******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/die-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:13419147-13419227 1.0000 80 chrV:17687548-17687628 1.0000 80 chrX:13293160-13293240 1.0000 80 chrX:15241376-15241456 1.0000 80 chrV:17542497-17542577 1.0000 80 chrV:15480686-15480766 1.0000 80 chrX:13443423-13443503 1.0000 80 chrX:7507318-7507398 1.0000 80 chrII:12362419-12362499 1.0000 80 chrX:13782246-13782326 1.0000 80 chrI:946079-946159 1.0000 80 chrX:4410674-4410754 1.0000 80 chrX:8037542-8037622 1.0000 80 chrX:13284763-13284843 1.0000 80 chrIII:1744634-1744714 1.0000 80 chrV:8495292-8495372 1.0000 80 chrX:14211330-14211410 1.0000 80 chrX:16217894-16217974 1.0000 80 chrX:12854857-12854937 1.0000 80 chrV:5588079-5588159 1.0000 80 chrIV:7499503-7499583 1.0000 80 chrI:754677-754757 1.0000 80 chrIII:2304250-2304330 1.0000 80 chrX:12942430-12942510 1.0000 80 chrX:8149111-8149191 1.0000 80 chrIV:4885519-4885599 1.0000 80 chrI:11910261-11910341 1.0000 80 chrIII:1163337-1163417 1.0000 80 chrX:5709343-5709423 1.0000 80 chrX:4607456-4607536 1.0000 80 chrX:8846563-8846643 1.0000 80 chrIII:2711689-2711769 1.0000 80 chrII:4565353-4565433 1.0000 80 chrV:8499619-8499699 1.0000 80 chrX:8877306-8877386 1.0000 80 chrIII:1603933-1604013 1.0000 80 chrX:13444429-13444509 1.0000 80 chrIII:8473486-8473566 1.0000 80 chrX:1208070-1208150 1.0000 80 chrIV:7344179-7344259 1.0000 80 chrIII:2031332-2031412 1.0000 80 chrV:16645662-16645742 1.0000 80 chrX:15751385-15751465 1.0000 80 chrX:8945146-8945226 1.0000 80 chrX:15242884-15242964 1.0000 80 chrX:487819-487899 1.0000 80 chrX:13261231-13261311 1.0000 80 chrX:12937656-12937736 1.0000 80 chrII:11125322-11125402 1.0000 80 chrIII:8069377-8069457 1.0000 80 chrII:12435537-12435617 1.0000 80 chrX:2526243-2526323 1.0000 80 chrII:769433-769513 1.0000 80 chrIV:10311225-10311305 1.0000 80 chrV:20350559-20350639 1.0000 80 chrV:16648773-16648853 1.0000 80 chrX:1675239-1675319 1.0000 80 chrV:16640586-16640666 1.0000 80 chrX:14679132-14679212 1.0000 80 chrX:7378739-7378819 1.0000 80 chrIV:2664941-2665021 1.0000 80 chrIII:1164820-1164900 1.0000 80 chrX:13729836-13729916 1.0000 80 chrIII:13463729-13463809 1.0000 80 chrX:16299331-16299411 1.0000 80 chrX:16042608-16042688 1.0000 80 chrX:4409731-4409811 1.0000 80 chrX:16503163-16503243 1.0000 80 chrX:16590324-16590404 1.0000 80 chrX:5485676-5485756 1.0000 80 chrI:12601758-12601838 1.0000 80 chrIII:1599068-1599148 1.0000 80 chrII:2735753-2735833 1.0000 80 chrI:11977217-11977297 1.0000 80 chrV:7548724-7548804 1.0000 80 chrX:10731958-10732038 1.0000 80 chrIV:13870235-13870315 1.0000 80 chrV:3163286-3163366 1.0000 80 chrX:15146545-15146625 1.0000 80 chrX:13655973-13656053 1.0000 80 chrIII:11554814-11554894 1.0000 80 chrX:8838363-8838443 1.0000 80 chrIII:8646243-8646323 1.0000 80 chrV:16745055-16745135 1.0000 80 chrX:11933693-11933773 1.0000 80 chrI:7238791-7238871 1.0000 80 chrX:7680994-7681074 1.0000 80 chrX:4453253-4453333 1.0000 80 chrIII:11836260-11836340 1.0000 80 chrV:8247456-8247536 1.0000 80 chrX:7176954-7177034 1.0000 80 chrIV:17279705-17279785 1.0000 80 chrIV:7559317-7559397 1.0000 80 chrIII:2030971-2031051 1.0000 80 chrIII:10810801-10810881 1.0000 80 chrIV:8289201-8289281 1.0000 80 chrX:8819979-8820059 1.0000 80 chrX:16441106-16441186 1.0000 80 chrIV:7960856-7960936 1.0000 80 chrIII:3112164-3112244 1.0000 80 chrIII:13224559-13224639 1.0000 80 chrI:5804750-5804830 1.0000 80 chrX:8417896-8417976 1.0000 80 chrX:10124525-10124605 1.0000 80 chrI:6855500-6855580 1.0000 80 chrX:13717216-13717296 1.0000 80 chrX:8381814-8381894 1.0000 80 chrIII:13411347-13411427 1.0000 80 chrIV:13077931-13078011 1.0000 80 chrM:8780-8860 1.0000 80 chrX:10667595-10667675 1.0000 80 chrII:8631933-8632013 1.0000 80 chrIII:5705425-5705505 1.0000 80 chrIV:15793405-15793485 1.0000 80 chrIV:8513954-8514034 1.0000 80 chrIV:7488588-7488668 1.0000 80 chrII:11972422-11972502 1.0000 80 chrII:11916867-11916947 1.0000 80 chrV:15156668-15156748 1.0000 80 chrIII:2032870-2032950 1.0000 80 chrI:13324203-13324283 1.0000 80 chrV:14991734-14991814 1.0000 80 chrV:18412474-18412554 1.0000 80 chrIV:2664196-2664276 1.0000 80 chrIV:4864621-4864701 1.0000 80 chrIII:8725097-8725177 1.0000 80 chrIII:7495746-7495826 1.0000 80 chrX:7898362-7898442 1.0000 80 chrIV:1514588-1514668 1.0000 80 chrV:14412090-14412170 1.0000 80 chrX:8640838-8640918 1.0000 80 chrV:8496139-8496219 1.0000 80 chrII:9713255-9713335 1.0000 80 chrX:11993511-11993591 1.0000 80 chrI:11803378-11803458 1.0000 80 chrV:3686075-3686155 1.0000 80 chrV:9407075-9407155 1.0000 80 chrII:12672387-12672467 1.0000 80 chrIV:7275270-7275350 1.0000 80 chrX:15773443-15773523 1.0000 80 chrX:8419455-8419535 1.0000 80 chrIII:1743282-1743362 1.0000 80 chrII:2861595-2861675 1.0000 80 chrIII:3426874-3426954 1.0000 80 chrIV:9781144-9781224 1.0000 80 chrI:6051183-6051263 1.0000 80 chrII:5056355-5056435 1.0000 80 chrX:9237797-9237877 1.0000 80 chrX:11163326-11163406 1.0000 80 chrX:8939524-8939604 1.0000 80 chrX:10148676-10148756 1.0000 80 chrI:6464151-6464231 1.0000 80 chrX:13283621-13283701 1.0000 80 chrI:14758872-14758952 1.0000 80 chrIV:13701594-13701674 1.0000 80 chrX:9090742-9090822 1.0000 80 chrIV:2657478-2657558 1.0000 80 chrV:3455323-3455403 1.0000 80 chrIII:5446570-5446650 1.0000 80 chrII:8577588-8577668 1.0000 80 chrIV:12005520-12005600 1.0000 80 chrI:10085755-10085835 1.0000 80 chrIV:2327500-2327580 1.0000 80 chrIV:16775127-16775207 1.0000 80 chrX:8154647-8154727 1.0000 80 chrV:14231386-14231466 1.0000 80 chrIII:1354698-1354778 1.0000 80 chrX:14228930-14229010 1.0000 80 chrV:726407-726487 1.0000 80 chrIV:15476511-15476591 1.0000 80 chrII:12542699-12542779 1.0000 80 chrX:9238833-9238913 1.0000 80 chrI:7279379-7279459 1.0000 80 chrX:13307987-13308067 1.0000 80 chrI:4790690-4790770 1.0000 80 chrX:16300556-16300636 1.0000 80 chrII:2860307-2860387 1.0000 80 chrI:11977953-11978033 1.0000 80 chrIII:5229375-5229455 1.0000 80 chrX:7906587-7906667 1.0000 80 chrX:13714820-13714900 1.0000 80 chrV:8230251-8230331 1.0000 80 chrIII:12496597-12496677 1.0000 80 chrIV:13355933-13356013 1.0000 80 chrIV:8500046-8500126 1.0000 80 chrI:5985127-5985207 1.0000 80 chrV:16225638-16225718 1.0000 80 chrIV:5344333-5344413 1.0000 80 chrIII:8639291-8639371 1.0000 80 chrII:13521399-13521479 1.0000 80 chrX:16618253-16618333 1.0000 80 chrV:6551842-6551922 1.0000 80 chrI:5571798-5571878 1.0000 80 chrI:5985337-5985417 1.0000 80 chrIV:13882696-13882776 1.0000 80 chrX:8944283-8944363 1.0000 80 chrIII:11824705-11824785 1.0000 80 chrIII:698983-699063 1.0000 80 chrV:3582220-3582300 1.0000 80 chrX:8152738-8152818 1.0000 80 chrIII:12875801-12875881 1.0000 80 chrIV:4930918-4930998 1.0000 80 