-04 AGAATGAATC CTTTTTTC CAGAACTTGC chrX:14859146-14859226 13 2.61e-04 CACTTTTCAC CTTTTCTC AGATTGTATT chrII:11889526-11889606 44 2.91e-04 ACCGTCTGCA TCCTCTTC ACCTCCCACA chrI:6151576-6151656 8 2.91e-04 GACCTCC TCCTCTTC CTCACAAACA chrV:4647913-4647993 21 2.91e-04 GGGCGGCGTA TCCTCCTC CGATTGGGGC chrIV:16995576-16995656 28 2.91e-04 CCCCGTCATT TCCTCTTC CACGGCCACG chrIV:16498195-16498275 1 2.91e-04 . tcctcctc tatctctatc chrV:4435610-4435690 15 2.91e-04 CTCCACCGAA TCCTCCTC CAATTGGTCC chrX:9999262-9999342 62 3.89e-04 GGTGGCTATG CTCTCTTC AGTGTCGTTT chrIII:4666975-4667055 30 3.89e-04 CATATTCACC CCTTCTTC CCCTAACTCC chrII:6828429-6828509 25 3.89e-04 CAATTAGACA CTCTCCTC TGCCAGCCGG chrX:2432609-2432689 4 3.89e-04 TTC CTCTCCTC CCGACTTTCC chrIV:12621560-12621640 54 3.89e-04 CAAAACGCAT TTTTTCTC ACGCAACGCA chrIV:4401765-4401845 20 3.89e-04 CAAAACGCAA TTTTTCTC ACGCAACGCA chrII:1134621-1134701 22 3.89e-04 CCAAACGCTA TTTTTCTC GAAGAAAACG chrX:14858048-14858128 28 3.89e-04 TTAAAATAAA TTTTTTTC TATTAGCCGA chrX:5820095-5820175 24 3.89e-04 GTCGGCCGTT TTTTTTTC GTGCTCTTGA chrI:10469078-10469158 7 3.89e-04 ACCCTA TTTTTCTC GAAGAAAACG chrIV:4702176-4702256 26 3.89e-04 CCAAACGCTA TTTTTCTC GAAGAAAACG chrIV:12771694-12771774 55 4.54e-04 CCCGCCCGCT TCTTCTTC CCGCGCGCGA chrII:15008717-15008797 41 4.87e-04 TTTCGAGCTG CTTTCCTC GCGTTCGTCT chrX:13251717-13251797 8 5.53e-04 AAGGGGC ACCTTTTC GCCGACCACC chrIII:710151-710231 15 5.53e-04 CCAAACTGAA ACCTTTTC ATAATGCAAA chrIV:3227755-3227835 17 6.20e-04 CACACTTTTT ACTTTTTC TGTGCTGCTC chrV:10858554-10858634 47 7.76e-04 CAAATGCACG CCCTTTCC GATATTCGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYYTTYTC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:6880858-6880938 3e-05 72_[+1] chrI:5176375-5176455 3e-05 11_[+1]_61 chrIV:4702392-4702472 3e-05 45_[+1]_27 chrV:1197599-1197679 3e-05 10_[+1]_62 chrI:2996338-2996418 3e-05 5_[+1]_67 chrIII:6551701-6551781 3e-05 43_[+1]_29 chrIV:12365438-12365518 3e-05 4_[+1]_68 chrI:1213609-1213689 3e-05 29_[+1]_43 chrIII:10811308-10811388 3e-05 46_[+1]_26 chrIII:10123784-10123864 3e-05 5_[+1]_67 chrI:10469282-10469362 3e-05 38_[+1]_34 chrV:16553090-16553170 3e-05 26_[+1]_46 chrV:1154014-1154094 6.3e-05 7_[+1]_65 chrV:11083822-11083902 6.3e-05 7_[+1]_65 chrI:6252923-6253003 0.00013 12_[+1]_60 chrV:8663206-8663286 0.00013 5_[+1]_67 chrX:13144406-13144486 0.00013 60_[+1]_12 chrI:5140286-5140366 0.00013 68_[+1]_4 chrI:13421186-13421266 0.00013 52_[+1]_20 chrIII:4947589-4947669 0.00013 [+1]_72 chrIII:6137565-6137645 0.00023 1_[+1]_71 chrII:14249527-14249607 0.00023 29_[+1]_43 chrX:4504261-4504341 0.00023 14_[+1]_58 chrIV:2048987-2049067 0.00023 13_[+1]_59 chrX:11467482-11467562 0.00023 16_[+1]_56 chrI:4941392-4941472 0.00023 15_[+1]_57 chrI:933469-933549 0.00023 39_[+1]_33 chrV:13396519-13396599 0.00023 7_[+1]_65 chrX:14640140-14640220 0.00023 45_[+1]_27 chrX:11034969-11035049 0.00026 18_[+1]_54 chrV:1943561-1943641 0.00026 25_[+1]_47 chrI:1823208-1823288 0.00026 23_[+1]_49 chrX:14859146-14859226 0.00026 12_[+1]_60 chrII:11889526-11889606 0.00029 43_[+1]_29 chrI:6151576-6151656 0.00029 7_[+1]_65 chrV:4647913-4647993 0.00029 20_[+1]_52 chrIV:16995576-16995656 0.00029 27_[+1]_45 chrIV:16498195-16498275 0.00029 [+1]_72 chrV:4435610-4435690 0.00029 14_[+1]_58 chrX:9999262-9999342 0.00039 61_[+1]_11 chrIII:4666975-4667055 0.00039 29_[+1]_43 chrII:6828429-6828509 0.00039 24_[+1]_48 chrX:2432609-2432689 0.00039 3_[+1]_69 chrIV:12621560-12621640 0.00039 53_[+1]_19 chrIV:4401765-4401845 0.00039 19_[+1]_53 chrII:1134621-1134701 0.00039 21_[+1]_51 chrX:14858048-14858128 0.00039 27_[+1]_45 chrX:5820095-5820175 0.00039 23_[+1]_49 chrI:10469078-10469158 0.00039 6_[+1]_66 chrIV:4702176-4702256 0.00039 25_[+1]_47 chrIV:12771694-12771774 0.00045 54_[+1]_18 chrII:15008717-15008797 0.00049 40_[+1]_32 chrX:13251717-13251797 0.00055 7_[+1]_65 chrIII:710151-710231 0.00055 14_[+1]_58 chrIV:3227755-3227835 0.00062 16_[+1]_56 chrV:10858554-10858634 0.00078 46_[+1]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYYTTYTC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YYYTTYTC width=8 seqs=56 chrV:6880858-6880938 ( 73) CCCTTTTC 1 chrI:5176375-5176455 ( 12) CCCTTTTC 1 chrIV:4702392-4702472 ( 46) CCCTTTTC 1 chrV:1197599-1197679 ( 11) CCCTTTTC 1 chrI:2996338-2996418 ( 6) CCCTTTTC 1 chrIII:6551701-6551781 ( 44) CCCTTTTC 1 chrIV:12365438-12365518 ( 5) CCCTTTTC 1 chrI:1213609-1213689 ( 30) CCCTTCTC 1 chrIII:10811308-10811388 ( 47) CCCTTTTC 1 chrIII:10123784-10123864 ( 6) CCCTTTTC 1 chrI:10469282-10469362 ( 39) CCCTTTTC 1 chrV:16553090-16553170 ( 27) CCCTTTTC 1 chrV:1154014-1154094 ( 8) TCCTTCTC 1 chrV:11083822-11083902 ( 8) TCCTTCTC 1 chrI:6252923-6253003 ( 13) CCTTTCTC 1 chrV:8663206-8663286 ( 6) CTCTTCTC 1 chrX:13144406-13144486 ( 61) CCTTTCTC 1 chrI:5140286-5140366 ( 69) CTCTTCTC 1 chrI:13421186-13421266 ( 53) CTCTTTTC 1 chrIII:4947589-4947669 ( 1) CTCTTCTC 1 chrIII:6137565-6137645 ( 2) TTCTTTTC 1 chrII:14249527-14249607 ( 30) TCTTTCTC 1 chrX:4504261-4504341 ( 15) TCTTTCTC 1 chrIV:2048987-2049067 ( 14) TCTTTTTC 1 chrX:11467482-11467562 ( 17) TTCTTCTC 1 chrI:4941392-4941472 ( 16) CCCTCTTC 1 chrI:933469-933549 ( 40) TCTTTCTC 1 chrV:13396519-13396599 ( 8) CCCTCCTC 1 chrX:14640140-14640220 ( 46) CCCTCCTC 1 chrX:11034969-11035049 ( 19) CTTTTCTC 1 chrV:1943561-1943641 ( 26) CTTTTTTC 1 chrI:1823208-1823288 ( 24) CTTTTTTC 1 chrX:14859146-14859226 ( 13) CTTTTCTC 1 chrII:11889526-11889606 ( 44) TCCTCTTC 1 chrI:6151576-6151656 ( 8) TCCTCTTC 1 chrV:4647913-4647993 ( 21) TCCTCCTC 1 chrIV:16995576-16995656 ( 28) TCCTCTTC 1 chrIV:16498195-16498275 ( 1) TCCTCCTC 1 chrV:4435610-4435690 ( 15) TCCTCCTC 1 chrX:9999262-9999342 ( 62) CTCTCTTC 1 chrIII:4666975-4667055 ( 30) CCTTCTTC 1 chrII:6828429-6828509 ( 25) CTCTCCTC 1 chrX:2432609-2432689 ( 4) CTCTCCTC 1 chrIV:12621560-12621640 ( 54) TTTTTCTC 1 chrIV:4401765-4401845 ( 20) TTTTTCTC 1 chrII:1134621-1134701 ( 22) TTTTTCTC 1 chrX:14858048-14858128 ( 28) TTTTTTTC 1 chrX:5820095-5820175 ( 24) TTTTTTTC 1 chrI:10469078-10469158 ( 7) TTTTTCTC 1 chrIV:4702176-4702256 ( 26) TTTTTCTC 1 chrIV:12771694-12771774 ( 55) TCTTCTTC 1 chrII:15008717-15008797 ( 41) CTTTCCTC 1 chrX:13251717-13251797 ( 8) ACCTTTTC 1 chrIII:710151-710231 ( 15) ACCTTTTC 1 chrIV:3227755-3227835 ( 17) ACTTTTTC 1 chrV:10858554-10858634 ( 47) CCCTTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYYTTYTC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.56875 E= 4.9e-003 -222 119 -1245 60 -1245 137 -1245 53 -1245 137 -1245 53 -1245 -1245 -1245 194 -1245 15 -1245 149 -1245 99 -1245 99 -1245 -376 -1245 192 -1245 205 -1245 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYYTTYTC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 4.9e-003 0.053571 0.553571 0.000000 0.392857 0.000000 0.625000 0.000000 0.375000 0.000000 0.625000 0.000000 0.375000 0.000000 0.000000 0.000000 1.000000 0.000000 0.267857 0.000000 0.732143 0.000000 0.482143 0.000000 0.517857 0.000000 0.017857 0.000000 0.982143 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYYTTYTC MEME-1 regular expression -------------------------------------------------------------------------------- [CT][CT][CT]T[TC][TC]TC -------------------------------------------------------------------------------- Time 6.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GARRARRA MEME-2 width = 8 sites = 81 llr = 558 E-value = 1.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARRARRA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a65a466 pos.-specific C :::::::1 probability G a:45:543 matrix T :::::1:: bits 2.0 * 1.8 * * 1.6 ** * 1.4 ** * Relative 1.2 ** * Entropy 1.0 ***** * (9.9 bits) 0.8 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAGAGAA consensus GA AGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRARRA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:9646258-9646338 18 1.49e-05 CTGACGTGCC GAAGAGAA AGGATTCGCG chrI:14628154-14628234 31 1.49e-05 TAATCAGTTG GAagagaa gaaattgaga chrII:4955546-4955626 42 1.49e-05 CAGGGTTGCT GAAGAGAA CCTATGGAAA chrX:5541250-5541330 7 1.49e-05 GTTGCT GAAGAGAA GTAGTGTGCG chrX:5641539-5641619 47 1.49e-05 ACGAGCAGAC GAAGAGAA TGACCTTGCA chrX:5812129-5812209 53 2.99e-05 TTATCTCTCG GAAAAGAA TGAGGAGGCG chrIV:8016004-8016084 42 4.49e-05 GTATCTTCTA GAAGAAAA TTTCAAAAAT chrI:10235313-10235393 61 4.49e-05 GTGAGAGAGA GAAGAAAA AGAGAAGAAA chrV:1197399-1197479 45 4.49e-05 GTATCTTCTA GAAGAAAA TTTCAAAAAT chrII:1134621-1134701 30 4.49e-05 TATTTTTCTC GAAGAAAA CGATACAACG chrI:10469078-10469158 15 4.49e-05 TATTTTTCTC GAAGAAAA CGATACAACG chrIV:4702176-4702256 34 4.49e-05 TATTTTTCTC GAAGAAAA CGATACAACG chrV:8663206-8663286 73 6.01e-05 gaagaagaag gaaaaaaa chrII:475925-476005 39 6.01e-05 CTTAAAGTTT GAAAAAAA CGCAGAAAAT chrII:13278521-13278601 42 6.01e-05 GCGTGTAGGC GAAAAAAA AAGCGTGTAG chrX:13251717-13251797 35 1.05e-04 CAACTGTTGT GAAAAGGA GACCAGATGA chrV:4526960-4527040 39 1.05e-04 TTCCGAGAGA GAGGAGAA GATTCGGTGG chrIII:10811102-10811182 62 1.05e-04 GGGGAGATAC GAAAAGGA GATCTGGCAC chrIV:16382293-16382373 41 1.34e-04 CGGGTGGGGG GAAGAAGA TAAAAGGGTG chrIII:349641-349721 26 1.34e-04 GGGATGGTaa gaagaaga agaagtgtag chrI:8305547-8305627 68 1.34e-04 GGAGGGTTCT gaagaaga agaag chrX:7651330-7651410 72 1.34e-04 AGGCGGACGG GAGAAGAA G chrI:10642454-10642534 71 1.34e-04 GTAGAACTAC GAGAAGAA TA chrI:3740395-3740475 42 1.34e-04 GTGGGTGGTG GAGAAGAA GGAGCGTAGA chrX:5480235-5480315 52 1.34e-04 ATAAGAAGGC GAAGAAGA CGCAGTGGGA chrIV:10503922-10504002 68 1.64e-04 AGAAGGGAGG GAAAAAGA TGGAA chrIV:7948504-7948584 58 1.64e-04 GAGGCTACCG GAGGAAAA TTCGAAGTTT chrI:890885-890965 45 1.64e-04 GTGCCGCTCG GAAAAAGA GGCGGAGCGT chrX:14868497-14868577 42 1.64e-04 TGAATTACTT GAAAAAGA AAGCAAAAAT chrI:5377664-5377744 55 1.94e-04 AACCGCACAT GAAGAGAG TGAGGGACTC chrIII:5503366-5503446 37 1.94e-04 CTGGTGAAAT GAGAAAAA GTGTATGTGG chrII:5836447-5836527 40 1.94e-04 AACGATTTGT GAGAAAAA TTAGTTGTCT chrI:5176375-5176455 43 1.94e-04 TTTCTTGACA GAGAAAAA GTGTGCGCAT chrIII:8650408-8650488 57 1.94e-04 TGCCCGGCTG GAGAAAAA TGGGGGACTT chrIV:6648860-6648940 60 1.94e-04 AAGAATTGGA GAAGAGAG AGAGAGAGGG chrI:2089034-2089114 53 2.09e-04 TGTATTCAAT