chrX:9561148-9561228 1.0000 80 chrIV:4347687-4347767 1.0000 80 chrX:6867111-6867191 1.0000 80 chrV:13175796-13175876 1.0000 80 chrM:5226-5306 1.0000 80 chrV:15515540-15515620 1.0000 80 chrX:8156694-8156774 1.0000 80 chrIII:9782155-9782235 1.0000 80 chrIV:11377550-11377630 1.0000 80 chrIII:9615248-9615328 1.0000 80 chrIV:4468887-4468967 1.0000 80 chrII:7049660-7049740 1.0000 80 chrIII:8653689-8653769 1.0000 80 chrII:10098489-10098569 1.0000 80 chrV:6559722-6559802 1.0000 80 chrI:5123982-5124062 1.0000 80 chrX:2893076-2893156 1.0000 80 chrIV:7961813-7961893 1.0000 80 chrV:15547908-15547988 1.0000 80 chrV:15454479-15454559 1.0000 80 chrIII:4015789-4015869 1.0000 80 chrX:5451224-5451304 1.0000 80 chrI:9774041-9774121 1.0000 80 chrIV:14658218-14658298 1.0000 80 chrV:16919785-16919865 1.0000 80 chrX:16619298-16619378 1.0000 80 chrV:6335391-6335471 1.0000 80 chrM:1831-1911 1.0000 80 chrX:1491195-1491275 1.0000 80 chrI:10436899-10436979 1.0000 80 chrV:16027503-16027583 1.0000 80 chrV:15479999-15480079 1.0000 80 chrII:3267937-3268017 1.0000 80 chrIV:15933263-15933343 1.0000 80 chrI:3159054-3159134 1.0000 80 chrV:5719694-5719774 1.0000 80 chrX:13435926-13436006 1.0000 80 chrII:6491292-6491372 1.0000 80 chrX:9024434-9024514 1.0000 80 chrV:8012133-8012213 1.0000 80 chrX:10666982-10667062 1.0000 80 chrX:16690028-16690108 1.0000 80 chrX:14162152-14162232 1.0000 80 chrIII:6374203-6374283 1.0000 80 chrI:6135766-6135846 1.0000 80 chrV:4632995-4633075 1.0000 80 chrX:8955849-8955929 1.0000 80 chrII:10304788-10304868 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_die-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/die-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.276 C 0.228 G 0.231 T 0.265 Background letter frequencies (from file dataset with add-one prior applied): A 0.276 C 0.228 G 0.231 T 0.265 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGRTTCGA MEME-1 width = 8 sites = 69 llr = 532 E-value = 3.3e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:52::1a pos.-specific C :1:1:9:: probability G 9951::9: matrix T 1::6a1:: bits 2.1 1.9 * 1.7 * **** 1.5 ** **** Relative 1.3 ** **** Entropy 1.1 ** **** (11.1 bits) 0.9 ** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGTTCGA consensus AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7906587-7906667 47 1.26e-05 CATAAGGCCG GGGTTCGA TTCCCCGCAA chrIV:15793405-15793485 60 1.26e-05 TGGTTGTCGC GGGTTCGA GCCCCGCATT chrII:8631933-8632013 35 1.26e-05 AGCACGAGTG GGGTTCGA ACCCACGCGG chrX:10667595-10667675 47 1.26e-05 CACGCGGCCC GGGTTCGA TTCCCGGCAT chrX:13717216-13717296 29 1.26e-05 TGGTTGTCGC GGGTTCGA GCCCCGCATT chrX:16042608-16042688 11 1.26e-05 GCTGCGAGCA GGGTTCGA ACCTACGCGG chrIII:8473486-8473566 37 1.26e-05 TGGTTGTCGC GGGTTCGA GCCCCGCATT chrV:8495292-8495372 60 1.26e-05 TTAAGGTCAG GGGTTCGA GTCCCCTAGG chrX:8037542-8037622 14 1.26e-05 AAGAGATCCC GGGTTCGA TCCCCGGTTC chrX:4410674-4410754 27 1.26e-05 CATAAGGCCG GGGTTCGA TTCCCCGCAA chrX:13782246-13782326 53 1.26e-05 TGGTTGTCGC GGGTTCGA GCCCCGCATT chrI:5985127-5985207 19 2.76e-05 CACAAGGATA GGATTCGA TCGTGAATTT chrX:11163326-11163406 43 2.76e-05 GAAGAGAGTG GGATTCGA ACCCACGCCC chrX:8417896-8417976 27 2.76e-05 GAAGAGAGTG GGATTCGA ACCCACGCCC chrX:10731958-10732038 42 2.76e-05 GACCACGGCA GGATTCGA ACCTACAATC chrII:2735753-2735833 52 2.76e-05 GAAGAGAGTG GGATTCGA ACCCACGCCC chrX:13284763-13284843 14 2.76e-05 CCGTCCAACC GGATTCGA ACCAGTGACC chrIII:2031332-2031412 2 4.07e-05 C GGGATCGA ACCCGTGGGC chrIII:2304250-2304330 28 4.07e-05 GACCTCTGCG GGGATCGA ACCCTGTACA chrX:10666982-10667062 51 5.64e-05 TCCCATGCCG GGAATCGA ACCCGGGCCG chrX:13283621-13283701 27 5.64e-05 GCCTCATGCT GGAATCGA ACCAGCGACC chrX:11993511-11993591 21 5.64e-05 GCCTGCGGCT GGAATCGA ACCAGCGTCG chrIII:2032870-2032950 38 5.64e-05 TCCGTTGCGG GGAATCGA ACCCCGGCCT chrX:7176954-7177034 40 5.64e-05 GCCTCATGCT GGAATCGA ACCAGCGACC chrX:4607456-4607536 8 5.64e-05 gatcgaa ggaatcga accatggtct chrX:15146545-15146625 28 6.73e-05 GACCCAGGCA GGGGTCGA ACCTGCAATC chrIII:1163337-1163417 28 6.73e-05 GCCGCCAGCA GGGGTCGA ACCTGCGACC chrIV:5344333-5344413 5 8.05e-05 ATCT GGAGTCGA ACGCGCTACC chrX:14228930-14229010 28 8.05e-05 CTTTCGATCT GGAGTCGA ACGCGCTACC chrX:8945146-8945226 52 8.05e-05 CTTTCGATCT GGAGTCGA ACGCGCTACC chrIV:7344179-7344259 15 8.05e-05 CTTTCGATCT GGAGTCGA ACGCGCTACC chrI:946079-946159 3 8.05e-05 CT GGAGTCGA ACGCGCTACC chrIII:3426874-3426954 50 9.13e-05 GCCCAATGCG GGGCTCGA ACCCGCGACA chrIII:1744634-1744714 3 9.13e-05 GC GGGCTCGA ACCCCGGAGC chrX:1208070-1208150 54 1.06e-04 caaacgtcct gggtttga cccccactCC chrIII:6374203-6374283 25 1.19e-04 GGTGGATACG GGACTCGA CGAGGATAAG chrX:16217894-16217974 12 1.19e-04 GCCACCTAGG GGACTCGA ACCCCTGACC chrV:13175796-13175876 53 1.51e-04 TTCATGGCCA GGATTTGA TGCGTCATGA chrX:9237797-9237877 63 1.51e-04 GAGAGGGCTG GGGTTCAA TTCCCCATAC chrIV:1514588-1514668 53 1.51e-04 TGCGAGACCC GGGTTCAA TTCCCGGCCG chrI:12601758-12601838 65 1.51e-04 GAGAGGGCTG GGGTTCAA TTCCCCAT chrV:16640586-16640666 41 1.51e-04 tgcgagaccc gggttcaa ttcccggccg chrIII:2711689-2711769 71 1.51e-04 GAGAGGTCCC GGGTTCAA TC chrX:4453253-4453333 67 1.66e-04 GGAGGCTAGT AGGTTCGA TTCCAT chrI:754677-754757 64 1.66e-04 CGGAGGGCGC AGGTTCGA ATCCTGCGG chrV:15156668-15156748 64 2.11e-04 GAAAGGTTGG TGGTTCGA GCCCACCCG chrIII:13224559-13224639 68 2.11e-04 CTTAGGTCAC TGGTTCGA ATCCG chrIV:7960856-7960936 49 2.11e-04 ACTGACCAAA GCGTTCGA AACTTTGCCG chrIV:10311225-10311305 37 2.11e-04 TCGGGTCGCA GGATTCAA AGTCCTGAGT chrX:13261231-13261311 21 2.11e-04 AGAAGGTCGC TGGTTCGA TTCCAGCATG chrX:8877306-8877386 56 2.11e-04 CAATGGTAGC GCGTTCGA CTCCAGATCG chrV:15480686-15480766 69 2.11e-04 CTTAGGTCGC TGGTTCGA ATCC chrV:3582220-3582300 56 2.29e-04 AGAAATAATA AGATTCGA TATCTCTTCA chrI:11910261-11910341 50 2.29e-04 CCCCAAATGA AGATTCGA AATAAAAAAA chrV:6335391-6335471 29 2.87e-04 CAGTGGCAGA GCATTCGA TTGCAGATCG chrV:6559722-6559802 57 2.87e-04 CAGTGGCAGA GCATTCGA CTGCAGATCG chrIII:5705425-5705505 12 2.87e-04 TTGCCGACTT GGTTTCGA CGATTCCAAC chrII:12435537-12435617 54 2.87e-04 AGCAGCGAGT GGTTTCGA TCCACCGACC chrIII:8069377-8069457 61 2.87e-04 TTCTCGCTTT GGGTGCGA GAGGTCCCGG chrX:15751385-15751465 68 2.87e-04 TTCTCGCTTT GGGTGCGA GAGGT chrI:14758872-14758952 20 3.00e-04 ATGTGCAGGT GGATGCGA ATCGTAGATG chrX:13443423-13443503 18 3.27e-04 ACGCCCAATC GGCTTCGA ACTTGAAGCA chrX:16619298-16619378 46 3.61e-04 TCCCcggccg ggaattga acccgggtct chrX:16618253-16618333 54 3.61e-04 TCCCcggccg ggaattga acccgggtct chrX:7378739-7378819 56 3.61e-04 GGAGGTATGG GGAATTGA ACCCCAGCCC chrV:16648773-16648853 4 3.61e-04 ccg ggaattga acccgggtct chrV:16645662-16645742 55 3.61e-04 TCCCcggccg ggaattga acccgggtct chrX:15242884-15242964 3 4.55e-04 AA AGAATCGA ACCCGGGAGC chrIV:8513954-8514034 