GAAAAGAG CACAACCACC chrIV:16498195-16498275 43 2.09e-04 ctGGCGGCGG GAAAagag agagagagag chrI:1070000-1070080 71 2.38e-04 GAAGATGGAG GAGGAGGA AG chrX:993103-993183 64 2.68e-04 ATGGGGAGTG GAGAAGGA GGCGAAGCT chrV:11082596-11082676 71 3.44e-04 CTCGTCTCTC GAGAAAGA AA chrI:7711799-7711879 45 3.44e-04 TAGTAAGCGa gagaaaga ggcacagaat chrIII:13293126-13293206 7 3.44e-04 TGATTA GAAgaggg ggtacgtttt chrI:853312-853392 45 3.44e-04 ACTGGACACA GAAAATAA AAAAAATAAA chrII:4590887-4590967 60 3.44e-04 CAAATTGCTT GAAAATAA AATTTAATTA chrI:1213609-1213689 8 3.44e-04 GATTTTC GAAAATAA TAATCTCGCA chrIV:1824170-1824250 72 3.73e-04 GGTTGGCAAG GAGGAGAG A chrIV:11524392-11524472 34 3.73e-04 CGAGGAAGGG GAGGAGAG AGGCCGATTT chrIV:12621560-12621640 13 3.73e-04 GGGGAGCAAC GAAAAGGG GAGCTGGCAC chrX:7254695-7254775 64 3.73e-04 AGGAGGAAAC GAGGAGAG GACACTGGG chrV:14443696-14443776 42 3.73e-04 GGGGAGATAC GAAAAGGG GAGCACCTTG chrIII:11848487-11848567 39 3.73e-04 CCCCACCACG GAAAAGGG ATCTGCGAGA chrII:7635415-7635495 68 3.73e-04 GGTTAAGGTG GAGGAGAG GGCGC chrIV:385242-385322 46 3.73e-04 GGGGAGCAAC GAAAAGGG GAGCTGGGCC chrIV:7387212-7387292 63 4.03e-04 GAAACAGAAA GAGAAGAG ACATACACAC chrV:13396519-13396599 67 4.03e-04 ACACAGAAGC GAAGAAGG GGACAC chrX:10637537-10637617 36 4.47e-04 TTTCTGAGTG GAAGAGAC GCAGAGTGCA chrIV:17108328-17108408 35 4.47e-04 CAGACACCAC GAAAAAGG GGATCTATGA chrI:1415932-1416012 21 4.47e-04 ATGCGACGCG GAAGAGAC GCCACGAACT chrV:6359474-6359554 30 4.47e-04 GTGTGTGCGT GAAGAGAC ACAGAGTTAC chrIII:8319224-8319304 37 4.92e-04 CGTGCAAGAC GAAGATGA CGCAGACAAT chrIV:8066695-8066775 70 5.38e-04 AGTGCGCAGA GAAAATGA GCG chrV:11083822-11083902 54 5.38e-04 CGATAGATGA GAGGATAA AGCACGTTGC chrII:6828429-6828509 66 5.82e-04 TTCGGTGAAG GAGAATAA GAAAACG chrI:10175391-10175471 69 6.41e-04 ACTGACGGGA GAGGAAGG ATGG chrX:9999262-9999342 32 7.01e-04 AGGGGTGTGA GAGGAGAC GGGAGAGTAG chrI:9474930-9475010 20 7.01e-04 AGACAAACCA GAAAATAG TATACAAATT chrII:11567554-11567634 62 7.01e-04 CGCGCCTCGG GAGGAGAC GGATATGACA chrIV:7235622-7235702 62 7.01e-04 CGCAGCCGTA GAGGAGAC CGCTTTGTAT chrX:14862252-14862332 72 7.01e-04 TGATAATGTG GAGAAAGG C chrIII:4948844-4948924 47 7.45e-04 CCATACTCCC GAGAAGAC GCGGTCTGAC chrI:1823208-1823288 13 7.89e-04 GACTGCCGCA GAGAATGA ATCCTTTTTT chrII:15026197-15026277 67 7.89e-04 AAATTTCAGC GAAAAAGC GACGAG chrIV:4465896-4465976 1 8.64e-04 . gaggatag gcgatgctaa chrX:5077954-5078034 63 9.09e-04 CGGGCGGCGC AAAGAGAA ACGAGAAACA chrI:4967613-4967693 48 9.09e-04 CTCGAAAGCT GAGAAGGC GCGCTCTATT chrX:13503949-13504029 38 9.98e-04 AGTCATGGCC AAAGAAAA GTGTAGAAGA chrI:13470421-13470501 64 1.03e-03 AGGGGGAAAT GAAGGGAA TTTCCCGTT chrIII:3499995-3500075 55 1.10e-03 GGCCCCACGG AAAGAGGA TCTGCGAAAA chrI:6151576-6151656 69 1.22e-03 TAACAACATA AAAGAAGA GGTG chrV:9980793-9980873 25 1.39e-03 AACAGCAATG GAAGGAGA CCCGAAGAAC chrX:11034969-11035049 56 1.58e-03 CTGAAGCCTA GAAAGGAG CAGATAGAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRARRA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:9646258-9646338 1.5e-05 17_[+2]_55 chrI:14628154-14628234 1.5e-05 30_[+2]_42 chrII:4955546-4955626 1.5e-05 41_[+2]_31 chrX:5541250-5541330 1.5e-05 6_[+2]_66 chrX:5641539-5641619 1.5e-05 46_[+2]_26 chrX:5812129-5812209 3e-05 52_[+2]_20 chrIV:8016004-8016084 4.5e-05 41_[+2]_31 chrI:10235313-10235393 4.5e-05 60_[+2]_12 chrV:1197399-1197479 4.5e-05 44_[+2]_28 chrII:1134621-1134701 4.5e-05 29_[+2]_43 chrI:10469078-10469158 4.5e-05 14_[+2]_58 chrIV:4702176-4702256 4.5e-05 33_[+2]_39 chrV:8663206-8663286 6e-05 72_[+2] chrII:475925-476005 6e-05 38_[+2]_34 chrII:13278521-13278601 6e-05 41_[+2]_31 chrX:13251717-13251797 0.0001 34_[+2]_38 chrV:4526960-4527040 0.0001 38_[+2]_34 chrIII:10811102-10811182 0.0001 61_[+2]_11 chrIV:16382293-16382373 0.00013 40_[+2]_32 chrIII:349641-349721 0.00013 25_[+2]_47 chrI:8305547-8305627 0.00013 67_[+2]_5 chrX:7651330-7651410 0.00013 71_[+2]_1 chrI:10642454-10642534 0.00013 70_[+2]_2 chrI:3740395-3740475 0.00013 41_[+2]_31 chrX:5480235-5480315 0.00013 51_[+2]_21 chrIV:10503922-10504002 0.00016 67_[+2]_5 chrIV:7948504-7948584 0.00016 57_[+2]_15 chrI:890885-890965 0.00016 44_[+2]_28 chrX:14868497-14868577 0.00016 41_[+2]_31 chrI:5377664-5377744 0.00019 54_[+2]_18 chrIII:5503366-5503446 0.00019 36_[+2]_36 chrII:5836447-5836527 0.00019 39_[+2]_33 chrI:5176375-5176455 0.00019 42_[+2]_30 chrIII:8650408-8650488 0.00019 56_[+2]_16 chrIV:6648860-6648940 0.00019 59_[+2]_13 chrI:2089034-2089114 0.00021 52_[+2]_20 chrIV:16498195-16498275 0.00021 42_[+2]_30 chrI:1070000-1070080 0.00024 70_[+2]_2 chrX:993103-993183 0.00027 63_[+2]_9 chrV:11082596-11082676 0.00034 70_[+2]_2 chrI:7711799-7711879 0.00034 44_[+2]_28 chrIII:13293126-13293206 0.00034 6_[+2]_66 chrI:853312-853392 0.00034 44_[+2]_28 chrII:4590887-4590967 0.00034 59_[+2]_13 chrI:1213609-1213689 0.00034 7_[+2]_65 chrIV:1824170-1824250 0.00037 71_[+2]_1 chrIV:11524392-11524472 0.00037 33_[+2]_39 chrIV:12621560-12621640 0.00037 12_[+2]_60 chrX:7254695-7254775 0.00037 63_[+2]_9 chrV:14443696-14443776 0.00037 41_[+2]_31 chrIII:11848487-11848567 0.00037 38_[+2]_34 chrII:7635415-7635495 0.00037 67_[+2]_5 chrIV:385242-385322 0.00037 45_[+2]_27 chrIV:7387212-7387292 0.0004 62_[+2]_10 chrV:13396519-13396599 0.0004 66_[+2]_6 chrX:10637537-10637617 0.00045 35_[+2]_37 chrIV:17108328-17108408 0.00045 34_[+2]_38 chrI:1415932-1416012 0.00045 20_[+2]_52 chrV:6359474-6359554 0.00045 29_[+2]_43 chrIII:8319224-8319304 0.00049 36_[+2]_36 chrIV:8066695-8066775 0.00054 69_[+2]_3 chrV:11083822-11083902 0.00054 53_[+2]_19 chrII:6828429-6828509 0.00058 65_[+2]_7 chrI:10175391-10175471 0.00064 68_[+2]_4 chrX:9999262-9999342 0.0007 31_[+2]_41 chrI:9474930-9475010 0.0007 19_[+2]_53 chrII:11567554-11567634 0.0007 61_[+2]_11 chrIV:7235622-7235702 0.0007 61_[+2]_11 chrX:14862252-14862332 0.0007 71_[+2]_1 chrIII:4948844-4948924 0.00074 46_[+2]_26 chrI:1823208-1823288 0.00079 12_[+2]_60 chrII:15026197-15026277 0.00079 66_[+2]_6 chrIV:4465896-4465976 0.00086 [+2]_72 chrX:5077954-5078034 0.00091 62_[+2]_10 chrI:4967613-4967693 0.00091 47_[+2]_25 chrX:13503949-13504029 0.001 37_[+2]_35 chrI:13470421-13470501 0.001 63_[+2]_9 chrIII:3499995-3500075 0.0011 54_[+2]_18 chrI:6151576-6151656 0.0012 68_[+2]_4 chrV:9980793-9980873 0.0014 24_[+2]_48 chrX:11034969-11035049 0.0016 55_[+2]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRARRA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARRARRA width=8 seqs=81 chrII:9646258-9646338 ( 18) GAAGAGAA 1 chrI:14628154-14628234 ( 31) GAAGAGAA 1 chrII:4955546-4955626 ( 42) GAAGAGAA 1 chrX:5541250-5541330 ( 7) GAAGAGAA 1 chrX:5641539-5641619 ( 47) GAAGAGAA 1 chrX:5812129-5812209 ( 53) GAAAAGAA 1 chrIV:8016004-8016084 ( 42) GAAGAAAA 1 chrI:10235313-10235393 ( 61) GAAGAAAA 1 chrV:1197399-1197479 ( 45) GAAGAAAA 1 chrII:1134621-1134701 ( 30) GAAGAAAA 1 chrI:10469078-10469158 ( 15) GAAGAAAA 1 chrIV:4702176-4702256 ( 34) GAAGAAAA 1 chrV:8663206-8663286 ( 73) GAAAAAAA 1 chrII:475925-476005 ( 39) GAAAAAAA 1 chrII:13278521-13278601 ( 42) GAAAAAAA 1 chrX:13251717-13251797 ( 35) GAAAAGGA 1 chrV:4526960-4527040 ( 39) GAGGAGAA 1 chrIII:10811102-10811182 ( 62) GAAAAGGA 1 chrIV:16382293-16382373 ( 41) GAAGAAGA 1 chrIII:349641-349721 ( 26) GAAGAAGA 1 chrI:8305547-8305627 ( 68) GAAGAAGA 1 chrX:7651330-7651410 ( 72) GAGAAGAA 1 chrI:10642454-10642534 ( 71) GAGAAGAA 1 chrI:3740395-3740475 ( 42) GAGAAGAA 1 chrX:5480235-5480315 ( 52) GAAGAAGA 1 chrIV:10503922-10504002 ( 68) GAAAAAGA 1 chrIV:7948504-7948584 ( 58) GAGGAAAA 1 chrI:890885-890965 ( 45) GAAAAAGA 1 chrX:14868497-14868577 ( 42) GAAAAAGA 1 chrI:5377664-5377744 ( 55) GAAGAGAG 1 chrIII:5503366-5503446 ( 37) GAGAAAAA 1 chrII:5836447-5836527 ( 40) GAGAAAAA 1 chrI:5176375-5176455 ( 43) GAGAAAAA 1 chrIII:8650408-8650488 ( 57) GAGAAAAA 1 chrIV:6648860-6648940 ( 60) GAAGAGAG 1 chrI:2089034-2089114 ( 53) GAAAAGAG 1 chrIV:16498195-16498275 ( 43) GAAAAGAG 1 chrI:1070000-1070080 ( 71) GAGGAGGA 1 chrX:993103-993183 ( 64) GAGAAGGA 1 chrV:11082596-11082676 ( 71) GAGAAAGA 1 chrI:7711799-7711879 ( 45) GAGAAAGA 1 chrIII:13293126-13293206 ( 7) GAAGAGGG 1 chrI:853312-853392 ( 45) GAAAATAA 1 chrII:4590887-4590967 ( 60) GAAAATAA 1 chrI:1213609-1213689 ( 8) GAAAATAA 1 chrIV:1824170-1824250 ( 72) GAGGAGAG 1 chrIV:11524392-11524472 ( 34) GAGGAGAG 1 chrIV:12621560-12621640 ( 13) GAAAAGGG 1 chrX:7254695-7254775 ( 64) GAGGAGAG 1 chrV:14443696-14443776 ( 42) GAAAAGGG 1 chrIII:11848487-11848567 ( 39) GAAAAGGG 1 chrII:7635415-7635495 ( 68) GAGGAGAG 1 chrIV:385242-385322 ( 46) GAAAAGGG 1 chrIV:7387212-7387292 ( 63) GAGAAGAG 1 chrV:13396519-13396599 ( 67) GAAGAAGG 1 chrX:10637537-10637617 ( 36) GAAGAGAC 1 chrIV:17108328-17108408 ( 35) GAAAAAGG 1 chrI:1415932-1416012 ( 21) GAAGAGAC 1 chrV:6359474-6359554 ( 30) GAAGAGAC 1 chrIII:8319224-8319304 ( 37) GAAGATGA 1 chrIV:8066695-8066775 ( 70) GAAAATGA 1 chrV:11083822-11083902 ( 54) GAGGATAA 1 chrII:6828429-6828509 ( 66) GAGAATAA 1 chrI:10175391-10175471 ( 69) GAGGAAGG 1 chrX:9999262-9999342 ( 32) GAGGAGAC 1 chrI:9474930-9475010 ( 20) GAAAATAG 1 chrII:11567554-11567634 ( 62) GAGGAGAC 1 chrIV:7235622-7235702 ( 62) GAGGAGAC 1 chrX:14862252-14862332 ( 72) GAGAAAGG 1 chrIII:4948844-4948924 ( 47) GAGAAGAC 1 chrI:1823208-1823288 ( 13) GAGAATGA 1 chrII:15026197-15026277 ( 67) GAAAAAGC 1 chrIV:4465896-4465976 ( 1) GAGGATAG 1 chrX:5077954-5078034 ( 63) AAAGAGAA 1 chrI:4967613-4967693 ( 48) GAGAAGGC 1 chrX:13503949-13504029 ( 38) AAAGAAAA 1 chrI:13470421-13470501 ( 64) GAAGGGAA 1 chrIII:3499995-3500075 ( 55) AAAGAGGA 1 chrI:6151576-6151656 ( 69) AAAGAAGA 1 chrV:9980793-9980873 ( 25) GAAGGAGA 1 chrX:11034969-11035049 ( 56) GAAAGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRARRA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.76687 E= 1.1e-003 -234 -1298 194 -1298 200 -1298 -1298 -1298 136 -1298 53 -1298 94 -1298 107 -1298 194 -1298 -274 -1298 61 -1298 100 -107 133 -1298 58 -1298 133 -112 7 -1298 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRARRA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 1.1e-003 0.049383 0.000000 0.950617 0.000000 1.000000 0.000000 0.000000 0.000000 0.641975 0.000000 0.358025 0.000000 0.481481 0.000000 0.518519 0.000000 0.962963 0.000000 0.037037 0.000000 0.382716 0.000000 0.493827 0.123457 0.629630 0.000000 0.370370 0.000000 0.629630 0.111111 0.259259 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRARRA MEME-2 regular expression -------------------------------------------------------------------------------- GA[AG][GA]A[GA][AG][AG] -------------------------------------------------------------------------------- Time 10.53 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGKCGCG MEME-3 width = 8 sites = 14 llr = 135 E-value = 7.