47 5.58e-04 CGAAGATGAT GAGTTCGA GTACCGTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7906587-7906667 1.3e-05 46_[+1]_26 chrIV:15793405-15793485 1.3e-05 59_[+1]_13 chrII:8631933-8632013 1.3e-05 34_[+1]_38 chrX:10667595-10667675 1.3e-05 46_[+1]_26 chrX:13717216-13717296 1.3e-05 28_[+1]_44 chrX:16042608-16042688 1.3e-05 10_[+1]_62 chrIII:8473486-8473566 1.3e-05 36_[+1]_36 chrV:8495292-8495372 1.3e-05 59_[+1]_13 chrX:8037542-8037622 1.3e-05 13_[+1]_59 chrX:4410674-4410754 1.3e-05 26_[+1]_46 chrX:13782246-13782326 1.3e-05 52_[+1]_20 chrI:5985127-5985207 2.8e-05 18_[+1]_54 chrX:11163326-11163406 2.8e-05 42_[+1]_30 chrX:8417896-8417976 2.8e-05 26_[+1]_46 chrX:10731958-10732038 2.8e-05 41_[+1]_31 chrII:2735753-2735833 2.8e-05 51_[+1]_21 chrX:13284763-13284843 2.8e-05 13_[+1]_59 chrIII:2031332-2031412 4.1e-05 1_[+1]_71 chrIII:2304250-2304330 4.1e-05 27_[+1]_45 chrX:10666982-10667062 5.6e-05 50_[+1]_22 chrX:13283621-13283701 5.6e-05 26_[+1]_46 chrX:11993511-11993591 5.6e-05 20_[+1]_52 chrIII:2032870-2032950 5.6e-05 37_[+1]_35 chrX:7176954-7177034 5.6e-05 39_[+1]_33 chrX:4607456-4607536 5.6e-05 7_[+1]_65 chrX:15146545-15146625 6.7e-05 27_[+1]_45 chrIII:1163337-1163417 6.7e-05 27_[+1]_45 chrIV:5344333-5344413 8e-05 4_[+1]_68 chrX:14228930-14229010 8e-05 27_[+1]_45 chrX:8945146-8945226 8e-05 51_[+1]_21 chrIV:7344179-7344259 8e-05 14_[+1]_58 chrI:946079-946159 8e-05 2_[+1]_70 chrIII:3426874-3426954 9.1e-05 49_[+1]_23 chrIII:1744634-1744714 9.1e-05 2_[+1]_70 chrX:1208070-1208150 0.00011 53_[+1]_19 chrIII:6374203-6374283 0.00012 24_[+1]_48 chrX:16217894-16217974 0.00012 11_[+1]_61 chrV:13175796-13175876 0.00015 52_[+1]_20 chrX:9237797-9237877 0.00015 62_[+1]_10 chrIV:1514588-1514668 0.00015 52_[+1]_20 chrI:12601758-12601838 0.00015 64_[+1]_8 chrV:16640586-16640666 0.00015 40_[+1]_32 chrIII:2711689-2711769 0.00015 70_[+1]_2 chrX:4453253-4453333 0.00017 66_[+1]_6 chrI:754677-754757 0.00017 63_[+1]_9 chrV:15156668-15156748 0.00021 63_[+1]_9 chrIII:13224559-13224639 0.00021 67_[+1]_5 chrIV:7960856-7960936 0.00021 48_[+1]_24 chrIV:10311225-10311305 0.00021 36_[+1]_36 chrX:13261231-13261311 0.00021 20_[+1]_52 chrX:8877306-8877386 0.00021 55_[+1]_17 chrV:15480686-15480766 0.00021 68_[+1]_4 chrV:3582220-3582300 0.00023 55_[+1]_17 chrI:11910261-11910341 0.00023 49_[+1]_23 chrV:6335391-6335471 0.00029 28_[+1]_44 chrV:6559722-6559802 0.00029 56_[+1]_16 chrIII:5705425-5705505 0.00029 11_[+1]_61 chrII:12435537-12435617 0.00029 53_[+1]_19 chrIII:8069377-8069457 0.00029 60_[+1]_12 chrX:15751385-15751465 0.00029 67_[+1]_5 chrI:14758872-14758952 0.0003 19_[+1]_53 chrX:13443423-13443503 0.00033 17_[+1]_55 chrX:16619298-16619378 0.00036 45_[+1]_27 chrX:16618253-16618333 0.00036 53_[+1]_19 chrX:7378739-7378819 0.00036 55_[+1]_17 chrV:16648773-16648853 0.00036 3_[+1]_69 chrV:16645662-16645742 0.00036 54_[+1]_18 chrX:15242884-15242964 0.00046 2_[+1]_70 chrIV:8513954-8514034 0.00056 46_[+1]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGRTTCGA width=8 seqs=69 chrX:7906587-7906667 ( 47) GGGTTCGA 1 chrIV:15793405-15793485 ( 60) GGGTTCGA 1 chrII:8631933-8632013 ( 35) GGGTTCGA 1 chrX:10667595-10667675 ( 47) GGGTTCGA 1 chrX:13717216-13717296 ( 29) GGGTTCGA 1 chrX:16042608-16042688 ( 11) GGGTTCGA 1 chrIII:8473486-8473566 ( 37) GGGTTCGA 1 chrV:8495292-8495372 ( 60) GGGTTCGA 1 chrX:8037542-8037622 ( 14) GGGTTCGA 1 chrX:4410674-4410754 ( 27) GGGTTCGA 1 chrX:13782246-13782326 ( 53) GGGTTCGA 1 chrI:5985127-5985207 ( 19) GGATTCGA 1 chrX:11163326-11163406 ( 43) GGATTCGA 1 chrX:8417896-8417976 ( 27) GGATTCGA 1 chrX:10731958-10732038 ( 42) GGATTCGA 1 chrII:2735753-2735833 ( 52) GGATTCGA 1 chrX:13284763-13284843 ( 14) GGATTCGA 1 chrIII:2031332-2031412 ( 2) GGGATCGA 1 chrIII:2304250-2304330 ( 28) GGGATCGA 1 chrX:10666982-10667062 ( 51) GGAATCGA 1 chrX:13283621-13283701 ( 27) GGAATCGA 1 chrX:11993511-11993591 ( 21) GGAATCGA 1 chrIII:2032870-2032950 ( 38) GGAATCGA 1 chrX:7176954-7177034 ( 40) GGAATCGA 1 chrX:4607456-4607536 ( 8) GGAATCGA 1 chrX:15146545-15146625 ( 28) GGGGTCGA 1 chrIII:1163337-1163417 ( 28) GGGGTCGA 1 chrIV:5344333-5344413 ( 5) GGAGTCGA 1 chrX:14228930-14229010 ( 28) GGAGTCGA 1 chrX:8945146-8945226 ( 52) GGAGTCGA 1 chrIV:7344179-7344259 ( 15) GGAGTCGA 1 chrI:946079-946159 ( 3) GGAGTCGA 1 chrIII:3426874-3426954 ( 50) GGGCTCGA 1 chrIII:1744634-1744714 ( 3) GGGCTCGA 1 chrX:1208070-1208150 ( 54) GGGTTTGA 1 chrIII:6374203-6374283 ( 25) GGACTCGA 1 chrX:16217894-16217974 ( 12) GGACTCGA 1 chrV:13175796-13175876 ( 53) GGATTTGA 1 chrX:9237797-9237877 ( 63) GGGTTCAA 1 chrIV:1514588-1514668 ( 53) GGGTTCAA 1 chrI:12601758-12601838 ( 65) GGGTTCAA 1 chrV:16640586-16640666 ( 41) GGGTTCAA 1 chrIII:2711689-2711769 ( 71) GGGTTCAA 1 chrX:4453253-4453333 ( 67) AGGTTCGA 1 chrI:754677-754757 ( 64) AGGTTCGA 1 chrV:15156668-15156748 ( 64) TGGTTCGA 1 chrIII:13224559-13224639 ( 68) TGGTTCGA 1 chrIV:7960856-7960936 ( 49) GCGTTCGA 1 chrIV:10311225-10311305 ( 37) GGATTCAA 1 chrX:13261231-13261311 ( 21) TGGTTCGA 1 chrX:8877306-8877386 ( 56) GCGTTCGA 1 chrV:15480686-15480766 ( 69) TGGTTCGA 1 chrV:3582220-3582300 ( 56) AGATTCGA 1 chrI:11910261-11910341 ( 50) AGATTCGA 1 chrV:6335391-6335471 ( 29) GCATTCGA 1 chrV:6559722-6559802 ( 57) GCATTCGA 1 chrIII:5705425-5705505 ( 12) GGTTTCGA 1 chrII:12435537-12435617 ( 54) GGTTTCGA 1 chrIII:8069377-8069457 ( 61) GGGTGCGA 1 chrX:15751385-15751465 ( 68) GGGTGCGA 1 chrI:14758872-14758952 ( 20) GGATGCGA 1 chrX:13443423-13443503 ( 18) GGCTTCGA 1 chrX:16619298-16619378 ( 46) GGAATTGA 1 chrX:16618253-16618333 ( 54) GGAATTGA 1 chrX:7378739-7378819 ( 56) GGAATTGA 1 chrV:16648773-16648853 ( 4) GGAATTGA 1 chrV:16645662-16645742 ( 55) GGAATTGA 1 chrX:15242884-15242964 ( 3) AGAATCGA 1 chrIV:8513954-8514034 ( 47) GAGTTCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.12809 E= 3.3e-021 -193 -1275 191 -219 -425 -198 200 -1275 75 -398 109 -319 -44 -198 -119 127 -1275 -1275 -241 185 -1275 198 -1275 -138 -167 -1275 198 -1275 186 -1275 -1275 -1275 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 3.3e-021 0.072464 0.000000 0.869565 0.057971 0.014493 0.057971 0.927536 0.000000 0.463768 0.014493 0.492754 0.028986 0.202899 0.057971 0.101449 0.637681 0.000000 0.000000 0.043478 0.956522 0.000000 0.898551 0.000000 0.101449 0.086957 0.000000 0.913043 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 regular expression -------------------------------------------------------------------------------- GG[GA][TA]TCGA -------------------------------------------------------------------------------- Time 5.17 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-2 width = 8 sites = 21 llr = 227 E-value = 2.7e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :9::::a: pos.-specific C :::a:a:: probability G :1a::::a matrix T a:::a::: bits 2.1 ** * * 1.9 * ****** 1.7 * ****** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.6 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6135766-6135846 71 1.48e-05 GTGCCGTCGA TAGCTCAG TT chrX:13435926-13436006 47 1.48e-05 ACAGCCGCCA TAGCTCAG TCGGTTAGAG chrV:6335391-6335471 14 1.48e-05 TCGTGGGGTA TAGCTCAG TGGCAGAGCA chrV:6559722-6559802 42 1.48e-05 CATGGGGGTA TAGCTCAG TGGCAGAGCA chrX:9238833-9238913 38 1.48e-05 AGCGGGGGTA TAGCTCAG TGGTAGAGCG chrX:9237797-9237877 21 1.48e-05 TGTGGGGGTA TAGCTCAG TGGTAGAGCG chrIV:15793405-15793485 17 1.48e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrIII:13224559-13224639 14 1.48e-05 GTGCCGTCGA TAGCTCAG TTGGTAGAGC chrV:8247456-8247536 32 1.48e-05 ATGCCGTCGA TAGCTCAG TTGGTAGAGC chrX:11933693-11933773 42 1.48e-05 TGGGCCCGTA TAGCTCAG AGGCAGAGCG chrIII:11554814-11554894 18 1.48e-05 CGTGCCTCGA TAGCTCAG TTGGGAGAGC chrI:12601758-12601838 23 1.48e-05 TTTACCTGTG TAGCTCAG TGGTAGAGCG chrX:14679132-14679212 35 1.48e-05 ACAGCCGCCA TAGCTCAG TCGGTTAGAG chrX:487819-487899 3 1.48e-05 TA TAGCTCAG TGGTAGAGCG chrII:4565353-4565433 43 1.48e-05 GTCGGGGGTA TAGCTCAG TGGTAGAGCG chrV:8495292-8495372 17 1.48e-05 GGGGCCTCCT TAGCTCAG TTGGTAGAGC chrX:13782246-13782326 10 1.48e-05 CCGCCCGGT TAGCTCAG TCGGTAGAGC chrII:12362419-12362499 37 1.48e-05 TGTGCCGCCA TAGCTCAG TCGGTTAGAG chrV:15480686-15480766 15 1.48e-05 ACGCCGTCGA TAGCTCAG TTGGTAGAGC chrII:769433-769513 35 2.73e-05 AGTGTAGTTT TGGCTCAG ATGGGTAGAG chrX:13293160-13293240 39 2.73e-05 TCTGCCTCAT TGGCTCAG TGGCAGAGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6135766-6135846 1.5e-05 70_[+2]_2 chrX:13435926-13436006 1.5e-05 46_[+2]_26 chrV:6335391-6335471 1.5e-05 13_[+2]_59 chrV:6559722-6559802 1.5e-05 41_[+2]_31 chrX:9238833-9238913 1.5e-05 37_[+2]_35 chrX:9237797-9237877 1.5e-05 20_[+2]_52 chrIV:15793405-15793485 1.5e-05 16_[+2]_56 chrIII:13224559-13224639 1.5e-05 13_[+2]_59 chrV:8247456-8247536 1.5e-05 31_[+2]_41 chrX:11933693-11933773 1.5e-05 41_[+2]_31 chrIII:11554814-11554894 1.5e-05 17_[+2]_55 chrI:12601758-12601838 1.5e-05 22_[+2]_50 chrX:14679132-14679212 1.5e-05 34_[+2]_38 chrX:487819-487899 1.5e-05 2_[+2]_70 chrII:4565353-4565433 1.5e-05 42_[+2]_30 chrV:8495292-8495372 1.5e-05 16_[+2]_56 chrX:13782246-13782326 1.5e-05 9_[+2]_63 chrII:12362419-12362499 1.5e-05 36_[+2]_36 chrV:15480686-15480766 1.5e-05 14_[+2]_58 chrII:769433-769513 2.7e-05 34_[+2]_38 chrX:13293160-13293240 2.7e-05 38_[+2]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=21 chrI:6135766-6135846 ( 71) TAGCTCAG 1 chrX:13435926-13436006 ( 47) TAGCTCAG 1 chrV:6335391-6335471 ( 14) TAGCTCAG 1 chrV:6559722-6559802 ( 42) TAGCTCAG 1 chrX:9238833-9238913 ( 38) TAGCTCAG 1 chrX:9237797-9237877 ( 21) TAGCTCAG 1 chrIV:15793405-15793485 ( 17) TAGCTCAG 1 chrIII:13224559-13224639 ( 14) TAGCTCAG 1 chrV:8247456-8247536 ( 32) TAGCTCAG 1 chrX:11933693-11933773 ( 42) TAGCTCAG 1 chrIII:11554814-11554894 ( 18) TAGCTCAG 1 chrI:12601758-12601838 ( 23) TAGCTCAG 1 chrX:14679132-14679212 ( 35) TAGCTCAG 1 chrX:487819-487899 ( 3) TAGCTCAG 1 chrII:4565353-4565433 ( 43) TAGCTCAG 1 chrV:8495292-8495372 ( 17) TAGCTCAG 1 chrX:13782246-13782326 ( 10) TAGCTCAG 1 chrII:12362419-12362499 ( 37) TAGCTCAG 1 chrV:15480686-15480766 ( 15) TAGCTCAG 1 chrII:769433-769513 ( 35) TGGCTCAG 1 chrX:13293160-13293240 ( 39) TGGCTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.25601 E= 2.7e-016 -1104 -1104 -1104 192 171 -1104 -128 -1104 -1104 -1104 211 -1104 -1104 213 -1104 -1104 -1104 -1104 -1104 192 -1104 213 -1104 -1104 186 -1104 -1104 -1104 -1104 -1104 211 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 2.7e-016 0.000000 0.000000 0.000000 1.000000 0.904762 0.000000 0.095238 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 9.31 secs. ******************************************************************************** ******************************************************************************** MOTIF GCKCTACC MEME-3 width = 8 sites = 37 llr = 336 E-value = 1.4e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCKCTACC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::62: pos.-specific C 1a:a:28a probability G 9:4::2:: matrix T ::6:a::: bits 2.1 * * * 1.9 ** ** * 1.7 ** ** * 1.5 ** ** * Relative 1.3 ** ** ** Entropy 1.1 ***** ** (13.1 bits) 0.9 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTCTACC consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKCTACC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9024434-9024514 27 1.21e-05 CAAGACCAAC GCTCTACC ACTGAGCTAT chrV:15479999-15480079 34 1.21e-05 CGAAGCGGGC GCTCTACC TCTGAGCTAT chrX:5451224-5451304 28 1.21e-05 AAAGTCTCAC GCTCTACC AACTGAGCTA chrI:7279379-7279459 24 1.21e-05 AGAGTCTGGT GCTCTACC GGCTGAGCTA chrV:18412474-18412554 57 1.21e-05 CAAGACCAAC GCTCTACC ACTGAGCTAT chrIII:13411347-13411427 67 1.21e-05 CAAGACCAAC GCTCTACC ACTGAG chrX:16217894-16217974 49 1.21e-05 AAAGTCTCAC GCTCTACC AACTGAGCTA chrX:13284763-13284843 62 1.21e-05 ACAGTCCTCC GCTCTACC AACTGAGCTA chrX:7507318-7507398 20 1.21e-05 CTAAGGGAGC GCTCTACC ACTGAGCTAT chrV:17542497-17542577 8 1.21e-05 GTCCTCC GCTCTACC AACTGAGCTA chrX:15241376-15241456 27 1.21e-05 AGAGTCTGGT GCTCTACC GACTGAGCTA chrIV:5344333-5344413 15 2.26e-05 GGAGTCGAAC GCGCTACC ATTGCGCCAA chrX:14228930-14229010 38 2.26e-05 GGAGTCGAAC GCGCTACC ATTGCGCCAA chrX:8945146-8945226 62 2.26e-05 GGAGTCGAAC GCGCTACC ATTGCGCCAA chrIV:7344179-7344259 25 2.26e-05 GGAGTCGAAC GCGCTACC ATTGCGCCAA chrI:946079-946159 13 2.26e-05 GGAGTCGAAC GCGCTACC ATTGCGCCAA chrII:9713255-9713335 17 3.26e-05 TCAGTCGTGC GCTCTCCC AACTGAGCTA chrX:16503163-16503243 29 3.26e-05 TCAGTCGTAC GCTCTCCC AACTGAGCTA chrX:13283621-13283701 64 4.28e-05 CTAGACAGAC GCTCTGCC ACTGAGCCA chrV:9407075-9407155 13 4.28e-05 CTAGACAGAC GCTCTGCC ACTGAGCCAA chrV:8496139-8496219 13 4.28e-05 CTAGACAGAC GCTCTGCC ACTGAGCCAA chrX:9238833-9238913 53 5.15e-05 CAGTGGTAGA GCGCTCCC TTAGCATGGG chrX:9237797-9237877 36 5.15e-05 CAGTGGTAGA GCGCTCCC TTAGCATGGG chrI:12601758-12601838 38 5.15e-05 CAGTGGTAGA GCGCTCCC TTAGCATGGG chrII:4565353-4565433 58 5.15e-05 CAGTGGTAGA GCGCTCCC TTAGCATGGG chrV:8230251-8230331 3 6.03e-05 AC GCGCTGCC TACTGCGCTA chrV:3455323-3455403 51 6.03e-05 TGAGACTGAC GCGCTGCC TACTGCGCTA chrV:20350559-20350639 18 6.03e-05 ACAGCCGAAC GCGCTGCC TATTGCGCCA chrIII:1164820-1164900 28 7.50e-05 TTAGACCCAC GCTCTAAC CGACTGAGCT chrX:2526243-2526323 23 7.50e-05 TTAGACCCAC GCTCTAAC CGACTGAGCT chrIII:1163337-1163417 65 7.50e-05 TTAGACCCAC GCTCTAAC CGACTGAG chrX:7906587-7906667 28 9.98e-05 AGGATTTATG GCTCTCAC CCATAAGGCC chrI:11977953-11978033 69 9.98e-05 AGGATTTATG GCTCTCAC CCAT chrX:4410674-4410754 8 9.98e-05 ATTTATG