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGKCGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :9::9:9: probability G a:a61a1a matrix T :1:4:::: bits 2.0 * * * * 1.8 * * * * 1.6 * * **** 1.4 *** **** Relative 1.2 *** **** Entropy 1.0 ******** (13.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGGCGCG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGKCGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:2996338-2996418 70 1.33e-05 GTTACTATTT GCGGCGCG AGT chrIV:2998877-2998957 10 1.33e-05 TAGTCATGG GCGGCGCG CGCGCGGCAA chrIII:13293126-13293206 70 1.33e-05 agggcaatgt gcggcgcg cct chrIII:510989-511069 49 1.33e-05 GTTTTGGAAC GCGGCGCG GCGATAGAGA chrIV:2891964-2892044 43 1.33e-05 TTCAAGTTGG GCGGCGCG GCCCAACAAG chrIV:8016004-8016084 13 2.72e-05 CCGATGTTAC GCGTCGCG TGTTGTTAAG chrV:1197399-1197479 16 2.72e-05 CCGATGTTAC GCGTCGCG TGTTGTTAAG chrII:1134621-1134701 63 2.72e-05 CCGATGTTAC GCGTCGCG TGTTGTTAAG chrI:10469078-10469158 48 2.72e-05 CCGATGTTAC GCGTCGCG TGTTGTTAAG chrIV:4702176-4702256 67 2.72e-05 CCGATGTTAC GCGTCGCG TGTTGT chrIV:7387212-7387292 18 4.15e-05 TGGATAGGCT GTGGCGCG GCACTCTCTC chrV:4526960-4527040 53 4.15e-05 AGAAGATTCG GTGGCGCG AGGAGGGAGA chrX:4504261-4504341 39 8.37e-05 TCTTTATTCC GCGGGGCG AGGACCGCGA chrIII:4947589-4947669 40 8.37e-05 ATGTTGTTGG GCGGCGGG CGGGAGGTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGKCGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:2996338-2996418 1.3e-05 69_[+3]_3 chrIV:2998877-2998957 1.3e-05 9_[+3]_63 chrIII:13293126-13293206 1.3e-05 69_[+3]_3 chrIII:510989-511069 1.3e-05 48_[+3]_24 chrIV:2891964-2892044 1.3e-05 42_[+3]_30 chrIV:8016004-8016084 2.7e-05 12_[+3]_60 chrV:1197399-1197479 2.7e-05 15_[+3]_57 chrII:1134621-1134701 2.7e-05 62_[+3]_10 chrI:10469078-10469158 2.7e-05 47_[+3]_25 chrIV:4702176-4702256 2.7e-05 66_[+3]_6 chrIV:7387212-7387292 4.2e-05 17_[+3]_55 chrV:4526960-4527040 4.2e-05 52_[+3]_20 chrX:4504261-4504341 8.4e-05 38_[+3]_34 chrIII:4947589-4947669 8.4e-05 39_[+3]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGKCGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGKCGCG width=8 seqs=14 chrI:2996338-2996418 ( 70) GCGGCGCG 1 chrIV:2998877-2998957 ( 10) GCGGCGCG 1 chrIII:13293126-13293206 ( 70) GCGGCGCG 1 chrIII:510989-511069 ( 49) GCGGCGCG 1 chrIV:2891964-2892044 ( 43) GCGGCGCG 1 chrIV:8016004-8016084 ( 13) GCGTCGCG 1 chrV:1197399-1197479 ( 16) GCGTCGCG 1 chrII:1134621-1134701 ( 63) GCGTCGCG 1 chrI:10469078-10469158 ( 48) GCGTCGCG 1 chrIV:4702176-4702256 ( 67) GCGTCGCG 1 chrIV:7387212-7387292 ( 18) GTGGCGCG 1 chrV:4526960-4527040 ( 53) GTGGCGCG 1 chrX:4504261-4504341 ( 39) GCGGGGCG 1 chrIII:4947589-4947669 ( 40) GCGGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGKCGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 7.6e+002 -1045 -1045 201 -1045 -1045 182 -1045 -86 -1045 -1045 201 -1045 -1045 -1045 138 46 -1045 194 -179 -1045 -1045 -1045 201 -1045 -1045 194 -179 -1045 -1045 -1045 201 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGKCGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 7.6e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.642857 0.357143 0.000000 0.928571 0.071429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGKCGCG MEME-3 regular expression -------------------------------------------------------------------------------- GCG[GT]CGCG -------------------------------------------------------------------------------- Time 15.53 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGGGCC MEME-4 width = 8 sites = 12 llr = 123 E-value = 2.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGGGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::2: pos.-specific C :2::::8a probability G a:aaaa:: matrix T :8:::::: bits 2.0 * **** * 1.8 * **** * 1.6 * **** * 1.4 * ****** Relative 1.2 ******** Entropy 1.0 ******** (14.