GCTCTCAC CCATAAGGCC chrII:7049660-7049740 47 1.35e-04 AAATCCACGA CCTCTACC TGCGAATCCT chrIII:698983-699063 51 1.35e-04 ACCCACGCAC CCTCTACC CTATTGCTCC chrIII:11836260-11836340 35 1.45e-04 GGAGGAATGG GCGCTGAC GTCACAATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKCTACC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9024434-9024514 1.2e-05 26_[+3]_46 chrV:15479999-15480079 1.2e-05 33_[+3]_39 chrX:5451224-5451304 1.2e-05 27_[+3]_45 chrI:7279379-7279459 1.2e-05 23_[+3]_49 chrV:18412474-18412554 1.2e-05 56_[+3]_16 chrIII:13411347-13411427 1.2e-05 66_[+3]_6 chrX:16217894-16217974 1.2e-05 48_[+3]_24 chrX:13284763-13284843 1.2e-05 61_[+3]_11 chrX:7507318-7507398 1.2e-05 19_[+3]_53 chrV:17542497-17542577 1.2e-05 7_[+3]_65 chrX:15241376-15241456 1.2e-05 26_[+3]_46 chrIV:5344333-5344413 2.3e-05 14_[+3]_58 chrX:14228930-14229010 2.3e-05 37_[+3]_35 chrX:8945146-8945226 2.3e-05 61_[+3]_11 chrIV:7344179-7344259 2.3e-05 24_[+3]_48 chrI:946079-946159 2.3e-05 12_[+3]_60 chrII:9713255-9713335 3.3e-05 16_[+3]_56 chrX:16503163-16503243 3.3e-05 28_[+3]_44 chrX:13283621-13283701 4.3e-05 63_[+3]_9 chrV:9407075-9407155 4.3e-05 12_[+3]_60 chrV:8496139-8496219 4.3e-05 12_[+3]_60 chrX:9238833-9238913 5.1e-05 52_[+3]_20 chrX:9237797-9237877 5.1e-05 35_[+3]_37 chrI:12601758-12601838 5.1e-05 37_[+3]_35 chrII:4565353-4565433 5.1e-05 57_[+3]_15 chrV:8230251-8230331 6e-05 2_[+3]_70 chrV:3455323-3455403 6e-05 50_[+3]_22 chrV:20350559-20350639 6e-05 17_[+3]_55 chrIII:1164820-1164900 7.5e-05 27_[+3]_45 chrX:2526243-2526323 7.5e-05 22_[+3]_50 chrIII:1163337-1163417 7.5e-05 64_[+3]_8 chrX:7906587-7906667 0.0001 27_[+3]_45 chrI:11977953-11978033 0.0001 68_[+3]_4 chrX:4410674-4410754 0.0001 7_[+3]_65 chrII:7049660-7049740 0.00013 46_[+3]_26 chrIII:698983-699063 0.00013 50_[+3]_22 chrIII:11836260-11836340 0.00015 34_[+3]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKCTACC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCKCTACC width=8 seqs=37 chrX:9024434-9024514 ( 27) GCTCTACC 1 chrV:15479999-15480079 ( 34) GCTCTACC 1 chrX:5451224-5451304 ( 28) GCTCTACC 1 chrI:7279379-7279459 ( 24) GCTCTACC 1 chrV:18412474-18412554 ( 57) GCTCTACC 1 chrIII:13411347-13411427 ( 67) GCTCTACC 1 chrX:16217894-16217974 ( 49) GCTCTACC 1 chrX:13284763-13284843 ( 62) GCTCTACC 1 chrX:7507318-7507398 ( 20) GCTCTACC 1 chrV:17542497-17542577 ( 8) GCTCTACC 1 chrX:15241376-15241456 ( 27) GCTCTACC 1 chrIV:5344333-5344413 ( 15) GCGCTACC 1 chrX:14228930-14229010 ( 38) GCGCTACC 1 chrX:8945146-8945226 ( 62) GCGCTACC 1 chrIV:7344179-7344259 ( 25) GCGCTACC 1 chrI:946079-946159 ( 13) GCGCTACC 1 chrII:9713255-9713335 ( 17) GCTCTCCC 1 chrX:16503163-16503243 ( 29) GCTCTCCC 1 chrX:13283621-13283701 ( 64) GCTCTGCC 1 chrV:9407075-9407155 ( 13) GCTCTGCC 1 chrV:8496139-8496219 ( 13) GCTCTGCC 1 chrX:9238833-9238913 ( 53) GCGCTCCC 1 chrX:9237797-9237877 ( 36) GCGCTCCC 1 chrI:12601758-12601838 ( 38) GCGCTCCC 1 chrII:4565353-4565433 ( 58) GCGCTCCC 1 chrV:8230251-8230331 ( 3) GCGCTGCC 1 chrV:3455323-3455403 ( 51) GCGCTGCC 1 chrV:20350559-20350639 ( 18) GCGCTGCC 1 chrIII:1164820-1164900 ( 28) GCTCTAAC 1 chrX:2526243-2526323 ( 23) GCTCTAAC 1 chrIII:1163337-1163417 ( 65) GCTCTAAC 1 chrX:7906587-7906667 ( 28) GCTCTCAC 1 chrI:11977953-11978033 ( 69) GCTCTCAC 1 chrX:4410674-4410754 ( 8) GCTCTCAC 1 chrII:7049660-7049740 ( 47) CCTCTACC 1 chrIII:698983-699063 ( 51) CCTCTACC 1 chrIII:11836260-11836340 ( 35) GCGCTGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKCTACC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.1086 E= 1.4e-016 -1185 -208 203 -1185 -1185 213 -1185 -1185 -1185 -1185 60 129 -1185 213 -1185 -1185 -1185 -1185 -1185 192 104 9 -29 -1185 -54 183 -1185 -1185 -1185 213 -1185 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKCTACC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 1.4e-016 0.000000 0.054054 0.945946 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.351351 0.648649 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.567568 0.243243 0.189189 0.000000 0.189189 0.810811 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKCTACC MEME-3 regular expression -------------------------------------------------------------------------------- GC[TG]CT[AC]CC -------------------------------------------------------------------------------- Time 12.94 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGMGCYA MEME-4 width = 8 sites = 33 llr = 306 E-value = 5.3e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGMGCYA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::6:::a pos.-specific C 7::4:a5: probability G ::a:a::: matrix T 3a::::5: bits 2.1 * ** 1.9 ** ** * 1.7 ** ** * 1.5 ** ** * Relative 1.3 *** ** * Entropy 1.1 ******** (13.4 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGAGCTA consensus T C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMGCYA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9024434-9024514 36 2.76e-05 CGCTCTACCA CTGAGCTA TAAGGGCGAT chrV:15479999-15480079 43 2.76e-05 CGCTCTACCT CTGAGCTA TGCCCCCGAC chrX:5451224-5451304 38 2.76e-05 GCTCTACCAA CTGAGCTA AGGAGGCCCT chrI:7279379-7279459 34 2.76e-05 GCTCTACCGG CTGAGCTA ACCGGGCCCG chrX:13283621-13283701 73 2.76e-05 CGCTCTGCCA CTGAGCCA chrV:9407075-9407155 22 2.76e-05 CGCTCTGCCA CTGAGCCA ATGAGGCGGC chrII:9713255-9713335 27 2.76e-05 GCTCTCCCAA CTGAGCTA TCGAGGCGGT chrV:8496139-8496219 22 2.76e-05 CGCTCTGCCA CTGAGCCA ATGAGGCGCG chrV:18412474-18412554 66 2.76e-05 CGCTCTACCA CTGAGCTA TAAGGGC chrX:13655973-13656053 2 2.76e-05 A CTGAGCTA ACCGGGCGGC chrX:16503163-16503243 39 2.76e-05 GCTCTCCCAA CTGAGCTA TCGAGGCACG chrIII:1164820-1164900 39 2.76e-05 CTCTAACCGA CTGAGCTA TGGCGGCACG chrX:2526243-2526323 34 2.76e-05 CTCTAACCGA CTGAGCTA TGGCGGCCAC chrV:8499619-8499699 3 2.76e-05 AA CTGAGCTA AGGAGGCCCC chrX:16217894-16217974 59 2.76e-05 GCTCTACCAA CTGAGCTA AGGAGGCCCT chrX:13284763-13284843 72 2.76e-05 GCTCTACCAA CTGAGCTA T chrX:7507318-7507398 29 2.76e-05 CGCTCTACCA CTGAGCTA TACCCCCGGC chrV:17542497-17542577 18 2.76e-05 GCTCTACCAA CTGAGCTA TCGACGGCAT chrX:15241376-15241456 37 2.76e-05 GCTCTACCGA CTGAGCTA ACCGGGCCGC chrV:8230251-8230331 13 5.04e-05 GCGCTGCCTA CTGCGCTA CGGAAGCACG chrIV:15476511-15476591 52 5.04e-05 CGGTAACCGA CTGCGCCA CGCATGCATG chrV:3455323-3455403 61 5.04e-05 GCGCTGCCTA CTGCGCTA CGGAAGCACG chrX:14211330-14211410 36 5.04e-05 CCATTTACCA CTGCGCCA CCCATCTTCG chrV:17687548-17687628 49 5.04e-05 CTTTACCCTA CTGCGCCA CTTCGACATT chrX:8944283-8944363 6 1.09e-04 TACCA TTGCGCCA AGCAGTCATG chrIV:5344333-5344413 24 1.09e-04 CGCGCTACCA TTGCGCCA AGCAGTCGAC chrX:14228930-14229010 47 1.09e-04 CGCGCTACCA TTGCGCCA AGCAGTCATA chrX:10148676-10148756 31 1.09e-04 GCGTTATCCA TTGCGCCA CGCGGCCAGA chrX:8640838-8640918 14 