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGGGGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:5176375-5176455 20 1.43e-05 TCCCCTTTTC GTGGGGCC TCGTTTTTCT chrIV:4702392-4702472 54 1.43e-05 TCCCCTTTTC GTGGGGCC tcttccaaca chrV:4647913-4647993 41 1.43e-05 ATTGGGGCTT GTGGGGCC TGAGCGTATC chrI:2996338-2996418 14 1.43e-05 TCCCCTTTTC GTGGGGCC TCAATAAATC chrI:890885-890965 14 1.43e-05 TCATCTTTTC GTGGGGCC TGCTTATTTT chrIII:10123784-10123864 14 1.43e-05 TCCCCTTTTC GTGGGGCC TCTGTTAATT chrI:10469282-10469362 47 1.43e-05 TCCCCTTTTC GTGGGGCC TCGCTCCGCC chrIII:3499995-3500075 17 1.43e-05 TCCCGCTTTC GTGGGGCC TCAAACCCGG chrV:9980994-9981074 49 2.76e-05 GGTTCTGTGG GCGGGGCC AATCCCCCGA chrIII:3175146-3175226 59 2.76e-05 TTGCAAATGG GCGGGGCC TAGCTTCAAT chrV:1197599-1197679 19 4.23e-05 TTCCCTTTTC GTGGGGAC TCATTTCTTT chrX:9102318-9102398 70 4.23e-05 GCGGGTGAGA GTGGGGAC AGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:5176375-5176455 1.4e-05 19_[+4]_53 chrIV:4702392-4702472 1.4e-05 53_[+4]_19 chrV:4647913-4647993 1.4e-05 40_[+4]_32 chrI:2996338-2996418 1.4e-05 13_[+4]_59 chrI:890885-890965 1.4e-05 13_[+4]_59 chrIII:10123784-10123864 1.4e-05 13_[+4]_59 chrI:10469282-10469362 1.4e-05 46_[+4]_26 chrIII:3499995-3500075 1.4e-05 16_[+4]_56 chrV:9980994-9981074 2.8e-05 48_[+4]_24 chrIII:3175146-3175226 2.8e-05 58_[+4]_14 chrV:1197599-1197679 4.2e-05 18_[+4]_54 chrX:9102318-9102398 4.2e-05 69_[+4]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGGGCC width=8 seqs=12 chrI:5176375-5176455 ( 20) GTGGGGCC 1 chrIV:4702392-4702472 ( 54) GTGGGGCC 1 chrV:4647913-4647993 ( 41) GTGGGGCC 1 chrI:2996338-2996418 ( 14) GTGGGGCC 1 chrI:890885-890965 ( 14) GTGGGGCC 1 chrIII:10123784-10123864 ( 14) GTGGGGCC 1 chrI:10469282-10469362 ( 47) GTGGGGCC 1 chrIII:3499995-3500075 ( 17) GTGGGGCC 1 chrV:9980994-9981074 ( 49) GCGGGGCC 1 chrIII:3175146-3175226 ( 59) GCGGGGCC 1 chrV:1197599-1197679 ( 19) GTGGGGAC 1 chrX:9102318-9102398 ( 70) GTGGGGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0174 E= 2.5e+001 -1023 -1023 201 -1023 -1023 -54 -1023 168 -1023 -1023 201 -1023 -1023 -1023 201 -1023 -1023 -1023 201 -1023 -1023 -1023 201 -1023 -59 178 -1023 -1023 -1023 205 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.5e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCC MEME-4 regular expression -------------------------------------------------------------------------------- GTGGGGCC -------------------------------------------------------------------------------- Time 19.03 secs. ******************************************************************************** ******************************************************************************** MOTIF CACAAAAC MEME-5 width = 8 sites = 11 llr = 110 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACAAAAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:a79a1 pos.-specific C a:a:3::9 probability G :::::1:: matrix T :::::::: bits 2.0 **** * 1.8 **** * 1.6 **** *** 1.4 **** *** Relative 1.2 ******** Entropy 1.0 ******** (14.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACAAAAC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAAAAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3694320-3694400 2 1.38e-05 A CACAAAAC CCCCCTACAT chrX:7234885-7234965 70 1.38e-05 CACATACGCA CACAAAAC ACA chrIV:7948504-7948584 31 1.38e-05 CTTCGGGTCT CACAAAAC TGAGAGACGG chrIV:12621560-12621640 42 1.38e-05 GTGGCAAACG CACAAAAC GCATTTTTTC chrIV:4401765-4401845 8 1.38e-05 CCAAACG CACAAAAC GCAATTTTTC chrIV:385242-385322 69 1.38e-05 GGGCCAAACG CACAAAAC GCTT chrX:9296745-9296825 62 2.72e-05 CACTATGCCG CACACAAC TGGGTGACAC chrX:5354648-5354728 33 2.72e-05 ccctcgccAA CACACAAC GCCGCATCTC chrI:5140286-5140366 50 2.72e-05 ATCCTTGGAG CACACAAC GGGGGGCTCA chrV:6359474-6359554 11 4.10e-05 TAGGGTGATC CACAAGAC TGTGTGTGCG chrII:6827433-6827513 61 5.53e-05 CGGTCAAATA CACAAAAA TGAACGCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAAAAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3694320-3694400 1.4e-05 1_[+5]_71 chrX:7234885-7234965 1.4e-05 69_[+5]_3 chrIV:7948504-7948584 1.4e-05 30_[+5]_42 chrIV:12621560-12621640 1.4e-05 41_[+5]_31 chrIV:4401765-4401845 1.4e-05 7_[+5]_65 chrIV:385242-385322 1.4e-05 68_[+5]_4 chrX:9296745-9296825 2.7e-05 61_[+5]_11 chrX:5354648-5354728 2.7e-05 32_[+5]_40 chrI:5140286-5140366 2.7e-05 49_[+5]_23 chrV:6359474-6359554 4.1e-05 10_[+5]_62 chrII:6827433-6827513 5.5e-05 60_[+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAAAAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACAAAAC width=8 seqs=11 chrX:3694320-3694400 ( 2) CACAAAAC 1 chrX:7234885-7234965 ( 70) CACAAAAC 1 chrIV:7948504-7948584 ( 31) CACAAAAC 1 chrIV:12621560-12621640 ( 42) CACAAAAC 1 chrIV:4401765-4401845 ( 8) CACAAAAC 1 chrIV:385242-385322 ( 69) CACAAAAC 1 chrX:9296745-9296825 ( 62) CACACAAC 1 chrX:5354648-5354728 ( 33) CACACAAC 1 chrI:5140286-5140366 ( 50) CACACAAC 1 chrV:6359474-6359554 ( 11) CACAAGAC 1 chrII:6827433-6827513 ( 61) CACAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAAAAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2475 E= 1.2e+004 -1010 205 -1010 -1010 200 -1010 -1010 -1010 -1010 205 -1010 -1010 200 -1010 -1010 -1010 154 17 -1010 -1010 186 -1010 -144 -1010 200 -1010 -1010 -1010 -146 191 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAAAAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.2e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.727273 0.272727 0.000000 0.000000 0.909091 0.000000 0.090909 0.000000 1.000000 0.000000 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAAAAC MEME-5 regular expression -------------------------------------------------------------------------------- CACA[AC]AAC -------------------------------------------------------------------------------- Time 22.50 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:4244051-4244131 4.79e-01 80 chrX:14862027-14862107 5.40e-01 80 chrV:18705844-18705924 2.66e-01 80 chrV:5284153-5284233 9.99e-01 80 chrIV:4245098-4245178 2.37e-01 80 chrM:13088-13168 9.43e-01 80 chrX:14868497-14868577 2.41e-01 80 chrV:5284716-5284796 9.99e-01 80 chrM:3923-4003 1.00e+00 80 chrIV:11071079-11071159 9.89e-01 80 chrM:10396-10476 8.74e-01 80 chrX:14859146-14859226 2.04e-01 80 chrV:16553090-16553170 2.38e-01 11_[+1(3.03e-05)]_7_[+1(3.03e-05)]_\ 37_[+1(3.03e-05)]_1 chrI:2487854-2487934 9.18e-01 80 chrIV:1687326-1687406 6.66e-01 80 chrIII:10857000-10857080 8.76e-01 80 chrIII:10811102-10811182 3.54e-01 80 chrIV:2891964-2892044 1.03e-02 42_[+3(1.33e-05)]_30 chrIV:4702176-4702256 2.23e-04 33_[+2(4.49e-05)]_25_[+3(2.72e-05)]_\ 6 chrV:18710172-18710252 9.32e-01 80 chrIV:6648860-6648940 4.51e-02 80 chrX:11474383-11474463 7.64e-01 80 chrIV:4241706-4241786 9.23e-01 80 chrIV:385242-385322 1.92e-03 68_[+5(1.38e-05)]_4 chrI:10469078-10469158 2.23e-04 14_[+2(4.49e-05)]_25_[+3(2.72e-05)]_\ 25 chrII:7635415-7635495 2.23e-03 80 chrV:4435610-4435690 1.59e-01 80 chrIII:3499995-3500075 4.27e-03 16_[+4(1.43e-05)]_56 chrX:9102318-9102398 3.05e-03 69_[+4(4.23e-05)]_3 chrI:6175246-6175326 5.94e-01 80 chrI:10462713-10462793 9.11e-01 80 chrII:13278521-13278601 1.11e-01 41_[+2(6.01e-05)]_31 chrIV:9563908-9563988 8.60e-01 80 chrM:6409-6489 1.00e+00 80 chrV:12510066-12510146 1.00e+00 80 chrX:5820095-5820175 4.58e-02 80 chrIII:4947589-4947669 1.31e-02 39_[+3(8.37e-05)]_33 chrV:6222345-6222425 4.36e-01 80 chrX:14858048-14858128 4.70e-01 80 chrI:10469282-10469362 9.49e-04 21_[+1(3.03e-05)]_9_[+1(3.03e-05)]_\ [+4(1.43e-05)]_26 chrI:13421186-13421266 3.01e-01 80 chrIII:10123784-10123864 4.54e-04 5_[+1(3.03e-05)]_[+4(1.43e-05)]_59 chrX:14640140-14640220 5.51e-01 80 chrIII:3620751-3620831 2.06e-01 80 chrM:7409-7489 9.45e-01 80 chrI:7383203-7383283 5.76e-01 80 chrV:13396519-13396599 1.54e-02 80 chrV:7977926-7978006 3.60e-02 57_[+5(9.66e-05)]_15 chrI:933469-933549 4.86e-01 80 chrIII:4948844-4948924 1.74e-01 80 chrII:1134621-1134701 2.23e-04 29_[+2(4.49e-05)]_25_[+3(2.72e-05)]_\ 10 chrI:4941392-4941472 3.23e-01 80 chrX:5480235-5480315 1.27e-01 80 chrIII:510989-511069 2.64e-02 48_[+3(1.33e-05)]_24 chrIII:11848487-11848567 1.67e-01 80 chrX:4222646-4222726 5.96e-01 80 chrIV:3227755-3227835 3.64e-01 80 chrIV:4401765-4401845 3.10e-03 7_[+5(1.38e-05)]_65 chrI:890885-890965 4.91e-05 13_[+4(1.43e-05)]_59 chrV:14443696-14443776 4.38e-01 80 chrI:11589097-11589177 8.64e-01 80 chrV:11083822-11083902 1.40e-02 7_[+1(6.28e-05)]_65 chrII:10136776-10136856 2.90e-01 80 chrIV:14496568-14496648 9.20e-01 80 chrX:8156112-8156192 7.94e-02 80 chrV:14689666-14689746 9.44e-01 80 chrX:14862252-14862332 2.49e-01 80 chrV:1575887-1575967 6.95e-01 80 chrIII:10811308-10811388 1.87e-01 31_[+1(3.03e-05)]_7_[+1(3.03e-05)]_\ 7_[+1(3.03e-05)]_11 chrII:158476-158556 4.76e-01 80 chrI:6284982-6285062 8.88e-01 80 chrM:9104-9184 7.05e-01 80 chrX:13503949-13504029 3.91e-01 80 chrI:1213609-1213689 2.76e-02 29_[+1(3.03e-05)]_43 chrV:1197399-1197479 1.98e-03 15_[+3(2.72e-05)]_21_[+2(4.49e-05)]_\ 28 chrI:8134102-8134182 9.96e-01 80 chrV:8050199-8050279 4.63e-01 80 chrIV:16498195-16498275 2.17e-03 35_[+3(8.37e-05)]_37 chrIV:7235622-7235702 1.48e-01 80 chrV:6359474-6359554 3.22e-02 10_[+5(4.10e-05)]_62 chrIV:4465896-4465976 3.31e-01 80 chrX:11473299-11473379 9.16e-01 80 chrV:7746004-7746084 1.05e-01 80 chrV:10294103-10294183 9.40e-01 80 chrII:11537268-11537348 9.43e-01 80 chrX:7254695-7254775 2.18e-01 80 chrIV:11594392-11594472 5.82e-01 80 chrII:475925-476005 8.98e-02 38_[+2(6.01e-05)]_34 chrII:11567554-11567634 2.59e-01 80 chrII:6741601-6741681 4.27e-01 80 chrI:2089034-2089114 1.04e-01 80 chrIII:1219706-1219786 4.74e-01 80 chrIII:5769899-5769979 5.52e-01 80 chrI:8970129-8970209 1.32e-01 80 chrII:4590887-4590967 2.92e-01 80 chrI:11221350-11221430 9.30e-02 38_[+4(8.34e-05)]_34 chrX:5641539-5641619 5.67e-02 46_[+2(1.49e-05)]_26 chrI:2254064-2254144 9.40e-01 80 chrI:12571798-12571878 5.38e-01 80 chrIV:12365438-12365518 2.02e-01 4_[+1(3.03e-05)]_68 chrII:14469246-14469326 2.57e-01 80 chrII:14635340-14635420 5.16e-01 80 chrI:1415932-1416012 4.52e-02 80 chrIV:12621560-12621640 9.70e-04 41_[+5(1.38e-05)]_31 chrX:11467482-11467562 9.34e-03 80 chrV:3587857-3587937 6.94e-01 80 chrII:6827433-6827513 2.42e-02 60_[+5(5.53e-05)]_12 chrIV:4241949-4242029 8.11e-01 80 chrI:853312-853392 6.92e-02 80 chrII:2736987-2737067 8.40e-01 80 chrX:2432609-2432689 2.47e-01 80 chrV:4526960-4527040 5.15e-03 52_[+3(4.15e-05)]_20 chrX:3826294-3826374 1.16e-01 80 chrIV:16995576-16995656 2.23e-01 80 chrII:6828429-6828509 3.60e-02 80 chrX:5541250-5541330 4.74e-02 6_[+2(1.49e-05)]_66 chrX:16811743-16811823 4.65e-01 80 chrI:5140286-5140366 1.15e-03 49_[+5(2.72e-05)]_23 chrIII:13293126-13293206 8.68e-04 69_[+3(1.33e-05)]_3 chrI:9474930-9475010 2.82e-01 80 chrIII:6551701-6551781 2.25e-01 28_[+1(3.03e-05)]_7_[+1(3.03e-05)]_\ 29 chrII:15026197-15026277 3.83e-01 80 chrI:913069-913149 7.47e-01 80 chrI:13470421-13470501 8.07e-02 80 chrX:13144406-13144486 6.98e-02 80 chrV:447250-447330 2.83e-01 80 chrV:12167221-12167301 8.78e-01 80 chrX:14491284-14491364 1.14e-01 80 chrII:12042295-12042375 9.74e-01 80 chrV:1154014-1154094 3.45e-02 7_[+1(6.28e-05)]_65 chrIV:11524392-11524472 2.62e-01 80 chrIII:6537344-6537424 2.69e-01 80 chrIV:17108328-17108408 1.85e-01 80 chrII:13195418-13195498 6.97e-01 80 chrIII:3801794-3801874 7.47e-01 80 chrIV:2998877-2998957 6.54e-03 9_[+3(1.33e-05)]_63 chrI:2996338-2996418 9.51e-06 5_[+1(3.03e-05)]_[+4(1.43e-05)]_48_\ [+3(1.33e-05)]_3 chrIV:8066695-8066775 5.85e-01 80 chrIII:4666975-4667055 4.57e-01 80 chrI:4175950-4176030 9.76e-01 80 chrV:8663206-8663286 6.78e-03 72_[+2(6.01e-05)] chrIII:710151-710231 2.13e-02 80 chrI:10175391-10175471 1.75e-01 80 chrX:8969680-8969760 6.40e-01 80 chrV:4647913-4647993 6.80e-04 40_[+4(1.43e-05)]_32 chrX:5064117-5064197 7.22e-02 80 chrV:12353598-12353678 8.98e-01 80 chrIV:2033169-2033249 6.72e-01 80 chrIV:1981147-1981227 3.34e-01 80 chrV:1197599-1197679 2.61e-04 10_[+1(3.03e-05)]_[+4(4.23e-05)]_54 chrX:5816509-5816589 1.67e-01 80 chrI:3740395-3740475 3.35e-02 80 chrIV:11310833-11310913 6.56e-01 80 chrI:1823208-1823288 1.39e-02 80 chrIV:7948504-7948584 5.32e-03 30_[+5(1.38e-05)]_42 chrI:10642454-10642534 3.15e-01 80 chrII:4955546-4955626 1.60e-03 41_[+2(1.49e-05)]_31 chrII:6491987-6492067 8.44e-01 80 chrX:13730803-13730883 3.61e-01 80 chrV:9980793-9980873 1.67e-01 80 chrX:9999262-9999342 5.05e-02 80 chrV:12039975-12040055 9.86e-01 80 chrX:5336738-5336818 3.70e-01 80 chrII:15008717-15008797 2.88e-02 68_[+5(6.86e-05)]_4 chrIV:7654550-7654630 1.79e-01 80 chrV:6354462-6354542 8.65e-01 80 chrI:2821408-2821488 9.40e-01 80 chrM:1102-1182 9.20e-01 80 chrIII:3175146-3175226 5.04e-02 58_[+4(2.76e-05)]_14 chrV:11029485-11029565 2.84e-01 80 chrII:7708752-7708832 5.97e-01 80 chrIV:2048987-2049067 1.20e-01 80 chrI:4967613-4967693 8.17e-02 80 chrIV:7387212-7387292 6.75e-03 17_[+3(4.15e-05)]_55 chrV:11504879-11504959 3.89e-01 80 chrI:7711799-7711879 1.80e-01 80 chrI:6151576-6151656 6.16e-02 80 chrIII:6805596-6805676 7.54e-01 80 chrX:5984787-5984867 8.87e-01 80 chrI:10235313-10235393 2.99e-02 60_[+2(4.49e-05)]_12 chrV:10858554-10858634 2.33e-01 80 chrI:14628154-14628234 1.12e-01 30_[+2(1.49e-05)]_42 chrI:7936057-7936137 6.98e-01 80 chrX:7234885-7234965 3.95e-03 69_[+5(1.38e-05)]_3 chrIII:3664372-3664452 1.23e-01 80 chrIV:12010577-12010657 2.20e-01 80 chrIII:8650408-8650488 1.15e-01 80 chrIII:12178156-12178236 8.32e-02 80 chrX:4504261-4504341 5.91e-03 38_[+3(8.37e-05)]_34 chrIII:3476373-3476453 6.07e-01 80 chrIV:12771694-12771774 1.76e-01 80 chrII:11889526-11889606 6.24e-01 80 chrII:7001571-7001651 1.82e-01 80 chrM:12516-12596 9.17e-01 80 chrX:993103-993183 3.55e-02 80 chrII:14249527-14249607 3.04e-01 80 chrI:1271136-1271216 6.44e-02 80 chrIV:4702392-4702472 2.51e-04 28_[+1(3.03e-05)]_9_[+1(3.03e-05)]_\ [+4(1.43e-05)]_19 chrX:5354648-5354728 8.98e-02 32_[+5(2.72e-05)]_40 chrX:7651330-7651410 8.59e-02 80 chrIV:7486390-7486470 9.59e-01 80 chrV:53473-53553 9.47e-01 80 chrII:6383314-6383394 6.33e-01 80 chrV:13789569-13789649 3.91e-01 80 chrI:1251670-1251750 7.74e-02 57_[+3(8.37e-05)]_15 chrIII:5603641-5603721 2.10e-01 80 chrX:5077954-5078034 1.28e-01 80 chrII:9646258-9646338 7.40e-02 17_[+2(1.49e-05)]_55 chrX:16928291-16928371 2.11e-01 80 chrI:5176375-5176455 2.03e-05 11_[+1(3.03e-05)]_[+4(1.43e-05)]_53 chrI:8305547-8305627 6.59e-02 80 chrV:1943561-1943641 2.51e-02 80 chrI:6252923-6253003 2.53e-02 80 chrII:14408034-14408114 3.33e-01 80 chrII:11724771-11724851 8.27e-01 80 chrI:3176579-3176659 1.38e-01 80 chrIV:7818204-7818284 8.71e-01 80 chrX:5818367-5818447 6.38e-01 80 chrII:5836447-5836527 5.91e-02 80 chrIII:349641-349721 1.42e-02 80 chrV:11082596-11082676 7.67e-02 80 chrI:1070000-1070080 4.68e-02 80 chrIV:8016004-8016084 1.98e-03 12_[+3(2.72e-05)]_21_[+2(4.49e-05)]_\ 31 chrX:9296745-9296825 3.27e-02 61_[+5(2.72e-05)]_11 chrI:14606025-14606105 3.28e-01 80 chrX:12890279-12890359 6.94e-01 80 chrX:11034969-11035049 8.54e-02 80 chrIII:8865485-8865565 4.58e-02 80 chrIII:7659600-7659680 8.72e-01 80 chrIII:11091902-11091982 8.20e-01 80 chrIII:5503366-5503446 1.38e-01 80 chrX:10637537-10637617 3.53e-01 80 chrI:5377664-5377744 3.10e-02 80 chrI:14721585-14721665 1.14e-01 80 chrII:11959417-11959497 5.97e-01 80 chrIII:6137565-6137645 8.38e-03 80 chrIII:8319224-8319304 3.22e-02 80 chrX:5812129-5812209 1.60e-02 52_[+2(2.99e-05)]_20 chrX:13251717-13251797 2.30e-02 80 chrIV:10503922-10504002 1.51e-02 80 chrIV:16382293-16382373 1.71e-02 80 chrIII:9104263-9104343 6.21e-01 80 chrV:9980994-9981074 5.02e-02 48_[+4(2.76e-05)]_24 chrIV:16776149-16776229 8.90e-01 80 chrV:7465644-7465724 2.55e-01 80 chrIV:11857412-11857492 2.30e-01 80 chrIV:1824170-1824250 7.09e-02 80 chrX:3694320-3694400 8.47e-02 1_[+5(1.38e-05)]_71 chrV:6880858-6880938 1.12e-01 72_[+1(3.03e-05)] chrII:14528366-14528446 7.12e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************