1.09e-04 GCGTTATCCA TTGCGCCA CGCGGCCACA chrV:20350559-20350639 28 1.09e-04 GCGCTGCCTA TTGCGCCA CGGAAGCACG chrX:8945146-8945226 71 1.09e-04 CGCGCTACCA TTGCGCCA AG chrIV:7344179-7344259 34 1.09e-04 CGCGCTACCA TTGCGCCA AGCAGTCACG chrI:946079-946159 22 1.09e-04 CGCGCTACCA TTGCGCCA AGCAGTCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMGCYA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9024434-9024514 2.8e-05 35_[+4]_37 chrV:15479999-15480079 2.8e-05 42_[+4]_30 chrX:5451224-5451304 2.8e-05 37_[+4]_35 chrI:7279379-7279459 2.8e-05 33_[+4]_39 chrX:13283621-13283701 2.8e-05 72_[+4] chrV:9407075-9407155 2.8e-05 21_[+4]_51 chrII:9713255-9713335 2.8e-05 26_[+4]_46 chrV:8496139-8496219 2.8e-05 21_[+4]_51 chrV:18412474-18412554 2.8e-05 65_[+4]_7 chrX:13655973-13656053 2.8e-05 1_[+4]_71 chrX:16503163-16503243 2.8e-05 38_[+4]_34 chrIII:1164820-1164900 2.8e-05 38_[+4]_34 chrX:2526243-2526323 2.8e-05 33_[+4]_39 chrV:8499619-8499699 2.8e-05 2_[+4]_70 chrX:16217894-16217974 2.8e-05 58_[+4]_14 chrX:13284763-13284843 2.8e-05 71_[+4]_1 chrX:7507318-7507398 2.8e-05 28_[+4]_44 chrV:17542497-17542577 2.8e-05 17_[+4]_55 chrX:15241376-15241456 2.8e-05 36_[+4]_36 chrV:8230251-8230331 5e-05 12_[+4]_60 chrIV:15476511-15476591 5e-05 51_[+4]_21 chrV:3455323-3455403 5e-05 60_[+4]_12 chrX:14211330-14211410 5e-05 35_[+4]_37 chrV:17687548-17687628 5e-05 48_[+4]_24 chrX:8944283-8944363 0.00011 5_[+4]_67 chrIV:5344333-5344413 0.00011 23_[+4]_49 chrX:14228930-14229010 0.00011 46_[+4]_26 chrX:10148676-10148756 0.00011 30_[+4]_42 chrX:8640838-8640918 0.00011 13_[+4]_59 chrV:20350559-20350639 0.00011 27_[+4]_45 chrX:8945146-8945226 0.00011 70_[+4]_2 chrIV:7344179-7344259 0.00011 33_[+4]_39 chrI:946079-946159 0.00011 21_[+4]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMGCYA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGMGCYA width=8 seqs=33 chrX:9024434-9024514 ( 36) CTGAGCTA 1 chrV:15479999-15480079 ( 43) CTGAGCTA 1 chrX:5451224-5451304 ( 38) CTGAGCTA 1 chrI:7279379-7279459 ( 34) CTGAGCTA 1 chrX:13283621-13283701 ( 73) CTGAGCCA 1 chrV:9407075-9407155 ( 22) CTGAGCCA 1 chrII:9713255-9713335 ( 27) CTGAGCTA 1 chrV:8496139-8496219 ( 22) CTGAGCCA 1 chrV:18412474-18412554 ( 66) CTGAGCTA 1 chrX:13655973-13656053 ( 2) CTGAGCTA 1 chrX:16503163-16503243 ( 39) CTGAGCTA 1 chrIII:1164820-1164900 ( 39) CTGAGCTA 1 chrX:2526243-2526323 ( 34) CTGAGCTA 1 chrV:8499619-8499699 ( 3) CTGAGCTA 1 chrX:16217894-16217974 ( 59) CTGAGCTA 1 chrX:13284763-13284843 ( 72) CTGAGCTA 1 chrX:7507318-7507398 ( 29) CTGAGCTA 1 chrV:17542497-17542577 ( 18) CTGAGCTA 1 chrX:15241376-15241456 ( 37) CTGAGCTA 1 chrV:8230251-8230331 ( 13) CTGCGCTA 1 chrIV:15476511-15476591 ( 52) CTGCGCCA 1 chrV:3455323-3455403 ( 61) CTGCGCTA 1 chrX:14211330-14211410 ( 36) CTGCGCCA 1 chrV:17687548-17687628 ( 49) CTGCGCCA 1 chrX:8944283-8944363 ( 6) TTGCGCCA 1 chrIV:5344333-5344413 ( 24) TTGCGCCA 1 chrX:14228930-14229010 ( 47) TTGCGCCA 1 chrX:10148676-10148756 ( 31) TTGCGCCA 1 chrX:8640838-8640918 ( 14) TTGCGCCA 1 chrV:20350559-20350639 ( 28) TTGCGCCA 1 chrX:8945146-8945226 ( 71) TTGCGCCA 1 chrIV:7344179-7344259 ( 34) TTGCGCCA 1 chrI:946079-946159 ( 22) TTGCGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMGCYA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.87609 E= 5.3e-014 -1169 167 -1169 4 -1169 -1169 -1169 192 -1169 -1169 211 -1169 106 89 -1169 -1169 -1169 -1169 211 -1169 -1169 213 -1169 -1169 -1169 99 -1169 104 186 -1169 -1169 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMGCYA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 5.3e-014 0.000000 0.727273 0.000000 0.272727 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.575758 0.424242 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.454545 0.000000 0.545455 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMGCYA MEME-4 regular expression -------------------------------------------------------------------------------- [CT]TG[AC]GC[TC]A -------------------------------------------------------------------------------- Time 16.45 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGARTGG MEME-5 width = 8 sites = 22 llr = 210 E-value = 9.6e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGARTGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::94::: pos.-specific C aa:1:2:: probability G ::a:62aa matrix T :::::6:: bits 2.1 *** ** 1.9 *** ** 1.7 *** ** 1.5 **** ** Relative 1.3 **** ** Entropy 1.1 ***** ** (13.7 bits) 0.9 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGAGTGG consensus AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGARTGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14162152-14162232 73 1.08e-05 GCAGTCATGT CCGAGTGG chrII:3267937-3268017 62 1.08e-05 GCAGTCATGT CCGAGTGG TTAAGGAGAT chrX:6867111-6867191 43 1.08e-05 CATCGAATGA CCGAGTGG TTAGCGAGTT chrIII:8639291-8639371 25 1.08e-05 GCACGGATGG CCGAGTGG TCTAAGGCGC chrIII:1354698-1354778 28 1.08e-05 tcccgcatgg ccgagtgg ttagtacgta chrX:13444429-13444509 34 1.08e-05 GCACGGATGG CCGAGTGG TCTAAGGCGC chrX:5709343-5709423 42 1.08e-05 GATCAGGTGG CCGAGTGG TTAAGGCGAT chrI:754677-754757 13 1.08e-05 GCCGTTCTGG CCGAGTGG TCTAAGGCGC chrX:13307987-13308067 45 2.38e-05 TTTCCCATGG CCGAATGG TCTAGTGGTA chrIII:8069377-8069457 30 2.38e-05 AAAATGTCGG CCGAATGG TCTAGTGGTA chrX:15751385-15751465 37 2.38e-05 CTTAGCATGG CCGAATGG TCTAGTGGTA chrIII:2711689-2711769 24 2.38e-05 GTTTTCGCGG CCGAATGG TCTAGTGGTA chrII:6491292-6491372 30 3.31e-05 CCGAATAAAA CCGAGCGG AGACTTCCTT chrII:2860307-2860387 45 3.31e-05 GGAGAGATGG CCGAGCGG TCCAAGGCGC chrX:8939524-8939604 36 3.31e-05 GGAGAGATGG CCGAGCGG TCTAAGGCGC chrX:12942430-12942510 38 3.31e-05 GGAGAGATGG CCGAGCGG TCTAAGGCGC chrX:11163326-11163406 61 6.49e-05 ACCCACGCCC CCGAAGGG ACTGGTGCCT chrI:6051183-6051263 1 6.49e-05 . CCGAAGGG ACTGGTGCCT chrX:8417896-8417976 45 6.49e-05 ACCCACGCCC CCGAAGGG ACTGGTGCCT chrII:2735753-2735833 70 6.49e-05 ACCCACGCCC CCGAAGGG ACT chrX:10666982-10667062 66 7.39e-05 CGAACCCGGG CCGCGTGG GTGAAAA chrII:11972422-11972502 34 9.22e-05 GCCACGTAGT CCGCGCGG CATTTCTCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGARTGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14162152-14162232 1.1e-05 72_[+5] chrII:3267937-3268017 1.1e-05 61_[+5]_11 chrX:6867111-6867191 1.1e-05 42_[+5]_30 chrIII:8639291-8639371 1.1e-05 24_[+5]_48 chrIII:1354698-1354778 1.1e-05 27_[+5]_45 chrX:13444429-13444509 1.1e-05 33_[+5]_39 chrX:5709343-5709423 1.1e-05 41_[+5]_31 chrI:754677-754757 1.1e-05 12_[+5]_60 chrX:13307987-13308067 2.4e-05 44_[+5]_28 chrIII:8069377-8069457 2.4e-05 29_[+5]_43 chrX:15751385-15751465 2.4e-05 36_[+5]_36 chrIII:2711689-2711769 2.4e-05 23_[+5]_49 chrII:6491292-6491372 3.3e-05 29_[+5]_43 chrII:2860307-2860387 3.3e-05 44_[+5]_28 chrX:8939524-8939604 3.3e-05 35_[+5]_37 chrX:12942430-12942510 3.3e-05 37_[+5]_35 chrX:11163326-11163406 6.5e-05 60_[+5]_12 chrI:6051183-6051263 6.5e-05 [+5]_72 chrX:8417896-8417976 6.5e-05 44_[+5]_28 chrII:2735753-2735833 6.5e-05 69_[+5]_3 chrX:10666982-10667062 7.4e-05 65_[+5]_7 chrII:11972422-11972502 9.2e-05 33_[+5]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGARTGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGARTGG width=8 seqs=22 chrX:14162152-14162232 ( 73) CCGAGTGG 1 chrII:3267937-3268017 ( 62) CCGAGTGG 1 chrX:6867111-6867191 ( 43) CCGAGTGG 1 chrIII:8639291-8639371 ( 25) CCGAGTGG 1 chrIII:1354698-1354778 ( 28) CCGAGTGG 1 chrX:13444429-13444509 ( 34) CCGAGTGG 1 chrX:5709343-5709423 ( 42) CCGAGTGG 1 chrI:754677-754757 ( 13) CCGAGTGG 1 chrX:13307987-13308067 ( 45) CCGAATGG 1 chrIII:8069377-8069457 ( 30) CCGAATGG 1 chrX:15751385-15751465 ( 37) CCGAATGG 1 chrIII:2711689-2711769 ( 24) CCGAATGG 1 chrII:6491292-6491372 ( 30) CCGAGCGG 1 chrII:2860307-2860387 ( 45) CCGAGCGG 1 chrX:8939524-8939604 ( 36) CCGAGCGG 1 chrX:12942430-12942510 ( 38) CCGAGCGG 1 chrX:11163326-11163406 ( 61) CCGAAGGG 1 chrI:6051183-6051263 ( 1) CCGAAGGG 1 chrX:8417896-8417976 ( 45) CCGAAGGG 1 chrII:2735753-2735833 ( 70) CCGAAGGG 1 chrX:10666982-10667062 ( 66) CCGCGTGG 1 chrII:11972422-11972502 ( 34) CCGCGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGARTGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0499 E= 9.6e-005 -1110 213 -1110 -1110 -1110 213 -1110 -1110 -1110 -1110 211 -1110 172 -133 -1110 -1110 40 -1110 146 -1110 -1110 -1 -35 116 -1110 -1110 211 -1110 -1110 -1110 211 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGARTGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 9.6e-005 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.363636 0.000000 0.636364 0.000000 0.000000 0.227273 0.181818 0.590909 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGARTGG MEME-5 regular expression -------------------------------------------------------------------------------- CCGA[GA][TC]GG -------------------------------------------------------------------------------- Time 19.94 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:13419147-13419227 2.30e-02 80 chrV:17687548-17687628 1.86e-02 48_[+4(5.04e-05)]_24 chrX:13293160-13293240 6.60e-02 38_[+2(2.73e-05)]_34 chrX:15241376-15241456 3.34e-04 26_[+3(1.21e-05)]_2_[+4(2.76e-05)]_\ 36 chrV:17542497-17542577 1.19e-04 7_[+3(1.21e-05)]_2_[+4(2.76e-05)]_\ 55 chrV:15480686-15480766 6.73e-03 14_[+2(1.48e-05)]_58 chrX:13443423-13443503 1.60e-01 80 chrX:7507318-7507398 9.05e-04 19_[+3(1.21e-05)]_1_[+4(2.76e-05)]_\ 44 chrII:12362419-12362499 5.48e-02 36_[+2(1.48e-05)]_36 chrX:13782246-13782326 1.49e-04 9_[+2(1.48e-05)]_35_[+1(1.26e-05)]_\ 20 chrI:946079-946159 1.48e-04 2_[+1(8.05e-05)]_2_[+3(2.26e-05)]_\ 60 chrX:4410674-4410754 1.59e-03 7_[+3(9.98e-05)]_11_[+1(1.26e-05)]_\ 46 chrX:8037542-8037622 6.29e-02 13_[+1(1.26e-05)]_59 chrX:13284763-13284843 9.09e-06 13_[+1(2.76e-05)]_40_[+3(1.21e-05)]_\ 2_[+4(2.76e-05)]_1 chrIII:1744634-1744714 1.19e-02 2_[+1(9.13e-05)]_70 chrV:8495292-8495372 6.14e-04 16_[+2(1.48e-05)]_35_[+1(1.26e-05)]_\ 13 chrX:14211330-14211410 1.14e-02 35_[+4(5.04e-05)]_37 chrX:16217894-16217974 2.73e-06 48_[+3(1.21e-05)]_2_[+4(2.76e-05)]_\ 14 chrX:12854857-12854937 8.43e-01 80 chrV:5588079-5588159 5.36e-01 80 chrIV:7499503-7499583 5.72e-01 80 chrI:754677-754757 4.41e-04 12_[+5(1.08e-05)]_60 chrIII:2304250-2304330 2.68e-02 27_[+1(4.07e-05)]_45 chrX:12942430-12942510 3.06e-02 37_[+5(3.31e-05)]_35 chrX:8149111-8149191 9.64e-01 80 chrIV:4885519-4885599 2.15e-01 80 chrI:11910261-11910341 3.19e-01 80 chrIII:1163337-1163417 3.33e-03 27_[+1(6.73e-05)]_29_[+3(7.50e-05)]_\ 8 chrX:5709343-5709423 3.17e-02 41_[+5(1.08e-05)]_31 chrX:4607456-4607536 7.20e-02 7_[+1(5.64e-05)]_65 chrX:8846563-8846643 9.67e-01 80 chrIII:2711689-2711769 1.76e-03 23_[+5(2.38e-05)]_49 chrII:4565353-4565433 1.64e-03 42_[+2(1.48e-05)]_7_[+3(5.15e-05)]_\ 15 chrV:8499619-8499699 1.50e-02 2_[+4(2.76e-05)]_70 chrX:8877306-8877386 1.72e-02 80 chrIII:1603933-1604013 1.86e-01 80 chrX:13444429-13444509 4.46e-03 33_[+5(1.08e-05)]_39 chrIII:8473486-8473566 2.01e-02 36_[+1(1.26e-05)]_36 chrX:1208070-1208150 1.82e-01 80 chrIV:7344179-7344259 4.89e-05 14_[+1(8.05e-05)]_2_[+3(2.26e-05)]_\ 48 chrIII:2031332-2031412 2.13e-02 1_[+1(4.07e-05)]_71 chrV:16645662-16645742 2.69e-01 80 chrX:15751385-15751465 1.13e-02 36_[+5(2.38e-05)]_36 chrX:8945146-8945226 1.94e-05 51_[+1(8.05e-05)]_2_[+3(2.26e-05)]_\ 11 chrX:15242884-15242964 1.03e-01 80 chrX:487819-487899 2.52e-02 2_[+2(1.48e-05)]_70 chrX:13261231-13261311 1.59e-01 80 chrX:12937656-12937736 8.05e-01 80 chrII:11125322-11125402 1.22e-01 80 chrIII:8069377-8069457 5.24e-03 29_[+5(2.38e-05)]_43 chrII:12435537-12435617 2.27e-02 80 chrX:2526243-2526323 2.63e-03 22_[+3(7.50e-05)]_3_[+4(2.76e-05)]_\ 39 chrII:769433-769513 4.48e-02 34_[+2(2.73e-05)]_38 chrIV:10311225-10311305 7.58e-02 80 chrV:20350559-20350639 1.68e-03 17_[+3(6.03e-05)]_55 chrV:16648773-16648853 3.65e-01 80 chrX:1675239-1675319 9.86e-01 80 chrV:16640586-16640666 2.91e-02 80 chrX:14679132-14679212 4.70e-02 34_[+2(1.48e-05)]_38 chrX:7378739-7378819 5.67e-02 80 chrIV:2664941-2665021 2.34e-01 80 chrIII:1164820-1164900 1.03e-03 27_[+3(7.50e-05)]_3_[+4(2.76e-05)]_\ 34 chrX:13729836-13729916 4.52e-01 80 chrIII:13463729-13463809 9.25e-01 80 chrX:16299331-16299411 2.38e-01 80 chrX:16042608-16042688 2.17e-02 10_[+1(1.26e-05)]_62 chrX:4409731-4409811 5.40e-01 80 chrX:16503163-16503243 4.70e-04 28_[+3(3.26e-05)]_2_[+4(2.76e-05)]_\ 34 chrX:16590324-16590404 7.05e-01 80 chrX:5485676-5485756 9.12e-02 80 chrI:12601758-12601838 6.54e-05 22_[+2(1.48e-05)]_7_[+3(5.15e-05)]_\ 35 chrIII:1599068-1599148 1.58e-01 80 chrII:2735753-2735833 2.88e-03 51_[+1(2.76e-05)]_10_[+5(6.49e-05)]_\ 3 chrI:11977217-11977297 5.86e-01 80 chrV:7548724-7548804 3.18e-02 80 chrX:10731958-10732038 7.44e-02 41_[+1(2.76e-05)]_31 chrIV:13870235-13870315 4.58e-01 80 chrV:3163286-3163366 2.92e-01 80 chrX:15146545-15146625 5.20e-02 27_[+1(6.73e-05)]_45 chrX:13655973-13656053 3.26e-03 1_[+4(2.76e-05)]_71 chrIII:11554814-11554894 8.24e-02 17_[+2(1.48e-05)]_55 chrX:8838363-8838443 9.72e-01 80 chrIII:8646243-8646323 9.92e-01 80 chrV:16745055-16745135 9.99e-01 80 chrX:11933693-11933773 2.86e-02 41_[+2(1.48e-05)]_31 chrI:7238791-7238871 7.58e-01 80 chrX:7680994-7681074 1.10e-01 80 chrX:4453253-4453333 2.47e-01 80 chrIII:11836260-11836340 3.85e-02 80 chrV:8247456-8247536 8.35e-03 31_[+2(1.48e-05)]_41 chrX:7176954-7177034 1.22e-01 39_[+1(5.64e-05)]_33 chrIV:17279705-17279785 3.02e-02 16_[+5(8.45e-05)]_56 chrIV:7559317-7559397 7.51e-01 80 chrIII:2030971-2031051 8.04e-01 80 chrIII:10810801-10810881 9.43e-01 80 chrIV:8289201-8289281 6.47e-01 80 chrX:8819979-8820059 7.43e-01 80 chrX:16441106-16441186 6.21e-02 80 chrIV:7960856-7960936 2.08e-01 80 chrIII:3112164-3112244 5.64e-01 80 chrIII:13224559-13224639 3.12e-03 13_[+2(1.48e-05)]_59 chrI:5804750-5804830 5.77e-01 80 chrX:8417896-8417976 2.88e-03 26_[+1(2.76e-05)]_10_[+5(6.49e-05)]_\ 28 chrX:10124525-10124605 2.71e-01 80 chrI:6855500-6855580 3.82e-01 80 chrX:13717216-13717296 1.76e-02 28_[+1(1.26e-05)]_44 chrX:8381814-8381894 9.14e-01 80 chrIII:13411347-13411427 7.50e-03 66_[+3(1.21e-05)]_6 chrIV:13077931-13078011 9.99e-01 80 chrM:8780-8860 6.54e-01 80 chrX:10667595-10667675 2.86e-02 46_[+1(1.26e-05)]_26 chrII:8631933-8632013 5.20e-03 34_[+1(1.26e-05)]_38 chrIII:5705425-5705505 3.26e-01 80 chrIV:15793405-15793485 1.59e-04 16_[+2(1.48e-05)]_35_[+1(1.26e-05)]_\ 13 chrIV:8513954-8514034 7.27e-01 80 chrIV:7488588-7488668 2.78e-01 80 chrII:11972422-11972502 1.70e-01 33_[+5(9.22e-05)]_39 chrII:11916867-11916947 2.69e-01 80 chrV:15156668-15156748 2.06e-02 80 chrIII:2032870-2032950 5.39e-02 37_[+1(5.64e-05)]_35 chrI:13324203-13324283 7.05e-01 80 chrV:14991734-14991814 9.79e-01 80 chrV:18412474-18412554 3.54e-04 56_[+3(1.21e-05)]_1_[+4(2.76e-05)]_\ 7 chrIV:2664196-2664276 4.61e-02 80 chrIV:4864621-4864701 3.85e-01 80 chrIII:8725097-8725177 6.67e-01 80 chrIII:7495746-7495826 4.78e-01 80 chrX:7898362-7898442 9.52e-01 80 chrIV:1514588-1514668 1.92e-01 80 chrV:14412090-14412170 9.42e-01 80 chrX:8640838-8640918 8.21e-02 80 chrV:8496139-8496219 1.80e-03 12_[+3(4.28e-05)]_1_[+4(2.76e-05)]_\ 51 chrII:9713255-9713335 9.12e-04 16_[+3(3.26e-05)]_2_[+4(2.76e-05)]_\ 46 chrX:11993511-11993591 1.57e-01 20_[+1(5.64e-05)]_52 chrI:11803378-11803458 8.03e-01 80 chrV:3686075-3686155 7.01e-01 80 chrV:9407075-9407155 4.78e-04 12_[+3(4.28e-05)]_1_[+4(2.76e-05)]_\ 51 chrII:12672387-12672467 7.89e-01 80 chrIV:7275270-7275350 9.66e-01 80 chrX:15773443-15773523 1.67e-01 80 chrX:8419455-8419535 1.30e-01 80 chrIII:1743282-1743362 4.81e-01 80 chrII:2861595-2861675 1.05e-01 80 chrIII:3426874-3426954 4.65e-02 49_[+1(9.13e-05)]_23 chrIV:9781144-9781224 9.46e-01 80 chrI:6051183-6051263 6.31e-03 [+5(6.49e-05)]_72 chrII:5056355-5056435 8.17e-01 80 chrX:9237797-9237877 6.54e-05 20_[+2(1.48e-05)]_7_[+3(5.15e-05)]_\ 37 chrX:11163326-11163406 6.92e-03 42_[+1(2.76e-05)]_10_[+5(6.49e-05)]_\ 12 chrX:8939524-8939604 4.24e-02 35_[+5(3.31e-05)]_37 chrX:10148676-10148756 2.49e-02 80 chrI:6464151-6464231 9.77e-01 80 chrX:13283621-13283701 4.56e-05 26_[+1(5.64e-05)]_29_[+3(4.28e-05)]_\ 1_[+4(2.76e-05)] chrI:14758872-14758952 4.30e-01 80 chrIV:13701594-13701674 2.44e-01 80 chrX:9090742-9090822 2.31e-01 80 chrIV:2657478-2657558 2.45e-01 80 chrV:3455323-3455403 9.63e-04 50_[+3(6.03e-05)]_2_[+4(5.04e-05)]_\ 12 chrIII:5446570-5446650 9.77e-01 80 chrII:8577588-8577668 9.81e-01 80 chrIV:12005520-12005600 9.83e-01 80 chrI:10085755-10085835 6.69e-01 80 chrIV:2327500-2327580 3.27e-01 80 chrIV:16775127-16775207 5.00e-01 80 chrX:8154647-8154727 7.38e-01 80 chrV:14231386-14231466 5.21e-01 80 chrIII:1354698-1354778 8.66e-03 19_[+5(8.45e-05)]_[+5(1.08e-05)]_45 chrX:14228930-14229010 1.04e-04 27_[+1(8.05e-05)]_2_[+3(2.26e-05)]_\ 35 chrV:726407-726487 8.66e-01 80 chrIV:15476511-15476591 1.82e-02 51_[+4(5.04e-05)]_21 chrII:12542699-12542779 9.63e-01 80 chrX:9238833-9238913 6.97e-04 37_[+2(1.48e-05)]_7_[+3(5.15e-05)]_\ 20 chrI:7279379-7279459 6.90e-04 23_[+3(1.21e-05)]_2_[+4(2.76e-05)]_\ 39 chrX:13307987-13308067 2.84e-02 44_[+5(2.38e-05)]_28 chrI:4790690-4790770 5.42e-01 80 chrX:16300556-16300636 9.00e-01 80 chrII:2860307-2860387 3.06e-02 44_[+5(3.31e-05)]_28 chrI:11977953-11978033 4.07e-02 68_[+3(9.98e-05)]_4 chrIII:5229375-5229455 7.49e-01 80 chrX:7906587-7906667 9.26e-04 27_[+3(9.98e-05)]_11_[+1(1.26e-05)]_\ 26 chrX:13714820-13714900 5.81e-01 80 chrV:8230251-8230331 5.47e-03 2_[+3(6.03e-05)]_2_[+4(5.04e-05)]_\ 60 chrIII:12496597-12496677 7.94e-01 80 chrIV:13355933-13356013 8.24e-01 80 chrIV:8500046-8500126 2.71e-02 23_[+2(5.38e-05)]_49 chrI:5985127-5985207 5.07e-02 18_[+1(2.76e-05)]_54 chrV:16225638-16225718 3.90e-01 80 chrIV:5344333-5344413 1.62e-04 4_[+1(8.05e-05)]_2_[+3(2.26e-05)]_\ 58 chrIII:8639291-8639371 1.21e-02 24_[+5(1.08e-05)]_48 chrII:13521399-13521479 9.53e-01 80 chrX:16618253-16618333 2.73e-01 80 chrV:6551842-6551922 2.06e-02 80 chrI:5571798-5571878 9.75e-01 80 chrI:5985337-5985417 7.36e-01 80 chrIV:13882696-13882776 4.51e-01 80 chrX:8944283-8944363 2.60e-01 80 chrIII:11824705-11824785 8.45e-01 80 chrIII:698983-699063 7.85e-02 80 chrV:3582220-3582300 3.13e-01 80 chrX:8152738-8152818 9.51e-01 80 chrIII:12875801-12875881 9.82e-01 80 chrIV:4930918-4930998 9.79e-01 80 chrX:9561148-9561228 3.60e-02 80 chrIV:4347687-4347767 4.21e-01 80 chrX:6867111-6867191 3.97e-02 42_[+5(1.08e-05)]_30 chrV:13175796-13175876 3.38e-01 80 chrM:5226-5306 9.32e-01 80 chrV:15515540-15515620 2.75e-01 80 chrX:8156694-8156774 4.78e-01 80 chrIII:9782155-9782235 5.46e-01 80 chrIV:11377550-11377630 4.48e-01 80 chrIII:9615248-9615328 8.87e-01 80 chrIV:4468887-4468967 3.06e-01 80 chrII:7049660-7049740 1.13e-01 80 chrIII:8653689-8653769 7.10e-01 80 chrII:10098489-10098569 9.82e-02 80 chrV:6559722-6559802 2.35e-03 41_[+2(1.48e-05)]_31 chrI:5123982-5124062 8.63e-01 80 chrX:2893076-2893156 2.95e-01 80 chrIV:7961813-7961893 2.73e-01 80 chrV:15547908-15547988 6.06e-01 80 chrV:15454479-15454559 2.49e-01 80 chrIII:4015789-4015869 1.59e-01 80 chrX:5451224-5451304 5.15e-04 27_[+3(1.21e-05)]_2_[+4(2.76e-05)]_\ 35 chrI:9774041-9774121 8.97e-01 80 chrIV:14658218-14658298 3.39e-01 80 chrV:16919785-16919865 4.04e-01 80 chrX:16619298-16619378 1.08e-01 80 chrV:6335391-6335471 3.25e-03 13_[+2(1.48e-05)]_59 chrM:1831-1911 9.29e-01 80 chrX:1491195-1491275 6.90e-01 80 chrI:10436899-10436979 4.91e-01 80 chrV:16027503-16027583 7.62e-01 80 chrV:15479999-15480079 3.35e-05 33_[+3(1.21e-05)]_1_[+4(2.76e-05)]_\ 30 chrII:3267937-3268017 8.81e-03 61_[+5(1.08e-05)]_11 chrIV:15933263-15933343 5.94e-01 80 chrI:3159054-3159134 4.06e-02 80 chrV:5719694-5719774 2.83e-01 80 chrX:13435926-13436006 4.37e-02 46_[+2(1.48e-05)]_26 chrII:6491292-6491372 1.36e-01 29_[+5(3.31e-05)]_43 chrX:9024434-9024514 1.49e-03 26_[+3(1.21e-05)]_1_[+4(2.76e-05)]_\ 37 chrV:8012133-8012213 8.33e-01 80 chrX:10666982-10667062 8.78e-03 50_[+1(5.64e-05)]_7_[+5(7.39e-05)]_\ 7 chrX:16690028-16690108 2.31e-01 80 chrX:14162152-14162232 1.25e-03 72_[+5(1.08e-05)] chrIII:6374203-6374283 6.44e-02 80 chrI:6135766-6135846 9.28e-03 70_[+2(1.48e-05)]_2 chrV:4632995-4633075 3.06e-01 80 chrX:8955849-8955929 6.67e-01 80 chrII:10304788-10304868 8.38e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************